RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 022012
(304 letters)
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein,
nucleotide-binding, protein biosynthesis, translation,
zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB:
3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C*
3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Length = 234
Score = 145 bits (369), Expect = 8e-43
Identities = 50/131 (38%), Positives = 81/131 (61%), Gaps = 1/131 (0%)
Query: 174 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKK 233
+K ++ D+ +AI +K A A F E+V+ V L I RK++ VRG LPHG +
Sbjct: 12 REKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGR 71
Query: 234 AVRVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKI 293
+VRVA F +GA+AE A+AAGA++VG +L ++I G+++ + ++ M + ++ ++
Sbjct: 72 SVRVAVFTQGANAEAAKAAGAELVGMEDLADQI-KKGEMNFDVVIASPDAMRVVGQLGQV 130
Query: 294 LNQHGLMPNPK 304
L GLMPNPK
Sbjct: 131 LGPRGLMPNPK 141
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 352
Score = 148 bits (375), Expect = 2e-42
Identities = 67/216 (31%), Positives = 103/216 (47%), Gaps = 16/216 (7%)
Query: 97 TREDIRYLKD-VPTITPVSYPSRVAPLPEAGE-PASGEAEGEGDGERRRIQSEKKTLRFM 154
R ++++ +P S RV A A E E G + S K
Sbjct: 48 ERSCLKWVDFTSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTK----- 102
Query: 155 RVPEQAQVSVPYPLLIKPESKKKESRPVLD------LMDAIKQVKANAKATFDETVEAHV 208
P++ + ++P + E + + + L A+ +K + F ET EAH
Sbjct: 103 --PKKGKAALPLKSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHF 160
Query: 209 RLAIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGADIVGGLELIEEIAS 268
RL I P+ + +R T++LP G K V++A A+G +EA+AAGADIVGG ELIE+I
Sbjct: 161 RLNIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQI-K 219
Query: 269 SGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPK 304
G +D +K +T M ++ + +IL GLMP PK
Sbjct: 220 GGFMDFDKLIATSDMMAKVASLGRILGPRGLMPTPK 255
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent
of ribosome, rRNA BI regulation of translation,
translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Length = 242
Score = 143 bits (363), Expect = 1e-41
Identities = 54/134 (40%), Positives = 78/134 (58%), Gaps = 3/134 (2%)
Query: 174 SKKKESRPVLDLMDAIKQVKANAKAT---FDETVEAHVRLAIPPRKTELIVRGTMNLPHG 230
SK + L +A+ +K + FDETVE +RL + PR + +VRG++ LPHG
Sbjct: 12 SKLVDRNKRYTLEEAVDLLKKMEEVLQRRFDETVELAMRLNVDPRYADQMVRGSVVLPHG 71
Query: 231 DKKAVRVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKI 290
K ++V FAEG A++A AGAD VGG ELI +I D + +T + MP++ K+
Sbjct: 72 LGKPIKVVVFAEGEYAKKAEEAGADYVGGDELINKILKEEWTDFDVAIATPEMMPKVAKL 131
Query: 291 SKILNQHGLMPNPK 304
+IL GLMP+PK
Sbjct: 132 GRILGPRGLMPSPK 145
>4f9t_A 50S ribosomal protein L1; rossman fold, RNA; HET: MPD; 1.46A
{Thermus thermophilus} PDB: 3u4m_A 1eg0_N 1vsp_A 2hgj_C
2hgq_C 2hgu_C 1vsa_A 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C
1giy_C 2hw8_A 2j01_C 2j03_C 2jl6_C 2jl8_C 2om7_K* 2v47_C
...
