Query 022015
Match_columns 304
No_of_seqs 50 out of 52
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 12:43:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022015.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022015hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kw0_A Cysteine peptidase; str 96.6 0.0032 1.1E-07 55.5 6.5 50 222-276 37-86 (214)
2 2if6_A Hypothetical protein YI 96.5 0.0036 1.2E-07 53.0 5.7 50 221-275 1-50 (186)
3 4h4j_A Hypothetical protein; P 39.9 37 0.0013 30.6 5.2 50 222-285 168-217 (240)
4 2jyx_A Lipoprotein SPR; soluti 26.4 58 0.002 26.1 3.7 38 219-276 62-99 (136)
5 2p1g_A Putative xylanase; stru 23.4 95 0.0032 28.4 4.9 43 223-279 170-212 (249)
6 3jxo_A TRKA-N domain protein; 21.7 85 0.0029 22.2 3.5 28 222-252 58-85 (86)
7 1ass_A Thermosome; chaperonin, 20.8 1.1E+02 0.0038 25.3 4.4 77 155-236 64-140 (159)
8 3c0d_A Putative nitrite reduct 20.1 1.1E+02 0.0036 23.6 4.0 41 216-275 6-46 (119)
9 2zyl_A Possible oxidoreductase 19.4 1E+02 0.0035 28.6 4.4 40 216-274 26-65 (386)
10 2k1g_A Lipoprotein SPR; soluti 18.6 51 0.0017 27.0 1.9 33 219-269 62-94 (135)
No 1
>3kw0_A Cysteine peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: LYS; 2.50A {Bacillus cereus}
Probab=96.63 E-value=0.0032 Score=55.48 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=44.4
Q ss_pred CCcCCCCCEEEEEeecccCCchhhHHHhhcCcCcceeEEEEecCCCcEEEEeccC
Q 022015 222 VEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGH 276 (304)
Q Consensus 222 ~~DIhSGDFLaVsrirgrwdGfdtlikW~TGA~aGHTav~Lrd~dGeLwV~ES~~ 276 (304)
.+++++||.|.+. |+ +.++.+|+++|++..+|.+|.+++ +++.||+|+..
T Consensus 37 ~~~l~~GDlif~~---~~-~~~s~~I~~~T~s~~sHvgI~~~~-~~~~~vieA~~ 86 (214)
T 3kw0_A 37 INVLKTGDIFLCS---GN-YLVSKLIKKVSESMFSHTGIIVKW-GEHTLIMESVE 86 (214)
T ss_dssp TTTCCTTCEEEEE---EC-SHHHHHHHHHTTSSCCEEEEEEEE-TTEEEEEEEET
T ss_pred HhhCCCCCEEEEe---CC-CcHHHHHHHhcCCCCcEEEEEEec-CCceEEEEecC
Confidence 4799999999985 44 889999999999999999999986 78999999953
No 2
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21
Probab=96.49 E-value=0.0036 Score=52.97 Aligned_cols=50 Identities=18% Similarity=0.148 Sum_probs=41.9
Q ss_pred CCCcCCCCCEEEEEeecccCCchhhHHHhhcCcCcceeEEEEecCCCcEEEEecc
Q 022015 221 TVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESG 275 (304)
Q Consensus 221 ~~~DIhSGDFLaVsrirgrwdGfdtlikW~TGA~aGHTav~Lrd~dGeLwV~ES~ 275 (304)
+++++|+||.|... |+ ..+..+|+.+|++..+|.++.+.+ +|+.+|+|+.
T Consensus 1 ~~~~l~~GDlvf~~---~~-~~~s~~I~~~t~~~~sHvgI~~~~-~~~~~viea~ 50 (186)
T 2if6_A 1 SLWQPQTGDIIFQI---SR-SSQSKAIQLATHSDYSHTGMLVMR-NKKPYVFEAV 50 (186)
T ss_dssp --CCCCTTCEEEEC---CC-STTHHHHHHHHTSSCCEEEEEEEE-TTEEEEEEES
T ss_pred CcccCCCCCEEEEE---cC-CchHHHHHHHcCCCCceEEEEEEe-CCcEEEEEeC
Confidence 46789999998763 44 678999999999999999999975 7889999996
No 3
>4h4j_A Hypothetical protein; PF07313 family protein, DUF 1460, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.15A {Bacteroides uniformis}
Probab=39.90 E-value=37 Score=30.65 Aligned_cols=50 Identities=18% Similarity=0.357 Sum_probs=36.2
Q ss_pred CCcCCCCCEEEEEeecccCCchhhHHHhhcCcCcceeEEEEecCCCcEEEEeccCccccccccc
Q 022015 222 VEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHENDEVKLTD 285 (304)
Q Consensus 222 ~~DIhSGDFLaVsrirgrwdGfdtlikW~TGA~aGHTav~Lrd~dGeLwV~ES~~en~~~~~~~ 285 (304)
.+.||+||.++|.+= ..|--..|.-++.|. +|+||...--....|..+.|
T Consensus 168 ~~~l~~GDiIai~t~-------------~~GLDvsH~Giai~~-~~~l~l~hASS~~~~vvv~d 217 (240)
T 4h4j_A 168 LPWIKDGDIIAITTN-------------TPGLDVAHMGIAFYA-DNKLLLVHASSTDKKVVVSK 217 (240)
T ss_dssp CTTSCTTCEEEEEEC-------------STTCSEEEEEEEEEE-TTEEEEEEEETTTTEEEECS
T ss_pred HhhCCCCcEEEEEec-------------CCCceEEEEEEEEEE-CCeEEEEEcCCCCCceEEcC
Confidence 367999999999864 135567899999985 88899988544444444433
No 4
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=26.37 E-value=58 Score=26.13 Aligned_cols=38 Identities=13% Similarity=0.366 Sum_probs=26.0
Q ss_pred cCCCCcCCCCCEEEEEeecccCCchhhHHHhhcCcCcceeEEEEecCCCcEEEEeccC
Q 022015 219 NVTVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGH 276 (304)
Q Consensus 219 ~i~~~DIhSGDFLaVsrirgrwdGfdtlikW~TGA~aGHTav~Lrd~dGeLwV~ES~~ 276 (304)
.++.+++++||.|... +|...+|-.+.+- +|+ ++++..
