Your job contains 1 sequence.
>022012
MAAVRLLLSQARRHCLTKPHASPSVTFQRTLCSSTAVQDDDESQNPPKQPIPVVSYASKP
KDESNAPIENAQQQQNELQSDNPPHDFQAEEARTGLTREDIRYLKDVPTITPVSYPSRVA
PLPEAGEPASGEAEGEGDGERRRIQSEKKTLRFMRVPEQAQVSVPYPLLIKPESKKKESR
PVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVAFF
AEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLM
PNPK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022012
(304 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2041519 - symbol:AT2G42710 species:3702 "Arabi... 568 4.8e-55 1
TIGR_CMR|SPO_3513 - symbol:SPO_3513 "ribosomal protein L1... 214 1.6e-17 1
TIGR_CMR|CJE_0525 - symbol:CJE_0525 "ribosomal protein L1... 201 3.7e-16 1
UNIPROTKB|P96932 - symbol:rplA "50S ribosomal protein L1"... 199 6.0e-16 1
TIGR_CMR|DET_0992 - symbol:DET_0992 "ribosomal protein L1... 199 6.0e-16 1
TIGR_CMR|ECH_0955 - symbol:ECH_0955 "ribosomal protein L1... 188 8.8e-15 1
TIGR_CMR|GSU_2866 - symbol:GSU_2866 "ribosomal protein L1... 184 2.3e-14 1
TIGR_CMR|CBU_0227 - symbol:CBU_0227 "ribosomal protein L1... 180 6.2e-14 1
TIGR_CMR|CHY_2322 - symbol:CHY_2322 "ribosomal protein L1... 178 1.0e-13 1
TIGR_CMR|APH_1027 - symbol:APH_1027 "ribosomal protein L1... 171 5.6e-13 1
UNIPROTKB|Q06797 - symbol:rplA "50S ribosomal protein L1"... 170 7.3e-13 1
TIGR_CMR|BA_0098 - symbol:BA_0098 "ribosomal protein L1" ... 170 7.3e-13 1
TAIR|locus:2087388 - symbol:EMB3126 "EMBRYO DEFECTIVE 312... 180 4.0e-12 1
TIGR_CMR|SO_0221 - symbol:SO_0221 "ribosomal protein L1" ... 165 2.7e-11 1
UNIPROTKB|P0A7L0 - symbol:rplA "50S ribosomal subunit pro... 158 3.8e-10 1
UNIPROTKB|Q9KV33 - symbol:rplA "50S ribosomal protein L1"... 151 3.7e-09 1
TIGR_CMR|VC_0325 - symbol:VC_0325 "ribosomal protein L1" ... 151 3.7e-09 1
TIGR_CMR|CPS_4772 - symbol:CPS_4772 "ribosomal protein L1... 147 1.2e-08 1
>TAIR|locus:2041519 [details] [associations]
symbol:AT2G42710 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0015934 "large
ribosomal subunit" evidence=IEA;ISS] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=RCA] InterPro:IPR002143
InterPro:IPR005878 InterPro:IPR016094 InterPro:IPR016095
InterPro:IPR023674 Pfam:PF00687 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0003735
GO:GO:0015934 SUPFAM:SSF56808 eggNOG:COG0081 Gene3D:3.30.190.20
Gene3D:3.40.50.790 HOGENOM:HOG000207015 TIGRFAMs:TIGR01169
HSSP:P27150 EMBL:AY091124 EMBL:AY113995 EMBL:AK118309
IPI:IPI00522914 RefSeq:NP_850375.1 UniGene:At.36979
ProteinModelPortal:Q8RWT4 SMR:Q8RWT4 STRING:Q8RWT4 PaxDb:Q8RWT4
PRIDE:Q8RWT4 EnsemblPlants:AT2G42710.1 GeneID:818871
KEGG:ath:AT2G42710 TAIR:At2g42710 InParanoid:Q8RWT4 OMA:KYAGYVN
PhylomeDB:Q8RWT4 ProtClustDB:CLSN2680207 Genevestigator:Q8RWT4
Uniprot:Q8RWT4
Length = 415
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 142/322 (44%), Positives = 187/322 (58%)
Query: 1 MAAVRLLLSQARRHCLTKPHASPSVTFQRTLCSSTAVQDDDESQ---NP-P------KQP 50
MAA++LLLSQARR L KP +SP R SS++ S NP P K+
Sbjct: 1 MAAMKLLLSQARRQGLIKPFSSPFQQIPRLFSSSSSSSSSSSSSSDSNPSPDSNESRKKA 60
Query: 51 IPV--VSYASKPKDESNAPIENAQQQQNELQSDNPPHDFQAEEARTGLTREDIRYLKDVP 108
+ + VSYA+KPKD+ + P +N + +N LQS P E A TRE+IRY+KD P
Sbjct: 61 VTIEPVSYAAKPKDQKSEP-KNVESTEN-LQS--P------ESANW--TREEIRYVKDSP 108
Query: 109 TITPVSYPSRVX---XXXXXXXXXXXXXXXXXXXXRRRIQSEKKTLR-FMRVP--EQAQV 162
+I PVSY RV R+RI+ E + R F+R E+
Sbjct: 109 SINPVSYAQRVAPLPEDRVAGENEGDRTPEEMERERKRIELENRARRRFLRANAVEEDTS 168
Query: 163 SVPYPLLIKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVR 222
S+P P L+KPE K + +P+ DLM+AI+++K NAKA FDET+EAHVRL I ++ELIVR
