Query 022012
Match_columns 304
No_of_seqs 147 out of 994
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 12:40:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u42_A 50S ribosomal protein L 100.0 1.7E-41 5.7E-46 308.4 12.8 129 175-304 13-142 (229)
2 3qoy_A 50S ribosomal protein L 100.0 4.2E-40 1.4E-44 301.6 12.5 129 175-304 13-145 (242)
3 2wwq_5 50S ribosomal protein L 100.0 4E-39 1.4E-43 293.4 13.1 129 175-304 13-141 (234)
4 3bbo_D Ribosomal protein L1; l 100.0 6.3E-39 2.1E-43 307.0 10.1 147 157-304 103-255 (352)
5 2zkr_5 60S ribosomal protein L 100.0 4.6E-35 1.6E-39 262.6 7.9 120 184-304 5-133 (212)
6 3j21_A 50S ribosomal protein L 100.0 5.2E-35 1.8E-39 262.9 5.4 120 184-304 7-135 (216)
7 1i2a_A 50S ribosomal protein L 100.0 4.9E-34 1.7E-38 257.0 9.7 118 185-304 6-133 (219)
8 1mzp_A 50S ribosomal protein L 100.0 4.4E-33 1.5E-37 250.5 9.4 118 185-304 8-138 (217)
9 3iz5_A 60S ribosomal protein L 100.0 8.7E-34 3E-38 254.5 -9.5 119 184-304 8-137 (216)
10 3o58_A L10A, 60S ribosomal pro 100.0 5.6E-33 1.9E-37 249.4 -9.6 119 184-304 8-138 (217)
11 2ftc_A Mitochondrial ribosomal 99.9 1E-26 3.5E-31 205.3 10.2 97 203-304 2-100 (189)
12 2ov7_A 50S ribosomal protein L 99.2 1.1E-11 3.9E-16 105.4 7.5 56 175-230 12-67 (137)
13 3iz5_A 60S ribosomal protein L 56.8 3.5 0.00012 36.5 1.2 16 288-304 117-132 (216)
14 3g9q_A Ferrichrome-binding pro 49.3 20 0.00069 30.9 4.9 66 222-294 5-95 (279)
15 1nsj_A PRAI, phosphoribosyl an 45.8 6.9 0.00024 34.3 1.3 26 234-259 3-28 (205)
16 1v5x_A PRA isomerase, phosphor 45.1 7.1 0.00024 34.2 1.3 25 235-259 3-27 (203)
17 3be6_A Putative iron compound- 35.0 41 0.0014 29.1 4.5 32 224-258 13-44 (297)
18 3nbm_A PTS system, lactose-spe 33.1 23 0.00079 28.1 2.4 61 232-298 4-78 (108)
19 4aaj_A N-(5'-phosphoribosyl)an 32.5 15 0.00052 32.7 1.4 32 227-259 15-46 (228)
20 1p0f_A NADP-dependent alcohol 32.2 1.1E+02 0.0038 27.6 7.1 61 236-297 218-285 (373)
21 2h6e_A ADH-4, D-arabinose 1-de 31.7 41 0.0014 30.1 4.1 46 236-283 198-248 (344)
22 3gqv_A Enoyl reductase; medium 31.6 77 0.0026 28.8 6.0 45 236-282 191-240 (371)
23 2d00_A V-type ATP synthase sub 30.5 84 0.0029 24.8 5.3 60 234-293 3-67 (109)
24 3uko_A Alcohol dehydrogenase c 29.7 75 0.0026 28.8 5.6 60 236-296 220-286 (378)
25 1pl8_A Human sorbitol dehydrog 29.6 1E+02 0.0035 27.7 6.4 63 236-299 198-268 (356)
26 2fzw_A Alcohol dehydrogenase c 29.6 97 0.0033 27.9 6.3 61 236-297 217-284 (373)
27 4dvj_A Putative zinc-dependent 29.6 78 0.0027 28.8 5.6 65 235-299 198-265 (363)
28 1e2b_A Enzyme IIB-cellobiose; 29.0 1E+02 0.0035 23.9 5.5 56 235-295 4-72 (106)
29 1e3i_A Alcohol dehydrogenase, 28.9 93 0.0032 28.1 6.0 61 236-297 222-289 (376)
30 1f8f_A Benzyl alcohol dehydrog 28.0 40 0.0014 30.5 3.4 47 236-283 217-268 (371)
31 1pii_A N-(5'phosphoribosyl)ant 27.8 21 0.00072 35.1 1.6 26 234-259 256-281 (452)
32 2vn8_A Reticulon-4-interacting 27.0 1.2E+02 0.0042 27.4 6.4 62 236-299 210-275 (375)
33 2jhf_A Alcohol dehydrogenase E 26.9 1.4E+02 0.0049 26.9 6.9 61 236-297 218-285 (374)
34 1cdo_A Alcohol dehydrogenase; 26.8 1.5E+02 0.0051 26.7 7.0 60 236-297 219-286 (374)
35 2l2q_A PTS system, cellobiose- 26.4 60 0.0021 25.0 3.7 51 234-289 4-67 (109)
36 4b8y_A FHUD2; transport protei 26.3 63 0.0022 27.8 4.2 32 225-260 16-47 (277)
37 1vj0_A Alcohol dehydrogenase, 25.8 63 0.0021 29.5 4.3 47 236-282 222-276 (380)
38 2qai_A V-type ATP synthase sub 25.6 86 0.003 25.1 4.6 54 235-288 1-63 (111)
39 4h59_A PIAA, iron-compound ABC 25.1 63 0.0022 27.5 4.0 33 222-258 13-45 (308)
40 2fk8_A Methoxy mycolic acid sy 25.1 1.3E+02 0.0044 26.1 6.1 28 273-300 155-190 (318)
41 3tlk_A Ferrienterobactin-bindi 24.4 74 0.0025 28.2 4.4 33 222-258 37-69 (326)
42 4eez_A Alcohol dehydrogenase 1 23.9 63 0.0022 28.6 3.8 46 235-280 189-239 (348)
43 3jv7_A ADH-A; dehydrogenase, n 23.8 48 0.0016 29.6 3.1 48 236-283 198-249 (345)
44 3ip1_A Alcohol dehydrogenase, 22.5 1.1E+02 0.0036 28.2 5.2 48 236-283 240-292 (404)
45 3fpc_A NADP-dependent alcohol 22.3 52 0.0018 29.5 3.0 47 236-282 193-244 (352)
46 3fbg_A Putative arginate lyase 22.2 48 0.0017 29.7 2.7 47 236-282 177-226 (346)
47 2ov6_A V-type ATP synthase sub 21.8 58 0.002 25.3 2.8 55 235-289 1-60 (101)
48 3aon_B V-type sodium ATPase su 21.7 30 0.001 27.8 1.2 57 235-292 3-64 (115)
49 3r5t_A Ferric vibriobactin ABC 21.1 73 0.0025 27.9 3.6 33 224-260 16-48 (305)
No 1
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=100.00 E-value=1.7e-41 Score=308.38 Aligned_cols=129 Identities=43% Similarity=0.671 Sum_probs=124.0
Q ss_pred cccCCCCccCHHHHHHHHHHHcccCCCccEEEEEEEccCCCCCCceeeeEEEcCCCCCCCcEEEEEcCchhHHHHHHcCC
Q 022012 175 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGA 254 (304)
Q Consensus 175 ~k~ek~~~ysl~EAIr~lke~a~rkF~ETVEL~I~LnvD~kK~d~~~rGsV~LPh~~gK~~KIlVFadgd~aeeAkeAGA 254 (304)
.+.+....|++.|||+++|+.+.++|+||||++|+|++|++|++++|||+|.|||++|++.||||||+++.+++|++|||
T Consensus 13 ~~~d~~k~y~~~eAi~~lk~~~~~kF~etvel~i~L~vd~~k~dq~vrg~v~LP~g~gk~~kV~Vfa~~~~~~eAk~aGA 92 (229)
T 3u42_A 13 EKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGA 92 (229)
T ss_dssp GSSCTTCCBCHHHHHHHHHHHCCSSSCCEEEEEEEESSCTTCGGGCCEEEEECSSSCSTTSCEEEECCTHHHHHHHHTTC
T ss_pred hccCccCCCCHHHHHHHHHHhCCCCCCccEEEEEEEccCCCCCCCceeEEEECCCCCCCceEEEEecChHhHHHHHhcCC
Confidence 45567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeechHHHHHHHHhCCcccccEEEEcCcchhHHH-hhhhccCCCCCCCCCC
Q 022012 255 DIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLF-KISKILNQHGLMPNPK 304 (304)
Q Consensus 255 d~VGgeELIeKIkk~gkLdFD~~IATpdmMpkL~-kLGriLGPRGLMPnpK 304 (304)
++||++|||++|+ +||++||+||||||||++|+ +||++|||||||||||
T Consensus 93 d~vG~~dLi~kIk-~g~~~fD~~iAtpd~m~~vg~~LG~iLGPrGlMPnpk 142 (229)
T 3u42_A 93 DYVGGEEIIQKIL-DGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPK 142 (229)
T ss_dssp SEEECTHHHHHHH-TTCCCCSEEEECGGGHHHHHHHHHHHHHHHTCCCCGG
T ss_pred ceeCcHHHHHHHh-cCCccccEEEEchHHHHHHHHhhccccccccccccCC
Confidence 9999999999998 79999999999999999998 5999999999999986
No 2
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=100.00 E-value=4.2e-40 Score=301.61 Aligned_cols=129 Identities=41% Similarity=0.653 Sum_probs=123.2
Q ss_pred cccCCCCccCHHHHHHHHHHHcc---cCCCccEEEEEEEccCCCCCCceeeeEEEcCCCCCCCcEEEEEcCchhHHHHHH