T Consensus 62 ~v~~~~l~pGDLvff~----------------~~~~~~HVgIy~G--~g~--~IHa~~ 99 (136)
T 2jyx_A 62 SVSRSNLRTGDLVLFR----------------AGSTGRHVGIYIG--NNQ--FVHAST 99 (136)
T ss_dssp ECCTTTCCTTEEEEEE----------------CSSSSEEEEEEEE--TTE--EEEEET
T ss_pred EcchHhCCCCCEEEEC----------------CCCCCCEEEEEEc--CCE--EEEECC
Confidence 4567899999988764 2334789999992 665 444443
No 5
>2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Bacteroides fragilis}
Probab=23.39 E-value=95 Score=28.42 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=33.2
Q ss_pred CcCCCCCEEEEEeecccCCchhhHHHhhcCcCcceeEEEEecCCCcEEEEeccCccc
Q 022015 223 EEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHEND 279 (304)
Q Consensus 223 ~DIhSGDFLaVsrirgrwdGfdtlikW~TGA~aGHTav~Lrd~dGeLwV~ES~~en~ 279 (304)
+.|++||.++|..=+ .|=-..|+-++.|. +|+++..-.-....
T Consensus 170 ~~l~~GDiI~i~t~~-------------~GLDVsHvGi~i~~-~~~l~f~hASs~~~ 212 (249)
T 2p1g_A 170 PWIKNGDIIALTTNT-------------PGLDVSHMGIAIYI-KGQLHLLHASSKEG 212 (249)
T ss_dssp TTSCTTCEEEEEECS-------------TTCSEEEEEEEEEE-TTEEEEEEEETTTT
T ss_pred hcCCCCCEEEEEeCC-------------CCCceeEEEEEEEE-CCeEEEEEcCCCCC
Confidence 779999999998751 45567899999997 89999876544433
No 6
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=21.70 E-value=85 Score=22.25 Aligned_cols=28 Identities=39% Similarity=0.262 Sum_probs=20.8
Q ss_pred CCcCCCCCEEEEEeecccCCchhhHHHhhcC
Q 022015 222 VEEIHSGDFLAVSKIRGRWGGFETLEKWVTG 252 (304)
Q Consensus 222 ~~DIhSGDFLaVsrirgrwdGfdtlikW~TG 252 (304)
..-|++||.|.|. |+.+.++.+.++.+|
T Consensus 58 ~~~l~~GD~l~v~---g~~~~~~~~~~~~~~ 85 (86)
T 3jxo_A 58 DTEILSGDKLYVI---VSAEAKETVEETLLG 85 (86)
T ss_dssp TCBCCTTCEEEEE---EETTTHHHHHHHHC-
T ss_pred CCEECCCCEEEEE---ECHHHHHHHHHHHcC
Confidence 5679999999876 555778888777654
No 7
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=20.82 E-value=1.1e+02 Score=25.30 Aligned_cols=77 Identities=18% Similarity=0.206 Sum_probs=58.1
Q ss_pred hhHHhhhcCeEEEEechhhHhHHHHHHhhccccCCCcccccccHHHHHHhcCCceeecCCCccccCCCCcCCCCCEEEEE
Q 022015 155 EYEYVKNKGVSIFLMQAGMLGTLEALWDVFPLFTNTGWGENSNIGFLKKHMGASFEQRPEPWFTNVTVEEIHSGDFLAVS 234 (304)
Q Consensus 155 e~e~Ik~~Gv~IFlm~~G~~~TL~sL~dtlpLFsnt~WGe~~Nl~FLk~~mG~~fe~R~~p~~v~i~~~DIhSGDFLaVs 234 (304)
..+.|++.|..|.....|+.+..+.++.=.+++.= .+-...+++.|-+.+|++...|. .+++++++-.-|.+-.-
T Consensus 64 ~v~kI~~~g~nVVl~~k~I~d~a~~~l~k~gI~~v-~~v~~~dleria~atGa~iv~~~----~~l~~~~LG~~~~v~e~ 138 (159)
T 1ass_A 64 MVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAV-RRVKKSDMEKLAKATGAKIVTDL----DDLTPSVLGEAETVEER 138 (159)
T ss_dssp HHHHHHHTTCSEEEESSCBCHHHHHHHHHTTCEEE-CSCCHHHHHHHHHHHTCCCBSST----TSCCTTSCEEEEEEEEE
T ss_pred HhhhhhhCCCeEEEECCccCHHHHHHHHHCCCEEE-ccCCHHHHHHHHHHhCCeeeCcc----ccCCcccCccceEEEEE
