Query 022014
Match_columns 304
No_of_seqs 137 out of 741
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 12:42:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022014.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022014hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h08_A Putative hydrolase; GDS 96.6 0.0017 5.7E-08 55.0 4.7 91 121-254 74-164 (200)
2 3hp4_A GDSL-esterase; psychrot 75.7 0.91 3.1E-05 36.9 1.3 78 121-250 66-144 (185)
3 4hf7_A Putative acylhydrolase; 75.3 0.82 2.8E-05 38.6 1.0 30 159-192 101-130 (209)
4 3rjt_A Lipolytic protein G-D-S 68.7 1.7 6E-05 35.7 1.5 26 158-187 112-137 (216)
5 3mil_A Isoamyl acetate-hydroly 62.3 2.2 7.5E-05 35.8 0.9 53 121-191 72-124 (240)
6 1ivn_A Thioesterase I; hydrola 61.4 2.3 7.9E-05 34.7 0.8 46 121-188 62-107 (190)
7 1yzf_A Lipase/acylhydrolase; s 60.1 2.3 7.8E-05 34.3 0.6 89 120-254 66-154 (195)
8 3dc7_A Putative uncharacterize 56.6 28 0.00097 28.9 7.0 25 228-254 161-185 (232)
9 2q0q_A ARYL esterase; SGNH hyd 55.0 3.2 0.00011 34.3 0.7 107 122-262 84-197 (216)
10 2hsj_A Putative platelet activ 53.1 4.5 0.00015 33.4 1.3 52 121-192 85-136 (214)
11 3dc7_A Putative uncharacterize 53.0 4.8 0.00017 33.9 1.5 17 33-49 18-34 (232)
12 3p94_A GDSL-like lipase; serin 51.9 4.2 0.00014 33.2 0.9 92 121-253 74-165 (204)
13 3dci_A Arylesterase; SGNH_hydr 51.9 3.9 0.00013 34.7 0.7 76 158-253 122-200 (232)
14 1vjg_A Putative lipase from th 50.7 3.6 0.00012 34.3 0.3 90 121-254 88-178 (218)
15 1fxw_F Alpha2, platelet-activa 50.6 8 0.00027 32.6 2.5 49 121-191 94-142 (229)
16 3bzw_A Putative lipase; protei 49.5 6.7 0.00023 34.3 1.9 78 160-254 142-221 (274)
17 1es9_A PAF-AH, platelet-activa 46.1 6.7 0.00023 33.1 1.2 49 121-191 93-141 (232)
18 2vpt_A Lipolytic enzyme; ester 42.7 6 0.00021 33.0 0.4 14 36-49 5-18 (215)
19 2waa_A Acetyl esterase, xylan 41.2 8.8 0.0003 35.2 1.3 48 121-187 225-272 (347)
20 2w9x_A AXE2A, CJCE2B, putative 39.5 10 0.00034 35.1 1.4 28 158-187 266-293 (366)
21 3tpf_A Otcase, ornithine carba 38.4 18 0.00062 33.2 3.0 36 24-61 123-169 (307)
22 1fll_X B-cell surface antigen 36.9 19 0.00066 20.7 1.8 11 279-289 6-16 (26)
23 2wao_A Endoglucanase E; plant 36.7 9.8 0.00034 34.6 0.9 28 158-187 233-260 (341)
24 3q98_A Transcarbamylase; rossm 36.6 21 0.00073 34.0 3.2 28 34-61 189-221 (399)
25 3grf_A Ornithine carbamoyltran 35.2 20 0.00068 33.3 2.7 28 33-61 158-185 (328)
26 3r7f_A Aspartate carbamoyltran 35.1 21 0.00073 32.7 2.9 28 34-61 145-172 (304)
27 4amu_A Ornithine carbamoyltran 34.6 22 0.00076 33.5 2.9 26 34-60 178-203 (365)
28 3skv_A SSFX3; jelly roll, GDSL 33.9 16 0.00054 34.5 1.8 29 160-190 265-293 (385)
29 1vcc_A DNA topoisomerase I; DN 32.5 7.1 0.00024 28.3 -0.6 15 37-51 55-70 (77)
30 2o14_A Hypothetical protein YX 32.2 18 0.00062 33.6 1.9 88 123-253 232-319 (375)
31 1k7c_A Rhamnogalacturonan acet 32.1 14 0.00049 31.5 1.1 65 160-253 109-173 (233)
32 2yfk_A Aspartate/ornithine car 31.9 28 0.00096 33.4 3.2 28 34-61 186-218 (418)
33 3sds_A Ornithine carbamoyltran 31.7 25 0.00085 33.0 2.8 25 35-61 187-211 (353)
34 4f2g_A Otcase 1, ornithine car 30.5 27 0.00093 32.0 2.8 26 34-61 152-177 (309)
35 3csu_A Protein (aspartate carb 29.8 30 0.001 31.8 2.9 29 33-61 151-179 (310)
36 4ep1_A Otcase, ornithine carba 29.5 29 0.00099 32.4 2.8 26 34-61 177-202 (340)
37 3gd5_A Otcase, ornithine carba 28.9 30 0.001 32.0 2.8 36 23-60 134-179 (323)
38 1pg5_A Aspartate carbamoyltran 28.6 36 0.0012 31.0 3.2 29 33-61 146-174 (299)
39 4ekn_B Aspartate carbamoyltran 27.7 34 0.0012 31.3 2.9 28 34-61 149-176 (306)
40 4a8t_A Putrescine carbamoyltra 27.7 31 0.0011 32.1 2.7 26 34-61 173-198 (339)
41 4a8p_A Putrescine carbamoyltra 26.1 35 0.0012 32.0 2.7 26 34-61 151-176 (355)
42 3ju3_A Probable 2-oxoacid ferr 25.2 29 0.001 26.8 1.7 48 9-59 39-87 (118)
43 1oth_A Protein (ornithine tran 24.3 33 0.0011 31.7 2.1 26 34-61 153-178 (321)
44 3t6g_B Breast cancer anti-estr 23.3 3 0.0001 36.8 -4.8 17 33-49 143-159 (229)
45 1vlv_A Otcase, ornithine carba 22.0 50 0.0017 30.5 2.9 27 34-61 165-191 (325)
46 3ulk_A Ketol-acid reductoisome 21.4 30 0.001 33.8 1.3 35 18-54 18-56 (491)
47 1ml4_A Aspartate transcarbamoy 20.8 48 0.0016 30.4 2.4 28 34-61 153-180 (308)
No 1
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=96.64 E-value=0.0017 Score=54.96 Aligned_cols=91 Identities=13% Similarity=0.157 Sum_probs=53.2
Q ss_pred cccEEEEeccccccccCcCCceeeeecCceeeccCCHHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCCCCCCCCC
Q 022014 121 NADVLSFNTGHWWSHEGSLQGWDYMESMGTYYQDMDRLVALEKGLRTWANWVDNNIDRSKTRVFFQSISPTHYNPSEWSA 200 (304)
Q Consensus 121 ~~DvlV~ntGhWw~~~~~~~~~~~~~~g~~~~~~~~~~~ay~~al~t~~~wv~~~~~~~k~~vffRt~SP~Hf~gg~W~~ 200 (304)
..|+|||+.|..=.. .+ .+.|+..|+++++-+.+.. ...+++|-+..|..... +
T Consensus 74 ~pd~Vvi~~G~ND~~-------------------~~-~~~~~~~l~~ii~~l~~~~--p~~~ii~~~~~P~~~~~--~-- 127 (200)
T 4h08_A 74 KFDVIHFNNGLHGFD-------------------YT-EEEYDKSFPKLIKIIRKYA--PKAKLIWANTTPVRTGE--G-- 127 (200)
T ss_dssp CCSEEEECCCSSCTT-------------------SC-HHHHHHHHHHHHHHHHHHC--TTCEEEEECCCCCEESG--G--
T ss_pred CCCeEEEEeeeCCCC-------------------CC-HHHHHHHHHHHHHHHhhhC--CCccEEEeccCCCcccc--c--
Confidence 579999999875110 11 3578888988888775432 35678888888765321 0
Q ss_pred CCCCCCCCCCCCCCccCCCCCCCCCCchHHHHHHHHHHhcCCCeEEeecccccc
Q 022014 201 GSTSSTAKNCYGETAPMSGTTYPGAYPDQMRVVDAVIRDMHSPAYLLDITMLSE 254 (304)
Q Consensus 201 ~~~~~~gg~C~~~t~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lLdIt~ls~ 254 (304)
+... .+. .......++++++++++.+ +.++|+...+.