Q 022012 175 KKKESRPVLDLMDAIKQVKANAK---ATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARA 251 (304)
Q Consensus 175 ~k~ek~~~ysl~EAIr~lke~a~---rkF~ETVEL~I~LnvD~kK~d~~~rGsV~LPh~~gK~~KIlVFadgd~aeeAke 251 (304)
.+.+....|++.|||+++++.+. ++|+||||++|+|+||++|++++|||+|.|||++|++.||||||+++++++|++
T Consensus 13 ~~~~~~~~y~l~eAi~~~k~~~~~~~rkF~etVel~i~L~vDp~k~d~~vrg~V~LPh~~gk~~kV~Vfa~~~~~~eAk~ 92 (242)
T 3qoy_A 13 KLVDRNKRYTLEEAVDLLKKMEEVLQRRFDETVELAMRLNVDPRYADQMVRGSVVLPHGLGKPIKVVVFAEGEYAKKAEE 92 (242)
T ss_dssp HTSCTTCCBCHHHHHHHHHHHHHHHCCSSCCEEEEEEEESCCTTSGGGCCEEEEECSCCCSSCCCEEEECCHHHHHHHHH
T ss_pred HhccccCccCHHHHHHHHHhhcccccCCCCCcEEEEEEeccCCCCCCCccceEecCCCCCCCCcEEEEEcCHHHHHHHHH
Confidence 45677889999999999999884 499999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeechHHHHHHH-HhCCcccccEEEEcCcchhHHHhhhhccCCCCCCCCCC
Q 022012 252 AGADIVGGLELIEEI-ASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPK 304 (304)
Q Consensus 252 AGAd~VGgeELIeKI-kk~gkLdFD~~IATpdmMpkL~kLGriLGPRGLMPnpK 304 (304)
+||++||++|||++| + ++|++||+||||++||++|++|||+|||||||||||
T Consensus 93 aGad~vg~~dLi~ki~k-~g~~~fD~~iAtpd~m~~l~~LGriLGPrGlmP~pk 145 (242)
T 3qoy_A 93 AGADYVGGDELINKILK-EEWTDFDVAIATPEMMPKVAKLGRILGPRGLMPSPK 145 (242)
T ss_dssp TTCSEEESHHHHHHHHH-HTCCCCSEEEECTTTHHHHGGGHHHHGGGTCSCCGG
T ss_pred cCCCEECcHHHHHHHHh-CCCccCCEEEECHHHHHHHHHHhHHhccccCCCccc
Confidence 999999999999999 6 589999999999999999999999999999999986
No 3
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=100.00 E-value=4e-39 Score=293.44 Aligned_cols=129 Identities=39% Similarity=0.631 Sum_probs=124.1
Q ss_pred cccCCCCccCHHHHHHHHHHHcccCCCccEEEEEEEccCCCCCCceeeeEEEcCCCCCCCcEEEEEcCchhHHHHHHcCC
Q 022012 175 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGA 254 (304)
Q Consensus 175 ~k~ek~~~ysl~EAIr~lke~a~rkF~ETVEL~I~LnvD~kK~d~~~rGsV~LPh~~gK~~KIlVFadgd~aeeAkeAGA 254 (304)
.+.+.+..|++.|||+++++.+.++|+||||++|+|+||++|++++|||+|.|||++|++.+|||||+++++++|+++||
T Consensus 13 ~~~~~~~~y~~~eAv~~lk~~~~~kF~etvel~i~L~vdp~k~dq~vrg~V~LPh~~~k~~rV~Vfa~~~~~~~Ak~aGa 92 (234)
T 2wwq_5 13 EKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGA 92 (234)
T ss_dssp TTSCCSSEECHHHHHHHHHHTCCCSSCCEEEEEEEECSCCCSSTTSCCEEEECSSCCSSCCCEEEECSSSCHHHHHHHTC
T ss_pred hhccccCccCHHHHHHHHHHhccCCCCceEEEEEEECCCCcccCcccceEEeCCCCCCCCcEEEEEcCchhHHHHHHcCC
Confidence 45677899999999999999889999999999999999999989999999999999999999999999999999999999
Q ss_pred CeechHHHHHHHHhCCcccccEEEEcCcchhHHHhhhhccCCCCCCCCCC
Q 022012 255 DIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPK 304 (304)
Q Consensus 255 d~VGgeELIeKIkk~gkLdFD~~IATpdmMpkL~kLGriLGPRGLMPnpK 304 (304)
++||++|||++|+ ++|++||+||||++||++|++||++|||||||||||
T Consensus 93 d~vg~edLi~kik-~~~~~fD~~iAtp~~m~~l~~LGkiLgprGlmP~pk 141 (234)
T 2wwq_5 93 ELVGMEDLADQIK-KGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPK 141 (234)
T ss_dssp SEECSHHHHHHHH-HTCCCSSEEEECHHHHHHTTSSCSCCCSSCCSCCTT
T ss_pred CEEcHHHHHHHHH-cCcccCCEEEECHHHHHHHHHHhhhhccCCCCCCcc
Confidence 9999999999998 588999999999999999999999999999999997
No 4
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=6.3e-39 Score=306.98 Aligned_cols=147 Identities=39% Similarity=0.631 Sum_probs=125.5
Q ss_pred hhhhcccCCCCcccc------ccccccCCCCccCHHHHHHHHHHHcccCCCccEEEEEEEccCCCCCCceeeeEEEcCCC
Q 022012 157 PEQAQVSVPYPLLIK------PESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHG 230 (304)
Q Consensus 157 ~~~~~~~~p~p~l~k------~~s~k~ek~~~ysl~EAIr~lke~a~rkF~ETVEL~I~LnvD~kK~d~~~rGsV~LPh~ 230 (304)
|+++|..++.+...| ....+.+....|++.|||+++++.+.++|+||||++|+||||++|.+++|||+|.|||+
T Consensus 103 ~~~~~~~~~~k~m~k~~K~~~~~~~~~d~~~~Y~l~EAi~llK~~~~~KFdETVEl~I~L~vDpkk~dq~vRGtV~LPhg 182 (352)
T 3bbo_D 103 PKKGKAALPLKSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKG 182 (352)
T ss_dssp -------------CCCCCSSTTTTTSCCSSSCCCTTTTHHHHSTTCCSSSCCEECCEEEECSCTTSSTTCCEEEECCTTT
T ss_pred ccccccccchhhhhhhhHHHHHHHhcccccCCCCHHHHHHHHHhccccCCCceEEEEEEeCCCCcccccccceeecCCCC
Confidence 688888888766543 12245566789999999999999999999999999999999999989999999999999
Q ss_pred CCCCcEEEEEcCchhHHHHHHcCCCeechHHHHHHHHhCCcccccEEEEcCcchhHHHhhhhccCCCCCCCCCC
Q 022012 231 DKKAVRVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPK 304 (304)
Q Consensus 231 ~gK~~KIlVFadgd~aeeAkeAGAd~VGgeELIeKIkk~gkLdFD~~IATpdmMpkL~kLGriLGPRGLMPnpK 304 (304)
+|+..||||||+++++++|+++||++||++||+++|+ ++|++||+||||++||++|++||++|||||||||||
T Consensus 183 tgk~~kVcVfa~ge~~eeAk~AGAdvVG~edLikkIK-kg~~dFD~fIAtpdmM~~lgrLGkiLGPRGlMPnPk 255 (352)
T 3bbo_D 183 TGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIK-GGFMDFDKLIATSDMMAKVASLGRILGPRGLMPTPK 255 (352)
T ss_dssp SSSSSCEEEECCTTTTHHHHTTTCSEEECTTTHHHHT-TTCCCCSEEEECSSSHHHHGGGGGTTTTTTCSCCTT
T ss_pred CCCccEEEEEeCchhHHHHHHcCCCccCHHHHHHHHH-hchhhcCEEEECHHHHHHHHhhcccccccCCCCCCc
Confidence 9999999999999999999999999999999999998 699999999999999999999999999999999997
No 5
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=4.6e-35 Score=262.59 Aligned_cols=120 Identities=24% Similarity=0.408 Sum_probs=112.8
Q ss_pred CHHHHHH-HHHHHcccCCCccEEEEEEE-ccCCCCCCceeeeEEEcCCCCCCCcEEEEEcCchhHHHHHHcCCCeechHH
Q 022012 184 DLMDAIK-QVKANAKATFDETVEAHVRL-AIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGADIVGGLE 261 (304)
Q Consensus 184 sl~EAIr-~lke~a~rkF~ETVEL~I~L-nvD~kK~d~~~rGsV~LPh~~gK~~KIlVFadgd~aeeAkeAGAd~VGgeE 261 (304)
++.|||+ ++++.+.++|+||||++|+| +||+++++++|||+|.|||++++..+|||||+++++++|+++||++||++|
T Consensus 5 ~l~eAv~~llk~~~~~kf~etvel~i~Lk~~dp~k~d~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa~~vg~~~ 84 (212)
T 2zkr_5 5 EIENAVSRALEDAPERNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQETTIVVFAEGETALRAEEVADDVLDEDE 84 (212)
T ss_dssp THHHHHHHHHHTSCCCSSCCEEEEEEEESSCCTTTTTTCCCCEEECSSCCSSCCCEEEECCHHHHHHHHHHTSCCCCHHH
T ss_pred HHHHHHHHHHHhcccCCCCceEEEEEEeCCCCCCcccccCceEEECCCCCCCCcEEEEEcCchhHHHHHhcCCCEeCHHH
Confidence 4799999 77877799999999999999 999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC-----Cc-ccccEEEEcCcchhHHHh-hhhccCCCCCCCCCC
Q 022012 262 LIEEIASS-----GK-LDVEKCFSTRQFMPRLFK-ISKILNQHGLMPNPK 304 (304)
Q Consensus 262 LIeKIkk~-----gk-LdFD~~IATpdmMpkL~k-LGriLGPRGLMPnpK 304 (304)
| ++|+++ ++ .+||+||||++||++|++ ||++|||||||||||