Sbjct: 169 SLPLPTLLKPELKHGK-KPIFDLMEAIREIKGNAKAKFDETLEAHVRLGIEKGRSELIVR 227
Query: 223 GTMNLPHGDKKAVRVXXXXXXXXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQ 282
GT+ LPH KK V+V +VGGLELIEEI SGK+D ++C +T +
Sbjct: 228 GTLALPHSVKKDVKVAFFAEGADAEDAKAAGADVVGGLELIEEILKSGKIDFDRCLATPK 287
Query: 283 FMPRLFKISKILNQHGLMPNPK 304
MPR++KIS+ILN HGLMPNPK
Sbjct: 288 MMPRVYKISRILNNHGLMPNPK 309
>TIGR_CMR|SPO_3513 [details] [associations]
symbol:SPO_3513 "ribosomal protein L1" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR002143
InterPro:IPR005878 InterPro:IPR016094 InterPro:IPR016095
InterPro:IPR023674 Pfam:PF00687 PIRSF:PIRSF002155 Prosite:PS01199
GO:GO:0006417 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412
GO:GO:0003735 GO:GO:0000049 GO:GO:0019843 GO:GO:0015934
SUPFAM:SSF56808 eggNOG:COG0081 Gene3D:3.30.190.20
Gene3D:3.40.50.790 InterPro:IPR023673 HOGENOM:HOG000207015
TIGRFAMs:TIGR01169 KO:K02863 OMA:YVTSTMG ProtClustDB:PRK05424
HAMAP:MF_01318_B RefSeq:YP_168708.1 ProteinModelPortal:Q5LMQ0
SMR:Q5LMQ0 GeneID:3194818 KEGG:sil:SPO3513 PATRIC:23380497
Uniprot:Q5LMQ0
Length = 232
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 46/122 (37%), Positives = 66/122 (54%)
Query: 183 LDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVXXXXX 242
L + A+ +K+ A A FDETVE + L + PR + +VRG + LP+G K VRV
Sbjct: 21 LSVEQAVALIKSAASAKFDETVEIAMNLGVDPRHADQMVRGVVGLPNGTGKTVRVAVFAR 80
Query: 243 XXXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPN 302
IVG +L+E I SGK++ ++C +T MP + ++ KIL LMPN
Sbjct: 81 GPKAEEAQAAGADIVGAEDLMETI-QSGKIEFDRCIATPDMMPVVGRLGKILGPRNLMPN 139
Query: 303 PK 304
PK
Sbjct: 140 PK 141
>TIGR_CMR|CJE_0525 [details] [associations]
symbol:CJE_0525 "ribosomal protein L1" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR002143
InterPro:IPR005878 InterPro:IPR016094 InterPro:IPR016095
InterPro:IPR023674 Pfam:PF00687 PIRSF:PIRSF002155 Prosite:PS01199
GO:GO:0006417 GO:GO:0006412 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 GO:GO:0000049 GO:GO:0019843 GO:GO:0015934
SUPFAM:SSF56808 eggNOG:COG0081 Gene3D:3.30.190.20
Gene3D:3.40.50.790 InterPro:IPR023673 HOGENOM:HOG000207015
OMA:AKGRYVK TIGRFAMs:TIGR01169 KO:K02863 ProtClustDB:PRK05424
HAMAP:MF_01318_B RefSeq:YP_178543.1 ProteinModelPortal:Q5HVZ2
SMR:Q5HVZ2 STRING:Q5HVZ2 GeneID:3231286 KEGG:cjr:CJE0525
PATRIC:20042772 BioCyc:CJEJ195099:GJC0-540-MONOMER Uniprot:Q5HVZ2
Length = 233
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 49/135 (36%), Positives = 69/135 (51%)
Query: 170 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPH 229
+K S+K +S L DAI +K A FDETVE ++L + PR + +VRG++ LP
Sbjct: 8 LKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEIALKLNVDPRHADQMVRGSVVLPA 67
Query: 230 GDKKAVRVXXXXXXXXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFK 289
G K VRV IVG +L+EEI G ++ + +T M + K
Sbjct: 68 GTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVEEI-QKGNMNFDVLIATPNLMGLVGK 126
Query: 290 ISKILNQHGLMPNPK 304
+ +IL GLMPNPK
Sbjct: 127 VGRILGPKGLMPNPK 141
>UNIPROTKB|P96932 [details] [associations]
symbol:rplA "50S ribosomal protein L1" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR002143 InterPro:IPR005878
InterPro:IPR016094 InterPro:IPR016095 InterPro:IPR023674
Pfam:PF00687 PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0005829
GO:GO:0005886 GO:GO:0005618 GO:GO:0006417 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0006412
EMBL:BX842574 GO:GO:0003735 GO:GO:0000049 GO:GO:0019843
