RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 022012
         (304 letters)



>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus
           [TaxId: 274]}
          Length = 224

 Score = 92.0 bits (228), Expect = 8e-23
 Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 2/131 (1%)

Query: 175 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKA 234
           +K +   +  + +A   VK  A A FDETVE H +L I PR+++  VRGT++LPHG  K 
Sbjct: 8   EKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQ 67

Query: 235 VRVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFK-ISKI 293
           VRV   A+G   +EA  AGAD VGG E I +    G +D +   +T   M  +   + +I
Sbjct: 68  VRVLAIAKGEKIKEAEEAGADYVGG-EEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRI 126

Query: 294 LNQHGLMPNPK 304
           L   GL+PNPK
Sbjct: 127 LGPRGLLPNPK 137


>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus
           acidocaldarius [TaxId: 2285]}
          Length = 217

 Score = 74.8 bits (183), Expect = 1e-16
 Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 10/136 (7%)

Query: 177 KESRPVLDLMDAIKQVKANAKATFDETVEAHVRLA-IPPRKTELIVRGTMNLPHGDKKAV 235
           KES  +++ +      + N K  F ++VE  +    I  +K +L +R  + LP    KA 
Sbjct: 5   KES--LIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAK 62

Query: 236 RVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCF-------STRQFMPRLF 288
           RV         E A+ A   +V   E ++++    +   +          +         
Sbjct: 63  RVLVVPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGR 122

Query: 289 KISKILNQHGLMPNPK 304
            +   L   G  P P 
Sbjct: 123 ILGPALGPRGKFPTPL 138


>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus
           jannaschii [TaxId: 2190]}
          Length = 212

 Score = 72.1 bits (176), Expect = 1e-15
 Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 8/128 (6%)

Query: 185 LMDAIKQVKANAKAT-FDETVEAHVRL-AIPPRKTELIVRGTMNLPHGDKKAVRVAFFAE 242
           L+ A+K+ +  AK   F ++ E    L  I  RK E  ++  + LPHG  K  ++A    
Sbjct: 6   LLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGT 65

Query: 243 GADAEEARAAGADIVGGLELIEEIA-----SSGKLDVEKCFSTRQFMPRLFK-ISKILNQ 296
           G  A++A   G  ++   E+ E               +   +    MP + + +  IL  
Sbjct: 66  GDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGP 125

Query: 297 HGLMPNPK 304
            G MP P 
Sbjct: 126 RGKMPKPV 133


>d2fe0a1 b.134.1.1 (A:1-131) Small myristoylated protein 1, Smp-1
           {Leishmania major [TaxId: 5664]}
          Length = 131

 Score = 30.9 bits (70), Expect = 0.078
 Identities = 9/41 (21%), Positives = 16/41 (39%)

Query: 195 NAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAV 235
             K    E  E    + + P +TE+ + G +N       A+
Sbjct: 76  KTKLEQQENGEWVASVVVYPCETEMFIEGRVNGFKSKMDAL 116


>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 81

 Score = 25.4 bits (56), Expect = 3.1
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 19/60 (31%)

Query: 190 KQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKA-VRVAFFAEGADAEE 248
            +V    +  +D TVE               V  T N   G+KKA VR    +E  DA+E
Sbjct: 35  GEVADAVEEQYDVTVEQ--------------VN-TQNTMDGEKKAVVR---LSEDDDAQE 76


>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
           4 {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 312

 Score = 26.1 bits (56), Expect = 5.4
 Identities = 3/34 (8%), Positives = 11/34 (32%), Gaps = 8/34 (23%)

Query: 243 GADAEEARAAGADIVG--------GLELIEEIAS 268
                +   +GA ++            +I++  +
Sbjct: 267 AESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCT 300


>d1r75a_ b.134.1.1 (A:) Unnamed hypothetical protein {Leishmania
           major [TaxId: 5664]}
          Length = 121

 Score = 24.8 bits (54), Expect = 8.3
 Identities = 5/26 (19%), Positives = 14/26 (53%)

Query: 201 DETVEAHVRLAIPPRKTELIVRGTMN 226
           D+  +    + + P +T++ V G++ 
Sbjct: 77  DDFGKYLCEVDVRPLETQMFVEGSVT 102


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.130    0.364 

Gapped
Lambda     K      H
   0.267   0.0657    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,069,662
Number of extensions: 49863
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 11
Length of query: 304
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,240,546
Effective search space: 271679574
Effective search space used: 271679574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.3 bits)