Query 022016
Match_columns 304
No_of_seqs 122 out of 1751
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 07:23:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 2.1E-34 4.5E-39 262.9 23.9 292 4-303 9-311 (358)
2 PRK11272 putative DMT superfam 100.0 1.2E-31 2.5E-36 240.1 22.4 266 1-302 1-267 (292)
3 TIGR00950 2A78 Carboxylate/Ami 100.0 3.8E-30 8.2E-35 226.4 20.6 245 20-302 1-246 (260)
4 PRK11453 O-acetylserine/cystei 100.0 7.7E-30 1.7E-34 229.1 22.4 258 10-302 6-269 (299)
5 PRK15430 putative chlorampheni 100.0 2.8E-30 6.2E-35 231.6 19.3 263 1-302 1-267 (296)
6 PRK11689 aromatic amino acid e 100.0 1.5E-29 3.3E-34 226.8 19.3 264 6-302 2-269 (295)
7 PRK10532 threonine and homoser 100.0 2.1E-28 4.6E-33 219.1 21.5 257 3-302 7-263 (293)
8 TIGR00688 rarD rarD protein. T 100.0 4E-28 8.7E-33 213.3 19.4 249 8-295 2-255 (256)
9 TIGR03340 phn_DUF6 phosphonate 99.9 3.4E-26 7.3E-31 203.8 19.3 259 10-303 3-266 (281)
10 TIGR00817 tpt Tpt phosphate/ph 99.9 1.8E-25 3.9E-30 201.2 20.1 258 15-303 9-276 (302)
11 PTZ00343 triose or hexose phos 99.9 3E-23 6.4E-28 190.0 21.3 266 6-303 47-331 (350)
12 COG0697 RhaT Permeases of the 99.9 2.4E-22 5.2E-27 178.8 21.8 265 4-302 3-269 (292)
13 PF06027 DUF914: Eukaryotic pr 99.9 4.2E-21 9.1E-26 172.3 21.6 275 6-303 11-288 (334)
14 COG2962 RarD Predicted permeas 99.9 3.5E-20 7.5E-25 159.2 18.9 261 4-302 3-265 (293)
15 KOG4510 Permease of the drug/m 99.9 5.3E-23 1.2E-27 173.2 1.4 276 3-303 33-308 (346)
16 TIGR00776 RhaT RhaT L-rhamnose 99.9 4.4E-20 9.5E-25 164.9 18.3 256 9-303 2-267 (290)
17 COG5006 rhtA Threonine/homoser 99.8 1.4E-19 3.1E-24 151.6 19.2 253 9-303 13-265 (292)
18 COG2510 Predicted membrane pro 99.7 3.1E-16 6.8E-21 118.3 11.6 136 8-151 3-138 (140)
19 KOG2765 Predicted membrane pro 99.6 8.5E-16 1.8E-20 135.8 9.0 209 74-302 160-372 (416)
20 PF00892 EamA: EamA-like trans 99.6 3.3E-15 7.2E-20 116.1 9.5 125 18-151 1-125 (126)
21 PF08449 UAA: UAA transporter 99.6 1.4E-13 3E-18 123.9 19.1 261 20-303 12-280 (303)
22 TIGR00950 2A78 Carboxylate/Ami 99.4 1.3E-11 2.7E-16 108.5 15.7 133 5-147 125-259 (260)
23 PF04142 Nuc_sug_transp: Nucle 99.3 9.8E-11 2.1E-15 101.8 15.0 218 69-302 13-235 (244)
24 PF13536 EmrE: Multidrug resis 99.2 3.1E-11 6.8E-16 92.6 8.1 104 42-152 2-106 (113)
25 PRK10532 threonine and homoser 99.2 8.1E-10 1.8E-14 99.0 17.2 136 6-152 146-281 (293)
26 KOG1441 Glucose-6-phosphate/ph 99.2 8.9E-12 1.9E-16 111.0 4.4 257 16-302 25-289 (316)
27 PRK11272 putative DMT superfam 99.2 6.4E-10 1.4E-14 99.6 15.2 138 6-152 148-285 (292)
28 KOG2766 Predicted membrane pro 99.2 4.8E-12 1E-16 106.7 0.1 254 17-302 27-281 (336)
29 COG2510 Predicted membrane pro 99.1 1.9E-10 4E-15 87.2 8.0 119 182-303 4-122 (140)
30 PLN00411 nodulin MtN21 family 99.1 3.5E-09 7.6E-14 97.2 16.2 136 8-152 189-328 (358)
31 PF00892 EamA: EamA-like trans 99.1 7.8E-11 1.7E-15 91.3 3.3 108 191-302 1-108 (126)
32 PRK11689 aromatic amino acid e 99.1 4E-09 8.7E-14 94.6 14.7 133 7-152 155-287 (295)
33 KOG1444 Nucleotide-sugar trans 99.0 3.8E-08 8.1E-13 86.4 18.9 251 22-303 26-283 (314)
34 PRK11453 O-acetylserine/cystei 99.0 2.3E-08 5E-13 89.9 16.0 137 7-151 142-286 (299)
35 KOG2234 Predicted UDP-galactos 99.0 3.9E-07 8.4E-12 81.3 22.9 273 8-302 15-304 (345)
36 TIGR03340 phn_DUF6 phosphonate 98.9 9.9E-09 2.2E-13 91.4 11.8 136 6-150 142-281 (281)
37 KOG1580 UDP-galactose transpor 98.9 8.7E-09 1.9E-13 86.3 10.2 240 37-302 53-295 (337)
38 TIGR00817 tpt Tpt phosphate/ph 98.9 1.7E-08 3.8E-13 90.8 11.3 140 6-151 143-292 (302)
39 KOG1443 Predicted integral mem 98.9 1.5E-07 3.4E-12 81.8 16.3 237 37-302 45-297 (349)
40 PF06800 Sugar_transport: Suga 98.9 8.3E-08 1.8E-12 83.6 14.6 234 36-300 11-247 (269)
41 PF03151 TPT: Triose-phosphate 98.8 2E-07 4.3E-12 75.1 13.7 134 9-149 1-150 (153)
42 KOG1581 UDP-galactose transpor 98.8 1E-06 2.2E-11 76.8 18.6 243 36-302 50-295 (327)
43 PTZ00343 triose or hexose phos 98.7 6.5E-07 1.4E-11 82.3 15.5 140 6-151 192-347 (350)
44 COG0697 RhaT Permeases of the 98.7 9.7E-07 2.1E-11 78.2 15.5 133 7-151 153-286 (292)
45 TIGR00776 RhaT RhaT L-rhamnose 98.7 4.5E-07 9.7E-12 81.2 13.1 129 6-151 150-287 (290)
46 PRK15430 putative chlorampheni 98.6 1E-06 2.2E-11 79.1 14.2 133 11-152 152-285 (296)
47 PRK13499 rhamnose-proton sympo 98.6 7.4E-06 1.6E-10 74.3 18.9 280 5-301 4-316 (345)
48 PRK15051 4-amino-4-deoxy-L-ara 98.5 6.9E-07 1.5E-11 68.1 9.3 70 76-151 39-108 (111)
49 PF06027 DUF914: Eukaryotic pr 98.5 3E-06 6.5E-11 76.7 14.8 142 4-154 164-307 (334)
50 TIGR00688 rarD rarD protein. T 98.5 2.1E-07 4.5E-12 81.7 5.2 119 181-302 2-124 (256)
51 PRK02971 4-amino-4-deoxy-L-ara 98.4 7E-06 1.5E-10 64.1 12.5 118 8-151 2-121 (129)
52 KOG4314 Predicted carbohydrate 98.4 6.3E-07 1.4E-11 73.3 6.7 182 85-293 64-249 (290)
53 COG5006 rhtA Threonine/homoser 98.4 5.7E-06 1.2E-10 70.4 12.0 136 6-151 146-281 (292)
54 PF05653 Mg_trans_NIPA: Magnes 98.4 3.5E-06 7.6E-11 75.5 10.6 119 5-153 4-123 (300)
55 KOG1442 GDP-fucose transporter 98.2 2.8E-05 6.1E-10 67.0 12.6 240 36-302 60-309 (347)
56 COG5070 VRG4 Nucleotide-sugar 98.2 1.8E-05 3.9E-10 66.1 10.9 252 25-303 23-279 (309)
57 KOG3912 Predicted integral mem 98.2 0.0001 2.2E-09 63.8 15.4 195 17-230 12-226 (372)
58 TIGR00803 nst UDP-galactose tr 98.1 4.8E-05 1E-09 65.3 11.0 195 100-302 4-206 (222)
59 PF03151 TPT: Triose-phosphate 98.0 1E-05 2.2E-10 65.0 5.6 120 182-302 1-135 (153)
60 COG4975 GlcU Putative glucose 97.9 1.1E-06 2.3E-11 74.4 -2.9 258 9-300 3-261 (288)
61 PF06800 Sugar_transport: Suga 97.8 0.00038 8.3E-09 60.9 12.0 133 5-148 135-267 (269)
62 PF08449 UAA: UAA transporter 97.7 0.00079 1.7E-08 60.6 13.4 137 9-152 155-297 (303)
63 PF04657 DUF606: Protein of un 97.6 0.0015 3.3E-08 51.7 11.9 130 10-149 3-138 (138)
64 COG2962 RarD Predicted permeas 97.5 0.0048 1E-07 54.1 13.9 130 13-152 153-283 (293)
65 PRK13499 rhamnose-proton sympo 97.4 0.0075 1.6E-07 54.9 15.4 146 5-152 171-341 (345)
66 KOG2922 Uncharacterized conser 97.4 0.00012 2.7E-09 64.6 3.3 251 5-299 18-279 (335)
67 KOG1582 UDP-galactose transpor 97.4 0.00086 1.9E-08 57.9 8.1 206 71-301 104-313 (367)
68 PF13536 EmrE: Multidrug resis 97.3 7.2E-05 1.6E-09 57.1 0.8 86 216-302 3-88 (113)
69 PRK10452 multidrug efflux syst 97.3 0.0011 2.4E-08 50.9 7.2 69 78-152 34-103 (120)
70 PRK02971 4-amino-4-deoxy-L-ara 97.3 0.00023 5E-09 55.6 3.1 102 181-303 2-105 (129)
71 KOG1441 Glucose-6-phosphate/ph 97.3 0.0011 2.4E-08 59.5 7.9 138 6-151 161-306 (316)
72 PRK09541 emrE multidrug efflux 97.2 0.0016 3.6E-08 49.3 7.5 68 79-152 35-103 (110)
73 PRK10650 multidrug efflux syst 97.2 0.0067 1.5E-07 45.8 10.3 65 81-151 42-107 (109)
74 KOG2765 Predicted membrane pro 97.0 0.0071 1.5E-07 54.7 10.0 142 5-152 244-390 (416)
75 PF10639 UPF0546: Uncharacteri 97.0 0.0037 8E-08 47.4 7.0 110 14-150 2-112 (113)
76 PRK11431 multidrug efflux syst 96.9 0.0054 1.2E-07 46.0 7.5 65 81-151 36-101 (105)
77 COG2076 EmrE Membrane transpor 96.9 0.0042 9.1E-08 46.3 6.7 68 79-152 35-103 (106)
78 KOG1583 UDP-N-acetylglucosamin 96.9 0.0038 8.3E-08 54.2 7.1 221 66-302 60-296 (330)
79 KOG4510 Permease of the drug/m 96.8 0.00097 2.1E-08 57.5 2.8 137 6-152 189-325 (346)
80 PRK15051 4-amino-4-deoxy-L-ara 96.7 0.00048 1E-08 52.4 0.3 51 253-303 42-92 (111)
81 PF00893 Multi_Drug_Res: Small 96.6 0.0067 1.5E-07 44.5 5.9 57 80-142 35-92 (93)
82 PF07857 DUF1632: CEO family ( 96.5 0.058 1.3E-06 47.1 12.0 187 9-207 1-209 (254)
83 COG3238 Uncharacterized protei 96.1 0.14 3E-06 40.9 11.2 137 6-150 3-144 (150)
84 KOG1581 UDP-galactose transpor 95.8 0.12 2.6E-06 45.7 10.3 141 5-152 169-313 (327)
85 TIGR00803 nst UDP-galactose tr 95.6 0.053 1.1E-06 46.4 7.7 59 85-149 163-221 (222)
86 KOG1580 UDP-galactose transpor 94.8 0.33 7.1E-06 41.5 9.6 137 9-152 173-313 (337)
87 KOG1444 Nucleotide-sugar trans 93.6 1 2.2E-05 40.3 10.7 139 6-152 155-300 (314)
88 PF05653 Mg_trans_NIPA: Magnes 92.4 0.11 2.4E-06 46.7 3.0 102 177-302 3-104 (300)
89 PF04142 Nuc_sug_transp: Nucle 92.4 3.2 6.9E-05 36.1 12.1 129 6-141 112-242 (244)
90 PF04657 DUF606: Protein of un 92.2 0.17 3.7E-06 40.0 3.5 108 183-294 3-111 (138)
91 PF06379 RhaT: L-rhamnose-prot 91.4 7.4 0.00016 35.4 13.3 277 5-298 4-312 (344)
92 PF00893 Multi_Drug_Res: Small 91.4 0.087 1.9E-06 38.6 1.0 48 257-304 38-86 (93)
93 KOG1443 Predicted integral mem 91.1 6.4 0.00014 35.2 12.3 138 6-150 162-313 (349)
94 KOG2766 Predicted membrane pro 87.8 0.89 1.9E-05 39.5 4.4 137 4-152 162-299 (336)
95 PRK10650 multidrug efflux syst 87.3 0.35 7.6E-06 36.5 1.6 47 257-303 44-91 (109)
96 COG5070 VRG4 Nucleotide-sugar 86.0 4.4 9.5E-05 34.6 7.5 125 21-152 168-296 (309)
97 COG3238 Uncharacterized protei 84.7 3.6 7.7E-05 32.9 6.2 113 180-295 4-117 (150)
98 COG4975 GlcU Putative glucose 84.3 0.85 1.8E-05 39.4 2.6 79 70-151 206-284 (288)
99 KOG1582 UDP-galactose transpor 83.3 9.6 0.00021 33.6 8.6 140 6-152 188-332 (367)
100 PRK09541 emrE multidrug efflux 82.4 0.56 1.2E-05 35.5 0.7 47 257-303 39-86 (110)
101 PRK10452 multidrug efflux syst 80.9 0.64 1.4E-05 35.7 0.6 50 254-303 36-86 (120)
102 PRK11431 multidrug efflux syst 77.9 1.1 2.4E-05 33.6 1.0 47 257-303 38-85 (105)
103 KOG4831 Unnamed protein [Funct 76.8 26 0.00057 26.1 7.8 118 11-151 6-124 (125)
104 COG2076 EmrE Membrane transpor 71.1 0.61 1.3E-05 34.9 -1.8 46 258-303 40-86 (106)
105 KOG3912 Predicted integral mem 68.6 46 0.001 29.6 8.8 143 3-151 171-333 (372)
106 PF04342 DUF486: Protein of un 67.6 40 0.00087 25.1 7.1 32 113-150 75-106 (108)
107 KOG1583 UDP-N-acetylglucosamin 67.2 90 0.0019 27.8 10.3 138 7-152 163-314 (330)
108 PF02694 UPF0060: Uncharacteri 67.0 6.6 0.00014 29.3 2.9 38 109-152 66-103 (107)
109 PRK02237 hypothetical protein; 66.7 8.5 0.00018 28.8 3.4 38 109-152 68-105 (109)
110 PF07698 7TM-7TMR_HD: 7TM rece 60.8 94 0.002 25.6 14.5 26 102-127 59-85 (194)
111 KOG1442 GDP-fucose transporter 58.4 20 0.00044 31.7 4.8 140 6-152 183-327 (347)
112 COG4657 RnfA Predicted NADH:ub 55.6 86 0.0019 25.4 7.5 86 117-229 88-185 (193)
113 PF10754 DUF2569: Protein of u 54.6 80 0.0017 25.1 7.5 32 176-207 116-147 (149)
114 PF05297 Herpes_LMP1: Herpesvi 48.2 6 0.00013 34.9 0.0 32 95-126 44-76 (381)
115 COG1742 Uncharacterized conser 43.5 20 0.00043 26.6 2.1 38 109-152 67-104 (109)
116 PF13127 DUF3955: Protein of u 39.2 90 0.0019 20.9 4.6 39 3-41 1-41 (63)
117 PF07857 DUF1632: CEO family ( 37.8 1.1E+02 0.0024 26.8 6.2 55 4-58 179-244 (254)
118 KOG4320 Uncharacterized conser 37.6 2.7E+02 0.0059 24.2 8.3 47 177-224 117-164 (253)
