BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022016
         (304 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IC8|A Chain A, The Crystal Structure Of A Gst-Like Protein From
           Pseudomonas Syringae To 2.4a
 pdb|3IC8|B Chain B, The Crystal Structure Of A Gst-Like Protein From
           Pseudomonas Syringae To 2.4a
 pdb|3IC8|C Chain C, The Crystal Structure Of A Gst-Like Protein From
           Pseudomonas Syringae To 2.4a
 pdb|3IC8|D Chain D, The Crystal Structure Of A Gst-Like Protein From
           Pseudomonas Syringae To 2.4a
          Length = 310

 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 174 SGGENWLLGCLFLFASACCWSLWLILQVPVSASY-PDHLSLSAWM 217
           S G ++L G   +   +   +LW + Q PV+A +  D+ S+S W+
Sbjct: 168 SHGGDFLFGAPSIADFSVAHTLWFLKQTPVTAPFVDDYPSVSVWL 212


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.139    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,702,220
Number of Sequences: 62578
Number of extensions: 277415
Number of successful extensions: 735
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 735
Number of HSP's gapped (non-prelim): 1
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)