T Consensus 128 -------~~~~---~~~-----~~~~~~~n~~~~~~a~~~~--v~~iD~~~~~~ 164 (200)
T 4h08_A 128 -------MKEF---API-----TERLNVRNQIALKHINRAS--IEVNDLWKVVI 164 (200)
T ss_dssp -------GCEE---CTH-----HHHHHHHHHHHHHHHHHTT--CEEECHHHHHT
T ss_pred -------cccc---chh-----HHHHHHHHHHHHHHhhhcc--eEEEecHHhHh
Confidence 0000 000 0000123666777766654 89999876553
No 2
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=75.70 E-value=0.91 Score=36.86 Aligned_cols=78 Identities=10% Similarity=0.100 Sum_probs=45.8
Q ss_pred cccEEEEeccccccccCcCCceeeeecCceeeccCCHHHHHHHHHHHHHHHHHhhcCCCCceEEEeec-CCCCCCCCCCC
Q 022014 121 NADVLSFNTGHWWSHEGSLQGWDYMESMGTYYQDMDRLVALEKGLRTWANWVDNNIDRSKTRVFFQSI-SPTHYNPSEWS 199 (304)
Q Consensus 121 ~~DvlV~ntGhWw~~~~~~~~~~~~~~g~~~~~~~~~~~ay~~al~t~~~wv~~~~~~~k~~vffRt~-SP~Hf~gg~W~ 199 (304)
..|++|+..|.-=. . .+ .+ .+.|+..++.+++.+.+. ...|++-++ .|..+.
T Consensus 66 ~pd~vvi~~G~ND~----------~-~~------~~-~~~~~~~~~~~i~~~~~~----~~~vvl~~~~~p~~~~----- 118 (185)
T 3hp4_A 66 EPTHVLIELGANDG----------L-RG------FP-VKKMQTNLTALVKKSQAA----NAMTALMEIYIPPNYG----- 118 (185)
T ss_dssp CCSEEEEECCHHHH----------H-TT------CC-HHHHHHHHHHHHHHHHHT----TCEEEEECCCCCSTTC-----
T ss_pred CCCEEEEEeecccC----------C-CC------cC-HHHHHHHHHHHHHHHHHc----CCeEEEEeCCCCCccc-----
Confidence 57999999985310 0 01 11 367888898888877653 346666654 333210
Q ss_pred CCCCCCCCCCCCCCCccCCCCCCCCCCchHHHHHHHHHHhcCCCeEEeecc
Q 022014 200 AGSTSSTAKNCYGETAPMSGTTYPGAYPDQMRVVDAVIRDMHSPAYLLDIT 250 (304)
Q Consensus 200 ~~~~~~~gg~C~~~t~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lLdIt 250 (304)
. +. ....+++++++.++.+ +.++|+.
T Consensus 119 --------~----~~-----------~~~~~~~~~~~a~~~~--~~~vd~~ 144 (185)
T 3hp4_A 119 --------P----RY-----------SKMFTSSFTQISEDTN--AHLMNFF 144 (185)
T ss_dssp --------H----HH-----------HHHHHHHHHHHHHHHC--CEEECCT
T ss_pred --------H----HH-----------HHHHHHHHHHHHHHcC--CEEEcch
Confidence 0 00 0234677777776654 7888875
No 3
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=75.30 E-value=0.82 Score=38.57 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCC
Q 022014 159 VALEKGLRTWANWVDNNIDRSKTRVFFQSISPTH 192 (304)
Q Consensus 159 ~ay~~al~t~~~wv~~~~~~~k~~vffRt~SP~H 192 (304)
+.+...++++++-+.+ ..++|++-|..|..
T Consensus 101 ~~~~~~l~~ii~~~~~----~~~~iil~~~~P~~ 130 (209)
T 4hf7_A 101 DYTFGNIASMAELAKA----NKIKVILTSVLPAA 130 (209)
T ss_dssp HHHHHHHHHHHHHHHH----TTCEEEEECCCCCS
T ss_pred HHHHHHHHHhhHHHhc----cCceEEEEeeeccC
Confidence 4555667776655432 35679999888754
No 4
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=68.73 E-value=1.7 Score=35.66 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEee
Q 022014 158 LVALEKGLRTWANWVDNNIDRSKTRVFFQS 187 (304)
Q Consensus 158 ~~ay~~al~t~~~wv~~~~~~~k~~vffRt 187 (304)
.+.|+..++.+++.+.+. ..++++-|
T Consensus 112 ~~~~~~~l~~~i~~~~~~----~~~vil~~ 137 (216)
T 3rjt_A 112 IDEYRDTLRHLVATTKPR----VREMFLLS 137 (216)
T ss_dssp HHHHHHHHHHHHHHHGGG----SSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhc----CCeEEEEC
Confidence 468889999988887653 45677765
No 5
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=62.28 E-value=2.2 Score=35.83 Aligned_cols=53 Identities=11% Similarity=0.037 Sum_probs=32.2
Q ss_pred cccEEEEeccccccccCcCCceeeeecCceeeccCCHHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCC
Q 022014 121 NADVLSFNTGHWWSHEGSLQGWDYMESMGTYYQDMDRLVALEKGLRTWANWVDNNIDRSKTRVFFQSISPT 191 (304)
Q Consensus 121 ~~DvlV~ntGhWw~~~~~~~~~~~~~~g~~~~~~~~~~~ay~~al~t~~~wv~~~~~~~k~~vffRt~SP~ 191 (304)
..|++|+..|.==... .+. ...+ .+.|+..++.+++-+.+. ..+|++-+..|.
T Consensus 72 ~pd~vvi~~G~ND~~~----------~~~---~~~~-~~~~~~~l~~~i~~~~~~----~~~vil~~~~p~ 124 (240)
T 3mil_A 72 NIVMATIFLGANDACS----------AGP---QSVP-LPEFIDNIRQMVSLMKSY----HIRPIIIGPGLV 124 (240)
T ss_dssp CEEEEEEECCTTTTSS----------SST---TCCC-HHHHHHHHHHHHHHHHHT----TCEEEEECCCCC
T ss_pred CCCEEEEEeecCcCCc----------cCC---CCCC-HHHHHHHHHHHHHHHHHc----CCeEEEEcCCCC
Confidence 5799999998631100 000 0112 357888888888877543 347888876653
No 6
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=61.37 E-value=2.3 Score=34.71 Aligned_cols=46 Identities=13% Similarity=0.048 Sum_probs=28.8
Q ss_pred cccEEEEeccccccccCcCCceeeeecCceeeccCCHHHHHHHHHHHHHHHHHhhcCCCCceEEEeec
Q 022014 121 NADVLSFNTGHWWSHEGSLQGWDYMESMGTYYQDMDRLVALEKGLRTWANWVDNNIDRSKTRVFFQSI 188 (304)
Q Consensus 121 ~~DvlV~ntGhWw~~~~~~~~~~~~~~g~~~~~~~~~~~ay~~al~t~~~wv~~~~~~~k~~vffRt~ 188 (304)
..|++|+..|.==. . .+ .+ .+.|+..++.+++.+.+. ..++++-+.
T Consensus 62 ~pd~Vii~~G~ND~----------~-~~------~~-~~~~~~~l~~li~~~~~~----~~~vil~~~ 107 (190)
T 1ivn_A 62 QPRWVLVELGGNDG----------L-RG------FQ-PQQTEQTLRQILQDVKAA----NAEPLLMQI 107 (190)
T ss_dssp CCSEEEEECCTTTT----------S-SS------CC-HHHHHHHHHHHHHHHHHT----TCEEEEECC
T ss_pred CCCEEEEEeecccc----------c-cC------CC-HHHHHHHHHHHHHHHHHc----CCCEEEEec
Confidence 46999999885311 0 01 12 357888888888877643 246777664
No 7
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=60.10 E-value=2.3 Score=34.29 Aligned_cols=89 Identities=9% Similarity=0.017 Sum_probs=48.6
Q ss_pred ccccEEEEeccccccccCcCCceeeeecCceeeccCCHHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCCCCCCCC
Q 022014 120 LNADVLSFNTGHWWSHEGSLQGWDYMESMGTYYQDMDRLVALEKGLRTWANWVDNNIDRSKTRVFFQSISPTHYNPSEWS 199 (304)
Q Consensus 120 ~~~DvlV~ntGhWw~~~~~~~~~~~~~~g~~~~~~~~~~~ay~~al~t~~~wv~~~~~~~k~~vffRt~SP~Hf~gg~W~ 199 (304)
...|++|+..|.-=. ...+ ..+ .+.|+..++.+++.+. ..++++-+..|...