119 PF08802 CytB6-F_Fe-S: Cytochr 37.6 63 0.0014 19.4 3.3 35 66-100 4-38 (39)
120 COG3086 RseC Positive regulato 36.4 48 0.001 26.3 3.3 48 95-149 69-116 (150)
121 KOG2234 Predicted UDP-galactos 35.6 3.6E+02 0.0077 24.8 13.1 136 4-151 179-321 (345)
122 PRK06638 NADH:ubiquinone oxido 33.6 2.8E+02 0.0062 23.1 11.2 52 4-58 26-77 (198)
123 KOG2922 Uncharacterized conser 30.1 1.2E+02 0.0026 27.5 5.3 81 70-151 224-305 (335)
124 PF10639 UPF0546: Uncharacteri 30.1 1.3E+02 0.0028 22.8 4.7 40 262-301 55-95 (113)
125 PRK15462 dipeptide/tripeptide 27.8 5.7E+02 0.012 24.8 10.1 49 103-151 310-361 (493)
126 PRK11056 hypothetical protein; 27.1 2.9E+02 0.0062 21.1 9.6 49 69-127 8-56 (120)
127 PF03595 SLAC1: Voltage-depend 26.8 2.2E+02 0.0048 25.5 6.7 76 136-228 6-89 (330)
128 COG2246 Predicted membrane pro 26.7 3.1E+02 0.0068 21.4 9.2 58 68-129 8-67 (139)
129 PF11381 DUF3185: Protein of u 24.2 1.7E+02 0.0038 19.3 3.9 17 136-152 1-17 (59)
130 PF04550 Phage_holin_2: Phage 23.4 2.9E+02 0.0063 19.9 6.4 31 121-151 25-55 (89)
131 PRK10862 SoxR reducing system 23.1 92 0.002 25.0 3.0 26 97-122 71-96 (154)
132 PF13347 MFS_2: MFS/sugar tran 22.9 3.3E+02 0.0071 25.2 7.3 62 90-151 26-91 (428)
133 PF11361 DUF3159: Protein of u 22.8 2.7E+02 0.0058 23.2 5.8 74 102-201 28-101 (187)
134 PF06570 DUF1129: Protein of u 22.8 4.5E+02 0.0098 21.9 9.1 108 76-203 87-201 (206)
135 PF11139 DUF2910: Protein of u 21.2 4.9E+02 0.011 21.7 11.9 66 86-151 127-210 (214)
136 PF04279 IspA: Intracellular s 20.4 4.8E+02 0.01 21.3 8.5 57 88-151 10-67 (176)
137 COG4854 Predicted membrane pro 20.4 2E+02 0.0044 21.7 4.0 21 132-152 70-90 (126)
138 PRK12456 Na(+)-translocating N 20.2 4.4E+02 0.0094 22.2 6.5 29 178-206 136-164 (199)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=2.1e-34 Score=262.91 Aligned_cols=292 Identities=25% Similarity=0.470 Sum_probs=231.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHH
Q 022016 4 LRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLG 83 (304)
Q Consensus 4 ~~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 83 (304)
+++.++++.++...+.++...++.|...+.|++|..+.++|+.+++++++++..+++|+++.++.+++++..+.+.|+++
T Consensus 9 ~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g 88 (358)
T PLN00411 9 RREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG 88 (358)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999987765442221445688889999999998
Q ss_pred HHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHH------hcccccccccccchhhhHHHHHHHhHhhhhhccCCc
Q 022016 84 VTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIV------GLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPK 157 (304)
Q Consensus 84 ~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~------~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~ 157 (304)
+..+.+++.|++++++++++++.++.|+++.++++++ +|||++++ +++|+++++.|+.++...+++.
T Consensus 89 -~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~~ 161 (358)
T PLN00411 89 -SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGPR 161 (358)
T ss_pred -HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHH------HHHHHHHHHHHHHHHHHccCcc
Confidence 7788899999999999999999999999999999999 58888888 9999999999999988533332
Q ss_pred cccccCC---cccccc-ccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcC
Q 022016 158 LLNTEFL---PEKSFL-FRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTE 233 (304)
Q Consensus 158 ~~~~~~~---~~~~~~-~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 233 (304)
....+++ +..+.. .+..+..+...|+++++.++++||+|.+++||..+++|+....+.+++.++.+...+.+...+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~ 241 (358)
T PLN00411 162 VFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVE 241 (358)
T ss_pred cccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHc
Confidence 1100000 000000 001223445779999999999999999999999988875567777888887777776666544
Q ss_pred CC-cccccccCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016 234 PD-PEAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303 (304)
Q Consensus 234 ~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~ 303 (304)
++ ...|..........++|.+++ +.++|.+|++++++.|+++++.+.+++|+++++++++++||++++.
T Consensus 242 ~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~ 311 (358)
T PLN00411 242 KNNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG 311 (358)
T ss_pred cCCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH
Confidence 32 233322222244557788875 5689999999999999999999999999999999999999999864
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=100.00 E-value=1.2e-31 Score=240.15 Aligned_cols=266 Identities=13% Similarity=0.125 Sum_probs=219.6
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHH
Q 022016 1 MSSLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIA 80 (304)
Q Consensus 1 m~~~~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (304)
|..++...-....+...++||.+++.+|...++ +||.+++++|+.+++++++++...+++ +. .++++++.....|
T Consensus 1 ~~~~~~~~~~~~~~~~~~iWg~~~~~~K~~~~~-~~p~~~~~~R~~~a~l~ll~~~~~~~~-~~---~~~~~~~~~~~~g 75 (292)
T PRK11272 1 MRFRQLLPLFGALFALYIIWGSTYLVIRIGVES-WPPLMMAGVRFLIAGILLLAFLLLRGH-PL---PTLRQWLNAALIG 75 (292)
T ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHhCC-CC---CcHHHHHHHHHHH
Confidence 344444444667888999999999999999875 999999999999999998887654322 22 2577888888889
Q ss_pred HHHHHHHHHHHHHHh-hccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccc
Q 022016 81 LLGVTINQNTYFEGL-YLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLL 159 (304)
Q Consensus 81 ~~~~~~~~~~~~~al-~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~ 159 (304)
.++...++.+++.+. +++++++++++.++.|+++.+++++ +|||++++ ++.|+++++.|+.++.. ++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~---~~-- 143 (292)
T PRK11272 76 LLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNS---GG-- 143 (292)
T ss_pred HHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhc---Cc--
Confidence 888778888999999 9999999999999999999999986 69999999 99999999999998862 10
Q ss_pred cccCCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 022016 160 NTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAW 239 (304)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 239 (304)
..+....|+++++.++++||.|.+..||..++ ++...+.+++.++++.+.+.....+.+..
T Consensus 144 ---------------~~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 204 (292)
T PRK11272 144 ---------------NLSGNPWGAILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGERLT-- 204 (292)
T ss_pred ---------------ccccchHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCCccc--
Confidence 11233579999999999999999999997543 35667788888888888777664432221
Q ss_pred cccCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016 240 NLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT 302 (304)
Q Consensus 240 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~ 302 (304)
...+...|..+++.+++++.+++.+|++++|+.++++++.+.++||+++.+++++++||+++.
T Consensus 205 ~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~ 267 (292)
T PRK11272 205 ALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSP 267 (292)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 112345788999999999999999999999999999999999999999999999999999985
No 3
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.97 E-value=3.8e-30 Score=226.44 Aligned_cols=245 Identities=18% Similarity=0.245 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 022016 20 YAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLAS 99 (304)
Q Consensus 20 ~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~ 99 (304)
||.+++..|...+++.|+.+..++|...+.+.+.+.... + . +++++++....|.++.++++.+++.|+++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~--~----~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~ 72 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R--P----PLKRLLRLLLLGALQIGVFYVLYFVAVKRLP 72 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c--c----CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999998777999999999999998888776432 2 2 3567778888999988999999999999999
Q ss_pred cchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccCCCCCch
Q 022016 100 SSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENW 179 (304)
Q Consensus 100 ~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (304)
+++++++.++.|+++.+++++++|||++++ ++.|+++++.|+.++.. + ++.+.+
T Consensus 73 ~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~---~-----------------~~~~~~ 126 (260)
T TIGR00950 73 VGEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS---D-----------------GNLSIN 126 (260)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc---C-----------------Cccccc
Confidence 999999999999999999999999999999 99999999999999872 2 112345
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHHhcCCCcccccccCcchHHHHHHHHhhcc
Q 022016 180 LLGCLFLFASACCWSLWLILQVPVSASYP-DHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGS 258 (304)
Q Consensus 180 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 258 (304)
..|+.+++.++++|+.|.+..|+..++.+ ++.....+++.++.+.+.+.....+++. .. +..++..+++.+++++
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~ 202 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGT 202 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHH
Confidence 68999999999999999999999987763 2345555778888888888776443222 11 3457778899999999
Q ss_pred chheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016 259 GVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT 302 (304)
Q Consensus 259 ~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~ 302 (304)
.+++.+|++++|+.++++++.+.+++|+++.+++++++||+++.
T Consensus 203 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~ 246 (260)
T TIGR00950 203 ALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSL 246 (260)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 99999999999999999999999999999999999999999985
No 4
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.97 E-value=7.7e-30 Score=229.14 Aligned_cols=258 Identities=15% Similarity=0.180 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022016 10 AMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQN 89 (304)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 89 (304)
.+..++++++||.+++++|...++ ++|..+.++|+.++++.++++. +++ + .+++ .....|.......+.