T Consensus 85 L-~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LGk~LgprgkmP~pk 133 (212)
T 2zkr_5 85 L-EELGGDDDAAKDLADDTDFFIAEKGLMQDIGRYLGTVLGPRGKMPEPL 133 (212)
T ss_dssp H-HHHTTCHHHHHHHHHHCSEEEECTTTHHHHHHHTHHHHHHHTCCEEEC
T ss_pred H-HHHHhhHHhhhcccccCCEEEECHHHHHHHHHHHhhhccccCCcCccc
Confidence 9 999732 56 599999999999999999 999999999999986
No 6
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=5.2e-35 Score=262.88 Aligned_cols=120 Identities=34% Similarity=0.490 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHHc-ccCCCccEEEEEEEc-cCCCCCCceeeeEEEcCCCCCCCcEEEEEcCchhHHHHHHcCCCeechHH
Q 022012 184 DLMDAIKQVKANA-KATFDETVEAHVRLA-IPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGADIVGGLE 261 (304)
Q Consensus 184 sl~EAIr~lke~a-~rkF~ETVEL~I~Ln-vD~kK~d~~~rGsV~LPh~~gK~~KIlVFadgd~aeeAkeAGAd~VGgeE 261 (304)
++.|||+.+++.+ .++|+|||||+|+|+ ||++|++++|||+|.|||++|++.||||||+++++++|+++||++||++|
T Consensus 7 ~~~eav~~~~~~~~~~kF~etvel~i~L~~~dp~k~d~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~Ak~aGad~vg~e~ 86 (216)
T 3j21_A 7 KIVKAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARKLGLDVISSAE 86 (216)
T ss_dssp SCCCCTTTTCCCCCCSSSCCEEEEEEEESSCCSSSGGGSCCEEEECSSCCSSCCCEEECCCSHHHHHHHHHTCCCCCTTH
T ss_pred HHHHHHHHHHHhCcccCCCceEEEEEEECCCCCCCcCceeeEEEeCCCCCCCCcEEEEECCHHHHHHHHhcCCCccCHHH
Confidence 3678999999888 699999999999995 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC------CcccccEEEEcCcchhHHHh-hhhccCCCCCCCCCC
Q 022012 262 LIEEIASS------GKLDVEKCFSTRQFMPRLFK-ISKILNQHGLMPNPK 304 (304)
Q Consensus 262 LIeKIkk~------gkLdFD~~IATpdmMpkL~k-LGriLGPRGLMPnpK 304 (304)
| ++|.++ ++.+||+||||++||++|++ ||++||||||||+||
T Consensus 87 L-~k~~k~~k~~kkl~~~fD~~lA~~~im~~l~k~LGk~LgprgkmP~pk 135 (216)
T 3j21_A 87 L-EEIASSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVV 135 (216)
T ss_dssp H-HHHHHCCCSSSCCSSSCSEEEBCGGGHHHHHHHHHHHHTTSSSSCCTT
T ss_pred H-HHHhcCHHHHhhhhhhCCEEEeCHHHHHHHHHHHHHHhccCCccCCCc
Confidence 8 788642 23599999999999999999 999999999999996
No 7
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=100.00 E-value=4.9e-34 Score=256.99 Aligned_cols=118 Identities=25% Similarity=0.391 Sum_probs=109.7
Q ss_pred HHHHHH-HHHHHcccCCCccEEEEEEE-ccCCCCCC-ceeeeEEEcCCCCCCCcEEEEEcCchhHHHHHHcCCCeechHH
Q 022012 185 LMDAIK-QVKANAKATFDETVEAHVRL-AIPPRKTE-LIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGADIVGGLE 261 (304)
Q Consensus 185 l~EAIr-~lke~a~rkF~ETVEL~I~L-nvD~kK~d-~~~rGsV~LPh~~gK~~KIlVFadgd~aeeAkeAGAd~VGgeE 261 (304)
+.|||+ +++..+.++|+|||||+|+| ++|++ .+ ++|||+|.|||+++++.+|||||+++++++|+++||++||++|
T Consensus 6 l~eAv~~llk~~~~~kf~etVel~i~LK~~dp~-~d~q~vrg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa~~vg~~~ 84 (219)
T 1i2a_A 6 LLQAVKEARELAKPRNFTQSFEFIATLKEIDMR-KPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLTVIRKEE 84 (219)
T ss_dssp HHHHHHHHHHHSCCCSSCCEEEEEEEESSCCTT-SGGGCCEEEEECTTCCSSCCCEEEECCHHHHHHHHHTTCEEECHHH
T ss_pred HHHHHHHHHHhcccCCCCceEEEEEEecccCCc-ccccccceEEecCCCCCCCcEEEEEcCchhHHHHHHCCCCEEcHHH
Confidence 689999 77776799999999999999 99999 57 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC-----Cc-ccccEEEEcCcchhHHHh-hhhccCCCCCCCCCC
Q 022012 262 LIEEIASS-----GK-LDVEKCFSTRQFMPRLFK-ISKILNQHGLMPNPK 304 (304)
Q Consensus 262 LIeKIkk~-----gk-LdFD~~IATpdmMpkL~k-LGriLGPRGLMPnpK 304 (304)
| ++|+++ ++ .+||+||||++||++|++ ||++|||||||||||
T Consensus 85 L-~ki~~~kk~~r~l~~~fD~~lA~~~~m~~l~k~LGk~LgprgkmP~pk 133 (219)
T 1i2a_A 85 I-EELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPV 133 (219)
T ss_dssp H-HHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHHHGGGTCCCEEE
T ss_pred H-HHHHhhhhhhhhchhhCCEEEECHHHHHHHHHHHhhhhcccCCCCccc
Confidence 9 999753 34 489999999999999999 999999999999985
No 8
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=99.98 E-value=4.4e-33 Score=250.51 Aligned_cols=118 Identities=23% Similarity=0.320 Sum_probs=109.3
Q ss_pred HHHHHHHHHHH---cccCCCccEEEEEEE-ccCCCCCC-ceeeeEEEcCCCCCCCcEEEEEcCchhHHHHHHcCCC-eec
Q 022012 185 LMDAIKQVKAN---AKATFDETVEAHVRL-AIPPRKTE-LIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGAD-IVG 258 (304)
Q Consensus 185 l~EAIr~lke~---a~rkF~ETVEL~I~L-nvD~kK~d-~~~rGsV~LPh~~gK~~KIlVFadgd~aeeAkeAGAd-~VG 258 (304)
+.+||+.|++. +.++|+||||++|+| ++|++ .+ +++||+|.|||++++..+|||||+++++++|+++||+ +||
T Consensus 8 l~~Av~~ll~~~~~~~~kf~etvel~i~LK~~dp~-~d~q~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGad~~vg 86 (217)
T 1mzp_A 8 LIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMK-KGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKASPKVVIT 86 (217)
T ss_dssp HHHHHHHHHSTTTCCCCSSCCEEEEEEEESSCCGG-GTTTCCEEEEECSSCCSSCCCEEEECCHHHHHHHHHTCCSEECC
T ss_pred HHHHHHHHHhhccccccCCCccEEEEEEecCCCCc-ccccccceeecCCCCCCCCcEEEEEcCchhHHHHHhcCCCeeeC
Confidence 68999999875 378999999999999 99999 57 8999999999999999999999999999999999998 999
Q ss_pred hHHHHHHHHhC-----Cc-ccccEEEEcCcchhHHHh-hhhccCCCCCCCCCC
Q 022012 259 GLELIEEIASS-----GK-LDVEKCFSTRQFMPRLFK-ISKILNQHGLMPNPK 304 (304)
Q Consensus 259 geELIeKIkk~-----gk-LdFD~~IATpdmMpkL~k-LGriLGPRGLMPnpK 304 (304)
++|| ++|+++ ++ .+||+||||++||++|++ ||++||||||||+||
T Consensus 87 ~~~L-~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LG~~LgprgkmP~p~ 138 (217)
T 1mzp_A 87 REEL-QKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTPL 138 (217)
T ss_dssp HHHH-HHHTTCHHHHHHHHHSCSEEEECGGGHHHHHHHTHHHHGGGTCCEEEC
T ss_pred HHHH-HHHHhhHHhhhhchhhCCEEEECHHHHHHHHHHHhhhccccCCCCccc
Confidence 9999 999742 45 499999999999999999 999999999999986
No 9
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=99.97 E-value=8.7e-34 Score=254.50 Aligned_cols=119 Identities=24% Similarity=0.381 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHHc---ccCCCccEEEEEEE-ccCCCCCCceeeeEEEcCCCCCCCcEEEEEcCchhHHHHHHcCCCeech
Q 022012 184 DLMDAIKQVKANA---KATFDETVEAHVRL-AIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGADIVGG 259 (304)
Q Consensus 184 sl~EAIr~lke~a---~rkF~ETVEL~I~L-nvD~kK~d~~~rGsV~LPh~~gK~~KIlVFadgd~aeeAkeAGAd~VGg 259 (304)
++.|||+.+++.+ .++|+|||||+|+| |||+++ +++|||+|.|||++|++.+|||||+++.+++|+++||++||+
T Consensus 8 ~l~eav~~~~~~~~~~~~kF~etvel~i~Lk~idp~k-d~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~A~~aGa~~vg~ 86 (216)
T 3iz5_A 8 AVKDAITQIVGEAREKKRKFTETVELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMRVCMLGDAQHVDQAEKMGLDYMDV 86 (216)