GO:GO:0015934 SUPFAM:SSF56808 eggNOG:COG0081 Gene3D:3.30.190.20
Gene3D:3.40.50.790 InterPro:IPR023673 HOGENOM:HOG000207015
TIGRFAMs:TIGR01169 KO:K02863 OMA:YVTSTMG ProtClustDB:PRK05424
HAMAP:MF_01318_B PIR:F70613 RefSeq:NP_215155.1 RefSeq:NP_335081.1
RefSeq:YP_006513982.1 ProteinModelPortal:P96932 SMR:P96932
PRIDE:P96932 EnsemblBacteria:EBMYCT00000001871
EnsemblBacteria:EBMYCT00000072842 GeneID:13318527 GeneID:888043
GeneID:925953 KEGG:mtc:MT0669.1 KEGG:mtu:Rv0641 KEGG:mtv:RVBD_0641
PATRIC:18123195 TubercuList:Rv0641 Uniprot:P96932
Length = 235
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 43/119 (36%), Positives = 61/119 (51%)
Query: 186 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVXXXXXXXX 245
+ A K K + D TVE +RL + PRK + +VRGT+NLPHG K RV
Sbjct: 24 LQAAKLAKETSSTKQDATVEVAIRLGVDPRKADQMVRGTVNLPHGTGKTARVAVFAVGEK 83
Query: 246 XXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPK 304
+VG +LIE I G L+ + +T M ++ +I+++L GLMPNPK
Sbjct: 84 ADAAVAAGADVVGSDDLIERI-QGGWLEFDAAIATPDQMAKVGRIARVLGPRGLMPNPK 141
>TIGR_CMR|DET_0992 [details] [associations]
symbol:DET_0992 "ribosomal protein L1" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR002143 InterPro:IPR005878 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687
PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417 GO:GO:0006412
GO:GO:0003735 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000049
GO:GO:0019843 GO:GO:0015934 SUPFAM:SSF56808 eggNOG:COG0081
Gene3D:3.30.190.20 Gene3D:3.40.50.790 InterPro:IPR023673
HOGENOM:HOG000207015 OMA:AKGRYVK TIGRFAMs:TIGR01169 KO:K02863
ProtClustDB:PRK05424 HAMAP:MF_01318_B RefSeq:YP_181715.1
ProteinModelPortal:Q3Z7T4 STRING:Q3Z7T4 GeneID:3229744
KEGG:det:DET0992 PATRIC:21609033 BioCyc:DETH243164:GJNF-993-MONOMER
Uniprot:Q3Z7T4
Length = 237
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 44/118 (37%), Positives = 62/118 (52%)
Query: 187 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVXXXXXXXXX 246
+AI K A A FDETVE H+++ + P+ +RG LPHG K VRV
Sbjct: 25 EAIDVAKKMAAAKFDETVEMHLKMGLDPKNATQQLRGVAVLPHGLGKTVRVLVFAQGEAE 84
Query: 247 XXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPK 304
+ GG ELI+++ +G LD + ST M ++ K+ K+L + GLMPNPK
Sbjct: 85 KAAQAAGADVYGGDELIKKV-EAGFLDFDVAISTPDMMSKVGKLGKVLGRRGLMPNPK 141
>TIGR_CMR|ECH_0955 [details] [associations]
symbol:ECH_0955 "ribosomal protein L1" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR002143 InterPro:IPR005878 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687
PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 GO:GO:0015934 SUPFAM:SSF56808 eggNOG:COG0081
Gene3D:3.30.190.20 Gene3D:3.40.50.790 InterPro:IPR023673
HOGENOM:HOG000207015 TIGRFAMs:TIGR01169 KO:K02863 OMA:YVTSTMG
ProtClustDB:PRK05424 HAMAP:MF_01318_B RefSeq:YP_507743.1
ProteinModelPortal:Q2GFP0 STRING:Q2GFP0 GeneID:3927409
KEGG:ech:ECH_0955 PATRIC:20577292
BioCyc:ECHA205920:GJNR-958-MONOMER Uniprot:Q2GFP0
Length = 220
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 47/127 (37%), Positives = 66/127 (51%)
Query: 179 SRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVX 238
S V D+ +++V +AKA F E+V+ + L I K++ VRG + LP G + ++V
Sbjct: 6 SNEVYDVESGLRKVIESAKANFCESVDVAINLNINSSKSDEQVRGCVVLPKGLGREIKVA 65
Query: 239 XXXXXXXXXXXXXXXXXIVGGLELIEEIASSG-KLDVEKCFSTRQFMPRLFKISKILNQH 297
IVG ELIEE+ KLDV+ C +T FM + I+KIL
Sbjct: 66 VFAKGGYLEMAREAMADIVGDEELIEEVKKKQCKLDVDWCLTTPDFMASVSSIAKILGPK 125
Query: 298 GLMPNPK 304
GLMPNPK
Sbjct: 126 GLMPNPK 132
>TIGR_CMR|GSU_2866 [details] [associations]