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~~~--~~~-~----~~~~---~~~~~g~~~~~~~~~ 74 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIFFV--ARP-K----VPLN---LLLGYGLTISFGQFA 74 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHh--cCC-C----CchH---HHHHHHHHHHHHHHH
Confidence 466888999999999999999876 9999999999999887665543 111 1 1222 234456655456667
Q ss_pred HHHHHhhc-cccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCcccc
Q 022016 90 TYFEGLYL-ASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKS 168 (304)
Q Consensus 90 ~~~~al~~-~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~ 168 (304)
+++.++++ .++++++++.++.|+++.+++++++|||++++ +++|+++++.|+.++. .++.
T Consensus 75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~---~~~~---------- 135 (299)
T PRK11453 75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLI---EDSL---------- 135 (299)
T ss_pred HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhc---cccC----------
Confidence 88889988 58899999999999999999999999999999 9999999999999988 2210
Q ss_pred ccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCc--hhHHHHHHHHHHHHHHHHHHhcCCCc---ccccccC
Q 022016 169 FLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDH--LSLSAWMCFLATLQSATFAIFTEPDP---EAWNLHS 243 (304)
Q Consensus 169 ~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~ 243 (304)
++.+....|+++++.++++|+.|.+++||..++.+++ .....+.+..+.+.....+...+++. ..+...+
T Consensus 136 -----~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (299)
T PRK11453 136 -----NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTID 210 (299)
T ss_pred -----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCC
Confidence 1122345799999999999999999999987655322 33345555555554444443333221 1122234
Q ss_pred cchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016 244 SLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT 302 (304)
Q Consensus 244 ~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~ 302 (304)
...|..++|.|+++++++|.+|++++++.++.+++.+.++||+++.+++++++||+++.
T Consensus 211 ~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~ 269 (299)
T PRK11453 211 MTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTG 269 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccH
Confidence 45799999999999999999999999999999999999999999999999999999985
No 5
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.97 E-value=2.8e-30 Score=231.58 Aligned_cols=263 Identities=11% Similarity=0.093 Sum_probs=197.4
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhcccc-CCCC-CHHHHHHHHH
Q 022016 1 MSSLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYK-SSSM-GLRSFSLIFF 78 (304)
Q Consensus 1 m~~~~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~ 78 (304)
|+|+++.+|++++++++++||.+++..|.. + +++|.++.++|..++.+++.++...+++++. .++. +++++. ...
T Consensus 1 ~~~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 77 (296)
T PRK15430 1 MDAKQTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLA 77 (296)
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHH
Confidence 778889999999999999999999999985 4 4999999999999999888776544322111 0111 334433 334
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCcc
Q 022016 79 IALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKL 158 (304)
Q Consensus 79 ~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~ 158 (304)
.+.++.+.++.++++|++++|+++++++.++.|+++.+++++++|||++++ ++.|+++++.|++++. ++.
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~---~~~- 147 (296)
T PRK15430 78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQL---WTF- 147 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHH---HHc-
Confidence 666667899999999999999999999999999999999999999999999 9999999999999987 221
Q ss_pred ccccCCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHHhcCCCcc
Q 022016 159 LNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYP-DHLSLSAWMCFLATLQSATFAIFTEPDPE 237 (304)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 237 (304)
++. ..+++.++++||.|.+..||..++.. +....+.+.+.++.....+. ......
T Consensus 148 -----------------~~~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 203 (296)
T PRK15430 148 -----------------GSL----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTS 203 (296)
T ss_pred -----------------CCc----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCcc
Confidence 111 14678899999999999999754321 12333344444444332221 111111
Q ss_pred cccccCcch-HHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016 238 AWNLHSSLE-IFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT 302 (304)
Q Consensus 238 ~~~~~~~~~-~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~ 302 (304)
.+. .++.. +....+.|+ .+.++|.+|++++++.++++++.+.+++|+++.+++++++||+++.
T Consensus 204 ~~~-~~~~~~~~~~~~~g~-~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~ 267 (296)
T PRK15430 204 HMG-QNPMSLNLLLIAAGI-VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGA 267 (296)
T ss_pred ccc-CCcHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 111 11222 333444454 6789999999999999999999999999999999999999999986
No 6
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.97 E-value=1.5e-29 Score=226.75 Aligned_cols=264 Identities=14% Similarity=0.092 Sum_probs=197.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHH
Q 022016 6 DYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVT 85 (304)
Q Consensus 6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 85 (304)
+.+++++++.+.++||.+++..|...++ ++|..+.++|+.+++++++++. ++++. + +++ +.....+.++.+
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~---~~~~~-~---~~~-~~~~~~~~l~~~ 72 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV---GFPRL-R---QFP-KRYLLAGGLLFV 72 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc---ccccc-c---ccc-HHHHHHHhHHHH
Confidence 4567888999999999999999999976 9999999999999999887753 11111 1 112 223345555667
Q ss_pred HHHHHHHHHhhc----cccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccc
Q 022016 86 INQNTYFEGLYL----ASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNT 161 (304)
Q Consensus 86 ~~~~~~~~al~~----~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~ 161 (304)
.+..+++.++++ .++++++++.++.|+++.+++++++|||++++ ++.|+++++.|++++. .++....
T Consensus 73 ~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~---~~~~~~~ 143 (295)
T PRK11689 73 SYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVL---GGDNGLS 143 (295)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhhee---cCCccch
Confidence 778888877764 57788899999999999999999999999999 9999999999999988 2221000
Q ss_pred cCCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccc
Q 022016 162 EFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNL 241 (304)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 241 (304)
.++. ..+.++...|+++++.+++|||.|.++.||..++. ++.... . ..+.+.+.+.....+ +.. . .
T Consensus 144 ----~~~~---~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~~--~-~~~~~~l~~~~~~~~-~~~-~-~ 209 (295)
T PRK11689 144 ----LAEL---INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK-NGITLF--F-ILTALALWIKYFLSP-QPA-M-V 209 (295)
T ss_pred ----hhhh---hhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC-CchhHH--H-HHHHHHHHHHHHHhc-Ccc-c-c
Confidence 0000 00112335799999999999999999999987776 465432 2 223333333333222 111 1 1
Q ss_pred cCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016 242 HSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT 302 (304)
Q Consensus 242 ~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~ 302 (304)
.+...|..+++.++ +++++|.+|++++|+.++++++.+.+++|+++++++++++||+++.
T Consensus 210 ~~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~ 269 (295)
T PRK11689 210 FSLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSF 269 (295)
T ss_pred CCHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcH
Confidence 23346777778774 7899999999999999999999999999999999999999999985
No 7
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.96 E-value=2.1e-28 Score=219.14 Aligned_cols=257 Identities=11% Similarity=0.114 Sum_probs=206.1
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHH
Q 022016 3 SLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALL 82 (304)
Q Consensus 3 ~~~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 82 (304)
+.++.+++..++++.++|+.++.+.|++.++ +||.++.++|+.+++++++++... ++ ++.++++++..+..|..
T Consensus 7 ~~~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~--~~---~~~~~~~~~~~~~~g~~ 80 (293)
T PRK10532 7 KLPVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP--WR---LRFAKEQRLPLLFYGVS 80 (293)
T ss_pred ccccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH--Hh---ccCCHHHHHHHHHHHHH
Confidence 4457889999999999999999999999987 999999999999999988776422 21 22357888888888887
Q ss_pred HHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCcccccc
Q 022016 83 GVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTE 162 (304)
Q Consensus 83 ~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~ 162 (304)
. +..+.+++++++++|+++++++.++.|+++.+++. ||.+ +..++.+++.|+.++. .++.
T Consensus 81 ~-~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--------~~~~~~i~~~Gv~li~---~~~~---- 140 (293)
T PRK10532 81 L-GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--------DFVWVVLAVLGLWFLL---PLGQ---- 140 (293)
T ss_pred H-HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--------HHHHHHHHHHHHheee---ecCC----
Confidence 5 78889999999999999999999999999988863 5443 4456778899998877 2210
Q ss_pred CCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCccccccc
Q 022016 163 FLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLH 242 (304)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 242 (304)
+.++....|+++++.++++||.|.+..||..++. ++... .+...++++.+.+.....+++. ..
T Consensus 141 -----------~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~~~~----~~ 203 (293)
T PRK10532 141 -----------DVSHVDLTGAALALGAGACWAIYILSGQRAGAEH-GPATV-AIGSLIAALIFVPIGALQAGEA----LW 203 (293)
T ss_pred -----------CcccCChHHHHHHHHHHHHHHHHHHHHHHHhccC-CchHH-HHHHHHHHHHHHHHHHHccCcc----cC
Confidence 1122345799999999999999999999998776 46665 4566677777776665332211 11
Q ss_pred CcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016 243 SSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT 302 (304)
Q Consensus 243 ~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~ 302 (304)
+...+...++.|++++.++|.+|++++++.++++++.+.++||+++.+++++++||+++.
T Consensus 204 ~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~ 263 (293)
T PRK10532 204 HWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTL 263 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcH
Confidence 223455668999999999999999999999999999999999999999999999999875
No 8
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.96 E-value=4e-28 Score=213.32 Aligned_cols=249 Identities=12% Similarity=0.074 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccc----cCCCCCHHH-HHHHHHHHHH
Q 022016 8 KPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKY----KSSSMGLRS-FSLIFFIALL 82 (304)
Q Consensus 8 ~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~----~~~~~~~~~-~~~~~~~g~~ 82 (304)
||++++++++++||.++++.|. .++ +||.++.++|+.++++++.++...+++++ +.++.++++ +......|.+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 5889999999999999999998 444 99999999999999988877654433211 101122333 3345566666
Q ss_pred HHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCcccccc
Q 022016 83 GVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTE 162 (304)
Q Consensus 83 ~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~ 162 (304)
.+.++.++++|++++++++++++.++.|+++.+++++++|||++++ ++.++++++.|++++.. +
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~---~------ 143 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIV---L------ 143 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHH---H------
Confidence 4899999999999999999999999999999999999999999999 99999999999998872 1
Q ss_pred CCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCccccccc
Q 022016 163 FLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLH 242 (304)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 242 (304)
+++.. .+++.+++||+.|.+..||..++. ....... .........+... ...........
T Consensus 144 ------------~~~~~----~~~l~aa~~~a~~~i~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~ 203 (256)
T TIGR00688 144 ------------KGSLP----WEALVLAFSFTAYGLIRKALKNTD--LAGFCLE-TLSLMPVAIYYLL-QTDFATVQQTN 203 (256)
T ss_pred ------------cCCch----HHHHHHHHHHHHHHHHHhhcCCCC--cchHHHH-HHHHHHHHHHHHH-HhccCcccccC
Confidence 01111 357889999999999999975432 2222111 1111111111111 11111111111
Q ss_pred CcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHH
Q 022016 243 SSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALL 295 (304)
Q Consensus 243 ~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~ 295 (304)
+..+|..+++.|++ +.++|.+|++++|+.++++++++.|+||+++.+++.+.
T Consensus 204 ~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 204 PFPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred chhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 22378888888876 88999999999999999999999999999999999764
No 9
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.95 E-value=3.4e-26 Score=203.79 Aligned_cols=259 Identities=10% Similarity=0.072 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhh-ccccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022016 10 AMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSS-RKYKSSSMGLRSFSLIFFIALLGVTINQ 88 (304)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 88 (304)
..+.++++++|+...+..|...++ .++ ..+++.....+.+.|+...+. ++.+ +. .+++++.....+.++...++
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGW-SR-LPATFWLLLAISAVANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCC-CC-cchhhHHHHHHHHHHHHHHH
Confidence 457789999999999999976644 344 357777777777777765432 2222 22 23444445555555568999
Q ss_pred HHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCcccc
Q 022016 89 NTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKS 168 (304)
Q Consensus 89 ~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~ 168 (304)
.++++|++++++++++.+.++.|+++.+++++++|||++++ ++.|+.+++.|++++. .++
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~---~~~----------- 137 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLG---LSR----------- 137 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHh---ccc-----------
Confidence 99999999999999999999999999999999999999999 9999999999999987 221
Q ss_pred ccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchh----HHHHHHHHHHHHHHHHHHhcCCCcccccccCc
Q 022016 169 FLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLS----LSAWMCFLATLQSATFAIFTEPDPEAWNLHSS 244 (304)
Q Consensus 169 ~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 244 (304)
..+.+..|+.+++.++++|+.|.+..|+..++.+ +.. ...+.+..+++...+.....+... .. .+.
T Consensus 138 ------~~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~ 207 (281)
T TIGR03340 138 ------FAQHRRKAYAWALAAALGTAIYSLSDKAAALGVP-AFYSALGYLGIGFLAMGWPFLLLYLKRHGRS--MF-PYA 207 (281)
T ss_pred ------ccccchhHHHHHHHHHHHHHHhhhhccccccchh-cccccHHHHHHHHHHHHHHHHHHHHHHhccc--hh-hhH
Confidence 1112346888999999999999999998755442 322 222222222122222211111111 11 122
Q ss_pred chHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016 245 LEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303 (304)
Q Consensus 245 ~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~ 303 (304)
..++..++.+.+++.++|.+|++++++.++++++.+.+++|+++.+++++++||+++..