T ss_dssp SSCEECTTTSSSSTTHHHHCCCSSCCEEEEEEECCCC-SSSTTCCEECCBCSSCCCCCCCEEEECCTHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHhccccccCCCccEEEEEEecccCccc-ccccceeecCCCCCCCCcEEEEEcChHhHHHHHhccCCEeCH
Confidence 4678999988877 79999999999999 899986 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCc------ccccEEEEcCcchhHHHh-hhhccCCCCCCCCCC
Q 022012 260 LELIEEIASSGK------LDVEKCFSTRQFMPRLFK-ISKILNQHGLMPNPK 304 (304)
Q Consensus 260 eELIeKIkk~gk------LdFD~~IATpdmMpkL~k-LGriLGPRGLMPnpK 304 (304)
+||+++|++ ++ .+||+||||+++|++|++ ||+.|||+|+||+++
T Consensus 87 ~~L~~~~k~-~~~~rkl~~~fD~~lA~~~i~~~l~riLG~~l~p~gk~P~p~ 137 (216)
T 3iz5_A 87 ESLKKMNKN-KKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLV 137 (216)
T ss_dssp ECGGGHHHH-HHTCCCCSEEEECTTTHHHHHHHHHHHHTTTCSCCTTTTCBC
T ss_pred HHHHHHhhc-hHHHHHHHhhCCEEEECHHHHHHHHHHhcccccccCCcCCCc
Confidence 999999974 44 399999999999999999 799999999999985
No 10
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A
Probab=99.96 E-value=5.6e-33 Score=249.38 Aligned_cols=119 Identities=20% Similarity=0.383 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHc----ccCCCccEEEEEEE-ccCCCCCCceeeeEEEcCCCCCCCcEEEEEcCchhHHHHHHcCCCeec
Q 022012 184 DLMDAIKQVKANA----KATFDETVEAHVRL-AIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGADIVG 258 (304)
Q Consensus 184 sl~EAIr~lke~a----~rkF~ETVEL~I~L-nvD~kK~d~~~rGsV~LPh~~gK~~KIlVFadgd~aeeAkeAGAd~VG 258 (304)
.+.+||+.+++.+ .++|+|||||+|+| ++|++| ++++||+|.|||++|++.+|||||+++.+++|+++||++||
T Consensus 8 ~~~~av~~~l~~~~~~~~~kf~etVel~i~Lk~idp~k-d~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~Ak~aGa~~vg 86 (217)
T 3o58_A 8 QVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQR-DKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSCGVDAMS 86 (217)
T ss_dssp THHHHTTSSSSCCSSSSCCSSCCCCCCCCCSCCSCSSS-SSCCSCCCSCCCCCSSCCCCCCCSSTTSSGGGTTTTCCCCC
T ss_pred HHHHHHHHHHHhcccccccCCCccEEEEEEecccCCCC-CCcCCeEEECCCCCCCCcEEEEEcCcHhHHHHHHcCCCEeC
Confidence 4899999888763 78999999999999 999998 99999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCc------ccccEEEEcCcchhHHHh-hhhccCCCCCCCCCC
Q 022012 259 GLELIEEIASSGK------LDVEKCFSTRQFMPRLFK-ISKILNQHGLMPNPK 304 (304)
Q Consensus 259 geELIeKIkk~gk------LdFD~~IATpdmMpkL~k-LGriLGPRGLMPnpK 304 (304)
++||+++|+ +++ .+||+||||++||++|++ ||+.|||+|+||+|+
T Consensus 87 ~~~L~~~~k-~~k~~~~l~~~fD~~iA~~~im~~l~riLG~~l~p~gk~P~p~ 138 (217)
T 3o58_A 87 VDDLKKLNK-NKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPV 138 (217)
T ss_dssp STTTTTTSC-SSSHHHHHHCSSSCCCCCCCCSSCCSSSSSSTTHHHHCSSCCS
T ss_pred HHHHHHHhh-chhHhhhhhhhCCEEEECHHHHHHHHHHhhhhhcccCCcCCCc
Confidence 999999886 443 389999999999999999 999999999999986
No 11
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=99.94 E-value=1e-26 Score=205.30 Aligned_cols=97 Identities=24% Similarity=0.383 Sum_probs=86.2
Q ss_pred cEEEEEEEccCCCCCCceeeeEEEcCCCCCCCc-EEEEEcCc-hhHHHHHHcCCCeechHHHHHHHHhCCcccccEEEEc
Q 022012 203 TVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAV-RVAFFAEG-ADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFST 280 (304)
Q Consensus 203 TVEL~I~LnvD~kK~d~~~rGsV~LPh~~gK~~-KIlVFadg-d~aeeAkeAGAd~VGgeELIeKIkk~gkLdFD~~IAT 280 (304)
.|||++.|.- +|...++||+|.|||++++.. ||||||++ +++++|+++||++||++|||++|+ ++|++||+||||
T Consensus 2 ~ieL~m~l~~--~r~~~~~rg~V~LPhg~~k~~~~V~Vfa~~~~~~~~Ak~aGad~vg~~dLi~ki~-~~~~~fD~~iAt 78 (189)
T 2ftc_A 2 DLTLDMALGK--KKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIW-DDEIVADFYVAV 78 (189)
T ss_pred eEEEEEEecC--CccCcccceEEECCCCCCCCCCEEEEEeCChhHHHHHHHcCCCCcCHHHHHHHHH-cCCccCCEEEEC
Confidence 3677777733 344677799999999987775 99999999 689999999999999999999998 699999999999
Q ss_pred CcchhHHHhhhhccCCCCCCCCCC
Q 022012 281 RQFMPRLFKISKILNQHGLMPNPK 304 (304)
Q Consensus 281 pdmMpkL~kLGriLGPRGLMPnpK 304 (304)
++||++|++||++|||| |||||
T Consensus 79 p~~m~~l~~l~~~Lg~K--mP~pk 100 (189)
T 2ftc_A 79 PEIMPELNRLRKKLNKK--YPKLS 100 (189)
T ss_pred HHHHHHHHHhhccccCC--CCccc
Confidence 99999999999999965 99997
No 12
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A
Probab=99.24 E-value=1.1e-11 Score=105.36 Aligned_cols=56 Identities=45% Similarity=0.717 Sum_probs=52.3
Q ss_pred cccCCCCccCHHHHHHHHHHHcccCCCccEEEEEEEccCCCCCCceeeeEEEcCCC
Q 022012 175 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHG 230 (304)
Q Consensus 175 ~k~ek~~~ysl~EAIr~lke~a~rkF~ETVEL~I~LnvD~kK~d~~~rGsV~LPh~ 230 (304)
.+.+....|++.|||.++++.+.++|+||||++|+||||++|.|++|||+|.|||+
T Consensus 12 ~kv~~~~~y~~~eAi~~~k~~~~~kF~EtVel~i~L~vDprk~dq~vrgtV~LP~g 67 (137)
T 2ov7_A 12 EKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHG 67 (137)
T ss_dssp TTSCTTCCBCHHHHHHHHHHTCCSSSCCEEEEEEEESSCTTCSSCCCEEEEECTTS
T ss_pred HhcCcccccCHHHHHHHHHhcccCCCCccEEEEEEeCCCCccccceeeEEEEcCCC
Confidence 45567789999999999998889999999999999999999999999999999997
No 13
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=56.82 E-value=3.5 Score=36.54 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=13.7
Q ss_pred HhhhhccCCCCCCCCCC
Q 022012 288 FKISKILNQHGLMPNPK 304 (304)
Q Consensus 288 ~kLGriLGPRGLMPnpK 304 (304)
+.||++||| ||||+.|
T Consensus 117 ~~l~riLG~-~l~p~gk 132 (216)
T 3iz5_A 117 KQIPRLLGP-GLNKAGK 132 (216)
T ss_dssp HHHHHHHTT-TCSCCTT
T ss_pred HHHHHHhcc-cccccCC
Confidence 449999999 9999875
No 14
>3g9q_A Ferrichrome-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.60A {Bacillus subtilis subsp} PDB: 3hxp_A
Probab=49.31 E-value=20 Score=30.88 Aligned_cols=66 Identities=23% Similarity=0.349 Sum_probs=36.3
Q ss_pred eeEEEcCCCCCCCcEEEEEcCchhHHHHHHcCCCeechHHH----------------------HHHHHhCCcccccEEEE
Q 022012 222 RGTMNLPHGDKKAVRVAFFAEGADAEEARAAGADIVGGLEL----------------------IEEIASSGKLDVEKCFS 279 (304)
Q Consensus 222 rGsV~LPh~~gK~~KIlVFadgd~aeeAkeAGAd~VGgeEL----------------------IeKIkk~gkLdFD~~IA 279 (304)
.|.|.+|... .||+++... ..+...+.|+.+||..+. +|+|. .++.|.+|+
T Consensus 5 ~G~v~i~~~p---~RIv~l~~~-~~e~l~aLG~~~Vgv~~~~~~~~~~~~~~~~i~~vG~~~n~E~i~---~l~PDlIi~ 77 (279)
T 3g9q_A 5 NGNVKIPKHP---KRVVVMADG-YYGYFKTLGINVVGAPENVFKNPYYKGKTNGVENIGDGTSVEKVI---DLNPDLIIV 77 (279)
T ss_dssp -----CCSSC---SCEEECCGG-GHHHHHHHTCCEEECCGGGGTCTTTTTTCCTTCBCCCSCCHHHHH---TTCCSEEEE
