BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022015
(304 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZQ6|A Chain A, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|B Chain B, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|C Chain C, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|D Chain D, Adp-Alf4 Complex Of M. Therm. Trc40
Length = 324
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 104 GGGTLHIKVSDAHSWT-CMDLYVFATPYRVTWDYYFLSREHTLEFNEWEGKLEYEYVKNK 162
G TL I AHS + ++ + TP ++T + Y + + + E++ KL+ + N
Sbjct: 42 GKKTLVISTDPAHSLSDSLEREIGHTPTKITENLYAVEIDPEVAMEEYQAKLQEQAAMNP 101
Query: 163 GVSIFLMQAGM 173
G+ + ++Q M
Sbjct: 102 GMGLDMLQDQM 112
>pdb|2XQW|C Chain C, Structure Of Factor H Domains 19-20 In Complex With
Complement C3d
Length = 133
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 136 YYFLSREHTLEFNEWEGKLEY 156
Y SR HTL W+GKLEY
Sbjct: 107 YRLSSRSHTLRTTCWDGKLEY 127
>pdb|3KXV|A Chain A, Structure Of Complement Factor H Variant Q1139a
Length = 133
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 136 YYFLSREHTLEFNEWEGKLEY 156
Y SR HTL W+GKLEY
Sbjct: 107 YRLSSRSHTLRTTCWDGKLEY 127
>pdb|3KZJ|A Chain A, Structure Of Complement Factor H Variant R1203a
Length = 133
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 136 YYFLSREHTLEFNEWEGKLEY 156
Y SR HTL W+GKLEY
Sbjct: 107 YRLSSRSHTLRTTCWDGKLEY 127
>pdb|1HAQ|A Chain A, Four Models Of Human Factor H Determined By Solution
Scattering Curve-Fitting And Homology Modelling
Length = 1213
Score = 29.3 bits (64), Expect = 3.1, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 136 YYFLSREHTLEFNEWEGKLEY 156
Y SR HTL W+GKLEY
Sbjct: 1187 YRLSSRSHTLRTTCWDGKLEY 1207
>pdb|3GAU|A Chain A, Solution Structure Of Human Complement Factor H In 50 Mm
Nacl Buffer
pdb|3GAV|A Chain A, Solution Structure Of Human Complement Factor H In 137 Mm
Nacl Buffer
pdb|3GAW|A Chain A, Solution Structure Of Human Complement Factor H In 250 Mm
Nacl Buffer
Length = 1213
Score = 29.3 bits (64), Expect = 3.1, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 136 YYFLSREHTLEFNEWEGKLEY 156
Y SR HTL W+GKLEY
Sbjct: 1187 YRLSSRSHTLRTTCWDGKLEY 1207
>pdb|3SW0|X Chain X, Structure Of The C-terminal Region (modules 18-20) Of
Complement Regulator Factor H
Length = 188
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 136 YYFLSREHTLEFNEWEGKLEY 156
Y SR HTL W+GKLEY
Sbjct: 162 YRLSSRSHTLRTTCWDGKLEY 182
>pdb|2QFH|A Chain A, Solution Structure Of The C-Terminal Scr-1620 FRAGMENT OF
Complement Factor H
Length = 333
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 136 YYFLSREHTLEFNEWEGKLEYEYVKNKGVSIFLM 169
Y SR HTL W+GKLEY + + L+
Sbjct: 284 YRLSSRSHTLRTTCWDGKLEYPTCAKRPLEQKLI 317
>pdb|2G7I|A Chain A, Structure Of Human Complement Factor H Carboxyl Terminal
Domains 19- 20: A Basis For Atypical Hemolytic Uremic
Syndrome
Length = 125
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 136 YYFLSREHTLEFNEWEGKLEY 156
Y SR HTL W+GKLEY
Sbjct: 99 YRLSSRSHTLRTTCWDGKLEY 119
>pdb|2BZM|A Chain A, Solution Structure Of The Primary Host Recognition Region
Of Complement Factor H
pdb|3OXU|D Chain D, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|E Chain E, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|F Chain F, Complement Components Factor H Ccp19-20 And C3d In Complex
Length = 129
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 136 YYFLSREHTLEFNEWEGKLEY 156
Y SR HTL W+GKLEY
Sbjct: 103 YRLSSRSHTLRTTCWDGKLEY 123
>pdb|3R62|A Chain A, Structure Of Complement Regulator Factor H Mutant, T1184r.
pdb|3R62|B Chain B, Structure Of Complement Regulator Factor H Mutant, T1184r
Length = 129
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 136 YYFLSREHTLEFNEWEGKLEY 156
Y SR HTL W+GKLEY
Sbjct: 103 YRLSSRSHTLRTTCWDGKLEY 123
>pdb|3RJ3|D Chain D, Complement Components Factor H Ccp19-20 (S1191l Mutant)
And C3d In Complex
pdb|3RJ3|E Chain E, Complement Components Factor H Ccp19-20 (S1191l Mutant)
And C3d In Complex
pdb|3RJ3|F Chain F, Complement Components Factor H Ccp19-20 (S1191l Mutant)
And C3d In Complex
Length = 129
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 136 YYFLSREHTLEFNEWEGKLEY 156
Y SR HTL W+GKLEY
Sbjct: 103 YRLSSRSHTLRTTCWDGKLEY 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,474,682
Number of Sequences: 62578
Number of extensions: 433719
Number of successful extensions: 701
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 690
Number of HSP's gapped (non-prelim): 14
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)