T Consensus 66 ~~pd~vvi~~G~ND~----------~~~~-----~~~-~~~~~~~l~~~i~~~~------~~~vi~~~~~p~~~------ 117 (195)
T 1yzf_A 66 EKPDEVVIFFGANDA----------SLDR-----NIT-VATFRENLETMIHEIG------SEKVILITPPYADS------ 117 (195)
T ss_dssp GCCSEEEEECCTTTT----------CTTS-----CCC-HHHHHHHHHHHHHHHC------GGGEEEECCCCCCT------
T ss_pred cCCCEEEEEeecccc----------CccC-----CCC-HHHHHHHHHHHHHHhc------CCEEEEEcCCCCcc------
Confidence 357999999886311 1000 112 3577888888776553 45688877766431
Q ss_pred CCCCCCCCCCCCCCCccCCCCCCCCCCchHHHHHHHHHHhcCCCeEEeecccccc
Q 022014 200 AGSTSSTAKNCYGETAPMSGTTYPGAYPDQMRVVDAVIRDMHSPAYLLDITMLSE 254 (304)
Q Consensus 200 ~~~~~~~gg~C~~~t~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lLdIt~ls~ 254 (304)
..|. ..........++.++++.++. .+.++|+.....
T Consensus 118 --------~~~~--------~~~~~~~~~~n~~~~~~a~~~--~~~~iD~~~~~~ 154 (195)
T 1yzf_A 118 --------GRRP--------ERPQTRIKELVKVAQEVGAAH--NLPVIDLYKAMT 154 (195)
T ss_dssp --------TTCT--------TSCHHHHHHHHHHHHHHHHHT--TCCEECHHHHHH
T ss_pred --------ccch--------hhhHHHHHHHHHHHHHHHHHh--CCeEEehHHHHh
Confidence 1110 000000012356666666665 488999887543
No 8
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=56.56 E-value=28 Score=28.92 Aligned_cols=25 Identities=12% Similarity=0.025 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHhcCCCeEEeecccccc
Q 022014 228 DQMRVVDAVIRDMHSPAYLLDITMLSE 254 (304)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~lLdIt~ls~ 254 (304)
..+++++++.++.+ +.++|+...+.
T Consensus 161 ~~~~~i~~~a~~~~--v~~iD~~~~~~ 185 (232)
T 3dc7_A 161 DYEAAIAQMTADYG--VPHLSLYRDAG 185 (232)
T ss_dssp HHHHHHHHHHHHHT--CCEEEHHHHSS
T ss_pred HHHHHHHHHHHHcC--CcEEecccccC
Confidence 35777787777664 78899987654
No 9
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=55.04 E-value=3.2 Score=34.27 Aligned_cols=107 Identities=16% Similarity=0.071 Sum_probs=54.1
Q ss_pred ccEEEEeccccccccCcCCceeeeecCceeeccCCHHHHHHHHHHHHHHHHHhhcC-----CCCceEEEeecCCCCCCCC
Q 022014 122 ADVLSFNTGHWWSHEGSLQGWDYMESMGTYYQDMDRLVALEKGLRTWANWVDNNID-----RSKTRVFFQSISPTHYNPS 196 (304)
Q Consensus 122 ~DvlV~ntGhWw~~~~~~~~~~~~~~g~~~~~~~~~~~ay~~al~t~~~wv~~~~~-----~~k~~vffRt~SP~Hf~gg 196 (304)
.|++|+..|.-=... . .+ .+ .+.|+..++.+++.+.+.-. ..+.+|++-+..|.. ..
T Consensus 84 ~d~vvi~~G~ND~~~----~-----~~------~~-~~~~~~~l~~li~~~~~~~~~~~~~~P~~~iil~~~p~~~--~~ 145 (216)
T 2q0q_A 84 LDLVIIMLGTNDTKA----Y-----FR------RT-PLDIALGMSVLVTQVLTSAGGVGTTYPAPKVLVVSPPPLA--PM 145 (216)
T ss_dssp CSEEEEECCTGGGSG----G-----GC------CC-HHHHHHHHHHHHHHHHTCTTTTTBCCCCCEEEEEECCCCC--CC
T ss_pred CCEEEEEecCcccch----h-----cC------CC-HHHHHHHHHHHHHHHHHhcccccccCCCCeEEEEeCCCcC--cc
Confidence 499999988641100 0 01 12 35788889888887764320 024567777653322 10
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCCCCCCCchHHHHHHHHHHhcCCCeEEeecccccc-cccCC-CCC
Q 022014 197 EWSAGSTSSTAKNCYGETAPMSGTTYPGAYPDQMRVVDAVIRDMHSPAYLLDITMLSE-LRKDG-HPS 262 (304)
Q Consensus 197 ~W~~~~~~~~gg~C~~~t~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lLdIt~ls~-~R~Dg-Hp~ 262 (304)
|.. .+. . -+.. ........++.++++.++.+ +.++|+..... +..|| ||+
T Consensus 146 -~~~--------~~~-~--~~~~--~~~~~~~~n~~~~~~a~~~~--v~~iD~~~~~~~~~~Dg~Hpn 197 (216)
T 2q0q_A 146 -PHP--------WFQ-L--IFEG--GEQKTTELARVYSALASFMK--VPFFDAGSVISTDGVDGIHFT 197 (216)
T ss_dssp -CSH--------HHH-H--HTTT--HHHHHTTHHHHHHHHHHHHT--CCEEEGGGTCCCCSTTSSSCC
T ss_pred -cCC--------cch-h--hhcc--HHHHHHHHHHHHHHHHHHcC--CcEEchhHhcccCCCCccCcC
Confidence 211 110 0 0000 00000124677777776655 78899987653 34443 544
No 10
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=53.11 E-value=4.5 Score=33.40 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=33.4
Q ss_pred cccEEEEeccccccccCcCCceeeeecCceeeccCCHHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCC
Q 022014 121 NADVLSFNTGHWWSHEGSLQGWDYMESMGTYYQDMDRLVALEKGLRTWANWVDNNIDRSKTRVFFQSISPTH 192 (304)
Q Consensus 121 ~~DvlV~ntGhWw~~~~~~~~~~~~~~g~~~~~~~~~~~ay~~al~t~~~wv~~~~~~~k~~vffRt~SP~H 192 (304)
..|++|+..|.- +... + .+ .+.|+..++.+++.+.+.. ...+|++-+..|..
T Consensus 85 ~pd~vvi~~G~N----------D~~~-~------~~-~~~~~~~l~~~i~~l~~~~--p~~~iil~~~~p~~ 136 (214)
T 2hsj_A 85 AVDKIFLLIGTN----------DIGK-D------VP-VNEALNNLEAIIQSVARDY--PLTEIKLLSILPVN 136 (214)
T ss_dssp CCCEEEEECCHH----------HHHT-T------CC-HHHHHHHHHHHHHHHHHHC--TTCEEEEECCCCCC
T ss_pred CCCEEEEEEecC----------cCCc-C------CC-HHHHHHHHHHHHHHHHHhC--CCCeEEEEecCCCC
Confidence 469999988852 1110 1 12 3567888888888776542 24678888887654
No 11
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=52.98 E-value=4.8 Score=33.86 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=14.2
Q ss_pred HhcCCeEEEEeccchhh
Q 022014 33 KMKGKTVMFVGDSLGLN 49 (304)
Q Consensus 33 ~lrgK~l~FVGDSl~Rn 49 (304)
.+..++|+|+|||++..