symbol:GSU_2866 "ribosomal protein L1" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR002143
InterPro:IPR005878 InterPro:IPR016094 InterPro:IPR016095
InterPro:IPR023674 Pfam:PF00687 PIRSF:PIRSF002155 Prosite:PS01199
GO:GO:0006417 GO:GO:0006412 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 GO:GO:0000049 GO:GO:0019843 GO:GO:0015934
SUPFAM:SSF56808 eggNOG:COG0081 Gene3D:3.30.190.20
Gene3D:3.40.50.790 InterPro:IPR023673 HOGENOM:HOG000207015
TIGRFAMs:TIGR01169 KO:K02863 OMA:YVTSTMG ProtClustDB:PRK05424
HAMAP:MF_01318_B RefSeq:NP_953908.1 ProteinModelPortal:Q748Y3
SMR:Q748Y3 GeneID:2686759 KEGG:gsu:GSU2866 PATRIC:22028583
BioCyc:GSUL243231:GH27-2847-MONOMER Uniprot:Q748Y3
Length = 234
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 45/120 (37%), Positives = 62/120 (51%)
Query: 185 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVXXXXXXX 244
L++ I+ VK+ A A FDETVE VRL + PR + +VRG + LP+G K VRV
Sbjct: 23 LVEGIESVKSAAYAKFDETVEVAVRLGVDPRHADQMVRGAVVLPNGLGKDVRVLVFAKGE 82
Query: 245 XXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPK 304
VG +L+ +I G + + +T M + KI K+L GLMPNPK
Sbjct: 83 KEKEAREAGADYVGAEDLVTKI-QEGWFEFDTAIATPDMMGVVGKIGKLLGPRGLMPNPK 141
>TIGR_CMR|CBU_0227 [details] [associations]
symbol:CBU_0227 "ribosomal protein L1" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR002143 InterPro:IPR005878
InterPro:IPR016094 InterPro:IPR016095 InterPro:IPR023674
Pfam:PF00687 PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417
GO:GO:0006412 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 GO:GO:0015934 SUPFAM:SSF56808
eggNOG:COG0081 Gene3D:3.30.190.20 Gene3D:3.40.50.790
InterPro:IPR023673 HOGENOM:HOG000207015 TIGRFAMs:TIGR01169
KO:K02863 OMA:YVTSTMG ProtClustDB:PRK05424 HAMAP:MF_01318_B
RefSeq:NP_819271.1 ProteinModelPortal:Q83ET3 SMR:Q83ET3
GeneID:1208108 KEGG:cbu:CBU_0227 PATRIC:17929145
BioCyc:CBUR227377:GJ7S-233-MONOMER Uniprot:Q83ET3
Length = 232
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 43/134 (32%), Positives = 67/134 (50%)
Query: 171 KPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHG 230
K ++K + L +AIK +K AKA F+E+++ + L I RK++ +RG LPHG
Sbjct: 10 KTLAEKVQRDKTYPLSEAIKLIKECAKAKFNESIDVAINLGIDSRKSDQAIRGATVLPHG 69
Query: 231 DKKAVRVXXXXXXXXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKI 290
+ V+V IVG +L E I G +D + +T + M + K+
Sbjct: 70 SGRTVKVAVFAQGDNVEKAKAAGADIVGLDDLAERI-QGGDIDFDVVIATPETMRVVGKL 128
Query: 291 SKILNQHGLMPNPK 304
++L GLMPNPK
Sbjct: 129 GQVLGPRGLMPNPK 142
>TIGR_CMR|CHY_2322 [details] [associations]
symbol:CHY_2322 "ribosomal protein L1" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR002143 InterPro:IPR005878
InterPro:IPR016094 InterPro:IPR016095 InterPro:IPR023674
Pfam:PF00687 PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 GO:GO:0015934 SUPFAM:SSF56808
eggNOG:COG0081 Gene3D:3.30.190.20 Gene3D:3.40.50.790
InterPro:IPR023673 HOGENOM:HOG000207015 OMA:AKGRYVK
TIGRFAMs:TIGR01169 KO:K02863 ProtClustDB:PRK05424 HAMAP:MF_01318_B
RefSeq:YP_361131.1 ProteinModelPortal:Q3A9Q3 SMR:Q3A9Q3
STRING:Q3A9Q3 GeneID:3728765 KEGG:chy:CHY_2322 PATRIC:21277711
BioCyc:CHYD246194:GJCN-2321-MONOMER Uniprot:Q3A9Q3
Length = 231
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 45/131 (34%), Positives = 64/131 (48%)
Query: 174 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKK 233
+KK + + + +A VK + A FDETVE V+L + PR + VRG + LPHG K
Sbjct: 12 AKKVDKTKLYEPAEAFSLVKELSFAKFDETVEVAVKLGVDPRHADQQVRGAVVLPHGTGK 71
Query: 234 AVRVXXXXXXXXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKI 293