Length = 229
Score = 142 bits (361), Expect = 1e-41
Identities = 56/132 (42%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
Query: 174 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKK 233
+K + + + +A VK A A FDETVE H +L I PR+++ VRGT++LPHG K
Sbjct: 12 LEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGK 71
Query: 234 AVRVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQFMPRL-FKISK 292
VRV A+G +EA AGAD VGG E+I++I G +D + +T M + K+ +
Sbjct: 72 QVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKI-LDGWMDFDAVVATPDVMGAVGSKLGR 130
Query: 293 ILNQHGLMPNPK 304
IL GL+PNPK
Sbjct: 131 ILGPRGLLPNPK 142
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A
{Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5
1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Length = 217
Score = 124 bits (313), Expect = 1e-34
Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 10/132 (7%)
Query: 182 VLDLMDAIKQVKANAKATFDETVEAHVRLA-IPPRKTELIVRGTMNLPHGDKKAVRVAFF 240
+++ + + N K F ++VE + I +K +L +R + LP KA RV
Sbjct: 8 LIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRVLVV 67
Query: 241 AEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQF-------MPRLFKI-SK 292
E A+ A +V E ++++ K V+K ++ M +I
Sbjct: 68 PSSEQLEYAKKASPKVVITREELQKL-QGQKRPVKKLARQNEWFLINQESMALAGRILGP 126
Query: 293 ILNQHGLMPNPK 304
L G P P
Sbjct: 127 ALGPRGKFPTPL 138
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein,
translation repressor, ribosome; 1.85A
{Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB:
1cjs_A 1u63_A 1dwu_A
Length = 219
Score = 119 bits (300), Expect = 1e-32
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 184 DLMDAIKQVKANAKAT-FDETVEAHVRL-AIPPRKTELIVRGTMNLPHGDKKAVRVAFFA 241
L+ A+K+ + AK F ++ E L I RK E ++ + LPHG K ++A
Sbjct: 5 ALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIG 64
Query: 242 EGADAEEARAAGADIVGGLELIEEIAS-----SGKLDVEKCFSTRQFMPRLFK-ISKILN 295
G A++A G ++ E+ E + + + MP + + + IL
Sbjct: 65 TGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILG 124
Query: 296 QHGLMPNPK 304
G MP P
Sbjct: 125 PRGKMPKPV 133
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_A
Length = 216
Score = 115 bits (289), Expect = 3e-31
Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 5/133 (3%)
Query: 175 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKA 234
K +S V D + I K F ETVE + L + + G++ LPH +
Sbjct: 2 SKLQSDAVKDAITQIVGEAREKKRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 235 VRVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQFMPR---LFKIS 291
+RV + ++A G D + L + + KL + F+ + +I
Sbjct: 62 MRVCMLGDAQHVDQAEKMGLDYMDVESLKKMN-KNKKLVKKLAKKYHAFLASEAIIKQIP 120
Query: 292 KILNQHGLMPNPK 304
++L GL K
Sbjct: 121 RLLGP-GLNKAGK 132
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 212
Score = 113 bits (285), Expect = 1e-30
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 8/129 (6%)
Query: 184 DLMDAIKQ-VKANAKATFDETVEAHVRLA-IPPRKTELIVRGTMNLPHGDKKAVRVAFFA 241
++ +A+ + ++ + F ETV+ V L + V ++ LP G + + FA
Sbjct: 5 EIENAVSRALEDAPERNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQETTIVVFA 64
Query: 242 EGADAEEARAAGADIVGGLELIE-----EIASSGKLDVEKCFSTRQFMPRLFK-ISKILN 295
EG A A D++ EL E + A D + + + M + + + +L
Sbjct: 65 EGETALRAEEVADDVLDEDELEELGGDDDAAKDLADDTDFFIAEKGLMQDIGRYLGTVLG 124
Query: 296 QHGLMPNPK 304
G MP P
Sbjct: 125 PRGKMPEPL 133
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins,
ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A
3izs_A 1s1i_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B
3jyw_A
Length = 217
Score = 112 bits (283), Expect = 2e-30
Identities = 25/137 (18%), Positives = 55/137 (40%), Gaps = 6/137 (4%)