Confidence 34567889999999999999999888876654431 23467899999999999988776 35677777666666666
Q ss_pred ee
Q 022015 235 KI 236 (304)
Q Consensus 235 ri 236 (304)
++
T Consensus 139 ~i 140 (159)
T 1ass_A 139 KI 140 (159)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 8
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=20.12 E-value=1.1e+02 Score=23.62 Aligned_cols=41 Identities=7% Similarity=-0.010 Sum_probs=29.2
Q ss_pred ccccCCCCcCCCCCEEEEEeecccCCchhhHHHhhcCcCcceeEEEEecCCCcEEEEecc
Q 022015 216 WFTNVTVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESG 275 (304)
Q Consensus 216 ~~v~i~~~DIhSGDFLaVsrirgrwdGfdtlikW~TGA~aGHTav~Lrd~dGeLwV~ES~ 275 (304)
|..--..+||.+|+...+. + .|...+..|+.||++|+.+..
T Consensus 6 w~~v~~~~el~~g~~~~~~-~------------------~g~~v~v~r~~~G~~~A~~n~ 46 (119)
T 3c0d_A 6 KVKLCQLDDLMPFIGATVL-I------------------EGERVALFYIPDSGVYAVQDW 46 (119)
T ss_dssp EEEEEEGGGSCBTCCEEEE-E------------------TTEEEEEEEETTTEEEEEESE
T ss_pred cEEEEEHHHCCCCCeEEEE-E------------------CCeEEEEEEecCCeEEEEeCC
Confidence 5333356888889987664 4 245677888889999999854
No 9
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=19.42 E-value=1e+02 Score=28.62 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=30.3
Q ss_pred ccccCCCCcCCCCCEEEEEeecccCCchhhHHHhhcCcCcceeEEEEecCCCcEEEEec
Q 022015 216 WFTNVTVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGES 274 (304)
Q Consensus 216 ~~v~i~~~DIhSGDFLaVsrirgrwdGfdtlikW~TGA~aGHTav~Lrd~dGeLwV~ES 274 (304)
|..--..+||..||.+.+. + .|...+..|+.||++++.+-
T Consensus 26 W~~v~~~~el~~g~~~~~~-~------------------~g~~vvl~R~~~G~v~a~~n 65 (386)
T 2zyl_A 26 WHCLGVAKDYLEGKPHGVE-A------------------FGTKLVVFADSHGDLKVLDG 65 (386)
T ss_dssp EEEEEEGGGGCSSSCEEEE-E------------------TTEEEEEEECTTSCEEEEES
T ss_pred eEEEEEHHHCCCCCeEEEE-E------------------CCeEEEEEECCCCCEEEEcC
Confidence 5333346888889988765 3 36788999999999999875
No 10
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=18.58 E-value=51 Score=27.02 Aligned_cols=33 Identities=15% Similarity=0.469 Sum_probs=23.6
Q ss_pred cCCCCcCCCCCEEEEEeecccCCchhhHHHhhcCcCcceeEEEEecCCCcE
Q 022015 219 NVTVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKL 269 (304)
Q Consensus 219 ~i~~~DIhSGDFLaVsrirgrwdGfdtlikW~TGA~aGHTav~Lrd~dGeL 269 (304)
.++.+++++||++--. +|+...|-++.+ . +|++
T Consensus 62 ~V~~~~l~pGDLvFf~----------------~~~~~~HVGIyi-G-~g~~ 94 (135)
T 2k1g_A 62 SVSRSNLRTGDLVLFR----------------AGSTGRHVGIYI-G-NNQF 94 (135)
T ss_dssp EECGGGCCTTEEEEEE----------------ETTTEEEEEEEE-E-TTEE
T ss_pred EecHHHccCCcEEEEC----------------CCCCCeEEEEEe-c-CCEE
Confidence 4677899999987642 244567999998 3 6764
Done!