T Consensus 208 ~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~ 266 (281)
T TIGR03340 208 RQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT 266 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH
Confidence 34566778888899999999999999999999999999999999999999999999853
No 10
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.94 E-value=1.8e-25 Score=201.15 Aligned_cols=258 Identities=15% Similarity=0.089 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022016 15 ALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEG 94 (304)
Q Consensus 15 ~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a 94 (304)
.-..+-...-+.+|+++++--.|..+.+.|+..+.+...+... .+.+++ ++.++++++.....|+++ +.+..+.+.|
T Consensus 9 ~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~g~~~-~~~~~~~~~~ 85 (302)
T TIGR00817 9 LWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLPKR-LKISSALLKLLLPVAIVH-TIGHVTSNVS 85 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCC-CCCCHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3333444444689999975466899999999988877655521 122233 557899999999999997 8899999999
Q ss_pred hhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccCC
Q 022016 95 LYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSS 174 (304)
Q Consensus 95 l~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~ 174 (304)
+++++++.++++.++.|+++.+++++++|||++++ ++.|+++++.|+++.. ..
T Consensus 86 l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~---~~------------------ 138 (302)
T TIGR00817 86 LSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS---DT------------------ 138 (302)
T ss_pred HHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc---CC------------------
Confidence 99999999999999999999999999999999999 9999999999998765 11
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhHHHHhh--cCCCchhHHHHHHHHHHHHHHHHHHhcCCCcc---cccc----cCc-
Q 022016 175 GGENWLLGCLFLFASACCWSLWLILQVPVSA--SYPDHLSLSAWMCFLATLQSATFAIFTEPDPE---AWNL----HSS- 244 (304)
Q Consensus 175 ~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~----~~~- 244 (304)
+.+....|+++++.++++|++|.++.||..+ +. |+...+.+++..+.+.+.|.....++... ++.. ...
T Consensus 139 ~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (302)
T TIGR00817 139 ELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVT 217 (302)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCch
Confidence 1223457999999999999999999999887 66 68999999999999999988775543211 1100 000
Q ss_pred chHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016 245 LEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303 (304)
Q Consensus 245 ~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~ 303 (304)
..+...+..+..+....+.++++++++.++.+.+...+++|++++++|++++||+++..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~ 276 (302)
T TIGR00817 218 KIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ 276 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh
Confidence 11211223332222222345568999999999999999999999999999999999863
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.92 E-value=3e-23 Score=189.97 Aligned_cols=266 Identities=15% Similarity=0.114 Sum_probs=206.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHhhhccccCCCC--CHHHHHHHHHHHHH
Q 022016 6 DYKPAMAMLALQFSYAVVALSTRAALLQGMN-PRVFVVYRQAIATLFMAPMAYLSSRKYKSSSM--GLRSFSLIFFIALL 82 (304)
Q Consensus 6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~-p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~ 82 (304)
+.+...+.+....+-......+|.++++ ++ |..+..+|++++.++...++... .+++ ++. .+++++..+..|++
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~llp~gl~ 123 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWATG-FRKI-PRIKSLKLFLKNFLPQGLC 123 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHhC-CCCC-CCCCCHHHHHHHHHHHHHH
Confidence 4455666666666667777899999976 99 99999999999988765554322 2222 334 35577888899999
Q ss_pred HHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCcccccc
Q 022016 83 GVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTE 162 (304)
Q Consensus 83 ~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~ 162 (304)
+.+ .+...+.|+++++++.++++..+.|+++.+++++++|||++++ ++.++++++.|+.+... .
T Consensus 124 ~~~-~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~---~------ 187 (350)
T PTZ00343 124 HLF-VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV---K------ 187 (350)
T ss_pred HHH-HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec---c------
Confidence 854 4666779999999999999999999999999999999999999 99999999999999882 2
Q ss_pred CCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCC------CchhHHHHHHHHHHHHHHHHHHhcCCC-
Q 022016 163 FLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYP------DHLSLSAWMCFLATLQSATFAIFTEPD- 235 (304)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~- 235 (304)
+.+....|++++++|+++|++|.++.|+..++.+ ++.....+....+.+.++|.....|..
T Consensus 188 ------------~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~ 255 (350)
T PTZ00343 188 ------------ELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKK 255 (350)
T ss_pred ------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 1223568999999999999999999999876541 355555666888999998887755432
Q ss_pred -ccccc----ccCcchHHHHHHHHhhccchheeeeee----eecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016 236 -PEAWN----LHSSLEIFCCFFSGAIGSGVSFCVQAW----CISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303 (304)
Q Consensus 236 -~~~~~----~~~~~~~~~~~~~g~~~~~~~~~l~~~----~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~ 303 (304)
...+. ..+...+..+.+ .++.+++++.+|++ +++++++...+...+++|+++++++++++||+++..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~-~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~ 331 (350)
T PTZ00343 256 WVPVWTNYTANMTNYTKGIIIF-KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL 331 (350)
T ss_pred HHHHHHHhhhcccccchHHHHH-HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH
Confidence 11110 001112233344 45567999999985 999999999999999999999999999999999863
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.91 E-value=2.4e-22 Score=178.79 Aligned_cols=265 Identities=23% Similarity=0.285 Sum_probs=203.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHH
Q 022016 4 LRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLG 83 (304)
Q Consensus 4 ~~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 83 (304)
++...+....++.++.|+.+....|...++..++....+.|...+.....+.... ++... ++ ..+++++..+.+.++
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~-~~~~~~~~~~~~~~~ 79 (292)
T COG0697 3 RALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGL-RP-ALRPWLLLLLLALLG 79 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hcccc-cc-cccchHHHHHHHHHH
Confidence 4466778888999999999999999998653666666677999998884443322 11111 11 122245667777777
Q ss_pred HHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHH-HHhcccccccccccchhhhHHHHHHHhHhhhhhccCCcccccc
Q 022016 84 VTINQNTYFEGLYLASSSMASAMGNLIPAITFVMAS-IVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTE 162 (304)
Q Consensus 84 ~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~-l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~ 162 (304)
...++.+++.+++++++++++.+.++.|+++.++++ +++|||++++ ++.++.+++.|++++. .++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~---~~~~~--- 147 (292)
T COG0697 80 LALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLIL---LGGGG--- 147 (292)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhee---cCCCc---
Confidence 799999999999999999999999999999999997 6679999999 9999999999999999 33211
Q ss_pred CCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHH-HHHHHHHHHHHHHHHhcCCCcccccc
Q 022016 163 FLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSA-WMCFLATLQSATFAIFTEPDPEAWNL 241 (304)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~ 241 (304)
+..+ ...|+.+++.++++|+.+.+..|+.. +. ++..... +..........+... .+.+ ..
T Consensus 148 -----------~~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~ 208 (292)
T COG0697 148 -----------GGIL-SLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLLLALLLLLLFFL-SGFG----AP 208 (292)
T ss_pred -----------chhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHHHHHHHHHHHHh-cccc----cc
Confidence 0111 67999999999999999999999987 54 3555554 444322222222222 1111 22
Q ss_pred cCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016 242 HSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT 302 (304)
Q Consensus 242 ~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~ 302 (304)
.+..++....+.|++++++++.+|++++++.+++.++...+++|+++.+++++++||+++.
T Consensus 209 ~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~ 269 (292)
T COG0697 209 ILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSP 269 (292)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 2345788889999999999999999999999999999999999999999999999999875
No 13
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.88 E-value=4.2e-21 Score=172.33 Aligned_cols=275 Identities=14% Similarity=0.121 Sum_probs=213.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHhhhc-cccCCCCCHHHHHHHHHHHHHH
Q 022016 6 DYKPAMAMLALQFSYAVVALSTRAALLQGMN-PRVFVVYRQAIATLFMAPMAYLSSR-KYKSSSMGLRSFSLIFFIALLG 83 (304)
Q Consensus 6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~-p~~~~~~R~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~ 83 (304)
..+..+..=..+++-+.+...+....++|.+ |....++-+..-.++..+...++++ ++. .+..+++++++++.+++.
T Consensus 11 ~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~-~~~~~~~~w~y~lla~~D 89 (334)
T PF06027_consen 11 FWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKW-LKVLKRPWWKYFLLALLD 89 (334)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccc-hhhcchhHHHHHHHHHHH
Confidence 3445555556778888888888888877766 7777777777777766665554333 233 334567788888999998
Q ss_pred HHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccC
Q 022016 84 VTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEF 163 (304)
Q Consensus 84 ~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~ 163 (304)
..++.+.+.|++|++.+.++++..+.-+++.+++++++|||.++. |++|+++++.|+.++... +... .
T Consensus 90 -v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~s--D~~~-~-- 157 (334)
T PF06027_consen 90 -VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVS--DVLS-G-- 157 (334)
T ss_pred -HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeee--cccc-c--
Confidence 899999999999999999999999999999999999999999999 999999999999998841 1111 0
Q ss_pred CccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCC-ccccccc
Q 022016 164 LPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPD-PEAWNLH 242 (304)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~ 242 (304)
++++++++..+||++++.|+++||++.++.++..++.+ ......+..++|.+...+...+.|.+ .......
T Consensus 158 -------~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~ 229 (334)
T PF06027_consen 158 -------SDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIHWT 229 (334)
T ss_pred -------ccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccCCC
Confidence 01235567889999999999999999999999999984 88888888889999888777666533 2222211
Q ss_pred CcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016 243 SSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303 (304)
Q Consensus 243 ~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~ 303 (304)
...+.. .....++...-|.+....++..+|+..+.-..+..+++++++++++|+++++.
T Consensus 230 -~~~~~~-~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l 288 (334)
T PF06027_consen 230 -SQVIGL-LVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL 288 (334)
T ss_pred -hhhHHH-HHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH
Confidence 122222 22223355666777888999999999999999999999999999999999863
No 14
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.86 E-value=3.5e-20 Score=159.19 Aligned_cols=261 Identities=13% Similarity=0.104 Sum_probs=202.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCC--CCCHHHHHHHHHHHH
Q 022016 4 LRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSS--SMGLRSFSLIFFIAL 81 (304)
Q Consensus 4 ~~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~ 81 (304)
++..+|+++.+.+.++||..+...|... + .++.++...|...+..++..+....++++..+ .-++|++..+.+.+.
T Consensus 3 ~~~~~Gil~~l~Ay~lwG~lp~y~kll~-~-~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~ 80 (293)
T COG2962 3 KDSRKGILLALLAYLLWGLLPLYFKLLE-P-LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL 80 (293)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHc-c-CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH
Confidence 4567999999999999999999999975 3 89999999999999999888776655433211 113455555666666
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccc
Q 022016 82 LGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNT 161 (304)
Q Consensus 82 ~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~ 161 (304)
. ...++..|.+|.+...+-++++-++..|++..+++.+++|||+++. |++++.++..|+......
T Consensus 81 l-i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~-------- 145 (293)
T COG2962 81 L-IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWL-------- 145 (293)
T ss_pred H-HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHH--------
Confidence 6 4999999999999999999999999999999999999999999999 999999999999999841
Q ss_pred cCCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccc
Q 022016 162 EFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNL 241 (304)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 241 (304)
.++-. ..++.=+++|+.|...-|+.. . |+.+-...-+..-...........+...+....
T Consensus 146 -------------~g~lp----wval~la~sf~~Ygl~RK~~~--v-~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~ 205 (293)
T COG2962 146 -------------LGSLP----WVALALALSFGLYGLLRKKLK--V-DALTGLTLETLLLLPVALIYLLFLADSGQFLQQ 205 (293)
T ss_pred -------------cCCCc----HHHHHHHHHHHHHHHHHHhcC--C-chHHhHHHHHHHHhHHHHHHHHHHhcCchhhhc
Confidence 12222 244556799999998877652 3 354444444444444444444433322221111
Q ss_pred cCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016 242 HSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT 302 (304)
Q Consensus 242 ~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~ 302 (304)
.++..+..++..|. .|.++..++..+.|+++-+..+.+.|.+|..-.+++.+++||+++.
T Consensus 206 ~~~~~~~LLv~aG~-vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~ 265 (293)
T COG2962 206 NANSLWLLLVLAGL-VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDS 265 (293)
T ss_pred CCchHHHHHHHhhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 34456777777777 6889999999999999999999999999999999999999999975
No 15
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.86 E-value=5.3e-23 Score=173.22 Aligned_cols=276 Identities=11% Similarity=0.036 Sum_probs=212.4
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHH
Q 022016 3 SLRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALL 82 (304)
Q Consensus 3 ~~~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 82 (304)
++++.+|..+..+. ..+....++.+...+ .+|.+....|+++-.+...|-..++++.-.. +..+-+++++.|+.
T Consensus 33 ~d~p~~gl~l~~vs-~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~g---p~g~R~~LiLRg~m 106 (346)
T KOG4510|consen 33 KDKPNLGLLLLTVS-YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIG---PEGKRKWLILRGFM 106 (346)
T ss_pred cCCCccCceehhhH-HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeec---CCCcEEEEEeehhh
Confidence 45667777777666 666666666666664 6999999999777777666654443332211 23334567788999
Q ss_pred HHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCcccccc
Q 022016 83 GVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTE 162 (304)
Q Consensus 83 ~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~ 162 (304)
| ..+..+.|+|++|.+.++|+++.+..|.++++++|.++|||.+.. +.++..+.+.|+++++ +|.+.+.+
T Consensus 107 G-~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIv---RPpFlFG~ 176 (346)
T KOG4510|consen 107 G-FTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIV---RPPFLFGD 176 (346)
T ss_pred h-hhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEe---cCCcccCC
Confidence 8 777888899999999999999999999999999999999999999 9999999999999999 99888765
Q ss_pred CCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCccccccc
Q 022016 163 FLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLH 242 (304)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 242 (304)
+...++. +..+.+..|...++.+++..|--.++.|+..++.+ ......|..+++++...+..... +.. .++ .
