BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022014
         (304 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9NPD5|SO1B3_HUMAN Solute carrier organic anion transporter family member 1B3 OS=Homo
           sapiens GN=SLCO1B3 PE=1 SV=1
          Length = 702

 Score = 34.3 bits (77), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 14/97 (14%)

Query: 191 THYNPSEWSAGSTSSTAKNCYGETAPMSGTTYPGAYPDQMR----------VVDAVIRDM 240
           TH NPSE S  S S+   N   +T   +GT+      D ++           +  ++R +
Sbjct: 127 THINPSENSTSSLSTCLIN---QTLSFNGTSPEIVEKDCVKESGSHMWIYVFMGNMLRGI 183

Query: 241 -HSPAYLLDITMLSELRKDGHPSIYSGDLNPKQKANP 276
             +P   L I+ + +  K+GH S+Y G LN      P
Sbjct: 184 GETPIVPLGISYIDDFAKEGHSSLYLGSLNAIGMIGP 220


>sp|A2BGA0|RFX4_DANRE Transcription factor RFX4 OS=Danio rerio GN=rfx4 PE=2 SV=1
          Length = 735

 Score = 32.7 bits (73), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 117 KSWLNADVLSFNTGHWWSHEGSLQGWDYMESMGTYYQDMDRLVALEKGLRTWANWVDNNI 176
           + W N D+ S      ++ E S +  D    +   YQ+ DRL+  +  +  +  W+D+ +
Sbjct: 348 EDWRNVDLNSITKQTLYTMEDSRE--DQRRLIIQLYQEFDRLLEDQSPIEAYIEWLDSMV 405

Query: 177 DRSKTRV 183
           +R   RV
Sbjct: 406 ERCVVRV 412


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.135    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,088,396
Number of Sequences: 539616
Number of extensions: 5204624
Number of successful extensions: 11305
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11304
Number of HSP's gapped (non-prelim): 2
length of query: 304
length of database: 191,569,459
effective HSP length: 117
effective length of query: 187
effective length of database: 128,434,387
effective search space: 24017230369
effective search space used: 24017230369
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)