T ss_pred CeeEEecCCC---CEEEEeCcc-cHHHHHHCCCcEEEeecccccchhhHHHhcCCCccCCCCCHHHHh---cCCCCEEEE
Confidence 4688888665 478777643 345566778888875432 12222 248899998
Q ss_pred c---CcchhHHHhhhhcc
Q 022012 280 T---RQFMPRLFKISKIL 294 (304)
Q Consensus 280 T---pdmMpkL~kLGriL 294 (304)
+ .+...+|.++++++
T Consensus 78 ~~~~~~~~~~L~~~~pvv 95 (279)
T 3g9q_A 78 WTTQGADIKKLEKIAPTV 95 (279)
T ss_dssp ECC--CCHHHHHHHSCEE
T ss_pred cCCCHHHHHHHHhhCCEE
Confidence 6 34555555555543
No 15
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=45.79 E-value=6.9 Score=34.27 Aligned_cols=26 Identities=31% Similarity=0.262 Sum_probs=23.2
Q ss_pred CcEEEEEcCchhHHHHHHcCCCeech
Q 022012 234 AVRVAFFAEGADAEEARAAGADIVGG 259 (304)
Q Consensus 234 ~~KIlVFadgd~aeeAkeAGAd~VGg 259 (304)
..|||=+.+.++++.|.++|||++|-
T Consensus 3 ~vKICGit~~eda~~a~~~GaD~iGf 28 (205)
T 1nsj_A 3 RVKICGITNLEDALFSVESGADAVGF 28 (205)
T ss_dssp EEEECCCCSHHHHHHHHHHTCSEEEE
T ss_pred cEEECCCCcHHHHHHHHHcCCCEEEE
Confidence 36899999999999999999999884
No 16
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=45.11 E-value=7.1 Score=34.19 Aligned_cols=25 Identities=32% Similarity=0.195 Sum_probs=22.7
Q ss_pred cEEEEEcCchhHHHHHHcCCCeech
Q 022012 235 VRVAFFAEGADAEEARAAGADIVGG 259 (304)
Q Consensus 235 ~KIlVFadgd~aeeAkeAGAd~VGg 259 (304)
.|||=+.+.++++.|.++|||++|-
T Consensus 3 vKICGit~~eda~~a~~~GaD~iGf 27 (203)
T 1v5x_A 3 VKICGITRLEDALLAEALGAFALGF 27 (203)
T ss_dssp EEECCCCCHHHHHHHHHHTCSEEEE
T ss_pred EEEcCCCcHHHHHHHHHcCCCEEEE
Confidence 6899999999999999999999874
No 17
>3be6_A Putative iron compound-binding protein of ABC TRA family; open form, closed form, group III periplasmic binding protei structural genomics; HET: MSE; 1.82A {Escherichia coli O157} PDB: 3be5_A*
Probab=34.95 E-value=41 Score=29.07 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=19.1
Q ss_pred EEEcCCCCCCCcEEEEEcCchhHHHHHHcCCCeec
Q 022012 224 TMNLPHGDKKAVRVAFFAEGADAEEARAAGADIVG 258 (304)
Q Consensus 224 sV~LPh~~gK~~KIlVFadgd~aeeAkeAGAd~VG 258 (304)
+|.+|... .||.++.+....+...+.|+.+||
T Consensus 13 ~v~i~~~p---~RIv~l~~~~~~e~l~aLG~~~Vg 44 (297)
T 3be6_A 13 KVTVPAHP---KRIVSLHDLDITIPLIELGVPPVA 44 (297)
T ss_dssp EEEEESSC---SSEEESCTTTTHHHHHHTTCCCSE
T ss_pred EEecCCCC---cEEEEecccchhHHHHHCCCceEE
Confidence 57777654 367766533344555666776655
No 18
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=33.11 E-value=23 Score=28.07 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=38.3
Q ss_pred CCCcEEEEEcCc---------hhHHHHHHcCCCee----chHHHHHHHHhCCcc-cccEEEEcCcchhHHHhhhhccCCC
Q 022012 232 KKAVRVAFFAEG---------ADAEEARAAGADIV----GGLELIEEIASSGKL-DVEKCFSTRQFMPRLFKISKILNQH 297 (304)
Q Consensus 232 gK~~KIlVFadg---------d~aeeAkeAGAd~V----GgeELIeKIkk~gkL-dFD~~IATpdmMpkL~kLGriLGPR 297 (304)
.+..||+++|.+ ...+.|++.|.++- +-.+ +. ..+ +||++|..|.+--.+..+-...++.
T Consensus 4 ~~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~----~~--~~~~~~DvvLLgPQV~y~~~~ik~~~~~~ 77 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGA----HY--DIMGVYDLIILAPQVRSYYREMKVDAERL 77 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTS----CT--TTGGGCSEEEECGGGGGGHHHHHHHHTTT
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHH----HH--hhccCCCEEEEChHHHHHHHHHHHHhhhc
Confidence 467899999975 12355666676522 1222 21 223 7999999999887676666665554
Q ss_pred C
Q 022012 298 G 298 (304)
Q Consensus 298 G 298 (304)
|
T Consensus 78 ~ 78 (108)
T 3nbm_A 78 G 78 (108)
T ss_dssp T
T ss_pred C
Confidence 4
No 19
>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}
Probab=32.46 E-value=15 Score=32.73 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=21.0
Q ss_pred cCCCCCCCcEEEEEcCchhHHHHHHcCCCeech
Q 022012 227 LPHGDKKAVRVAFFAEGADAEEARAAGADIVGG 259 (304)
Q Consensus 227 LPh~~gK~~KIlVFadgd~aeeAkeAGAd~VGg 259 (304)
+|++..=.+|||=+.+.++++ |.++|||++|-
T Consensus 15 ~p~~~~M~VKICGit~~ed~~-a~~~gaD~iGf 46 (228)
T 4aaj_A 15 VPRGSHMFVKICGIKSLEELE-IVEKHADATGV 46 (228)
T ss_dssp -----CCEEEECCCCSHHHHH-HHHTTCSEEEE
T ss_pred CCCCCceEEEECCCCcHHHHH-HHHcCCCEEEE
Confidence 455543347999998888775 66899999883
No 20
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=32.24 E-value=1.1e+02 Score=27.55 Aligned_cols=61 Identities=11% Similarity=0.030 Sum_probs=37.0
Q ss_pred EEEEEc-CchhHHHHHHcCCCeech-----HHHHHHHHh-CCcccccEEEEcCcchhHHHhhhhccCCC
Q 022012 236 RVAFFA-EGADAEEARAAGADIVGG-----LELIEEIAS-SGKLDVEKCFSTRQFMPRLFKISKILNQH 297 (304)
Q Consensus 236 KIlVFa-dgd~aeeAkeAGAd~VGg-----eELIeKIkk-~gkLdFD~~IATpdmMpkL~kLGriLGPR 297 (304)
+|.+.+ +.+..+.|++.||+++-. +++.+.|.+ .+. .||++|-+...-..+...-+.|.+.
T Consensus 218 ~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~g-g~Dvvid~~g~~~~~~~~~~~l~~~ 285 (373)
T 1p0f_A 218 RIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNG-GVDYAVECAGRIETMMNALQSTYCG 285 (373)
T ss_dssp EEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHTBCTT
T ss_pred eEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCC-CCCEEEECCCCHHHHHHHHHHHhcC
Confidence 566665 456778899999986532 235555643 122 6999997765433344444555555
No 21
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=31.74 E-value=41 Score=30.08 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=30.1
Q ss_pred EEEEEcC-chhHHHHHHcCCCeech----HHHHHHHHhCCcccccEEEEcCcc
Q 022012 236 RVAFFAE-GADAEEARAAGADIVGG----LELIEEIASSGKLDVEKCFSTRQF 283 (304)
Q Consensus 236 KIlVFad-gd~aeeAkeAGAd~VGg----eELIeKIkk~gkLdFD~~IATpdm 283 (304)
+|.+++. .+..+.|++.||+++-. ++.++++. ++ -.||++|-+...
T Consensus 198 ~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~-~g-~g~D~vid~~g~ 248 (344)
T 2h6e_A 198 TIVGISRSKKHRDFALELGADYVSEMKDAESLINKLT-DG-LGASIAIDLVGT 248 (344)
T ss_dssp EEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHH-TT-CCEEEEEESSCC
T ss_pred EEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhh-cC-CCccEEEECCCC
Confidence 5766764 46678889999987642 34556665 22 258888876553
No 22
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Probab=31.60 E-value=77 Score=28.80 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=30.0
Q ss_pred EEEEEcCchhHHHHHHcCCCeec---hHHHHHHHHh--CCcccccEEEEcCc
Q 022012 236 RVAFFAEGADAEEARAAGADIVG---GLELIEEIAS--SGKLDVEKCFSTRQ 282 (304)
Q Consensus 236 KIlVFadgd~aeeAkeAGAd~VG---geELIeKIkk--~gkLdFD~~IATpd 282 (304)
+|.+.+..+..+.|++.||+++- .+++.+.|.+ ++ .+|++|-+..
