BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022015
         (304 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P76498|YFCO_ECOLI Uncharacterized protein YfcO OS=Escherichia coli (strain K12)
           GN=yfcO PE=4 SV=2
          Length = 273

 Score = 32.7 bits (73), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 10/88 (11%)

Query: 87  YQNQAWMEFHNKSGSEFGGGTLHIKVSDAHSWTCMDLYVFATPYRVTWDYYFLSREHTLE 146
           Y +  W+   N S +  GG T   +  D+H   C  + V   PY V+W+  ++S+   L 
Sbjct: 122 YFSCPWLVIMNDSEASPGGVTY--QGPDSHDTICPSVSV--QPYDVSWNENYVSKSKLLT 177

Query: 147 FNEWEGKLEYEYVKNKGVSIFLMQAGML 174
                G +E      K +S +LM+ G L
Sbjct: 178 LQSTGGVVE------KTLSTYLMKDGKL 199


>sp|Q6FKY3|DIM1_CANGA Dimethyladenosine transferase OS=Candida glabrata (strain ATCC 2001
           / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=DIM1
           PE=3 SV=1
          Length = 317

 Score = 32.7 bits (73), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 145 LEFNEWEGKLEYEYV-KNKGVSIFLMQAGMLGTLEALWDVFPLFTNTGWGENSNIGFLKK 203
           ++FNEW+G L   +V KN+ +S       +L  LE  +  F    N    E  N+  L K
Sbjct: 218 IDFNEWDGLLRIVFVRKNRTISAGFKSTTVLEILEKNYKTFLAINNQSIDETENLQSLIK 277

Query: 204 H 204
            
Sbjct: 278 Q 278


>sp|P33566|LEP4_NEIGO Type 4 prepilin-like proteins leader peptide-processing enzyme
           OS=Neisseria gonorrhoeae GN=pilD PE=3 SV=2
          Length = 286

 Score = 32.7 bits (73), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 241 GGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHENDEVKLTDLL 287
           GGF  L+  V GA AG++++ L  +  KL  G++G  N + KL   L
Sbjct: 172 GGFVPLQSAVLGAVAGYSSLWLLCAVYKLLTGKTGMGNGDFKLIAAL 218


>sp|Q24VW5|GLGC_DESHY Glucose-1-phosphate adenylyltransferase OS=Desulfitobacterium
           hafniense (strain Y51) GN=glgC PE=3 SV=1
          Length = 398

 Score = 32.0 bits (71), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 55  LNALNGAADLLPAFVGSASDQTGTVEWKGACFYQNQAWMEFHN 97
           LN LNG   +LP FVG A  Q    +      YQN  ++ F+N
Sbjct: 78  LNCLNGGIHILPPFVGEA--QGSWYKGTANAIYQNMDFINFYN 118


>sp|B8G1G5|GLGC_DESHD Glucose-1-phosphate adenylyltransferase OS=Desulfitobacterium
           hafniense (strain DCB-2 / DSM 10664) GN=glgC PE=3 SV=1
          Length = 398

 Score = 32.0 bits (71), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 55  LNALNGAADLLPAFVGSASDQTGTVEWKGACFYQNQAWMEFHN 97
           LN LNG   +LP FVG A  Q    +      YQN  ++ F+N
Sbjct: 78  LNCLNGGIHILPPFVGEA--QGSWYKGTANAIYQNMDFINFYN 118


>sp|P31600|NFRA_ECOLI Bacteriophage N4 adsorption protein A OS=Escherichia coli (strain
           K12) GN=nfrA PE=4 SV=1
          Length = 990

 Score = 31.2 bits (69), Expect = 9.0,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 27/159 (16%)

Query: 55  LNALNGAADLLPAFVGSASDQTGTVEWKGACFYQNQAWMEFHNKSGSEFGGGTLHIKVSD 114
           LN  NGA+D              T+    A F+    + +  + +GS +    L++   D
Sbjct: 843 LNGQNGASD--------------TMLRASASFFNGGKYSDEWHPNGSGWFAQNLYL---D 885

Query: 115 AHSWTCMDLYVFATPYRVTWDYYFLSREHTLEFNEWEGKLEYEYVKNKGVSIFLMQAGML 174
           A  +   D+  +   YRV+W +  ++   T+E         Y +V++ G      Q   L
Sbjct: 886 AAQYIRQDIQAWTADYRVSW-HQKVANGQTIE--------PYAHVQDNGYRDKGTQGAQL 936

Query: 175 GTLEALWDVFPLFTN-TGWGENSNIGFLKKHMGASFEQR 212
           G +   W+++   T+   W    ++G   +H   +  QR
Sbjct: 937 GGVGVRWNIWTGETHYDAWPHKVSLGVEYQHTFKAINQR 975


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,614,164
Number of Sequences: 539616
Number of extensions: 5420368
Number of successful extensions: 10892
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 10889
Number of HSP's gapped (non-prelim): 8
length of query: 304
length of database: 191,569,459
effective HSP length: 117
effective length of query: 187
effective length of database: 128,434,387
effective search space: 24017230369
effective search space used: 24017230369
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)