T Consensus 18 ~~~~~~i~~lGDSit~G 34 (232)
T 3dc7_A 18 HVSFKRPAWLGDSITAN 34 (232)
T ss_dssp CBCCSSEEEEESTTTST
T ss_pred CCCcceEEEEccccccc
Confidence 35568999999999985
No 12
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=51.93 E-value=4.2 Score=33.17 Aligned_cols=92 Identities=12% Similarity=0.058 Sum_probs=50.8
Q ss_pred cccEEEEeccccccccCcCCceeeeecCceeeccCCHHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCCCCCCCCC
Q 022014 121 NADVLSFNTGHWWSHEGSLQGWDYMESMGTYYQDMDRLVALEKGLRTWANWVDNNIDRSKTRVFFQSISPTHYNPSEWSA 200 (304)
Q Consensus 121 ~~DvlV~ntGhWw~~~~~~~~~~~~~~g~~~~~~~~~~~ay~~al~t~~~wv~~~~~~~k~~vffRt~SP~Hf~gg~W~~ 200 (304)
..|++||..|.==. ..... ..+ .+.|+..++.+++.+.+ ....+++-+..|..-. .|..
T Consensus 74 ~pd~vvi~~G~ND~----------~~~~~----~~~-~~~~~~~~~~~i~~~~~----~~~~vil~~~~p~~~~--~~~~ 132 (204)
T 3p94_A 74 KPKAVVILAGINDI----------AHNNG----VIA-LENVFGNLVSMAELAKA----NHIKVIFCSVLPAYDF--PWRP 132 (204)
T ss_dssp CEEEEEEECCHHHH----------TTTTS----CCC-HHHHHHHHHHHHHHHHH----TTCEEEEECCCCCSCB--TTBT
T ss_pred CCCEEEEEeecCcc----------ccccC----CCC-HHHHHHHHHHHHHHHHh----CCCeEEEEeCCCCCCC--CCCc
Confidence 46999999885310 00000 012 35778888888877654 2457888887765411 1221
Q ss_pred CCCCCCCCCCCCCCccCCCCCCCCCCchHHHHHHHHHHhcCCCeEEeeccccc
Q 022014 201 GSTSSTAKNCYGETAPMSGTTYPGAYPDQMRVVDAVIRDMHSPAYLLDITMLS 253 (304)
Q Consensus 201 ~~~~~~gg~C~~~t~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lLdIt~ls 253 (304)
-. .........++.++++.++. .+.++|+....
T Consensus 133 ----------------~~--~~~~~~~~~n~~l~~~a~~~--~v~~iD~~~~~ 165 (204)
T 3p94_A 133 ----------------GM--QPADKVIQLNKWIKEYADKN--GLTYVDYHSAM 165 (204)
T ss_dssp ----------------TC--CCHHHHHHHHHHHHHHHHHT--TCEEECHHHHH
T ss_pred ----------------cc--cHHHHHHHHHHHHHHHHHHc--CCcEEchhhhh
Confidence 00 00000112466677776665 48999998765
No 13
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=51.90 E-value=3.9 Score=34.75 Aligned_cols=76 Identities=13% Similarity=0.142 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCC---CCceEEEeecCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCchHHHHHH
Q 022014 158 LVALEKGLRTWANWVDNNIDR---SKTRVFFQSISPTHYNPSEWSAGSTSSTAKNCYGETAPMSGTTYPGAYPDQMRVVD 234 (304)
Q Consensus 158 ~~ay~~al~t~~~wv~~~~~~---~k~~vffRt~SP~Hf~gg~W~~~~~~~~gg~C~~~t~P~~~~~~~~~~~~~~~~~~ 234 (304)
.+.|+..++.+++-+.+.... ..+.|++-+..|..-.. + .|+............+++++
T Consensus 122 ~~~~~~~l~~li~~ir~~~~~~~~p~~~iil~~p~~~~~~~------------~------~~~~~~~~~~~~~~~~~~~~ 183 (232)
T 3dci_A 122 AEAAVSGMRRLAQIVETFIYKPREAVPKLLIVAPPPCVAGP------------G------GEPAGGRDIEQSMRLAPLYR 183 (232)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSTTCCCEEEEEECCCCCCCT------------T------SSCGGGCCHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCcCccc------------C------cccccccHHHHHHHHHHHHH
Confidence 457888899988887653210 35677777744432210 1 01111000000012467777
Q ss_pred HHHHhcCCCeEEeeccccc
Q 022014 235 AVIRDMHSPAYLLDITMLS 253 (304)
Q Consensus 235 ~~~~~~~~~v~lLdIt~ls 253 (304)
++.++.+ +.++|+....
T Consensus 184 ~~a~~~~--v~~iD~~~~~ 200 (232)
T 3dci_A 184 KLAAELG--HHFFDAGSVA 200 (232)
T ss_dssp HHHHHHT--CEEEEGGGTC
T ss_pred HHHHHhC--CeEEcchHhc
Confidence 7777655 7899987543
No 14
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=50.66 E-value=3.6 Score=34.32 Aligned_cols=90 Identities=17% Similarity=0.076 Sum_probs=49.7
Q ss_pred cccEEEEeccccccccCcCCceeee-ecCceeeccCCHHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCCCCCCCC
Q 022014 121 NADVLSFNTGHWWSHEGSLQGWDYM-ESMGTYYQDMDRLVALEKGLRTWANWVDNNIDRSKTRVFFQSISPTHYNPSEWS 199 (304)
Q Consensus 121 ~~DvlV~ntGhWw~~~~~~~~~~~~-~~g~~~~~~~~~~~ay~~al~t~~~wv~~~~~~~k~~vffRt~SP~Hf~gg~W~ 199 (304)
..|++|+..|.= . .. ..+ ....+ .+.|+..++.+++-+.+. .+|++-+..|.-..
T Consensus 88 ~pd~vvi~~G~N--D--------~~~~~~---~~~~~-~~~~~~~l~~li~~l~~~-----~~iil~~~~p~~~~----- 143 (218)
T 1vjg_A 88 YNSLVVFSFGLN--D--------TTLENG---KPRVS-IAETIKNTREILTQAKKL-----YPVLMISPAPYIEQ----- 143 (218)
T ss_dssp SEEEEEEECCHH--H--------HCEETT---EESSC-HHHHHHHHHHHHHHHHHH-----SCEEEECCCCCCCT-----
T ss_pred CCCEEEEEecCC--c--------chhhcc---cccCC-HHHHHHHHHHHHHHHHHh-----CcEEEECCCCcccc-----
Confidence 579999998852 1 11 000 01122 357888888888877654 46888776543210
Q ss_pred CCCCCCCCCCCCCCCccCCCCCCCCCCchHHHHHHHHHHhcCCCeEEeecccccc
Q 022014 200 AGSTSSTAKNCYGETAPMSGTTYPGAYPDQMRVVDAVIRDMHSPAYLLDITMLSE 254 (304)
Q Consensus 200 ~~~~~~~gg~C~~~t~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lLdIt~ls~ 254 (304)
.+ .++ .......++.+++++++. .+.++|+.....
T Consensus 144 ---------~~----~~~-----~~~~~~~n~~l~~~a~~~--~v~~iD~~~~~~ 178 (218)
T 1vjg_A 144 ---------QD----PGR-----RRRTIDLSQQLALVCQDL--DVPYLDVFPLLE 178 (218)
T ss_dssp ---------TC----TTH-----HHHHHHHHHHHHHHHHHH--TCCEECCTGGGS
T ss_pred ---------cc----chH-----HHHHHHHHHHHHHHHHHc--CCcEEehHHhhc
Confidence 01 000 000112466677766655 488999986543
No 15
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=50.64 E-value=8 Score=32.64 Aligned_cols=49 Identities=8% Similarity=0.171 Sum_probs=31.4
Q ss_pred cccEEEEeccccccccCcCCceeeeecCceeeccCCHHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCC
Q 022014 121 NADVLSFNTGHWWSHEGSLQGWDYMESMGTYYQDMDRLVALEKGLRTWANWVDNNIDRSKTRVFFQSISPT 191 (304)
Q Consensus 121 ~~DvlV~ntGhWw~~~~~~~~~~~~~~g~~~~~~~~~~~ay~~al~t~~~wv~~~~~~~k~~vffRt~SP~ 191 (304)
..|++||..|.-=. | .+ .+.|...++.+++.+.+.. ...+|++-+..|.