T Consensus 191 ~Vi~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g--~~d~v~d~~g 240 (371)
T 3gqv_A 191 IPIATCSPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKN--NLRYALDCIT 240 (371)
T ss_dssp EEEEEECGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTT--CCCEEEESSC
T ss_pred EEEEEeCHHHHHHHHHcCCcEEEECCCchHHHHHHHHccC--CccEEEECCC
Confidence 45555677778899999998653 3455566653 33 3888886554
No 23
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=30.46 E-value=84 Score=24.80 Aligned_cols=60 Identities=17% Similarity=0.193 Sum_probs=41.8
Q ss_pred CcEEEEEcCchhHHHHHHcCCCee---chHHHHHHHHh-CCcccccEEEEcCcchhHHHh-hhhc
Q 022012 234 AVRVAFFAEGADAEEARAAGADIV---GGLELIEEIAS-SGKLDVEKCFSTRQFMPRLFK-ISKI 293 (304)
Q Consensus 234 ~~KIlVFadgd~aeeAkeAGAd~V---GgeELIeKIkk-~gkLdFD~~IATpdmMpkL~k-LGri 293 (304)
..||+|++|.+.+.--+-+|++.+ ..+|+.+.|++ -..=+|-+++-|.++...+.. +-++
T Consensus 3 ~mkiaVIgD~dtv~GFrLaGi~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~ 67 (109)
T 2d00_A 3 PVRMAVIADPETAQGFRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLPDPERAVERL 67 (109)
T ss_dssp CCCEEEEECHHHHHHHHHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCSCHHHHHHHH
T ss_pred ccEEEEEeCHHHHHHHHHcCCeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHHhhHHHHHHH
Confidence 368999999888888888998743 33444444442 001179999999999988875 4444
No 24
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=29.71 E-value=75 Score=28.83 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=36.2
Q ss_pred EEEEEc-CchhHHHHHHcCCCeec-----hHHHHHHHHh-CCcccccEEEEcCcchhHHHhhhhccCC
Q 022012 236 RVAFFA-EGADAEEARAAGADIVG-----GLELIEEIAS-SGKLDVEKCFSTRQFMPRLFKISKILNQ 296 (304)
Q Consensus 236 KIlVFa-dgd~aeeAkeAGAd~VG-----geELIeKIkk-~gkLdFD~~IATpdmMpkL~kLGriLGP 296 (304)
+|.+++ +.+..+.|++.||+++- .+++.+.|.+ .+. .||++|-+..--..+...-+.|.+
T Consensus 220 ~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~g-g~D~vid~~g~~~~~~~~~~~l~~ 286 (378)
T 3uko_A 220 RIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDG-GVDYSFECIGNVSVMRAALECCHK 286 (378)
T ss_dssp CEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHTBCT
T ss_pred eEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCC-CCCEEEECCCCHHHHHHHHHHhhc
Confidence 566666 45677889999998753 2345555543 122 799999765543334333445554
No 25
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=29.62 E-value=1e+02 Score=27.71 Aligned_cols=63 Identities=16% Similarity=0.125 Sum_probs=38.4
Q ss_pred EEEEEc-CchhHHHHHHcCCCeec------hHHHHHHHHh-CCcccccEEEEcCcchhHHHhhhhccCCCCC
Q 022012 236 RVAFFA-EGADAEEARAAGADIVG------GLELIEEIAS-SGKLDVEKCFSTRQFMPRLFKISKILNQHGL 299 (304)
Q Consensus 236 KIlVFa-dgd~aeeAkeAGAd~VG------geELIeKIkk-~gkLdFD~~IATpdmMpkL~kLGriLGPRGL 299 (304)
+|.+.+ +.+..+.|++.||+++- .+++.++|.+ .+ -.||++|-+...-..+...-+.|.+.|.
T Consensus 198 ~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~-~g~D~vid~~g~~~~~~~~~~~l~~~G~ 268 (356)
T 1pl8_A 198 QVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLG-CKPEVTIECTGAEASIQAGIYATRSGGT 268 (356)
T ss_dssp EEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHT-SCCSEEEECSCCHHHHHHHHHHSCTTCE
T ss_pred EEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhC-CCCCEEEECCCChHHHHHHHHHhcCCCE
Confidence 566665 44567889999998652 2566677753 11 2589999776543334444455665553
No 26
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=29.59 E-value=97 Score=27.88 Aligned_cols=61 Identities=11% Similarity=0.042 Sum_probs=37.0
Q ss_pred EEEEEc-CchhHHHHHHcCCCeech-----HHHHHHHHh-CCcccccEEEEcCcchhHHHhhhhccCCC
Q 022012 236 RVAFFA-EGADAEEARAAGADIVGG-----LELIEEIAS-SGKLDVEKCFSTRQFMPRLFKISKILNQH 297 (304)
Q Consensus 236 KIlVFa-dgd~aeeAkeAGAd~VGg-----eELIeKIkk-~gkLdFD~~IATpdmMpkL~kLGriLGPR 297 (304)
+|.+++ +.+..+.|++.||+++-. +++.+.|.. .+. .+|++|-+...-..+...-+.|.+.
T Consensus 217 ~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~-g~D~vid~~g~~~~~~~~~~~l~~~ 284 (373)
T 2fzw_A 217 RIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACHKG 284 (373)
T ss_dssp EEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHTBCTT
T ss_pred eEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCC-CCCEEEECCCcHHHHHHHHHhhccC
Confidence 566665 456778899999986532 235555543 122 6899997765434444444556655
No 27
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=29.58 E-value=78 Score=28.76 Aligned_cols=65 Identities=23% Similarity=0.177 Sum_probs=38.1
Q ss_pred cEEEEEcCc-hhHHHHHHcCCCeech--HHHHHHHHhCCcccccEEEEcCcchhHHHhhhhccCCCCC
Q 022012 235 VRVAFFAEG-ADAEEARAAGADIVGG--LELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGL 299 (304)
Q Consensus 235 ~KIlVFadg-d~aeeAkeAGAd~VGg--eELIeKIkk~gkLdFD~~IATpdmMpkL~kLGriLGPRGL 299 (304)
.+|.+.+.. +..+.|++.||+++-. +++.+++.+.+.-.+|++|-+..--..+...-+.|.+.|.
T Consensus 198 ~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~ 265 (363)
T 4dvj_A 198 LTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQGR 265 (363)
T ss_dssp SEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSCHHHHHHHHHHHSCTTCE
T ss_pred CEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCCchhhHHHHHHHhcCCCE
Confidence 367666664 5678889999986632 3566666531111588888765432233334455555553
No 28
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=29.04 E-value=1e+02 Score=23.91 Aligned_cols=56 Identities=13% Similarity=0.049 Sum_probs=34.9
Q ss_pred cEEEEEcCc---------hhHHHHHHcCCC----eechHHHHHHHHhCCcccccEEEEcCcchhHHHhhhhccC
Q 022012 235 VRVAFFAEG---------ADAEEARAAGAD----IVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILN 295 (304)
Q Consensus 235 ~KIlVFadg---------d~aeeAkeAGAd----~VGgeELIeKIkk~gkLdFD~~IATpdmMpkL~kLGriLG 295 (304)
.||+++|.. ...+.|++.|.+ .++..++-+.+. +||++|.+|.+--.+..+.....
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~~~-----~~Dvil~~pqv~~~~~~~~~~~~ 72 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQ-----NADVVLLGPQIAYMLPEIQRLLP 72 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSSTTHHHH-----HCSEEEECTTSGGGHHHHHHHSS
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhcc-----CCCEEEEccchhhhHHHHHHHhc
Confidence 579999874 123446667765 233333322222 69999999998877766655443
No 29
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=28.92 E-value=93 Score=28.13 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=36.9
Q ss_pred EEEEEc-CchhHHHHHHcCCCeech-----HHHHHHHHh-CCcccccEEEEcCcchhHHHhhhhccCCC
Q 022012 236 RVAFFA-EGADAEEARAAGADIVGG-----LELIEEIAS-SGKLDVEKCFSTRQFMPRLFKISKILNQH 297 (304)
Q Consensus 236 KIlVFa-dgd~aeeAkeAGAd~VGg-----eELIeKIkk-~gkLdFD~~IATpdmMpkL~kLGriLGPR 297 (304)
+|.+++ +.+..+.|++.||+++-. +++.+.|.+ .+. .+|++|-+...-..+...-+.|.+.
T Consensus 222 ~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~-g~Dvvid~~G~~~~~~~~~~~l~~~ 289 (376)
T 1e3i_A 222 RIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAG-GVDYSLDCAGTAQTLKAAVDCTVLG 289 (376)
T ss_dssp EEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTS-CBSEEEESSCCHHHHHHHHHTBCTT
T ss_pred eEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCC-CccEEEECCCCHHHHHHHHHHhhcC
Confidence 566664 456778899999986532 235555543 112 6999997765434444444556555
No 30
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=27.96 E-value=40 Score=30.50 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=29.0
Q ss_pred EEEEEc-CchhHHHHHHcCCCeech---HHHHHHHHh-CCcccccEEEEcCcc
Q 022012 236 RVAFFA-EGADAEEARAAGADIVGG---LELIEEIAS-SGKLDVEKCFSTRQF 283 (304)
Q Consensus 236 KIlVFa-dgd~aeeAkeAGAd~VGg---eELIeKIkk-~gkLdFD~~IATpdm 283 (304)
+|.+++ +.+..+.|++.||+++-. +++.++|.+ .+. .||++|-+...
T Consensus 217 ~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~g-g~D~vid~~g~ 268 (371)
T 1f8f_A 217 IIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDG-GVNFALESTGS 268 (371)
T ss_dssp EEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTS-CEEEEEECSCC
T ss_pred eEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCC-CCcEEEECCCC
Confidence 455554 446677888899986532 345555543 122 68999877643
No 31
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=27.85 E-value=21 Score=35.13 Aligned_cols=26 Identities=35% Similarity=0.296 Sum_probs=23.7
Q ss_pred CcEEEEEcCchhHHHHHHcCCCeech
Q 022012 234 AVRVAFFAEGADAEEARAAGADIVGG 259 (304)
Q Consensus 234 ~~KIlVFadgd~aeeAkeAGAd~VGg 259 (304)
..|||=+...+++..|.++|||++|-
T Consensus 256 ~~KICGit~~eda~~a~~~Gad~iGf 281 (452)
T 1pii_A 256 ENKVCGLTRGQDAKAAYDAGAIYGGL 281 (452)
T ss_dssp SCEECCCCSHHHHHHHHHHTCSEEEE
T ss_pred hccccCCCcHHHHHHHHhcCCCEEEe
Confidence 57999999999999999999999874
No 32
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Probab=26.99 E-value=1.2e+02 Score=27.39 Aligned_cols=62 Identities=15% Similarity=-0.092 Sum_probs=37.6
Q ss_pred EEEEEcCchhHHHHHHcCCCeec---hHHHHHHHHhCCcccccEEEEcCcch-hHHHhhhhccCCCCC
Q 022012 236 RVAFFAEGADAEEARAAGADIVG---GLELIEEIASSGKLDVEKCFSTRQFM-PRLFKISKILNQHGL 299 (304)
Q Consensus 236 KIlVFadgd~aeeAkeAGAd~VG---geELIeKIkk~gkLdFD~~IATpdmM-pkL~kLGriLGPRGL 299 (304)
+|.+.+..+..+.|++.||+++- .+++.+++.+ . -.+|++|-+..-- ..+...-+.|.+.|.