Query: 174 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKK 233
SK S+ + + +K K F ETVE V L + + G++ LP+ +
Sbjct: 2 SKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRP 61
Query: 234 AVRVAFFAEGADAEEARAAGADIVGGLELIE-----EIASSGKLDVEKCFSTRQFMPRLF 288
+ + F + D + A++ G D + +L + ++ ++ + ++
Sbjct: 62 NMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVP 121
Query: 289 KI-SKILNQHGLMPNPK 304
++ L++ G P P
Sbjct: 122 RLLGPQLSKAGKFPTPV 138
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large
ribosomal subunit, ribosomal R ribosome; 12.10A {Bos
taurus}
Length = 189
Score = 105 bits (263), Expect = 1e-27
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 204 VEAHVRLAIPPRKTELIVRGTMNLPHGDKKAV-RVAFFAEGAD-AEEARAAGADIVGGLE 261
++ + +A+ +K ++LP+ + +VA F E A + A GA GG
Sbjct: 1 LDLTLDMALGKKKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTS 60
Query: 262 LIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPK 304
LI++I ++ + + + MP L ++ K LN+ P
Sbjct: 61 LIQKI-WDDEIVADFYVAVPEIMPELNRLRKKLNKK--YPKLS 100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 5e-05
Identities = 55/296 (18%), Positives = 102/296 (34%), Gaps = 83/296 (28%)
Query: 3 AVRLLLSQ-ARRHCLTKPHASPSVTFQRTLCSSTAVQDDDESQNPPKQPIPVVSYASKPK 61
A+ +L R + + T + ++D E+ P P++S
Sbjct: 299 AITVLFFIGVRCYE----------AYPNTSLPPSILEDSLENNE--GVPSPMLSI----S 342
Query: 62 DESNAPIENAQQQQNELQSDNPPHDFQAEEARTGLTREDIRYLKDVPTITPVSYPSRVAP 121
+ + +++ + N + P Q E + L + + V
Sbjct: 343 NLTQEQVQDYVNKTNS----HLPAGKQVEIS-----------LVNGAK-------NLVV- 379
Query: 122 LPEAGEPAS--G------EAEGEGDGERRRIQ-SEKK---TLRFMRVPEQAQVSVPY--P 167
+G P S G +A+ ++ RI SE+K + RF +P V+ P+
Sbjct: 380 ---SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF--LP----VASPFHSH 430
Query: 168 LLIKPESKKKESRPVLDLMDAIKQVKANAKA-------TFDETVEAHVRLAIPPRKTELI 220
LL+ + DL+ V NAK TFD + + +I R + I
Sbjct: 431 LLVPASDLINK-----DLVK--NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 221 VRGTMNLPHGDK-KAVRVAFFAEGADAEEARAAGADIVG-GLELIEEIASSGKLDV 274
+R + + KA + F G + + G G+ +I +G LD+
Sbjct: 484 IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVI----VAGTLDI 535
Score = 31.6 bits (71), Expect = 0.45
Identities = 15/130 (11%), Positives = 36/130 (27%), Gaps = 41/130 (31%)
Query: 182 VLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVAFFA 241
V+ + ++ V +++A+P R + + A+ A
Sbjct: 1776 VMSIESLVEVVFYRGMT---------MQVAVP--------RDELGRSNYGMIAINPGRVA 1818
Query: 242 EGADAEEARAAGADIVGGLELIEEIA----------SSGKL-DVEKCFSTRQFMPRLFKI 290
E + + + EI ++G L ++ +
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALD-------------TV 1865
Query: 291 SKILNQHGLM 300
+ +LN L
Sbjct: 1866 TNVLNFIKLQ 1875
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A
2vpl_A
Length = 137
Score = 38.8 bits (91), Expect = 4e-04
Identities = 5/38 (13%), Positives = 15/38 (39%)
Query: 267 ASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPK 304
A K+D K ++ + + +++ + + K
Sbjct: 9 ALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAK 46
>2fe0_A SMP-1, small myristoylated protein 1; beta sheet, protein
transport, membrane protein; NMR {Leishmania major}
SCOP: b.134.1.1
Length = 136
Score = 29.9 bits (67), Expect = 0.54
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 195 NAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAV 235
K E E + + P +TE+ + G +N A+
Sbjct: 81 KTKLEQQENGEWVASVVVYPCETEMFIEGRVNGFKSKMDAL 121
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium smegmatis} PDB:
3njb_A
Length = 333
Score = 29.4 bits (66), Expect = 1.6
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 13/62 (20%)