T Consensus 94 ~pd~vvi~~G~ND~-------------~------~~-~~~~~~~l~~~i~~l~~~~--p~~~iil~~~~p~ 142 (229)
T 1fxw_F 94 KPKVIVVWVGTNNH-------------E------NT-AEEVAGGIEAIVQLINTRQ--PQAKIIVLGLLPR 142 (229)
T ss_dssp CCSEEEEECCTTCT-------------T------SC-HHHHHHHHHHHHHHHHHHC--TTCEEEEECCCCC
T ss_pred CCCEEEEEEecCCC-------------C------CC-HHHHHHHHHHHHHHHHHHC--CCCeEEEEeCCCC
Confidence 46999998875411 1 11 3567788888888776542 2456888776654
No 16
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=49.50 E-value=6.7 Score=34.25 Aligned_cols=78 Identities=4% Similarity=0.018 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCC-CCC-CchHHHHHHHHH
Q 022014 160 ALEKGLRTWANWVDNNIDRSKTRVFFQSISPTHYNPSEWSAGSTSSTAKNCYGETAPMSGTTY-PGA-YPDQMRVVDAVI 237 (304)
Q Consensus 160 ay~~al~t~~~wv~~~~~~~k~~vffRt~SP~Hf~gg~W~~~~~~~~gg~C~~~t~P~~~~~~-~~~-~~~~~~~~~~~~ 237 (304)
.|+..|+.+++-+.+.. ..++|++-+..| .....|. | ..-.|...... ... ....++.+++++
T Consensus 142 ~~~~~l~~li~~lr~~~--p~a~Iilitp~~--~~~~~~~----------~-~~~~p~~~~~~~~~~~~~~~n~~i~~~a 206 (274)
T 3bzw_A 142 TYRGRINIGITQLKKLF--PDKQIVLLTPLH--RSLANFG----------D-KNVQPDESYQNGCGEYIDAYVQAIKEAG 206 (274)
T ss_dssp SHHHHHHHHHHHHHHHC--TTSEEEEECCCC--CCCEECS----------T-TEEECCTTBCCTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC--CCCeEEEEeccc--ccccccc----------c-cccCcccccchhhHHHHHHHHHHHHHHH
Confidence 57777888777775542 246788855433 2111111 1 11133321100 011 123577788877
Q ss_pred HhcCCCeEEeecccccc
Q 022014 238 RDMHSPAYLLDITMLSE 254 (304)
Q Consensus 238 ~~~~~~v~lLdIt~ls~ 254 (304)
++.+ +.++|+..++.
T Consensus 207 ~~~~--v~~vD~~~~~~ 221 (274)
T 3bzw_A 207 NIWG--IPVIDFNAVTG 221 (274)
T ss_dssp HHHT--CCEECHHHHTC
T ss_pred HHcC--CCEEcchhhhc
Confidence 7655 78999988664
No 17
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=46.05 E-value=6.7 Score=33.10 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=32.3
Q ss_pred cccEEEEeccccccccCcCCceeeeecCceeeccCCHHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCC
Q 022014 121 NADVLSFNTGHWWSHEGSLQGWDYMESMGTYYQDMDRLVALEKGLRTWANWVDNNIDRSKTRVFFQSISPT 191 (304)
Q Consensus 121 ~~DvlV~ntGhWw~~~~~~~~~~~~~~g~~~~~~~~~~~ay~~al~t~~~wv~~~~~~~k~~vffRt~SP~ 191 (304)
..|++||..|.-=. . .+ .+.|...++.+++.+.+.. ...+|++-+..|.
T Consensus 93 ~pd~vvi~~G~ND~----------~---------~~-~~~~~~~l~~~i~~l~~~~--p~~~ii~~~~~p~ 141 (232)
T 1es9_A 93 RPKIVVVWVGTNNH----------G---------HT-AEQVTGGIKAIVQLVNERQ--PQARVVVLGLLPR 141 (232)
T ss_dssp CCSEEEEECCTTCT----------T---------SC-HHHHHHHHHHHHHHHHHHS--TTCEEEEECCCCC
T ss_pred CCCEEEEEeecCCC----------C---------CC-HHHHHHHHHHHHHHHHHHC--CCCeEEEecCCCC
Confidence 57999998875311 0 11 3567788888888776542 2567888887763
No 18
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=42.72 E-value=6 Score=33.02 Aligned_cols=14 Identities=36% Similarity=0.297 Sum_probs=11.8
Q ss_pred CCeEEEEeccchhh
Q 022014 36 GKTVMFVGDSLGLN 49 (304)
Q Consensus 36 gK~l~FVGDSl~Rn 49 (304)
..+|+|+|||++..
T Consensus 5 ~~~i~~~GDSit~G 18 (215)
T 2vpt_A 5 TIKIMPVGDSCTEG 18 (215)
T ss_dssp EEEEEEEESHHHHT
T ss_pred ceEEEecccccccC
Confidence 35799999999975
No 19
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus}
Probab=41.20 E-value=8.8 Score=35.19 Aligned_cols=48 Identities=6% Similarity=0.106 Sum_probs=28.5
Q ss_pred cccEEEEeccccccccCcCCceeeeecCceeeccCCHHHHHHHHHHHHHHHHHhhcCCCCceEEEee
Q 022014 121 NADVLSFNTGHWWSHEGSLQGWDYMESMGTYYQDMDRLVALEKGLRTWANWVDNNIDRSKTRVFFQS 187 (304)
Q Consensus 121 ~~DvlV~ntGhWw~~~~~~~~~~~~~~g~~~~~~~~~~~ay~~al~t~~~wv~~~~~~~k~~vffRt 187 (304)
..|+|||+.|-= . .. .+ ....+.|+.+++.+++-+.+.. .++.|++-+
T Consensus 225 ~Pd~VvI~lG~N--D--------~~-~~------~~~~~~~~~~l~~li~~ir~~~--p~~~I~l~~ 272 (347)
T 2waa_A 225 QPDLIISAIGTN--D--------FS-PG------IPDRATYINTYTRFVRTLLDNH--PQATIVLTE 272 (347)
T ss_dssp CCSEEEECCCHH--H--------HS-SS------CCCHHHHHHHHHHHHHHHHHHC--TTCEEEECC
T ss_pred CCCEEEEEcccc--C--------CC-CC------CCcHHHHHHHHHHHHHHHHHHC--CCCEEEEEe
Confidence 569999998742 0 00 00 0123577888888887775442 255677755
No 20
>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate esterase family 2, hydrolase; 2.00A {Cellvibrio japonicus}
Probab=39.54 E-value=10 Score=35.10 Aligned_cols=28 Identities=4% Similarity=0.108 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEee
Q 022014 158 LVALEKGLRTWANWVDNNIDRSKTRVFFQS 187 (304)
Q Consensus 158 ~~ay~~al~t~~~wv~~~~~~~k~~vffRt 187 (304)
.+.|+.+++.+++-+.+.. .+.+|++-+
T Consensus 266 ~~~~~~~l~~li~~ir~~~--p~a~Iil~~ 293 (366)
T 2w9x_A 266 HADYVANYVKFVKQLHSNN--ARAQFILMN 293 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHC--CCCeEEEEe
Confidence 3578888888888776542 245677766
No 21
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=38.39 E-value=18 Score=33.20 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=27.3
Q ss_pred CCCHHHHHH----------Hhc-CCeEEEEeccchhhHHHHHHHHhhcc
Q 022014 24 RFNGLEFLV----------KMK-GKTVMFVGDSLGLNQWESLICMIHAA 61 (304)
Q Consensus 24 rfd~~~fl~----------~lr-gK~l~FVGDSl~Rnq~~SLlClL~~~ 61 (304)
.+-|.+.|. .+. |++|+|||| .-|...|++.++..-
T Consensus 123 ~~HPtQaLaDl~Ti~e~~g~l~~gl~va~vGD--~~~va~Sl~~~~~~~ 169 (307)
T 3tpf_A 123 LYHPTQVLGDLFTIKEWNKMQNGIAKVAFIGD--SNNMCNSWLITAAIL 169 (307)