T Consensus 177 ~t~g~~~----s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h-~~msvsyf~~i~lV~s~I~~~~i-g~~-~lP-~ 248 (346)
T KOG4510|consen 177 TTEGEDS----SQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAH-AIMSVSYFSLITLVVSLIGCASI-GAV-QLP-H 248 (346)
T ss_pred Ccccccc----ccccccCCchHHHHHhHhhhhhHHHHHHHhhcccc-EEEEehHHHHHHHHHHHHHHhhc-cce-ecC-c
Confidence 5332222 12244556677888888888888888888878874 66666777777777776554422 222 122 2
Q ss_pred CcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016 243 SSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303 (304)
Q Consensus 243 ~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~ 303 (304)
...+|+.++.+|++ +.+++.+...++|+..|+.++.+.+.+.++|.++..++|||-+++-
T Consensus 249 cgkdr~l~~~lGvf-gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~w 308 (346)
T KOG4510|consen 249 CGKDRWLFVNLGVF-GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIW 308 (346)
T ss_pred cccceEEEEEehhh-hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHH
Confidence 34688888889985 5788999999999999999999999999999999999999998863
No 16
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.85 E-value=4.4e-20 Score=164.90 Aligned_cols=256 Identities=15% Similarity=0.094 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC-HHHHHHHHHHHHHHHHHH
Q 022016 9 PAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMG-LRSFSLIFFIALLGVTIN 87 (304)
Q Consensus 9 g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~ 87 (304)
+++++++++++||.+++..|... |.++.++. |..++.+++..+....++ + +.+ ++.+..-+..|.. ...+
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~-~---~~~~~~~~~~g~l~G~~-w~ig 72 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVL-P---EFWALSIFLVGLLSGAF-WALG 72 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhC-C---cccccHHHHHHHHHHHH-HHhh
Confidence 46789999999999999999975 58888876 777777777665544332 1 122 3333334444444 6889
Q ss_pred HHHHHHHhhccccchhhhhcc-hhHHHHHHHHHHHhcccccccccccchh----hhHHHHHHHhHhhhhhccCCcccccc
Q 022016 88 QNTYFEGLYLASSSMASAMGN-LIPAITFVMASIVGLEKIDLGSVRSVAK----ILGTIFCVGGAISMALLRGPKLLNTE 162 (304)
Q Consensus 88 ~~~~~~al~~~~~~~a~~i~~-~~Pi~~~lla~l~~~er~~~~~~~~~~~----~~g~~l~~~G~~li~~~~~~~~~~~~ 162 (304)
+.+++.++++++++.+..+.+ +.|++..+.+.+++|||.+++ + ..|+++.+.|++++.. .+..
T Consensus 73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~---~~~~--- 140 (290)
T TIGR00776 73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSR---SKDK--- 140 (290)
T ss_pred hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEe---cccc---
Confidence 999999999999999999998 888899999999999999998 8 9999999999888862 1100
Q ss_pred CCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhH---HHHHHHHHHHHHHHHHHhcCCCcccc
Q 022016 163 FLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSL---SAWMCFLATLQSATFAIFTEPDPEAW 239 (304)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~ 239 (304)
+.+ +++..+..+|.++++.++++|+.|.+..|+. ++ +|... ..+.+++++....+... +..++
T Consensus 141 --~~~-----~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~ 206 (290)
T TIGR00776 141 --SAG-----IKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGIIFNLGHI----LAKPL 206 (290)
T ss_pred --ccc-----cccccchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHHHHHHHHh----cccch
Confidence 000 0000234689999999999999999999976 35 57777 44444444444333221 11111
Q ss_pred cccCcchHHHHHHHHhhccchheeeeeeeec-ccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016 240 NLHSSLEIFCCFFSGAIGSGVSFCVQAWCIS-KRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303 (304)
Q Consensus 240 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~-~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~ 303 (304)
.++..+.....|++ .++++.+|..+.+ +.+++.++.+...||+.+.+.+++++||+.+..
T Consensus 207 ---~~~~~~~~~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~ 267 (290)
T TIGR00776 207 ---KKYAILLNILPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR 267 (290)
T ss_pred ---HHHHHHHHHHHHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 12233334448887 7999999999999 999999999999999999999999999998753
No 17
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.85 E-value=1.4e-19 Score=151.59 Aligned_cols=253 Identities=13% Similarity=0.102 Sum_probs=210.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022016 9 PAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQ 88 (304)
Q Consensus 9 g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 88 (304)
++..++.+.+.--....+.|...+. ++|.-.+..|..++++++.++.. .++ .+.+++++......|... +.-|
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~R---Pwr--~r~~~~~~~~~~~yGvsL-g~MN 85 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALFR---PWR--RRLSKPQRLALLAYGVSL-GGMN 85 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHhh---HHH--hccChhhhHHHHHHHHHH-HHHH
Confidence 5777888888888888899999987 99999999999999999888742 222 345789999999999997 8889
Q ss_pred HHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCcccc
Q 022016 89 NTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKS 168 (304)
Q Consensus 89 ~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~ 168 (304)
++||.++++.|.+.+..+-++-|+.+.+++. | +.+ ....+.+++.|..++...+
T Consensus 86 l~FY~si~riPlGiAVAiEF~GPL~vA~~~s---R---r~~------d~vwvaLAvlGi~lL~p~~-------------- 139 (292)
T COG5006 86 LLFYLSIERIPLGIAVAIEFTGPLAVALLSS---R---RLR------DFVWVALAVLGIWLLLPLG-------------- 139 (292)
T ss_pred HHHHHHHHhccchhhhhhhhccHHHHHHHhc---c---chh------hHHHHHHHHHHHHhheecc--------------
Confidence 9999999999999999999999998877754 2 222 6677889999999888311
Q ss_pred ccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccccCcchHH
Q 022016 169 FLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIF 248 (304)
Q Consensus 169 ~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (304)
++.++-+..|..+++.++.||+.|.+..||..+.. +...-....+.++++..+|+..... ... ..++.-..
T Consensus 140 ----~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~-~g~~g~a~gm~vAaviv~Pig~~~a-g~~---l~~p~ll~ 210 (292)
T COG5006 140 ----QSVWSLDPVGVALALGAGACWALYIVLGQRAGRAE-HGTAGVAVGMLVAALIVLPIGAAQA-GPA---LFSPSLLP 210 (292)
T ss_pred ----CCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccC-CCchHHHHHHHHHHHHHhhhhhhhc-chh---hcChHHHH
Confidence 13455677999999999999999999999998766 4778888999999999999887222 221 12334566
Q ss_pred HHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016 249 CCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303 (304)
Q Consensus 249 ~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~ 303 (304)
.-+..+++++.++|.+=..++++.+....+.++++||.++.+.+++++||.+|..
T Consensus 211 laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~ 265 (292)
T COG5006 211 LALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI 265 (292)
T ss_pred HHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH
Confidence 6688999999999999999999999999999999999999999999999999863
No 18
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.69 E-value=3.1e-16 Score=118.29 Aligned_cols=136 Identities=15% Similarity=0.250 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHH
Q 022016 8 KPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTIN 87 (304)
Q Consensus 8 ~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 87 (304)
...+++++++++||...++.|...++ +||....+.|..+...++..++...++.+.....++|.|..+.+.|+.+ +++
T Consensus 3 ~~~~~ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-gls 80 (140)
T COG2510 3 AAIIYALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLS 80 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHH
Confidence 34678999999999999999999975 9999999999999999999988876665543346888898888888776 999
Q ss_pred HHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016 88 QNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMA 151 (304)
Q Consensus 88 ~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~ 151 (304)
+.+||.|++..+++....+..++|+++.+++++++|||++.. +++|+++...|++++.
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs 138 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999999999 9999999999998875
No 19
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.63 E-value=8.5e-16 Score=135.78 Aligned_cols=209 Identities=18% Similarity=0.199 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhc
Q 022016 74 SLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALL 153 (304)
Q Consensus 74 ~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~ 153 (304)
+..+....+- ++.++.++.|+.+++++..+++.+++-+|+.+++.++.+||+++. |.++..+++.|++++...
T Consensus 160 k~sl~fc~lW-F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~ 232 (416)
T KOG2765|consen 160 KLSLFFCPLW-FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMG 232 (416)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEec
Confidence 3444555554 889999999999999999999999999999999999999999999 999999999999999963
Q ss_pred cCCccccccCCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHH---HHHHHHHHHHHHHHH
Q 022016 154 RGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSA---WMCFLATLQSATFAI 230 (304)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 230 (304)
+..+.+ +.+......|+++++++|+.||+|.++.||...++.....+.. +.-++..+.+.|..+
T Consensus 233 ~s~~~~-------------~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~ 299 (416)
T KOG2765|consen 233 DSKQNS-------------DLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLI 299 (416)
T ss_pred cccccc-------------cCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHH
Confidence 322111 2345667899999999999999999999999877632333333 334444444554433
Q ss_pred hcC-CCcccccccCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016 231 FTE-PDPEAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT 302 (304)
Q Consensus 231 ~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~ 302 (304)
+.. ...+.+..++......++..+.+++.++-++|.++.-..++..++.-+.++-+.|++.+.++-+.++|+
T Consensus 300 iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~ 372 (416)
T KOG2765|consen 300 ILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSA 372 (416)
T ss_pred HHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCH
Confidence 222 123345555555667778888999999999999999999999999999999999999999998887764
No 20
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.61 E-value=3.3e-15 Score=116.10 Aligned_cols=125 Identities=22% Similarity=0.388 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022016 18 FSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYL 97 (304)
Q Consensus 18 ~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~ 97 (304)
++||...+..|...++ +||....++|+..+.+ ++++....++++. ++.+++++......|.++...++.++++++++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 77 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPF-KNLSPRQWLWLLFLGLLGTALAYLLYFYALKY 77 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccc-cCCChhhhhhhhHhhccceehHHHHHHHHHHh
Confidence 4699999999999977 9999999999999998 6666655555544 56688889989999999779999999999999
Q ss_pred cccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016 98 ASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMA 151 (304)
Q Consensus 98 ~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~ 151 (304)
+++++++.+.++.|+++.+++++++|||++++ ++.|+++++.|++++.
T Consensus 78 ~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 78 ISASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS 125 (126)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 9999999999999875
No 21
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.59 E-value=1.4e-13 Score=123.92 Aligned_cols=261 Identities=10% Similarity=0.047 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHhcC-CC--hHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022016 20 YAVVALSTRAALLQG-MN--PRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLY 96 (304)
Q Consensus 20 ~~~~~~~~k~~~~~~-~~--p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~ 96 (304)
+..+....+....++ .. |..+++..+....+...+.....++++ .++..++.+...+++. .++..+.+.|++
T Consensus 12 ~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~al~ 86 (303)
T PF08449_consen 12 CCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPK----SRKIPLKKYAILSFLF-FLASVLSNAALK 86 (303)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccC----CCcChHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 334445566655443 44 788889998888887777655433122 2445566677788886 888999999999
Q ss_pred ccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccCCCC
Q 022016 97 LASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGG 176 (304)
Q Consensus 97 ~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (304)
|.|...-.++-+..|+.+++++.+++|+|.+++ |+.++++..+|+++....+..+... ++...
T Consensus 87 ~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~~-----------~~~~~ 149 (303)
T PF08449_consen 87 YISYPTQIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSSS-----------SNSSS 149 (303)
T ss_pred hCChHHHHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeecccccccc-----------ccccc
Confidence 999999999999999999999999999999999 9999999999999998532221110 01122
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHHh--cCCCcc--cccccCcchHHHHH
Q 022016 177 ENWLLGCLFLFASACCWSLWLILQVPVSASYP-DHLSLSAWMCFLATLQSATFAIF--TEPDPE--AWNLHSSLEIFCCF 251 (304)
Q Consensus 177 ~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~ 251 (304)
..+..|+++.+.+.++.|.+.+.++|..++++ ++.....+...++.+...+.... .+...+ .+....+..+..++
T Consensus 150 ~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~ 229 (303)
T PF08449_consen 150 FSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLL 229 (303)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHH
Confidence 23344999999999999999999999987764 67788888888988888877775 221111 12222233444444
Q ss_pred HHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016 252 FSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303 (304)
Q Consensus 252 ~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~ 303 (304)
...+ .+.++.....+..++.++...+.+..+.-+.+++++.+++|++++..