Query: 194 ANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPH--GDKKAVRVAFFAEGADAEEARA 251
A A A +R+ P H GD++A R+ F + +A
Sbjct: 184 AAADAKI---GYPPMRVWGVP--------AAGLWAHRLGDQRAKRLLFTGDCITGAQAAE 232
Query: 252 AG 253
G
Sbjct: 233 WG 234
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP
complex, amino-acid biosynthesis; HET: NAP; 2.20A
{Candida albicans}
Length = 381
Score = 29.2 bits (66), Expect = 1.7
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 7/61 (11%)
Query: 199 TFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGAD-----AEEARAAG 253
+ + +P + +++V+ P G+ V F AD + AG
Sbjct: 60 KYKDAASWKQTETLPETEQDIVVQECK--PEGNFLECDVVFSGLDADVAGDIEKSFVEAG 117
Query: 254 A 254
Sbjct: 118 L 118
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET:
NAP; 2.29A {Methanocaldococcus jannaschii}
Length = 354
Score = 28.7 bits (65), Expect = 2.3
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 13/85 (15%)
Query: 178 ESRPVLDLMDAIKQVKANAK---ATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKA 234
P+ +L + A+ + + + IP +++V T + H + +
Sbjct: 29 ADHPMFEL----TALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPT-DPKHEEFED 83
Query: 235 VRVAFFAEGAD-----AEEARAAGA 254
V + F A +D E G
Sbjct: 84 VDIVFSALPSDLAKKFEPEFAKEGK 108
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium marinum M}
Length = 233
Score = 28.3 bits (64), Expect = 3.0
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 4/47 (8%)
Query: 223 GTMNLPH--GDKKAVRVAFFAEGADAEEARAAG--ADIVGGLELIEE 265
L + A A+ E A AAG +I ++
Sbjct: 143 AMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEISLPEVVLSR 189
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2,
protein structure initiative, EN hydratase; 1.76A
{Bordetella parapertussis}
Length = 254
Score = 28.3 bits (64), Expect = 3.2
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 18/70 (25%)
Query: 208 VRLAIPPRKTELIVRGTMNLPH--GDKKAVRVAFFAEGADAEEARAAGADIVGGLELIEE 265
++ + GT G +A+ + A DA+EAR G + +
Sbjct: 136 LKFGLVL--------GTRRFRDIVGADQALSILGSARAFDADEARRIG--------FVRD 179
Query: 266 IASSGKLDVE 275
A+ +
Sbjct: 180 CAAQAQWPAL 189
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S*
1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S*
1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S*
1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Length = 85
Score = 26.5 bits (59), Expect = 3.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 224 TMNLPHGDKKA-VRVAFFAEGADAEE 248
T N G+KKA VR +E DA+E
Sbjct: 55 TQNTMDGEKKAVVR---LSEDDDAQE 77
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center
for infectious disease, S coenzyme A, tuberculosis;
2.05A {Mycobacterium avium}
Length = 255
Score = 27.9 bits (63), Expect = 3.4
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 223 GTMNLPH--GDKKAVRVAFFAEGADAEEARAAG 253
+ LP G + R+A AE A A G
Sbjct: 140 ASALLPLLIGRARTSRMAMTAEKISAATAFEWG 172
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions,
DNA HYDR sodium ION, quadruplex DNA, DNA-binding
protein-DNA complex; 1.86A {Sterkiella nova} SCOP:
b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A
1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A
1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Length = 495
Score = 28.0 bits (61), Expect = 4.1
Identities = 10/82 (12%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Query: 142 RRIQSEKKTLRFMRVPEQAQVSVPYPLLIKPESKKKESRPVLDLMDAIKQVKANAKATFD 201
R + ++ + + ++ + KK + P L D ++ +
Sbjct: 310 RAKIQDDHSVEVASLKKNVSLNAVVLTEVD---KKHAALPSTSLQDLFHHADSDKELQAQ 366
Query: 202 ETVEAHVR-LAIPPRKTELIVR 222
+T I P + V+
Sbjct: 367 DTFRTQFYVTKIEPSDVKEWVK 388
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM;