T Consensus 210 ~Vi~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~-~-~g~D~vid~~g~~~~~~~~~~~~l~~~G~ 275 (375)
T 2vn8_A 210 HVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKS-L-KPFDFILDNVGGSTETWAPDFLKKWSGAT 275 (375)
T ss_dssp EEEEEECGGGHHHHHHTTCSEEEETTSSCHHHHHHT-S-CCBSEEEESSCTTHHHHGGGGBCSSSCCE
T ss_pred EEEEEeChHHHHHHHHcCCCEEEECCchHHHHHHhh-c-CCCCEEEECCCChhhhhHHHHHhhcCCcE
Confidence 56666666677788889998653 2356666753 2 2589888765543 222333455666653
No 33
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=26.94 E-value=1.4e+02 Score=26.86 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=35.9
Q ss_pred EEEEEc-CchhHHHHHHcCCCeech-----HHHHHHHHh-CCcccccEEEEcCcchhHHHhhhhccCCC
Q 022012 236 RVAFFA-EGADAEEARAAGADIVGG-----LELIEEIAS-SGKLDVEKCFSTRQFMPRLFKISKILNQH 297 (304)
Q Consensus 236 KIlVFa-dgd~aeeAkeAGAd~VGg-----eELIeKIkk-~gkLdFD~~IATpdmMpkL~kLGriLGPR 297 (304)
+|.+++ +.+..+.|++.||+++-. +++.+.|.. .+. .+|++|-+...-..+...-+.|.+.
T Consensus 218 ~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~-g~D~vid~~g~~~~~~~~~~~l~~~ 285 (374)
T 2jhf_A 218 RIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEA 285 (374)
T ss_dssp EEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHHBCTT
T ss_pred eEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCC-CCcEEEECCCCHHHHHHHHHHhhcC
Confidence 566665 456778899999986532 235555543 122 6899997765433333333445544
No 34
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=26.81 E-value=1.5e+02 Score=26.71 Aligned_cols=60 Identities=12% Similarity=0.057 Sum_probs=36.6
Q ss_pred EEEEEc-CchhHHHHHHcCCCeech-----HHHHHHHHh--CCcccccEEEEcCcchhHHHhhhhccCCC
Q 022012 236 RVAFFA-EGADAEEARAAGADIVGG-----LELIEEIAS--SGKLDVEKCFSTRQFMPRLFKISKILNQH 297 (304)
Q Consensus 236 KIlVFa-dgd~aeeAkeAGAd~VGg-----eELIeKIkk--~gkLdFD~~IATpdmMpkL~kLGriLGPR 297 (304)
+|.+++ +.+..+.|++.||+++-. +++.+.+.. .+ .+|++|-+...-..+...-+.|.+.
T Consensus 219 ~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~--g~D~vid~~g~~~~~~~~~~~l~~~ 286 (374)
T 1cdo_A 219 RIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNG--GVDFSLECVGNVGVMRNALESCLKG 286 (374)
T ss_dssp EEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTS--CBSEEEECSCCHHHHHHHHHTBCTT
T ss_pred EEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCC--CCCEEEECCCCHHHHHHHHHHhhcC
Confidence 566665 456778899999986531 235555542 22 6899997765433444444556555
No 35
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=26.43 E-value=60 Score=25.00 Aligned_cols=51 Identities=8% Similarity=0.064 Sum_probs=30.8
Q ss_pred CcEEEEEcCc---------hhHHHHHHcCCC----eechHHHHHHHHhCCcccccEEEEcCcchhHHHh
Q 022012 234 AVRVAFFAEG---------ADAEEARAAGAD----IVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFK 289 (304)
Q Consensus 234 ~~KIlVFadg---------d~aeeAkeAGAd----~VGgeELIeKIkk~gkLdFD~~IATpdmMpkL~k 289 (304)
..||+++|.. ...+.+.+.|.+ .++..++ +... -++|++|.|+++--.+.+
T Consensus 4 ~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~-~~~~----~~~D~Ii~t~~l~~~~~~ 67 (109)
T 2l2q_A 4 SMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRL-SEVV----DRFDVVLLAPQSRFNKKR 67 (109)
T ss_dssp CEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTH-HHHT----TTCSEEEECSCCSSHHHH
T ss_pred ceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHH-Hhhc----CCCCEEEECCccHHHHHH
Confidence 4679999874 122445666754 3454454 2221 169999999998754433
No 36
>4b8y_A FHUD2; transport protein-siderophore complex, transport protein, VA siderophore, class III solute binding, inhibitor protein (S; HET: AHO; 1.90A {Staphylococcus aureus subsp}
Probab=26.35 E-value=63 Score=27.75 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=19.0
Q ss_pred EEcCCCCCCCcEEEEEcCchhHHHHHHcCCCeechH
Q 022012 225 MNLPHGDKKAVRVAFFAEGADAEEARAAGADIVGGL 260 (304)
Q Consensus 225 V~LPh~~gK~~KIlVFadgd~aeeAkeAGAd~VGge 260 (304)
|.+|... .||.++... ..+.....|+.+||..
T Consensus 16 v~i~~~p---~RIv~l~~~-~~e~l~aLG~~~Vgv~ 47 (277)
T 4b8y_A 16 VDIPKDP---KRIAVVAPT-YAGGLKKLGANIVAVN 47 (277)
T ss_dssp EEEESSC---SSEEECSGG-GHHHHHHTTCCEEEEE
T ss_pred EEccCCC---cEEEEeChh-hHHHHHHcCCcEEEee
Confidence 6777554 366666543 3455566677777644
No 37
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1
Probab=25.81 E-value=63 Score=29.51 Aligned_cols=47 Identities=17% Similarity=0.077 Sum_probs=30.1
Q ss_pred EEEEEc-CchhHHHHHHcCCCeec------hHHHHHHHHh-CCcccccEEEEcCc
Q 022012 236 RVAFFA-EGADAEEARAAGADIVG------GLELIEEIAS-SGKLDVEKCFSTRQ 282 (304)
Q Consensus 236 KIlVFa-dgd~aeeAkeAGAd~VG------geELIeKIkk-~gkLdFD~~IATpd 282 (304)
+|.+.+ +.+..+.|++.||+++- .+++.++|.+ .+.-.+|++|-+..
T Consensus 222 ~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid~~g 276 (380)
T 1vj0_A 222 NVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATG 276 (380)
T ss_dssp EEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEECSS
T ss_pred eEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEEECCC
Confidence 676666 44667889999998653 3456666653 11125888886653
No 38
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=25.57 E-value=86 Score=25.09 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=38.6
Q ss_pred cEEEEEcCchhHHHHHHcCCCe--e--ch----HHHHHHHHh-CCcccccEEEEcCcchhHHH
Q 022012 235 VRVAFFAEGADAEEARAAGADI--V--GG----LELIEEIAS-SGKLDVEKCFSTRQFMPRLF 288 (304)
Q Consensus 235 ~KIlVFadgd~aeeAkeAGAd~--V--Gg----eELIeKIkk-~gkLdFD~~IATpdmMpkL~ 288 (304)
.||+|++|.+.+.--+-+|+.. | .. +++.+.|++ -..=+|-++|-|.++...+.
T Consensus 1 MKIaVIGD~Dtv~GFrLaGi~~~~v~~~~~t~~ee~~~~~~~l~~~~digIIlIte~ia~~i~ 63 (111)
T 2qai_A 1 MKIVVMGDSDTVVGFRLAGVHEAYEYDESLESVERARNKLRELLERDDVGIILITERLAQRIG 63 (111)
T ss_dssp CEEEEEECHHHHHHHHHHTCSEEEECCSSHHHHHHHHHHHHHHHTCTTEEEEEEEHHHHHHHC
T ss_pred CEEEEEECHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHhhCCCeEEEEEcHHHHhhcc
Confidence 4899999988888788889873 3 44 566555543 11126889999998888776
No 39
>4h59_A PIAA, iron-compound ABC transporter, iron compound-BIND protein; center for structural genomics of infectious diseases; HET: MSE B3P; 1.66A {Streptococcus pneumoniae}
Probab=25.10 E-value=63 Score=27.51 Aligned_cols=33 Identities=36% Similarity=0.286 Sum_probs=22.4
Q ss_pred eeEEEcCCCCCCCcEEEEEcCchhHHHHHHcCCCeec
Q 022012 222 RGTMNLPHGDKKAVRVAFFAEGADAEEARAAGADIVG 258 (304)
Q Consensus 222 rGsV~LPh~~gK~~KIlVFadgd~aeeAkeAGAd~VG 258 (304)
-|+|+||..+ .||.++..+ ..+.+.+.|+..||
T Consensus 13 ~G~vti~~~P---~RIV~l~~~-~~e~l~aLG~~pVg 45 (308)
T 4h59_A 13 FGQTILDKKP---ERVATIAWG-NHDVALALGIVPVG 45 (308)
T ss_dssp TEEEEESSCC---SSEEECSSS-HHHHHHHTTCCCSB
T ss_pred CEEEEeCCCC---CEEEEeCcc-HHHHHHHCCCceEE
Confidence 4788999776 368777654 34666777876555
No 40
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=25.05 E-value=1.3e+02 Score=26.10 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=20.3
Q ss_pred cccEEEEcC--------cchhHHHhhhhccCCCCCC
Q 022012 273 DVEKCFSTR--------QFMPRLFKISKILNQHGLM 300 (304)
Q Consensus 273 dFD~~IATp--------dmMpkL~kLGriLGPRGLM 300 (304)
.||.+++.. +...-|..+.++|.|.|.+
T Consensus 155 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 190 (318)
T 2fk8_A 155 PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRM 190 (318)
T ss_dssp CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEE
T ss_pred CcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEE
Confidence 499999883 3334455589999999864
No 41
>3tlk_A Ferrienterobactin-binding periplasmic protein; ferric-enterobactin, trimer, siderophore transport, periplas space, metal transport; HET: EB4; 1.85A {Escherichia coli}
Probab=24.38 E-value=74 Score=28.16 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=19.0
Q ss_pred eeEEEcCCCCCCCcEEEEEcCchhHHHHHHcCCCeec
Q 022012 222 RGTMNLPHGDKKAVRVAFFAEGADAEEARAAGADIVG 258 (304)
Q Consensus 222 rGsV~LPh~~gK~~KIlVFadgd~aeeAkeAGAd~VG 258 (304)
.|.|.+|... .||.++.. ...+...+.|+..||
T Consensus 37 ~G~vti~~~p---~RIV~l~~-~~~e~l~aLG~~~vg 69 (326)
T 3tlk_A 37 RGTHTLESQP---QRIVSTSV-TLTGSLLAIDAPVIA 69 (326)
T ss_dssp TEEEEECSCC---SSEEESCH-HHHHHHHHTTCCEEE
T ss_pred CccEEeCCCC---cEEEEECc-chHHHHHhCCCCeeE
Confidence 4567888665 35665543 234555666666555
No 42
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=23.91 E-value=63 Score=28.61 Aligned_cols=46 Identities=22% Similarity=0.319 Sum_probs=28.1
Q ss_pred cEEEEEcCc-hhHHHHHHcCCCeec---hHHHHHHHHh-CCcccccEEEEc
Q 022012 235 VRVAFFAEG-ADAEEARAAGADIVG---GLELIEEIAS-SGKLDVEKCFST 280 (304)
Q Consensus 235 ~KIlVFadg-d~aeeAkeAGAd~VG---geELIeKIkk-~gkLdFD~~IAT 280 (304)
.+|.+.+.. +..+.|++.||+++- .++..++|.+ .+...+|.+|-.