T ss_dssp SCCHHHHHHHHHHHHHTTCCGGGCCEEEEESC--SSHHHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCCCCCCCEEEEEcC--CCccHHHHHHHHHHc
Confidence 566766443 257 999999999 357999999988753
No 22
>1fll_X B-cell surface antigen CD40; TRAF3 with CD40 peptide, TNF signaling, apoptosis; 3.50A {Homo sapiens}
Probab=36.94 E-value=19 Score=20.65 Aligned_cols=11 Identities=18% Similarity=0.114 Sum_probs=9.1
Q ss_pred CCCcccccCCC
Q 022014 279 SADCSHWCLPG 289 (304)
Q Consensus 279 ~~DC~HWCLPG 289 (304)
-+|-+|||+|=
T Consensus 6 vqeTl~~~qPV 16 (26)
T 1fll_X 6 VQETLHGSQPV 16 (26)
T ss_dssp CCCCCCCSSSC
T ss_pred hhHHhhcCccc
Confidence 47999999984
No 23
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A*
Probab=36.73 E-value=9.8 Score=34.65 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEee
Q 022014 158 LVALEKGLRTWANWVDNNIDRSKTRVFFQS 187 (304)
Q Consensus 158 ~~ay~~al~t~~~wv~~~~~~~k~~vffRt 187 (304)
.+.|+.+++.+++-+.+.. .+++|++-+
T Consensus 233 ~~~~~~~l~~li~~ir~~~--p~a~Iil~~ 260 (341)
T 2wao_A 233 KTKFVTAYKNLISEVRRNY--PDAHIFCCV 260 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHC--CCCeEEEEe
Confidence 3577888888887775432 245777776
No 24
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=36.61 E-value=21 Score=34.00 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=22.2
Q ss_pred hcCCeEEEEec---cchh--hHHHHHHHHhhcc
Q 022014 34 MKGKTVMFVGD---SLGL--NQWESLICMIHAA 61 (304)
Q Consensus 34 lrgK~l~FVGD---Sl~R--nq~~SLlClL~~~ 61 (304)
|+|++|++||| |.+| |...||+.++..-
T Consensus 189 l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~l 221 (399)
T 3q98_A 189 LKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRF 221 (399)
T ss_dssp GTTCEEEEECCCCSSCCCCTHHHHHHHHHHGGG
T ss_pred cCCCEEEEEEecccccCcchHHHHHHHHHHHHc
Confidence 57889999998 3455 7889999988754
No 25
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=35.21 E-value=20 Score=33.27 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=23.9
Q ss_pred HhcCCeEEEEeccchhhHHHHHHHHhhcc
Q 022014 33 KMKGKTVMFVGDSLGLNQWESLICMIHAA 61 (304)
Q Consensus 33 ~lrgK~l~FVGDSl~Rnq~~SLlClL~~~ 61 (304)
.+.|++|+||||-.+ |...||+-++..-
T Consensus 158 ~l~gl~va~vGD~~~-~va~Sl~~~~~~~ 185 (328)
T 3grf_A 158 GFKGIKFAYCGDSMN-NVTYDLMRGCALL 185 (328)
T ss_dssp TGGGCCEEEESCCSS-HHHHHHHHHHHHH
T ss_pred ccCCcEEEEeCCCCc-chHHHHHHHHHHc
Confidence 478999999999766 6999999988753
No 26
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=35.10 E-value=21 Score=32.70 Aligned_cols=28 Identities=25% Similarity=0.121 Sum_probs=24.0
Q ss_pred hcCCeEEEEeccchhhHHHHHHHHhhcc
Q 022014 34 MKGKTVMFVGDSLGLNQWESLICMIHAA 61 (304)
Q Consensus 34 lrgK~l~FVGDSl~Rnq~~SLlClL~~~ 61 (304)
+.|++|+||||-..-|...||+.++..-
T Consensus 145 l~glkva~vGD~~~~rva~Sl~~~~~~~ 172 (304)
T 3r7f_A 145 FKGLTVSIHGDIKHSRVARSNAEVLTRL 172 (304)
T ss_dssp CTTCEEEEESCCTTCHHHHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCCcchHHHHHHHHHHc
Confidence 6899999999977668999999888753
No 27
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=34.56 E-value=22 Score=33.48 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.6
Q ss_pred hcCCeEEEEeccchhhHHHHHHHHhhc
Q 022014 34 MKGKTVMFVGDSLGLNQWESLICMIHA 60 (304)
Q Consensus 34 lrgK~l~FVGDSl~Rnq~~SLlClL~~ 60 (304)
++|++|+||||-.+ |...||+.++..
T Consensus 178 l~glkva~vGD~~n-nva~Sl~~~~~~ 203 (365)
T 4amu_A 178 LKNKKIVFIGDYKN-NVGVSTMIGAAF 203 (365)
T ss_dssp CTTCEEEEESSTTS-HHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCc-chHHHHHHHHHH
Confidence 68999999999766 689999998874
No 28
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=33.95 E-value=16 Score=34.46 Aligned_cols=29 Identities=10% Similarity=0.082 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEeecCC
Q 022014 160 ALEKGLRTWANWVDNNIDRSKTRVFFQSISP 190 (304)
Q Consensus 160 ay~~al~t~~~wv~~~~~~~k~~vffRt~SP 190 (304)
.|+..++.+++-+.+.. ..+.|++-+..|
T Consensus 265 ~~~~~l~~li~~ir~~~--P~a~Illv~p~~ 293 (385)
T 3skv_A 265 DFPANLVGFVQIIRERH--PLTPIVLGSSVY 293 (385)
T ss_dssp THHHHHHHHHHHHHTTC--SSSCEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHC--CCCcEEEEcCCC
Confidence 56777777777665432 245688877654
No 29
>1vcc_A DNA topoisomerase I; DNA binding; HET: DNA; 1.60A {Vaccinia virus} SCOP: d.121.1.1
Probab=32.50 E-value=7.1 Score=28.30 Aligned_cols=15 Identities=47% Similarity=0.833 Sum_probs=11.9
Q ss_pred CeEEEEe-ccchhhHH
Q 022014 37 KTVMFVG-DSLGLNQW 51 (304)
Q Consensus 37 K~l~FVG-DSl~Rnq~ 51 (304)
.+++||| ||-+|-|+
T Consensus 55 ~~lIfvG~DSKgrkQY 70 (77)
T 1vcc_A 55 TRLIFVGSDSKGRRQY 70 (77)
T ss_dssp TSEEEEEECTTSCEEE
T ss_pred CceEEEeecCCCceee
Confidence 3599999 88888764
No 30
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=32.19 E-value=18 Score=33.65 Aligned_cols=88 Identities=14% Similarity=0.169 Sum_probs=47.7
Q ss_pred cEEEEeccccccccCcCCceeeeecCceeeccCCHHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCCCCCCCCCCC
Q 022014 123 DVLSFNTGHWWSHEGSLQGWDYMESMGTYYQDMDRLVALEKGLRTWANWVDNNIDRSKTRVFFQSISPTHYNPSEWSAGS 202 (304)
Q Consensus 123 DvlV~ntGhWw~~~~~~~~~~~~~~g~~~~~~~~~~~ay~~al~t~~~wv~~~~~~~k~~vffRt~SP~Hf~gg~W~~~~ 202 (304)
|+|||..|.==. .. +. ....+.|+..|+.+++-+.+. ..++++-| |-.- ...|+.