T Consensus 230 ~~s~-~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~ 280 (303)
T PF08449_consen 230 LFSL-TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL 280 (303)
T ss_pred HHHH-HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH
Confidence 4444 55666777778999999999999999999999999999999998853
No 22
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.39 E-value=1.3e-11 Score=108.54 Aligned_cols=133 Identities=15% Similarity=0.275 Sum_probs=114.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHH
Q 022016 5 RDYKPAMAMLALQFSYAVVALSTRAALLQGMNP--RVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALL 82 (304)
Q Consensus 5 ~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p--~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 82 (304)
.+.+|.++.++++++|+...+..|...++ .++ .....+|+.++.+++.+.....++. +..+.+++......+.+
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 200 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGPN---PQALSLQWGALLYLGLI 200 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCCC---CCcchHHHHHHHHHHHH
Confidence 45679999999999999999999998865 664 4555578999999888876654332 22367777778889999
Q ss_pred HHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhH
Q 022016 83 GVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGA 147 (304)
Q Consensus 83 ~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~ 147 (304)
+...++.++++++++.++++++.+.++.|+++.+++++++|||++.. ++.|+.+.+.|+
T Consensus 201 ~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~ 259 (260)
T TIGR00950 201 GTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999999999999 999999999886
No 23
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.29 E-value=9.8e-11 Score=101.78 Aligned_cols=218 Identities=13% Similarity=0.102 Sum_probs=155.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHh
Q 022016 69 GLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAI 148 (304)
Q Consensus 69 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~ 148 (304)
++++...+.+.+++- .+.+.+.+.++++.+++.-.++..+..+++++++++++|+|++++ ||.++.+.+.|+.
T Consensus 13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~ 85 (244)
T PF04142_consen 13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVV 85 (244)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHh
Confidence 467788888999995 999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhhhccCCccccccCCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCc-hhHHHHHHHHHHHHHHH
Q 022016 149 SMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDH-LSLSAWMCFLATLQSAT 227 (304)
Q Consensus 149 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~-~~~~~~~~~~~~l~~~~ 227 (304)
+.-..+.+ ..++ ++++..+.+....+...|.++.++++++-++..++..|..|+.+.+ ...+......|.+...+
T Consensus 86 lv~~~~~~--~~~~--~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~ 161 (244)
T PF04142_consen 86 LVQLSSSQ--SSDN--SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLL 161 (244)
T ss_pred eeecCCcc--cccc--ccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Confidence 98742211 1000 0111111122355678999999999999999999999998886433 34444445555555554
Q ss_pred HHHhcCCCc-c---cccccCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016 228 FAIFTEPDP-E---AWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT 302 (304)
Q Consensus 228 ~~~~~~~~~-~---~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~ 302 (304)
.....+.+. . .+..-+...|..++.-++ +=.+....+|+.|...=+......-+.+.+.++.++|.++|.
T Consensus 162 ~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a~-----gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~ 235 (244)
T PF04142_consen 162 ALLLSDGSAISESGFFHGYSWWVWIVIFLQAI-----GGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSL 235 (244)
T ss_pred HHhcccccccccCCchhhcchHHHHHHHHHHH-----hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 443332211 1 111111122333333222 223445678888888888888999999999999999999985
No 24
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.24 E-value=3.1e-11 Score=92.59 Aligned_cols=104 Identities=18% Similarity=0.308 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHH
Q 022016 42 VYRQAIATLFMAPMAYLSSRKYK-SSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASI 120 (304)
Q Consensus 42 ~~R~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l 120 (304)
.+|...+.+++..+...+++.+. .+..+++++.+....|.++...++.++++|+++.+ +.++.+.++.|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 57999999988887766433211 12334566677777788886699999999999999 58999999999999999999
Q ss_pred HhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 121 VGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 121 ~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
++|||++++ ++.++++++.|++++..
T Consensus 81 ~~~er~~~~------~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 81 FFKERLSPR------RWLAILLILIGVILIAW 106 (113)
T ss_pred HhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence 999999999 99999999999999993
No 25
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.22 E-value=8.1e-10 Score=99.02 Aligned_cols=136 Identities=18% Similarity=0.184 Sum_probs=113.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHH
Q 022016 6 DYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVT 85 (304)
Q Consensus 6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 85 (304)
+..|.++.+.++++|+...+..|...++ .++..... -..++++.+.++...... . ...+...+...+..|+++..
T Consensus 146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~~-~~~~~~~~l~~~~~~~~~--~-~~~~~~~~~~~l~lgv~~t~ 220 (293)
T PRK10532 146 DLTGAALALGAGACWAIYILSGQRAGAE-HGPATVAI-GSLIAALIFVPIGALQAG--E-ALWHWSILPLGLAVAILSTA 220 (293)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHH-HHHHHHHHHHHHHHHccC--c-ccCCHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999998754 78877654 445666666666554322 1 22355666666789999989
Q ss_pred HHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 86 INQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 86 ~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
+++.++++++++.++++++.+.+++|++..++++++++|+++.. +++|..+.+.|++....
T Consensus 221 ~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 221 LPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTL 281 (293)
T ss_pred HHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999 99999999999999974
No 26
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.21 E-value=8.9e-12 Score=111.00 Aligned_cols=257 Identities=11% Similarity=0.066 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 022016 16 LQFSYAVVALSTRAALLQ-G-MNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFE 93 (304)
Q Consensus 16 ~~~~~~~~~~~~k~~~~~-~-~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 93 (304)
...+-.......|+.+++ + --|..++..+...+.+...........+.. +..++..+...+-.|++. +++..+-+.
T Consensus 25 w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~-~~~~~~~~~~llpl~~~~-~~~~v~~n~ 102 (316)
T KOG1441|consen 25 WYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPS-KISSKLPLRTLLPLGLVF-CISHVLGNV 102 (316)
T ss_pred HhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCC-ccccccchHHHHHHHHHH-HHHHHhcch
Confidence 333334444578888873 2 347777777777777666555443322222 222456677788888886 999999999
Q ss_pred HhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccC
Q 022016 94 GLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRS 173 (304)
Q Consensus 94 al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~ 173 (304)
|+++.+++-...+-.++|.++.++++++.+|+.++. ....++....|+.+...
T Consensus 103 Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~--------------------- 155 (316)
T KOG1441|consen 103 SLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASV--------------------- 155 (316)
T ss_pred hhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeee---------------------
Confidence 999999999999999999999999999999999998 88899999999888882
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhHHHHhh--cCC-CchhHHHHHHHHHHHHHH-HHHHhcCCCcc-cccc-cCcchH
Q 022016 174 SGGENWLLGCLFLFASACCWSLWLILQVPVSA--SYP-DHLSLSAWMCFLATLQSA-TFAIFTEPDPE-AWNL-HSSLEI 247 (304)
Q Consensus 174 ~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~--~~~-~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~-~~~~-~~~~~~ 247 (304)
++.+.+..|.+.+..+.+..+...++.|+..+ ++. |+.....+..-++...+. |.....+++.. .+.. .++...
T Consensus 156 ~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~ 235 (316)
T KOG1441|consen 156 TELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTF 235 (316)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhh
Confidence 24456779999999999999999999999984 332 799999998888888888 77765554332 0011 111222
Q ss_pred HHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016 248 FCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT 302 (304)
Q Consensus 248 ~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~ 302 (304)
...++..+ +...-...-+..+.+++|..-++.....-.+++..++.+|+|++|.
T Consensus 236 ~~~~~~sv-~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~ 289 (316)
T KOG1441|consen 236 LILLLNSV-LAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTF 289 (316)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCch
Confidence 22233332 2222234456888999999988888888888888888888887764
No 27
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.19 E-value=6.4e-10 Score=99.62 Aligned_cols=138 Identities=16% Similarity=0.135 Sum_probs=116.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHH
Q 022016 6 DYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVT 85 (304)
Q Consensus 6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 85 (304)
+..|.++.++++++|+...+..|...+ -++.....++...+++.+.++....+.... ...+.+.+......++++..
T Consensus 148 ~~~G~l~~l~a~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~i~~s~ 224 (292)
T PRK11272 148 NPWGAILILIASASWAFGSVWSSRLPL--PVGMMAGAAEMLAAGVVLLIASLLSGERLT-ALPTLSGFLALGYLAVFGSI 224 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHHHHHHHHcCCccc-ccCCHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999653 345667788888888887776654332211 12356778888889999889
Q ss_pred HHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 86 INQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 86 ~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
+++.++++++++.++++++.+.++.|++..++++++++|+++.. +++|.++.+.|+++...
T Consensus 225 ~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 225 IAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 99999999999999873
No 28
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.16 E-value=4.8e-12 Score=106.74 Aligned_cols=254 Identities=14% Similarity=0.166 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022016 17 QFSYAVVALSTRAALLQGMN-PRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGL 95 (304)
Q Consensus 17 ~~~~~~~~~~~k~~~~~~~~-p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al 95 (304)
..+-......+.+..++|.| |....|..++.-+++.-++..+++ +.. +..|..+++++++. .=++.+...|.
T Consensus 27 SL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~-~~~-----~~~~~hYilla~~D-VEaNy~vV~Ay 99 (336)
T KOG2766|consen 27 SLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRR-KYI-----KAKWRHYILLAFVD-VEANYFVVKAY 99 (336)
T ss_pred HHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhh-HHH-----HHHHHHhhheeEEe-ecccEEEeeeh
Confidence 33444444555555555544 777888888888888888776543 222 45566688888887 77788899999
Q ss_pred hccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccCCC
Q 022016 96 YLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSG 175 (304)
Q Consensus 96 ~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (304)
+|++.+.+.++..-....+.+++|+++|.|-++. |+.|.+++++|++.++. .+.... +..+
T Consensus 100 QyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~---sDV~ag----------d~ag 160 (336)
T KOG2766|consen 100 QYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVVF---SDVHAG----------DRAG 160 (336)
T ss_pred hhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEEE---eeeccc----------cccC
Confidence 9999999999998888888999999999999998 99999999999999984 221111 1245
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccccCcchHHHHHHHHh
Q 022016 176 GENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGA 255 (304)
Q Consensus 176 ~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 255 (304)
+.+..+|+++.++++-+||+.++......++. |.........++|++...+-.. .+...- -...+.......+. ..
T Consensus 161 gsnp~~GD~lvi~GATlYaVSNv~EEflvkn~-d~~elm~~lgLfGaIIsaIQ~i-~~~~~~-~tl~w~~~i~~yl~-f~ 236 (336)
T KOG2766|consen 161 GSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA-DRVELMGFLGLFGAIISAIQFI-FERHHV-STLHWDSAIFLYLR-FA 236 (336)
T ss_pred CCCCccCcEEEEecceeeeeccccHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHh-hhccce-eeEeehHHHHHHHH-HH
Confidence 67788999999999999999999999999998 4888999999999998887744 332211 11111112222222 23
Q ss_pred hccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016 256 IGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT 302 (304)
Q Consensus 256 ~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~ 302 (304)
.+..+-|.+.-..+|..+++..+.-....-.+++++ ..||-+.+|
T Consensus 237 L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~w 281 (336)
T KOG2766|consen 237 LTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDW 281 (336)
T ss_pred HHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhh
Confidence 344555666778889999999999999999999988 455555554
No 29
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.15 E-value=1.9e-10 Score=87.22 Aligned_cols=119 Identities=14% Similarity=0.076 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccccCcchHHHHHHHHhhccchh
Q 022016 182 GCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGSGVS 261 (304)
Q Consensus 182 G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 261 (304)
-.++++++++.+++..+..|-..++. ||...+..+.......+..+....+ +++.....++..|..++..|+ .++++
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g-~~~~~~~~~~k~~lflilSGl-a~gls 80 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTG-NWQAGGEIGPKSWLFLILSGL-AGGLS 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcC-ceecccccCcceehhhhHHHH-HHHHH
Confidence 45789999999999999999999888 7999999999988888877776443 443333346678888888885 89999
Q ss_pred eeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016 262 FCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303 (304)
Q Consensus 262 ~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~ 303 (304)
..+|++++|..+++++.++..+.|+++.++++++++|++|..
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~ 122 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP 122 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH
Confidence 999999999999999999999999999999999999999863
No 30
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.10 E-value=3.5e-09 Score=97.19 Aligned_cols=136 Identities=10% Similarity=0.067 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHHHHHHHhhhcccc---CCCCCHHHHHHHHHHHHHH
Q 022016 8 KPAMAMLALQFSYAVVALSTRAALLQGMNPR-VFVVYRQAIATLFMAPMAYLSSRKYK---SSSMGLRSFSLIFFIALLG 83 (304)
Q Consensus 8 ~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~-~~~~~R~~~a~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~ 83 (304)
.|.++++.++++|+...+..|...++ +++. ...++....+.+.+.+.....++... ....+.. ....+..++.
T Consensus 189 lG~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~- 265 (358)
T PLN00411 189 IGGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAII- 265 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHH-
Confidence 47889999999999999999998766 6554 55667766666665554444332111 0112222 2234445554
Q ss_pred HHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 84 VTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 84 ~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
..+.+.++++++++.+++.+++..++.|+++.++++++++|++++. +++|.++.+.|+.+...
T Consensus 266 t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 266 TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMW 328 (358)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999 99999999999999874
No 31
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.07 E-value=7.8e-11 Score=91.29 Aligned_cols=108 Identities=16% Similarity=0.328 Sum_probs=92.3
Q ss_pred HHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccccCcchHHHHHHHHhhccchheeeeeeeec
Q 022016 191 CCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCIS 270 (304)
Q Consensus 191 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~ 270 (304)
++||.+.+..|+..++. |+.....+++..+.+ ..+.....+... ....+..++....+.+.+++.+++.+++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 47899999999999998 599999999999998 666665454332 22334457788888999889999999999999
Q ss_pred ccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016 271 KRGPLFSAMFNPLCTVIVTILAALLLHEEIYT 302 (304)
Q Consensus 271 ~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~ 302 (304)
+.+++.++.+.+++|+++.++++++++|+++.