T Consensus 189 ~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~~ 239 (348)
T 4eez_A 189 AKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVC 239 (348)
T ss_dssp CEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEEEC
T ss_pred CEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEEEe
Confidence 356666544 567889999999763 3456666654 223355555544
No 43
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=23.83 E-value=48 Score=29.57 Aligned_cols=48 Identities=23% Similarity=0.231 Sum_probs=30.1
Q ss_pred EEEEE-cCchhHHHHHHcCCCeec--hHHHHHHHHh-CCcccccEEEEcCcc
Q 022012 236 RVAFF-AEGADAEEARAAGADIVG--GLELIEEIAS-SGKLDVEKCFSTRQF 283 (304)
Q Consensus 236 KIlVF-adgd~aeeAkeAGAd~VG--geELIeKIkk-~gkLdFD~~IATpdm 283 (304)
+|.++ .+.+..+.|++.||+.+- .+++.++|.+ .+.-.+|++|-+..-
T Consensus 198 ~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~ 249 (345)
T 3jv7_A 198 RVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGA 249 (345)
T ss_dssp EEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSCC
T ss_pred EEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCCC
Confidence 56666 455778889999999764 2345566553 111258888865543
No 44
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=22.54 E-value=1.1e+02 Score=28.24 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=30.4
Q ss_pred EEEEEc-CchhHHHHHHcCCCeec---hHHHHHHHHh-CCcccccEEEEcCcc
Q 022012 236 RVAFFA-EGADAEEARAAGADIVG---GLELIEEIAS-SGKLDVEKCFSTRQF 283 (304)
Q Consensus 236 KIlVFa-dgd~aeeAkeAGAd~VG---geELIeKIkk-~gkLdFD~~IATpdm 283 (304)
+|.+++ ..+..+.|++.||+++- .+++.++|.+ .+.-.+|++|-+..-
T Consensus 240 ~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~ 292 (404)
T 3ip1_A 240 KVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGV 292 (404)
T ss_dssp EEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSC
T ss_pred EEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCC
Confidence 566665 44667888999998763 2456666654 122258999866443
No 45
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=22.34 E-value=52 Score=29.53 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=29.6
Q ss_pred EEEEEcCc-hhHHHHHHcCCCeec---hHHHHHHHHh-CCcccccEEEEcCc
Q 022012 236 RVAFFAEG-ADAEEARAAGADIVG---GLELIEEIAS-SGKLDVEKCFSTRQ 282 (304)
Q Consensus 236 KIlVFadg-d~aeeAkeAGAd~VG---geELIeKIkk-~gkLdFD~~IATpd 282 (304)
+|.+++.. +..+.|++.||+++- .+++.++|.+ .+.-.||++|-+..
T Consensus 193 ~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g 244 (352)
T 3fpc_A 193 RIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGG 244 (352)
T ss_dssp SEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSS
T ss_pred EEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCC
Confidence 56666654 457889999998764 2456666653 12225888886543
No 46
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}
Probab=22.20 E-value=48 Score=29.72 Aligned_cols=47 Identities=30% Similarity=0.286 Sum_probs=28.4
Q ss_pred EEEEEcC-chhHHHHHHcCCCeec--hHHHHHHHHhCCcccccEEEEcCc
Q 022012 236 RVAFFAE-GADAEEARAAGADIVG--GLELIEEIASSGKLDVEKCFSTRQ 282 (304)
Q Consensus 236 KIlVFad-gd~aeeAkeAGAd~VG--geELIeKIkk~gkLdFD~~IATpd 282 (304)
+|.+.+. .+..+.|++.||+++- .+++.+.+.+.+.-.||++|-+..
T Consensus 177 ~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g 226 (346)
T 3fbg_A 177 RVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFN 226 (346)
T ss_dssp EEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSC
T ss_pred EEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCC
Confidence 5666665 4667788888988653 234555554311125888886544
No 47
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=21.81 E-value=58 Score=25.34 Aligned_cols=55 Identities=13% Similarity=0.027 Sum_probs=38.9
Q ss_pred cEEEEEcCchhHHHHHHcCCC-e--e-chHHHHHHHHh-CCcccccEEEEcCcchhHHHh
Q 022012 235 VRVAFFAEGADAEEARAAGAD-I--V-GGLELIEEIAS-SGKLDVEKCFSTRQFMPRLFK 289 (304)
Q Consensus 235 ~KIlVFadgd~aeeAkeAGAd-~--V-GgeELIeKIkk-~gkLdFD~~IATpdmMpkL~k 289 (304)
.||+|+++.+.+.--+-+|+. . | ..+|+.+.|.+ -..=+|-++|-|.++...+..
T Consensus 1 MkiaVIGD~dtv~GFrLaGi~~v~~v~~~ee~~~~~~~l~~~~digIIlite~~a~~i~~ 60 (101)
T 2ov6_A 1 MELAVIGKSEFVTGFRLAGISKVYETPDIPATESAVRSVLEDKSVGILVMHNDDIGNLPE 60 (101)
T ss_dssp CCEEEEECHHHHHHHHHHTCCEEEECCSTTTHHHHHHHHHHHTSSSEEEEEHHHHTTCTT
T ss_pred CEEEEEECHHHHHHHHHcCCCceEecCCHHHHHHHHHHHhhCCCeEEEEEcHHHHHHhHH
Confidence 379999998888888889998 3 3 44455444542 001178999999998887765
No 48
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=21.67 E-value=30 Score=27.83 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=39.6
Q ss_pred cEEEEEcCchhHHHHHHcCCCe--e-chHHHHHHHHh-CCcccccEEEEcCcchhHHHh-hhh
Q 022012 235 VRVAFFAEGADAEEARAAGADI--V-GGLELIEEIAS-SGKLDVEKCFSTRQFMPRLFK-ISK 292 (304)
Q Consensus 235 ~KIlVFadgd~aeeAkeAGAd~--V-GgeELIeKIkk-~gkLdFD~~IATpdmMpkL~k-LGr 292 (304)
.||+|++|.+.+.--+-+|++. | ..+|+.+.|++ ... +|-++|-|.++...+.. |.+
T Consensus 3 mKiaVIGD~Dtv~GFrLaGie~~~v~~~ee~~~~~~~l~~~-digIIlIte~ia~~i~~~i~~ 64 (115)
T 3aon_B 3 YKIGVVGDKDSVSPFRLFGFDVQHGTTKTEIRKTIDEMAKN-EYGVIYITEQCANLVPETIER 64 (115)
T ss_dssp EEEEEESCHHHHGGGGGGTCEEECCCSHHHHHHHHHHHHHT-TEEEEEEEHHHHTTCHHHHHH
T ss_pred eEEEEEECHHHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhc-CceEEEEeHHHHHHhHHHHHH
Confidence 4899999987777677788863 2 33444444443 123 89999999999888876 555
No 49
>3r5t_A Ferric vibriobactin ABC transporter, periplasmic vibriobactin-binding protein; iron-vibriobactin transport protein; HET: VBN; 1.45A {Vibrio cholerae} PDB: 3r5s_A*
Probab=21.14 E-value=73 Score=27.92 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=18.9
Q ss_pred EEEcCCCCCCCcEEEEEcCchhHHHHHHcCCCeechH
Q 022012 224 TMNLPHGDKKAVRVAFFAEGADAEEARAAGADIVGGL 260 (304)
Q Consensus 224 sV~LPh~~gK~~KIlVFadgd~aeeAkeAGAd~VGge 260 (304)
.|.+|... .||.++.. ...+...+.|+.+||..
T Consensus 16 ~v~i~~~p---~RIV~l~~-~~~e~l~aLG~~~Vg~~ 48 (305)
T 3r5t_A 16 ITTIPSQP---KRILSTAV-TVTGTLLAIDAPVIASA 48 (305)
T ss_dssp EEEECSCC---SSEEESCH-HHHHHHHHTTCCEEEEE
T ss_pred EEEecCCC---eEEEEECc-chhHHHHHcCCceEEEe
Confidence 67777554 35665542 33455566677666643
Done!