T Consensus 232 d~VvI~~G~ND~----------~~-~~-----~~~~~~~~~~l~~ii~~lr~~----~a~vilvt--P~~~-~~~~~~-- 286 (375)
T 2o14_A 232 DYFMLQLGINDT----------NP-KH-----KESEAEFKEVMRDMIRQVKAK----GADVILST--PQGR-ATDFTS-- 286 (375)
T ss_dssp CEEEEECCTGGG----------CG-GG-----CCCHHHHHHHHHHHHHHHHTT----TCEEEEEC--CCCC-TTCBCT--
T ss_pred CEEEEEEEccCC----------Cc-cC-----CCCHHHHHHHHHHHHHHHHHC----CCEEEEEC--CCCc-ccccCc--
Confidence 999999986311 00 00 012357888888888776542 34677766 3221 111322
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCchHHHHHHHHHHhcCCCeEEeeccccc
Q 022014 203 TSSTAKNCYGETAPMSGTTYPGAYPDQMRVVDAVIRDMHSPAYLLDITMLS 253 (304)
Q Consensus 203 ~~~~gg~C~~~t~P~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lLdIt~ls 253 (304)
.+.- .......+++++++.++. .+.++|+..++
T Consensus 287 ----~~~~------------~~~~~~~~~~i~~lA~~~--~v~~iDl~~~~ 319 (375)
T 2o14_A 287 ----EGIH------------SSVNRWYRASILALAEEE--KTYLIDLNVLS 319 (375)
T ss_dssp ----TSCB------------CCTTSTTHHHHHHHHHHT--TCEEECHHHHH
T ss_pred ----ccch------------hHHHHHHHHHHHHHHHHc--CCeEEehHHHH
Confidence 1110 011123466777777664 48999998754
No 31
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=32.05 E-value=14 Score=31.45 Aligned_cols=65 Identities=11% Similarity=0.119 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCchHHHHHHHHHHh
Q 022014 160 ALEKGLRTWANWVDNNIDRSKTRVFFQSISPTHYNPSEWSAGSTSSTAKNCYGETAPMSGTTYPGAYPDQMRVVDAVIRD 239 (304)
Q Consensus 160 ay~~al~t~~~wv~~~~~~~k~~vffRt~SP~Hf~gg~W~~~~~~~~gg~C~~~t~P~~~~~~~~~~~~~~~~~~~~~~~ 239 (304)
.|+..|+.+++-+.+. ...+++-|..|.- .|.. |.. . .....+++++++++++
T Consensus 109 ~~~~~l~~~i~~~~~~----g~~vil~tp~p~~----~~~~-------~~~-------~-----~~~~~y~~~~~~vA~~ 161 (233)
T 1k7c_A 109 TFPAYLENAAKLFTAK----GAKVILSSQTPNN----PWET-------GTF-------V-----NSPTRFVEYAELAAEV 161 (233)
T ss_dssp BHHHHHHHHHHHHHHT----TCEEEEECCCCCC----TTTT-------SSC-------C-----CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC----CCEEEEECCCCcc----ccCC-------Ccc-------c-----cchHHHHHHHHHHHHH
Confidence 5677777777665432 3467777655532 2322 111 0 0112457788888877
Q ss_pred cCCCeEEeeccccc
Q 022014 240 MHSPAYLLDITMLS 253 (304)
Q Consensus 240 ~~~~v~lLdIt~ls 253 (304)
.+ +.++|+..++
T Consensus 162 ~~--v~~iD~~~~~ 173 (233)
T 1k7c_A 162 AG--VEYVDHWSYV 173 (233)
T ss_dssp HT--CEEECHHHHH
T ss_pred hC--CeEEecHHHH
Confidence 65 8999997654
No 32
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=31.87 E-value=28 Score=33.39 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=23.1
Q ss_pred hcCCeEEEEec---cchh--hHHHHHHHHhhcc
Q 022014 34 MKGKTVMFVGD---SLGL--NQWESLICMIHAA 61 (304)
Q Consensus 34 lrgK~l~FVGD---Sl~R--nq~~SLlClL~~~ 61 (304)
++|++|++||| |.+| |...||+-++..-
T Consensus 186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~l 218 (418)
T 2yfk_A 186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRL 218 (418)
T ss_dssp GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGG
T ss_pred cCCCEEEEEeccccccCccchHHHHHHHHHHHc
Confidence 56899999997 4566 8999999998754
No 33
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=31.72 E-value=25 Score=32.96 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.6
Q ss_pred cCCeEEEEeccchhhHHHHHHHHhhcc
Q 022014 35 KGKTVMFVGDSLGLNQWESLICMIHAA 61 (304)
Q Consensus 35 rgK~l~FVGDSl~Rnq~~SLlClL~~~ 61 (304)
.|++|+||||- .|...||+.++..-
T Consensus 187 ~glkva~vGD~--~nva~Sl~~~l~~l 211 (353)
T 3sds_A 187 EGLKIAWVGDA--NNVLFDLAIAATKM 211 (353)
T ss_dssp TTCEEEEESCC--CHHHHHHHHHHHHT
T ss_pred CCCEEEEECCC--chHHHHHHHHHHHc
Confidence 89999999997 37999999888754
No 34
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=30.52 E-value=27 Score=32.04 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=22.2
Q ss_pred hcCCeEEEEeccchhhHHHHHHHHhhcc
Q 022014 34 MKGKTVMFVGDSLGLNQWESLICMIHAA 61 (304)
Q Consensus 34 lrgK~l~FVGDSl~Rnq~~SLlClL~~~ 61 (304)
+.|++|+||||- -|...||+.++..-
T Consensus 152 l~glkva~vGD~--~~va~Sl~~~~~~~ 177 (309)
T 4f2g_A 152 IRGKTVAWVGDA--NNMLYTWIQAARIL 177 (309)
T ss_dssp CTTCEEEEESCC--CHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--cchHHHHHHHHHHc
Confidence 689999999994 56999999998753
No 35
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=29.76 E-value=30 Score=31.80 Aligned_cols=29 Identities=21% Similarity=0.121 Sum_probs=24.1
Q ss_pred HhcCCeEEEEeccchhhHHHHHHHHhhcc
Q 022014 33 KMKGKTVMFVGDSLGLNQWESLICMIHAA 61 (304)
Q Consensus 33 ~lrgK~l~FVGDSl~Rnq~~SLlClL~~~ 61 (304)
.+.|++|++|||-..-|...||+-++..-
T Consensus 151 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~ 179 (310)
T 3csu_A 151 RLDNLHVAMVGDLKYGRTVHSLTQALAKF 179 (310)
T ss_dssp CSSSCEEEEESCTTTCHHHHHHHHHHHTS
T ss_pred CcCCcEEEEECCCCCCchHHHHHHHHHhC
Confidence 36899999999966557899999998754
No 36
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=29.46 E-value=29 Score=32.37 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.2
Q ss_pred hcCCeEEEEeccchhhHHHHHHHHhhcc
Q 022014 34 MKGKTVMFVGDSLGLNQWESLICMIHAA 61 (304)
Q Consensus 34 lrgK~l~FVGDSl~Rnq~~SLlClL~~~ 61 (304)
++|++|+||||- -|...||+.++..-
T Consensus 177 l~glkva~vGD~--~nva~Sl~~~~~~~ 202 (340)
T 4ep1_A 177 FKGIKLAYVGDG--NNVCHSLLLASAKV 202 (340)
T ss_dssp CTTCEEEEESCC--CHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--chhHHHHHHHHHHc
Confidence 689999999996 56999999988753
No 37
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=28.91 E-value=30 Score=31.99 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=27.4
Q ss_pred CCCCHHHHHH----------HhcCCeEEEEeccchhhHHHHHHHHhhc
Q 022014 23 IRFNGLEFLV----------KMKGKTVMFVGDSLGLNQWESLICMIHA 60 (304)
Q Consensus 23 prfd~~~fl~----------~lrgK~l~FVGDSl~Rnq~~SLlClL~~ 60 (304)
..+-|.+.|. .++|++|+||||- -|...|++-++..