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~ 108 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSW 108 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999985
No 32
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.07 E-value=4e-09 Score=94.64 Aligned_cols=133 Identities=12% Similarity=0.123 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHH
Q 022016 7 YKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTI 86 (304)
Q Consensus 7 ~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 86 (304)
..|.++++.++++|+...+..|...++ .++..... ..+.+.+.+.....+. .. ...+.+.+......|+ ..++
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~-~~~~~~~~---~~~~~~l~~~~~~~~~-~~-~~~~~~~~~~l~~~~~-~t~~ 227 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARG-KNGITLFF---ILTALALWIKYFLSPQ-PA-MVFSLPAIIKLLLAAA-AMGF 227 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCC-CCchhHHH---HHHHHHHHHHHHHhcC-cc-ccCCHHHHHHHHHHHH-HHHH
Confidence 458899999999999999999998644 77766432 2333333332222222 11 2346677777777775 4588
Q ss_pred HHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 87 NQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 87 ~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
.+.++++++++.+++.++.+.++.|++..++++++++|+++.. +++|.++.+.|+.+...
T Consensus 228 ~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 228 GYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHhh
Confidence 9999999999999999999999999999999999999999999 99999999999988873
No 33
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=3.8e-08 Score=86.45 Aligned_cols=251 Identities=13% Similarity=0.070 Sum_probs=183.3
Q ss_pred HHHHHHHHHHhcCCChHHHHH--HHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 022016 22 VVALSTRAALLQGMNPRVFVV--YRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLAS 99 (304)
Q Consensus 22 ~~~~~~k~~~~~~~~p~~~~~--~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~ 99 (304)
.+-+..|.++.+.=-|..+.. .+.+.+.+.+...- ..+--+. ++++++..+..+-..++- ......-..+++|.+
T Consensus 26 lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk-~~~lv~~-~~l~~~~~kk~~P~~~lf-~~~i~t~~~slk~ln 102 (314)
T KOG1444|consen 26 LMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLK-RLGLVNF-RPLDLRTAKKWFPVSLLF-VGMLFTGSKSLKYLN 102 (314)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH-Hhceeec-CCcChHHHHHHccHHHHH-HHHHHHccccccccC
Confidence 345678888776322333333 77777766665542 2222222 667888888777777775 777888889999999
Q ss_pred cchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccCCCCCch
Q 022016 100 SSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENW 179 (304)
Q Consensus 100 ~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (304)
+..-+++-+..|+++.+....++|.|+++. .+.+.....+|...... + +....
T Consensus 103 Vpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~---~------------------d~sf~ 155 (314)
T KOG1444|consen 103 VPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAF---T------------------DLSFN 155 (314)
T ss_pred chHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhcc---c------------------cceec
Confidence 999999999999999999999999999997 77777777777777762 2 22334
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHHhcCC-C---cccccccCcchHHHHHHHH
Q 022016 180 LLGCLFLFASACCWSLWLILQVPVSASYP-DHLSLSAWMCFLATLQSATFAIFTEP-D---PEAWNLHSSLEIFCCFFSG 254 (304)
Q Consensus 180 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~g 254 (304)
..|..+++...++-+.+.+..|+..+... +......|..+.+.........+++. + .+.....+...+..+...+
T Consensus 156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc 235 (314)
T KOG1444|consen 156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC 235 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence 45999999999999999999999876643 56677888888888888877765542 1 1111112234566777788
Q ss_pred hhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016 255 AIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303 (304)
Q Consensus 255 ~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~ 303 (304)
+++-++.|..+ ++.+..++...+.+....-....+...+++|++.++.
T Consensus 236 v~gf~isy~s~-~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~ 283 (314)
T KOG1444|consen 236 VMGFGISYTSF-LCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL 283 (314)
T ss_pred HHHHHHHHHHH-HHHhhccccceeehhhhhhHHHHHHHHhcCCceechh
Confidence 87777766655 8999999999999997777777777777777777653
No 34
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.98 E-value=2.3e-08 Score=89.90 Aligned_cols=137 Identities=13% Similarity=0.175 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHHHHHHHHHhhhccc-----cCCCCCHHHHHHHHH
Q 022016 7 YKPAMAMLALQFSYAVVALSTRAALLQGMNP---RVFVVYRQAIATLFMAPMAYLSSRKY-----KSSSMGLRSFSLIFF 78 (304)
Q Consensus 7 ~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p---~~~~~~R~~~a~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 78 (304)
..|.++++.++++|+...+..|...++ .++ .....+-...+.+.+.......+... . ...+.+.+...+.
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ 219 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSH-STRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSL-VTIDMTTILSLMY 219 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-cCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh-ccCCHHHHHHHHH
Confidence 468999999999999999999997644 332 33344444444443333322222211 1 2346788888899
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016 79 IALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMA 151 (304)
Q Consensus 79 ~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~ 151 (304)
.|++...+.+.+++.++++.++++++.+..++|++..++++++++|+++.. +++|.++.+.|+.+..
T Consensus 220 l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 220 LAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999 9999999999998876
No 35
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.97 E-value=3.9e-07 Score=81.27 Aligned_cols=273 Identities=13% Similarity=0.131 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHhhhcc--c-cCCCC------CHHHHHH
Q 022016 8 KPAMAMLALQFSYAVVALSTRAALLQG---MNPRVFVVYRQAIATLFMAPMAYLSSRK--Y-KSSSM------GLRSFSL 75 (304)
Q Consensus 8 ~g~~~~l~~~~~~~~~~~~~k~~~~~~---~~p~~~~~~R~~~a~~~l~~~~~~~~~~--~-~~~~~------~~~~~~~ 75 (304)
.-++.++.....++......|+.-..+ +.|...++.-..+-.++...+.+...++ + ..+++ .+++...
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 346667778899999999999987655 7788888888888888777766654322 1 11222 3556667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccC
Q 022016 76 IFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRG 155 (304)
Q Consensus 76 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~ 155 (304)
..+.+++- .+.+.++|.++++.+++.-++...+--+.|+++..+++++|.+++ ||.++++-..|+.++-.
T Consensus 95 ~~vPa~iY-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~--- 164 (345)
T KOG2234|consen 95 VSVPALIY-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQL--- 164 (345)
T ss_pred HHHHHHHH-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhc---
Confidence 77788885 888889999999999999999999999999999999999999999 99999999999999873
Q ss_pred CccccccCCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHH-HHHHHHHHHHHHhcCC
Q 022016 156 PKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMC-FLATLQSATFAIFTEP 234 (304)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 234 (304)
++.+.+ ++. .....++...|....+.++++-++..++..|..|+...+..+--.++ ++|.+......+..+.
T Consensus 165 ~~~~~~-----~a~--~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~ 237 (345)
T KOG2234|consen 165 PSLSPT-----GAK--SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDG 237 (345)
T ss_pred cCCCCC-----Ccc--CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 221110 000 02456778899999999999999999999999877543444444444 4444444333332322
Q ss_pred Ccc---c-ccccCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016 235 DPE---A-WNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT 302 (304)
Q Consensus 235 ~~~---~-~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~ 302 (304)
+.- + +...+...|..++.-+..+ .+-...+|+.|-..=+-...+.-+++.+.++.++|-++|.
T Consensus 238 ~~i~~~gff~G~s~~vw~vVl~~a~gG-----Llvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~ 304 (345)
T KOG2234|consen 238 EAINEYGFFYGYSSIVWLVVLLNAVGG-----LLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTL 304 (345)
T ss_pred cccccCCccccccHHHHHHHHHHhccc-----hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchH
Confidence 111 1 1111222344444444422 3444556676666656666678888888888888888764
No 36
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.94 E-value=9.9e-09 Score=91.41 Aligned_cols=136 Identities=14% Similarity=0.014 Sum_probs=96.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHH
Q 022016 6 DYKPAMAMLALQFSYAVVALSTRAALLQGMNPR----VFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIAL 81 (304)
Q Consensus 6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~----~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 81 (304)
+.++....+.++++|+...+..|...++ .+|. ....+.....++.+.+.....+++. ...+.+.+......+.
T Consensus 142 ~~~g~~~~l~aal~~a~~~i~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 218 (281)
T TIGR03340 142 RRKAYAWALAAALGTAIYSLSDKAAALG-VPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS--MFPYARQILPSATLGG 218 (281)
T ss_pred chhHHHHHHHHHHHHHHhhhhccccccc-hhcccccHHHHHHHHHHHHHHHHHHHHHHhccc--hhhhHHHHHHHHHHHH
Confidence 3467778899999999999999876432 4443 2233333333222222221111111 1112234445556666
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhh
Q 022016 82 LGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISM 150 (304)
Q Consensus 82 ~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li 150 (304)
+...+++.++++++++.+++.++.+.+++|++..+++++++||++++. +++|..+.+.|+.++
T Consensus 219 ~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 219 LMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHhC
Confidence 666899999999999999999999999999999999999999999999 999999999998763
No 37
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.93 E-value=8.7e-09 Score=86.28 Aligned_cols=240 Identities=13% Similarity=0.104 Sum_probs=181.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHH
Q 022016 37 PRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFV 116 (304)
Q Consensus 37 p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~l 116 (304)
....+++++..-.++-=.+..++ ++ .+.++...+.+...++. +.+.....+.|+++.|=....+--+.-|+=+++
T Consensus 53 alaLVf~qC~~N~vfAkvl~~ir-~~---~~~D~t~~~~YaAcs~s-YLlAMVssN~Alq~vpYPTqVlgKScKPIPVMi 127 (337)
T KOG1580|consen 53 ALALVFFQCTANTVFAKVLFLIR-KK---TEIDNTPTKMYAACSAS-YLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMI 127 (337)
T ss_pred HHHHHHHHHHHHHHHHHhheeec-cc---ccccCCcchHHHHHHHH-HHHHHHhccchhcccCCcHHHhcccCCCcceee
Confidence 34455566555555433332222 21 22344444445544444 477888999999999988888888999999999
Q ss_pred HHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccCCCCCchHHHHHHHHHHHHHHHHH
Q 022016 117 MASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLW 196 (304)
Q Consensus 117 la~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~ 196 (304)
++.++.+.+.+|+ +..-.++.++|+++.....+. .++.++.....|.++.+++-..-++.
T Consensus 128 lGVl~~~KsY~w~------kY~cVL~IV~GValFmYK~~K--------------v~g~e~~t~g~GElLL~lSL~mDGlT 187 (337)
T KOG1580|consen 128 LGVLFAHKSYHWR------KYCCVLMIVVGVALFMYKENK--------------VGGAEDKTFGFGELLLILSLAMDGLT 187 (337)
T ss_pred eehhhhcccccHH------HHHHHHHHHHHHHHhhccccc--------------cCCCcccccchHHHHHHHHHHhcccc
Confidence 9999999999999 999999999999999852211 12345667789999999998888999
Q ss_pred HHhHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHHhcCCCcc--cccccCcchHHHHHHHHhhccchheeeeeeeecccC
Q 022016 197 LILQVPVSASYP-DHLSLSAWMCFLATLQSATFAIFTEPDPE--AWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRG 273 (304)
Q Consensus 197 ~~~~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~ 273 (304)
...+.|..+++. ...+...+..+.+.+.+....++++.-++ .+....|..|+-+...++ ++.+++.+.+.-+...+
T Consensus 188 g~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~Fg 266 (337)
T KOG1580|consen 188 GSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFG 266 (337)
T ss_pred hhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhC
Confidence 999988877653 57777888888888888776665553333 233344556777777777 78899999999999999
Q ss_pred ceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016 274 PLFSAMFNPLCTVIVTILAALLLHEEIYT 302 (304)
Q Consensus 274 a~~~s~~~~l~pv~a~l~~~~~~~e~~~~ 302 (304)
+-..|++....-.++++++.++++++++-
T Consensus 267 PLtCSivTTTRKfFTil~SVllf~npls~ 295 (337)
T KOG1580|consen 267 PLTCSIVTTTRKFFTILISVLLFNNPLSG 295 (337)
T ss_pred CeeEEEEeehHHHHHHHHHHHHhcCcCcH
Confidence 99999999999999999999999999863
No 38
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.88 E-value=1.7e-08 Score=90.77 Aligned_cols=140 Identities=11% Similarity=0.152 Sum_probs=107.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhhhccccCC-C-------CCHHHHHH-
Q 022016 6 DYKPAMAMLALQFSYAVVALSTRAALLQ-GMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSS-S-------MGLRSFSL- 75 (304)
Q Consensus 6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~-~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~-~-------~~~~~~~~- 75 (304)
+..|.++++++++.|+...+..|...++ ++||..+..+....+.+.+.|+....+.....+ . ........