1.80A {Helicobacter pylori}
Length = 259
Score = 27.8 bits (61), Expect = 4.2
Identities = 6/60 (10%), Positives = 22/60 (36%)
Query: 225 MNLPHGDKKAVRVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQFM 284
+ + + + + +R+ F E D ++ + A ++ +E ++ +
Sbjct: 43 IVIGYNNNQTLRIEFNHEVKDPKDYKNATIELCQSVEKTHDLKGVEEEVKAFKEGFDSVC 102
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2;
2.00A {Acinetobacter baumannii}
Length = 266
Score = 27.5 bits (62), Expect = 5.3
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 223 GTMNLPH--GDKKAVRVAFFAEGADAEEARAAG 253
+ L G KA + F A+ +AE A AG
Sbjct: 147 ASQLLVKQAGYHKAAELLFTAKKFNAETALQAG 179
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT,
protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A
{Moloney murine leukemia virus} PDB: 1d1u_A 1n4l_A*
1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A
2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A
1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Length = 255
Score = 27.2 bits (60), Expect = 5.8
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 8/77 (10%)
Query: 158 EQAQVSVPYPL-LIKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRK 216
E +VP P L+ + VLDL DA ++ T + +
Sbjct: 100 EDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLR------LHPTSQPLFAFEWRDPE 153
Query: 217 TELIVRGTMN-LPHGDK 232
+ + T LP G K
Sbjct: 154 MGISGQLTWTRLPQGFK 170
>1ka5_A Phosphocarrier protein HPR; open faced beta-sandwich, structural
proteomics in europe, spine, structural genomics, ligand
transport; NMR {Staphylococcus aureus} SCOP: d.94.1.1
PDB: 1qr5_A 1txe_A
Length = 88
Score = 26.0 bits (58), Expect = 6.2
Identities = 7/41 (17%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 224 TMNLPHGDKKAVRVAFFAEGADAEEARAAGADIVGGLELIE 264
++ + + + +A+G+D +A A +D++ L +
Sbjct: 52 SLGVGKDAE----ITIYADGSDESDAIQAISDVLSKEGLTK 88
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid
metabolism, STR genomics, structural genomics
consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Length = 280
Score = 26.8 bits (60), Expect = 7.8
Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 10/55 (18%)
Query: 223 GTMNLPH--GDKKAVRVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVE 275
+ P KA + F + A EA A G L+ E+ E
Sbjct: 169 SSYTFPKIMSPAKATEMLIFGKKLTAGEACAQG--------LVTEVFPDSTFQKE 215
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics;
1.58A {Legionella pneumophila subsp}
Length = 268
Score = 26.7 bits (60), Expect = 8.0
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 8/46 (17%)
Query: 230 GDKKAVRVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVE 275
G++ A + AE DA A + L++ L
Sbjct: 155 GERAAKMLFMSAEVFDATRAYSLN--------LVQHCVPDDTLLEF 192
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism,
lyase, structural genomics; HET: PGE; 2.30A
{Mycobacterium tuberculosis}
Length = 264
Score = 26.7 bits (60), Expect = 8.8
Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 223 GTMNLPH--GDKKAVRVAFFAEGADAEEARAAG 253
L G +A + AE AE A G
Sbjct: 155 SIRRLSSLVGHGRARAMLLSAEKLTAEIALHTG 187
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.130 0.364
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,538,990
Number of extensions: 276960
Number of successful extensions: 842
Number of sequences better than 10.0: 1
Number of HSP's gapped: 826
Number of HSP's successfully gapped: 67
Length of query: 304
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 211
Effective length of database: 4,105,140
Effective search space: 866184540
Effective search space used: 866184540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.7 bits)