T Consensus 134 ~~~HPtQaLaDl~Ti~e~~g~l~glkva~vGD~--~rva~Sl~~~~~~ 179 (323)
T 3gd5_A 134 DHEHPCQVVADLLTIRENFGRLAGLKLAYVGDG--NNVAHSLLLGCAK 179 (323)
T ss_dssp SSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCC--CHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhCCCCCCEEEEECCC--CcHHHHHHHHHHH
Confidence 4566765432 2689999999997 6789999988864
No 38
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=28.58 E-value=36 Score=31.04 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=24.2
Q ss_pred HhcCCeEEEEeccchhhHHHHHHHHhhcc
Q 022014 33 KMKGKTVMFVGDSLGLNQWESLICMIHAA 61 (304)
Q Consensus 33 ~lrgK~l~FVGDSl~Rnq~~SLlClL~~~ 61 (304)
.+.|++|++|||-..-|...||+-.+..-
T Consensus 146 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~ 174 (299)
T 1pg5_A 146 TIDGLVFALLGDLKYARTVNSLLRILTRF 174 (299)
T ss_dssp CSTTCEEEEEECCSSCHHHHHHHHHGGGS
T ss_pred CcCCcEEEEECCCCCCchHHHHHHHHHhC
Confidence 36899999999987667899999888754
No 39
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=27.73 E-value=34 Score=31.33 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=23.5
Q ss_pred hcCCeEEEEeccchhhHHHHHHHHhhcc
Q 022014 34 MKGKTVMFVGDSLGLNQWESLICMIHAA 61 (304)
Q Consensus 34 lrgK~l~FVGDSl~Rnq~~SLlClL~~~ 61 (304)
+.|++|+||||-..-|...||+.++..-
T Consensus 149 l~glkva~vGD~~~~rva~Sl~~~~~~~ 176 (306)
T 4ekn_B 149 IDGIKIAFVGDLKYGRTVHSLVYALSLF 176 (306)
T ss_dssp STTCEEEEESCTTTCHHHHHHHHHHHTS
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHhc
Confidence 6899999999976557899999988754
No 40
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=27.72 E-value=31 Score=32.10 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.0
Q ss_pred hcCCeEEEEeccchhhHHHHHHHHhhcc
Q 022014 34 MKGKTVMFVGDSLGLNQWESLICMIHAA 61 (304)
Q Consensus 34 lrgK~l~FVGDSl~Rnq~~SLlClL~~~ 61 (304)
+.|++|+||||- -|...||+.++..-
T Consensus 173 l~glkva~vGD~--~rva~Sl~~~~~~~ 198 (339)
T 4a8t_A 173 LEDCKVVFVGDA--TQVCFSLGLITTKM 198 (339)
T ss_dssp GGGCEEEEESSC--CHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCC--chhHHHHHHHHHHc
Confidence 567999999997 67899999888753
No 41
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=26.11 E-value=35 Score=32.01 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.0
Q ss_pred hcCCeEEEEeccchhhHHHHHHHHhhcc
Q 022014 34 MKGKTVMFVGDSLGLNQWESLICMIHAA 61 (304)
Q Consensus 34 lrgK~l~FVGDSl~Rnq~~SLlClL~~~ 61 (304)
+.|++|+||||- -|...||+.++..-
T Consensus 151 l~glkva~vGD~--~rva~Sl~~~~~~~ 176 (355)
T 4a8p_A 151 LEDCKVVFVGDA--TQVCFSLGLITTKM 176 (355)
T ss_dssp GGGCEEEEESCC--CHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCC--chhHHHHHHHHHHc
Confidence 568899999997 67899999988754
No 42
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=25.23 E-value=29 Score=26.79 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=38.7
Q ss_pred eeeecceeecCccCCCCCHHHHHHHhcC-CeEEEEeccchhhHHHHHHHHhh
Q 022014 9 SISLSVVVLWIVCLIRFNGLEFLVKMKG-KTVMFVGDSLGLNQWESLICMIH 59 (304)
Q Consensus 9 ~~~~~~~~~~~C~Lprfd~~~fl~~lrg-K~l~FVGDSl~Rnq~~SLlClL~ 59 (304)
|++..++.+. .+..||.+.+.+.+++ |+++.|=++. ..|+-++++.-.
T Consensus 39 Gi~v~vi~~r--~~~P~d~~~l~~~~~~~~~vvvvE~~~-~G~l~~~i~~~~ 87 (118)
T 3ju3_A 39 GISANLLYLK--MFSPFPTEFVKNVLSSANLVIDVESNY-TAQAAQMIKLYT 87 (118)
T ss_dssp TCCEEEEEEC--SSCSCCHHHHHHHHTTCSCCCCCCCCC-CCCHHHHHHHHH
T ss_pred CCceEEEEEC--eEecCCHHHHHHHHcCCCEEEEEECCC-CCcHHHHHHHHc
Confidence 5677777777 8889999999999976 5788888875 489999998744
No 43
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=24.30 E-value=33 Score=31.67 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=21.3
Q ss_pred hcCCeEEEEeccchhhHHHHHHHHhhcc
Q 022014 34 MKGKTVMFVGDSLGLNQWESLICMIHAA 61 (304)
Q Consensus 34 lrgK~l~FVGDSl~Rnq~~SLlClL~~~ 61 (304)
+.|++|++|||- .|...||+-++..-
T Consensus 153 l~gl~va~vGD~--~~va~Sl~~~~~~~ 178 (321)
T 1oth_A 153 LKGLTLSWIGDG--NNILHSIMMSAAKF 178 (321)
T ss_dssp CTTCEEEEESCS--SHHHHHHHTTTGGG
T ss_pred cCCcEEEEECCc--hhhHHHHHHHHHHc
Confidence 679999999994 37999998877654
No 44
>3t6g_B Breast cancer anti-estrogen resistance protein 1; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}
Probab=23.29 E-value=3 Score=36.77 Aligned_cols=17 Identities=24% Similarity=0.612 Sum_probs=14.2
Q ss_pred HhcCCeEEEEeccchhh
Q 022014 33 KMKGKTVMFVGDSLGLN 49 (304)
Q Consensus 33 ~lrgK~l~FVGDSl~Rn 49 (304)
.|-+.+++||||.++|+
T Consensus 143 IlsAHKLVfIGDTL~r~ 159 (229)
T 3t6g_B 143 ILSAHKLVFIGDTLSRQ 159 (229)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred EEEeeeeeeecchHHHh
Confidence 46677899999999985
No 45
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=22.03 E-value=50 Score=30.51 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=22.2
Q ss_pred hcCCeEEEEeccchhhHHHHHHHHhhcc
Q 022014 34 MKGKTVMFVGDSLGLNQWESLICMIHAA 61 (304)
Q Consensus 34 lrgK~l~FVGDSl~Rnq~~SLlClL~~~ 61 (304)
+.|++|++|||- .-|...||+-++..-
T Consensus 165 l~gl~va~vGD~-~~rva~Sl~~~~~~~ 191 (325)
T 1vlv_A 165 LKGVKVVFMGDT-RNNVATSLMIACAKM 191 (325)
T ss_dssp STTCEEEEESCT-TSHHHHHHHHHHHHT
T ss_pred cCCcEEEEECCC-CcCcHHHHHHHHHHC
Confidence 689999999993 247999999988754
No 46
>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*
Probab=21.39 E-value=30 Score=33.78 Aligned_cols=35 Identities=31% Similarity=0.390 Sum_probs=26.8
Q ss_pred cCccCCCCCHHHH---HHHhcCCeEEEEe-ccchhhHHHHH
Q 022014 18 WIVCLIRFNGLEF---LVKMKGKTVMFVG-DSLGLNQWESL 54 (304)
Q Consensus 18 ~~C~Lprfd~~~f---l~~lrgK~l~FVG-DSl~Rnq~~SL 54 (304)
..|.+ -+..+| .+.|+||+|++|| -|+++.|-+-|
T Consensus 18 ~~c~~--m~~~eF~~~~~~lkgK~IaVIGyGsQG~AqAlNL 56 (491)
T 3ulk_A 18 GKCRF--MGRDEFADGASYLQGKKVVIVGCGAQGLNQGLNM 56 (491)
T ss_dssp TCCEE--CCGGGGTTTTGGGTTSEEEEESCSHHHHHHHHHH
T ss_pred cccee--ccHHHhcchhHHHcCCEEEEeCCChHhHHHHhHH
Confidence 35665 245555 6789999999999 79999998765
No 47
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=20.79 E-value=48 Score=30.36 Aligned_cols=28 Identities=18% Similarity=0.091 Sum_probs=23.4
Q ss_pred hcCCeEEEEeccchhhHHHHHHHHhhcc
Q 022014 34 MKGKTVMFVGDSLGLNQWESLICMIHAA 61 (304)
Q Consensus 34 lrgK~l~FVGDSl~Rnq~~SLlClL~~~ 61 (304)
+.|++|++|||-..-|...||+-.+..-
T Consensus 153 l~gl~va~vGD~~~~rva~Sl~~~~~~~ 180 (308)
T 1ml4_A 153 IDGLKIGLLGDLKYGRTVHSLAEALTFY 180 (308)
T ss_dssp SSSEEEEEESCTTTCHHHHHHHHHGGGS
T ss_pred CCCeEEEEeCCCCcCchHHHHHHHHHHC
Confidence 6789999999976557899999888754
Done!