+V VG E IE+IA G +D + +T M + ++ KI
Sbjct: 72 TRKVLVFAKGEKAKEAEAAGADYVGAEEYIEKIAQ-GWIDFDVVVATPDMMGAVGRLGKI 130
Query: 294 LNQHGLMPNPK 304
L GLMP+PK
Sbjct: 131 LGPKGLMPSPK 141
>TIGR_CMR|APH_1027 [details] [associations]
symbol:APH_1027 "ribosomal protein L1" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR002143 InterPro:IPR005878 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687
PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417 GO:GO:0006412
GO:GO:0003735 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0000049
GO:GO:0019843 GO:GO:0015934 SUPFAM:SSF56808 eggNOG:COG0081
Gene3D:3.30.190.20 Gene3D:3.40.50.790 InterPro:IPR023673
HOGENOM:HOG000207015 TIGRFAMs:TIGR01169 RefSeq:YP_505586.1
ProteinModelPortal:Q2GJ65 STRING:Q2GJ65 GeneID:3931039
KEGG:aph:APH_1027 PATRIC:20950804 KO:K02863 OMA:YVTSTMG
ProtClustDB:PRK05424 BioCyc:APHA212042:GHPM-1034-MONOMER
HAMAP:MF_01318_B Uniprot:Q2GJ65
Length = 216
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 40/118 (33%), Positives = 59/118 (50%)
Query: 187 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVXXXXXXXXX 246
+ I Q+ + A F E+V+ ++L+ ++ +RG LP G + VRV
Sbjct: 12 EGIDQLLKSTTARFKESVDVAIKLSTGDSRSGDSIRGVAVLPKGLGREVRVAVLAKGEYA 71
Query: 247 XXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPK 304
+VG +LIEEI KLD + C +T FM ++ I+KIL GLMPNPK
Sbjct: 72 KQAKDAGADVVGDSDLIEEIKKGRKLDFDWCIATPDFMSQVSAIAKILGPRGLMPNPK 129
>UNIPROTKB|Q06797 [details] [associations]
symbol:rplA "50S ribosomal protein L1" species:224308
"Bacillus subtilis subsp. subtilis str. 168" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR002143 InterPro:IPR005878
InterPro:IPR016094 InterPro:IPR016095 InterPro:IPR023674
Pfam:PF00687 PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417
GO:GO:0006412 GO:GO:0003735 EMBL:AL009126 GenomeReviews:AL009126_GR
GO:GO:0000049 GO:GO:0019843 GO:GO:0015934 SUPFAM:SSF56808
eggNOG:COG0081 Gene3D:3.30.190.20 Gene3D:3.40.50.790
InterPro:IPR023673 HOGENOM:HOG000207015 TIGRFAMs:TIGR01169
KO:K02863 ProtClustDB:PRK05424 HAMAP:MF_01318_B EMBL:D13303
EMBL:D50303 PIR:E69694 RefSeq:NP_387984.2 ProteinModelPortal:Q06797
SMR:Q06797 EnsemblBacteria:EBBACT00000001732 GeneID:936843
KEGG:bsu:BSU01030 PATRIC:18971715 GenoList:BSU01030
BioCyc:BSUB:BSU01030-MONOMER Uniprot:Q06797
Length = 232
Score = 170 (64.9 bits), Expect = 7.3e-13, P = 7.3e-13
Identities = 41/121 (33%), Positives = 56/121 (46%)
Query: 184 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVXXXXXX 243
D+ +A+ VK A FD TVE RL + PRK + +RG + LP+G K RV
Sbjct: 22 DVSEAVALVKKTNTAKFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKG 81
Query: 244 XXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNP 303
VG + I +I G D + +T M + KI ++L GLMPNP
Sbjct: 82 EKAKEAEAAGADFVGDTDYINKI-QQGWFDFDVIVATPDMMGEVGKIGRVLGPKGLMPNP 140
Query: 304 K 304
K
Sbjct: 141 K 141
>TIGR_CMR|BA_0098 [details] [associations]
symbol:BA_0098 "ribosomal protein L1" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR002143 InterPro:IPR005878 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687
PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0003735 GO:GO:0000049 GO:GO:0019843 GO:GO:0015934
SUPFAM:SSF56808 eggNOG:COG0081 Gene3D:3.30.190.20
Gene3D:3.40.50.790 InterPro:IPR023673 HOGENOM:HOG000207015
OMA:AKGRYVK TIGRFAMs:TIGR01169 KO:K02863 ProtClustDB:PRK05424
HAMAP:MF_01318_B RefSeq:NP_842666.1 RefSeq:YP_016701.1
RefSeq:YP_026384.1 ProteinModelPortal:Q81VU2 SMR:Q81VU2
DNASU:1087066 EnsemblBacteria:EBBACT00000011718
EnsemblBacteria:EBBACT00000017677 EnsemblBacteria:EBBACT00000020059
GeneID:1087066 GeneID:2814891 GeneID:2848851 KEGG:ban:BA_0098
KEGG:bar:GBAA_0098 KEGG:bat:BAS0098
BioCyc:BANT260799:GJAJ-109-MONOMER
BioCyc:BANT261594:GJ7F-111-MONOMER Uniprot:Q81VU2
Length = 230
Score = 170 (64.9 bits), Expect = 7.3e-13, P = 7.3e-13
Identities = 40/118 (33%), Positives = 56/118 (47%)
Query: 187 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVXXXXXXXXX 246
+A++ VK A FD TVEA RL + P+K + +RG + LPHG K RV
Sbjct: 25 EAVELVKKTNTAKFDATVEAAFRLGVDPKKADQQIRGAVVLPHGTGKVQRVLVFAKGEKA 84
Query: 247 XXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPK 304
VG + I +I G D + +T M + K+ ++L GLMPNPK
Sbjct: 85 KEAEAAGADFVGDADYIGKI-QQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPK 141
>TAIR|locus:2087388 [details] [associations]
symbol:EMB3126 "EMBRYO DEFECTIVE 3126" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005840 "ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0009535 "chloroplast
thylakoid membrane" evidence=IDA] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] [GO:0006098 "pentose-phosphate
shunt" evidence=RCA] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] [GO:0009073 "aromatic amino acid family
biosynthetic process" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] [GO:0045036 "protein targeting
to chloroplast" evidence=RCA] InterPro:IPR002143 InterPro:IPR005878
InterPro:IPR016094 InterPro:IPR016095 InterPro:IPR023674
Pfam:PF00687 Prosite:PS01199 GO:GO:0005634 GO:GO:0009570
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006412 GO:GO:0009941
EMBL:AL163818 GO:GO:0003735 GO:GO:0009535 GO:GO:0019843
GO:GO:0015934 SUPFAM:SSF56808 UniGene:At.24203 UniGene:At.69654
eggNOG:COG0081 Gene3D:3.30.190.20 Gene3D:3.40.50.790
InterPro:IPR023673 EMBL:X90855 EMBL:BT001191 EMBL:AY133519
EMBL:AY059929 EMBL:AY053410 IPI:IPI00522851 PIR:T49190 PIR:T51934
RefSeq:NP_191908.1 HSSP:Q5SLP7 ProteinModelPortal:Q9LY66 SMR:Q9LY66
STRING:Q9LY66 PaxDb:Q9LY66 PRIDE:Q9LY66 ProMEX:Q9LY66
EnsemblPlants:AT3G63490.1 GeneID:825524 KEGG:ath:AT3G63490
GeneFarm:61 TAIR:At3g63490 HOGENOM:HOG000207015 InParanoid:Q9LY66
OMA:AKGRYVK PhylomeDB:Q9LY66 ProtClustDB:CLSN2914724
Genevestigator:Q9LY66 TIGRFAMs:TIGR01169 Uniprot:Q9LY66
Length = 346
Score = 180 (68.4 bits), Expect = 4.0e-12, P = 4.0e-12
Identities = 44/130 (33%), Positives = 66/130 (50%)
Query: 175 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKA 234
K +E++ D+ AI +K A F E+VEAH RL I P+ + +R T++LP G +
Sbjct: 121 KLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPKGTGQT 180
Query: 235 VRVXXXXXXXXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKIL 294
V V IVG +LIE+I G ++ +K ++ M ++ + KIL
Sbjct: 181 VIVAVLAQGEKVDEAKSAGADIVGSDDLIEQI-KGGFMEFDKLIASPDMMVKVAGLGKIL 239
Query: 295 NQHGLMPNPK 304
GLMPNPK
Sbjct: 240 GPRGLMPNPK 249
>TIGR_CMR|SO_0221 [details] [associations]
symbol:SO_0221 "ribosomal protein L1" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR002143 InterPro:IPR005878 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687
PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417 GO:GO:0006412
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 GO:GO:0015934 SUPFAM:SSF56808 eggNOG:COG0081
Gene3D:3.30.190.20 Gene3D:3.40.50.790 InterPro:IPR023673
HOGENOM:HOG000207015 OMA:AKGRYVK TIGRFAMs:TIGR01169 KO:K02863
ProtClustDB:PRK05424 HAMAP:MF_01318_B RefSeq:NP_715861.1
ProteinModelPortal:Q8EK77 SMR:Q8EK77 GeneID:1168104
KEGG:son:SO_0221 PATRIC:23520135 Uniprot:Q8EK77
Length = 233
Score = 165 (63.1 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 41/130 (31%), Positives = 66/130 (50%)
Query: 175 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKA 234
+K + + ++ DA+ +K A A F E+V+ V L I PRK++ VRG LPHG +
Sbjct: 13 EKVDGTKLYEINDAVALLKELATAKFVESVDVAVNLGIDPRKSDQNVRGATVLPHGTGRD 72
Query: 235 VRVXXXXXXXXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKIL 294
VRV +VG +L E+I +G+++ + ++ M + + +IL
Sbjct: 73 VRVAVFTQGANAEAAKAAGAELVGMDDLAEKI-KAGEMNFDVVIASPDAMRVVGMLGQIL 131
Query: 295 NQHGLMPNPK 304
GLMPNPK
Sbjct: 132 GPRGLMPNPK 141
>UNIPROTKB|P0A7L0 [details] [associations]
symbol:rplA "50S ribosomal subunit protein L1"
species:83333 "Escherichia coli K-12" [GO:0015934 "large ribosomal
subunit" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0019843
"rRNA binding" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000049 "tRNA binding" evidence=IEA]
[GO:0045947 "negative regulation of translational initiation"
evidence=IDA] InterPro:IPR002143 InterPro:IPR005878
InterPro:IPR016094 InterPro:IPR016095 InterPro:IPR023674
Pfam:PF00687 PIRSF:PIRSF002155 Prosite:PS01199 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0045947 GO:GO:0006412 EMBL:U00006 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 GO:GO:0015934 SUPFAM:SSF56808 PDB:2RDO PDBsum:2RDO
EMBL:V00339 eggNOG:COG0081 Gene3D:3.30.190.20 Gene3D:3.40.50.790
InterPro:IPR023673 PDB:1ML5 PDBsum:1ML5 HOGENOM:HOG000207015
OMA:AKGRYVK TIGRFAMs:TIGR01169 PDB:3J0T PDB:3J0W PDB:3J0Y PDB:3J11
PDB:3J12 PDB:3J14 PDBsum:3J0T PDBsum:3J0W PDBsum:3J0Y PDBsum:3J11
PDBsum:3J12 PDBsum:3J14 PDB:1EG0 PDB:2GYA PDB:2GYC PDB:2WWQ
PDB:3E1B PDB:3E1D PDB:3FIK PDB:3IZT PDB:3IZU PDB:3J01 PDB:3KCR
PDB:487D PDBsum:1EG0 PDBsum:2GYA PDBsum:2GYC PDBsum:2WWQ
PDBsum:3E1B PDBsum:3E1D PDBsum:3FIK PDBsum:3IZT PDBsum:3IZU
PDBsum:3J01 PDBsum:3KCR PDBsum:487D KO:K02863 ProtClustDB:PRK05424
HAMAP:MF_01318_B PIR:S12573 RefSeq:NP_418411.1 RefSeq:YP_491477.1
ProteinModelPortal:P0A7L0 SMR:P0A7L0 DIP:DIP-35746N IntAct:P0A7L0
MINT:MINT-1268287 SWISS-2DPAGE:P0A7L0 PaxDb:P0A7L0 PRIDE:P0A7L0
EnsemblBacteria:EBESCT00000004739 EnsemblBacteria:EBESCT00000018368
GeneID:12930515 GeneID:948483 KEGG:ecj:Y75_p3213 KEGG:eco:b3984
PATRIC:32123489 EchoBASE:EB0857 EcoGene:EG10864
BioCyc:EcoCyc:EG10864-MONOMER BioCyc:ECOL316407:JW3947-MONOMER
EvolutionaryTrace:P0A7L0 Genevestigator:P0A7L0 Uniprot:P0A7L0
Length = 234
Score = 158 (60.7 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 39/130 (30%), Positives = 66/130 (50%)
Query: 175 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKA 234
+K ++ D+ +AI +K A A F E+V+ V L I RK++ VRG LPHG ++
Sbjct: 13 EKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRS 72
Query: 235 VRVXXXXXXXXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKIL 294
VRV +VG +L ++I G+++ + ++ M + ++ ++L
Sbjct: 73 VRVAVFTQGANAEAAKAAGAELVGMEDLADQI-KKGEMNFDVVIASPDAMRVVGQLGQVL 131
Query: 295 NQHGLMPNPK 304
GLMPNPK
Sbjct: 132 GPRGLMPNPK 141
>UNIPROTKB|Q9KV33 [details] [associations]
symbol:rplA "50S ribosomal protein L1" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR002143 InterPro:IPR005878
InterPro:IPR016094 InterPro:IPR016095 InterPro:IPR023674
Pfam:PF00687 PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 GO:GO:0015934 SUPFAM:SSF56808
eggNOG:COG0081 Gene3D:3.30.190.20 Gene3D:3.40.50.790
InterPro:IPR023673 OMA:AKGRYVK TIGRFAMs:TIGR01169 KO:K02863
ProtClustDB:PRK05424 HAMAP:MF_01318_B PIR:C82338 RefSeq:NP_229979.1
ProteinModelPortal:Q9KV33 SMR:Q9KV33 GeneID:2615091 KEGG:vch:VC0325
PATRIC:20079707 Uniprot:Q9KV33
Length = 233
Score = 151 (58.2 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 36/121 (29%), Positives = 60/121 (49%)
Query: 184 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVXXXXXX 243
D+ +A+ +K A A F E+V+ V L I RK++ VRG LPHG + +RV
Sbjct: 22 DINEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRDIRVAVFTQG 81
Query: 244 XXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNP 303
+VG +E + ++ G+++ + ++ M + ++ IL GLMPNP
Sbjct: 82 ANAEAAKAAGAELVG-MEDLADLVKKGEMNFDVVIASPDAMRVVGQLGTILGPRGLMPNP 140
Query: 304 K 304
K
Sbjct: 141 K 141
>TIGR_CMR|VC_0325 [details] [associations]
symbol:VC_0325 "ribosomal protein L1" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR002143 InterPro:IPR005878 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687
PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 GO:GO:0015934 SUPFAM:SSF56808 eggNOG:COG0081
Gene3D:3.30.190.20 Gene3D:3.40.50.790 InterPro:IPR023673
OMA:AKGRYVK TIGRFAMs:TIGR01169 KO:K02863 ProtClustDB:PRK05424
HAMAP:MF_01318_B PIR:C82338 RefSeq:NP_229979.1
ProteinModelPortal:Q9KV33 SMR:Q9KV33 GeneID:2615091 KEGG:vch:VC0325
PATRIC:20079707 Uniprot:Q9KV33
Length = 233
Score = 151 (58.2 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 36/121 (29%), Positives = 60/121 (49%)
Query: 184 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVXXXXXX 243
D+ +A+ +K A A F E+V+ V L I RK++ VRG LPHG + +RV
Sbjct: 22 DINEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRDIRVAVFTQG 81
Query: 244 XXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNP 303
+VG +E + ++ G+++ + ++ M + ++ IL GLMPNP
Sbjct: 82 ANAEAAKAAGAELVG-MEDLADLVKKGEMNFDVVIASPDAMRVVGQLGTILGPRGLMPNP 140
Query: 304 K 304
K
Sbjct: 141 K 141
>TIGR_CMR|CPS_4772 [details] [associations]
symbol:CPS_4772 "ribosomal protein L1" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR002143 InterPro:IPR005878 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687
PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417 GO:GO:0006412
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 GO:GO:0015934 SUPFAM:SSF56808 eggNOG:COG0081
Gene3D:3.30.190.20 Gene3D:3.40.50.790 InterPro:IPR023673
HOGENOM:HOG000207015 OMA:AKGRYVK TIGRFAMs:TIGR01169 KO:K02863
ProtClustDB:PRK05424 HAMAP:MF_01318_B RefSeq:YP_271416.1
ProteinModelPortal:Q47UV6 SMR:Q47UV6 STRING:Q47UV6 GeneID:3518789
KEGG:cps:CPS_4772 PATRIC:21472361
BioCyc:CPSY167879:GI48-4778-MONOMER Uniprot:Q47UV6
Length = 232
Score = 147 (56.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 37/121 (30%), Positives = 61/121 (50%)
Query: 184 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVXXXXXX 243
D+ +A+ +K A A F E+V+ V L I RK++ VRG LP+G + VRV
Sbjct: 22 DINEAVSLLKEFATANFRESVDVAVNLGIDARKSDQNVRGATVLPNGTGREVRVAVFTQG 81
Query: 244 XXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNP 303
IVG +L ++ +G+++ + ++ M + ++ +IL GLMPNP
Sbjct: 82 ENAEKAKAAGADIVGMEDLAAQV-KAGEMNFDVVIASPDAMRVVGQLGQILGPRGLMPNP 140
Query: 304 K 304
K
Sbjct: 141 K 141
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.130 0.367 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 304 265 0.00093 114 3 11 23 0.37 34
32 0.50 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 562 (60 KB)
Total size of DFA: 163 KB (2097 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.46u 0.13s 23.59t Elapsed: 00:00:01
Total cpu time: 23.47u 0.13s 23.60t Elapsed: 00:00:01
Start: Sat May 11 01:23:02 2013 End: Sat May 11 01:23:03 2013