T Consensus 143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (302)
T TIGR00817 143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV 222 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence 4568999999999999999999998752 399999999999999999888876543211100 0 00011111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016 76 IFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMA 151 (304)
Q Consensus 76 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~ 151 (304)
....+.......+.+++.+++++++..+++.....|++++++++++++|+++.. +++|.++.+.|+.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~ 292 (302)
T TIGR00817 223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYS 292 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHH
Confidence 222233223344467778999999999999999999999999999999999999 9999999999999887
No 39
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.87 E-value=1.5e-07 Score=81.82 Aligned_cols=237 Identities=13% Similarity=0.103 Sum_probs=162.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccc--CCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHH
Q 022016 37 PRVFVVYRQAIATLFMAPMAYLSSRKYK--SSSMGLRSFSLIF-FIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAI 113 (304)
Q Consensus 37 p~~~~~~R~~~a~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~ 113 (304)
|..++...+++-..+.......++++.. +-..++++..+-. -.|+.+ +..-.+.+.+++|++.+.-++.-+..++|
T Consensus 45 PLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalat-a~DIGLSN~sl~yVtlSlYTM~KSSsi~F 123 (349)
T KOG1443|consen 45 PLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALAT-ALDIGLSNWSLEYVTLSLYTMTKSSSILF 123 (349)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhh-hcccccccceeeeeeeeeeeeccccHHHH
Confidence 7777777777666655444333332221 1245666655444 445554 88999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccCCCCCchHHHHHHHHHHHHHH
Q 022016 114 TFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCW 193 (304)
Q Consensus 114 ~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~ 193 (304)
+.+++.++.-||++|. -..-+.+..+|+++... .+.+....|..+..+++++-
T Consensus 124 IllFs~if~lEk~~w~------L~l~v~lI~~Glflft~---------------------KsTqf~i~Gf~lv~~aS~~s 176 (349)
T KOG1443|consen 124 ILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFTY---------------------KSTQFNIEGFFLVLAASLLS 176 (349)
T ss_pred HHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEEe---------------------cccceeehhHHHHHHHHHhh
Confidence 9999999999999996 55555555566666662 24556778999998888887
Q ss_pred HHHHHhHHHHhhcCC----CchhHHHHHHHHHHHHHHHHHHhcCCCcc-----cccccCcch-HHHHHHHHhhccchhee
Q 022016 194 SLWLILQVPVSASYP----DHLSLSAWMCFLATLQSATFAIFTEPDPE-----AWNLHSSLE-IFCCFFSGAIGSGVSFC 263 (304)
Q Consensus 194 a~~~~~~k~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~g~~~~~~~~~ 263 (304)
++--...+...++.| ||........-...+.+.|..+..|+... .+...+... +..+...++ +..+++.
T Consensus 177 GlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~g~laF~ 255 (349)
T KOG1443|consen 177 GLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-GGLLAFL 255 (349)
T ss_pred hhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-HHHHHHH
Confidence 777777766665543 67777777776777777777776765422 222223222 222233333 3333333
Q ss_pred ee---eeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016 264 VQ---AWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT 302 (304)
Q Consensus 264 l~---~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~ 302 (304)
+- +--+.+++.-..+...-..-+...+++..+.+|+++.
T Consensus 256 l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~ 297 (349)
T KOG1443|consen 256 LEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSL 297 (349)
T ss_pred HHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhh
Confidence 32 3556788888889999999999999999999999874
No 40
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.87 E-value=8.3e-08 Score=83.61 Aligned_cols=234 Identities=15% Similarity=0.128 Sum_probs=150.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcch-hHH
Q 022016 36 NPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMG--LRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNL-IPA 112 (304)
Q Consensus 36 ~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~-~Pi 112 (304)
+|.+-.+--...+.++-+....+ .+ |..+ .+.+...++.|++- .+++...+.|.++.+++.+-.+..- +-+
T Consensus 11 ~~~~Q~lG~t~Gali~alv~~~~-~~----p~~~~~~~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLv 84 (269)
T PF06800_consen 11 KPANQILGTTIGALIFALVVFLF-RQ----PAFSMSGTSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLV 84 (269)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-hC----CCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHH
Confidence 45554444444444433333322 23 3344 47788888888886 9999999999999999999999964 446
Q ss_pred HHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccCCCCCchHHHHHHHHHHHHH
Q 022016 113 ITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACC 192 (304)
Q Consensus 113 ~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~ 192 (304)
.+.+.+.++++|--+.. .-..-..++++.++|+.+....+.++ + +.++.++..+|....+++++.
T Consensus 85 g~sl~gv~~fgEW~~~~--~~~~G~~Al~liiiGv~lts~~~~~~---------~----~~~~~~~~~kgi~~Ll~stig 149 (269)
T PF06800_consen 85 GTSLIGVLFFGEWTTTT--QKIIGFLALVLIIIGVILTSYQDKKS---------D----KSSSKSNMKKGILALLISTIG 149 (269)
T ss_pred HHHHHHHhhcCCCCCcc--hHHHHHHHHHHHHHHHHHhccccccc---------c----ccccccchhhHHHHHHHHHHH
Confidence 78899999999988766 00112346777788888777321110 0 012345677899999999999
Q ss_pred HHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccccCcchHHHHHHHHhhccchheeeeeeeeccc
Q 022016 193 WSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKR 272 (304)
Q Consensus 193 ~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~ 272 (304)
|..|....|.. +. |+.....-+...-.+...++....+ +. .+. +..|.- +..|+ .-.++..+|..+.++.
T Consensus 150 y~~Y~~~~~~~--~~-~~~~~~lPqaiGm~i~a~i~~~~~~-~~-~~~---k~~~~n-il~G~-~w~ignl~~~is~~~~ 219 (269)
T PF06800_consen 150 YWIYSVIPKAF--HV-SGWSAFLPQAIGMLIGAFIFNLFSK-KP-FFE---KKSWKN-ILTGL-IWGIGNLFYLISAQKN 219 (269)
T ss_pred HHHHHHHHHhc--CC-ChhHhHHHHHHHHHHHHHHHhhccc-cc-ccc---cchHHh-hHHHH-HHHHHHHHHHHhHHhc
Confidence 99999997764 23 3554444332222222222222121 11 111 112222 22333 2345667788999999
Q ss_pred CceeeeeccchHHHHHHHHHHHHhCCcc
Q 022016 273 GPLFSAMFNPLCTVIVTILAALLLHEEI 300 (304)
Q Consensus 273 ~a~~~s~~~~l~pv~a~l~~~~~~~e~~ 300 (304)
|.+.+=.+.-+.++++.+.+.+++||+=
T Consensus 220 G~a~af~lSQ~~vvIStlgGI~il~E~K 247 (269)
T PF06800_consen 220 GVATAFTLSQLGVVISTLGGIFILKEKK 247 (269)
T ss_pred cchhhhhHHhHHHHHHHhhhheEEEecC
Confidence 9999999999999999999999999973
No 41
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.79 E-value=2e-07 Score=75.12 Aligned_cols=134 Identities=21% Similarity=0.267 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHhhhccccCC--------CC--CHHH
Q 022016 9 PAMAMLALQFSYAVVALSTRAALLQ------GMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSS--------SM--GLRS 72 (304)
Q Consensus 9 g~~~~l~~~~~~~~~~~~~k~~~~~------~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~--------~~--~~~~ 72 (304)
|.++++.+.++.+...+..|...++ +.++.+...+-...+.+.+.+.....+..+..+ +. +.+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 4678899999999999999998776 599999999999999999999887765533100 01 2244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhh
Q 022016 73 FSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAIS 149 (304)
Q Consensus 73 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~l 149 (304)
+......|++. ...+...+..++++++...++....-.+.+.++++++++|+++.. ++.|+.+++.|.++
T Consensus 81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence 55555666666 788999999999999999999999999999999999999999999 99999999999875
No 42
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.79 E-value=1e-06 Score=76.76 Aligned_cols=243 Identities=14% Similarity=0.114 Sum_probs=180.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHH
Q 022016 36 NPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITF 115 (304)
Q Consensus 36 ~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~ 115 (304)
++....+.+-+.+.++-..+..++++ + ...++.+..+...++.+ .+...|.++|++|.+=..-.+--+.--+=++
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~~~k~-~---~~~~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm 124 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLKWWKK-E---LSGVAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPVM 124 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccc-c---CCCCCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHHH
Confidence 46677777777777776555443222 2 23467788888889888 8999999999999996655555555555667
Q ss_pred HHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccCCCCCchHHHHHHHHHHHHHHHH
Q 022016 116 VMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSL 195 (304)
Q Consensus 116 lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~ 195 (304)
++..++.|.|.+.. +.+-..+.-+|+-+..+....+ .....+.++...|..+....-..=++
T Consensus 125 lmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~------------s~~~~g~~ns~~G~~Ll~~~L~fDgf 186 (327)
T KOG1581|consen 125 LMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD------------SSSKSGRENSPIGILLLFGYLLFDGF 186 (327)
T ss_pred HHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC------------CccccCCCCchHhHHHHHHHHHHHhh
Confidence 89999999999998 9988888888888877532111 00123456788999999888888888
Q ss_pred HHHhHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHHhcCCCcc--cccccCcchHHHHHHHHhhccchheeeeeeeeccc
Q 022016 196 WLILQVPVSASYP-DHLSLSAWMCFLATLQSATFAIFTEPDPE--AWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKR 272 (304)
Q Consensus 196 ~~~~~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~ 272 (304)
.+..++++.+++. ++.+...+..+++.+......+..+...+ .+-..++..++-++.... +..+++.+.++-+++-
T Consensus 187 Tn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~TI~~F 265 (327)
T KOG1581|consen 187 TNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFYTIERF 265 (327)
T ss_pred HHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheehhhHhhc
Confidence 8999999887654 68888888888888877666332221111 222234445555555555 5668899999999999
Q ss_pred CceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016 273 GPLFSAMFNPLCTVIVTILAALLLHEEIYT 302 (304)
Q Consensus 273 ~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~ 302 (304)
|+-..+.++.+.=++++.++.+.+|.++++
T Consensus 266 Gslt~t~I~ttRk~~si~lS~i~f~h~~s~ 295 (327)
T KOG1581|consen 266 GSLTFTTIMTTRKMVSIMLSCIVFGHPLSS 295 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCccch
Confidence 999999999999999999999999999875
No 43
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.69 E-value=6.5e-07 Score=82.26 Aligned_cols=140 Identities=11% Similarity=0.113 Sum_probs=102.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHhhhccccC----------CCCC
Q 022016 6 DYKPAMAMLALQFSYAVVALSTRAALLQ------GMNPRVFVVYRQAIATLFMAPMAYLSSRKYKS----------SSMG 69 (304)
Q Consensus 6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~------~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~----------~~~~ 69 (304)
+..|.++++++.+.|+...+..|...++ ..++.....+-...++++++|+....+..+.. ....
T Consensus 192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~ 271 (350)
T PTZ00343 192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT 271 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence 3569999999999999999999998764 25677777777888988888877644321100 0001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhh
Q 022016 70 LRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAIS 149 (304)
Q Consensus 70 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~l 149 (304)
........+.+.+...+.+.+.|.+++++++.+.++..++.|++++++++++++|+++.. +++|.++++.|+++
T Consensus 272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~l 345 (350)
T PTZ00343 272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALL 345 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHH
Confidence 111111222222222333334446999999999999999999999999999999999999 99999999999987
Q ss_pred hh
Q 022016 150 MA 151 (304)
Q Consensus 150 i~ 151 (304)
..
T Consensus 346 Ys 347 (350)
T PTZ00343 346 YS 347 (350)
T ss_pred Hh
Confidence 65
No 44
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.67 E-value=9.7e-07 Score=78.20 Aligned_cols=133 Identities=14% Similarity=0.242 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHH
Q 022016 7 YKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVV-YRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVT 85 (304)
Q Consensus 7 ~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~-~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 85 (304)
..|..+.+.+++.|+...+..|... + .++..... +..........+... .... ...+.+.+......|+++.+
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~g~~~~~ 226 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLLLLLFFL--SGFG--APILSRAWLLLLYLGVFSTG 226 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHHHHHHHh--cccc--ccCCHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999877 3 67777776 444422222222221 1111 22457888889999999977
Q ss_pred HHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016 86 INQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMA 151 (304)
Q Consensus 86 ~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~ 151 (304)
..+.++++++++.+++.++.+..+.|++..++++++++|+++.+ ++.|..+.+.|+.+..
T Consensus 227 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~ 286 (292)
T COG0697 227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999 9999999999999887
No 45
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.66 E-value=4.5e-07 Score=81.17 Aligned_cols=129 Identities=14% Similarity=0.066 Sum_probs=104.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH----HHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHH
Q 022016 6 DYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQA----IATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIAL 81 (304)
Q Consensus 6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~----~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 81 (304)
..+|++..+++++.++...+..|.. + .||....+.... .+.+++.+. ++ .+ +. +.+.....+..|+
T Consensus 150 ~~~Gi~~~l~sg~~y~~~~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~~~~~~----~~-~~-~~-~~~~~~~~~~~Gi 219 (290)
T TIGR00776 150 FKKGILLLLMSTIGYLVYVVVAKAF--G-VDGLSVLLPQAIGMVIGGIIFNLGH----IL-AK-PL-KKYAILLNILPGL 219 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHc--C-CCcceehhHHHHHHHHHHHHHHHHH----hc-cc-ch-HHHHHHHHHHHHH
Confidence 3689999999999999999999975 3 899988655555 333333332 11 12 22 3445555556888
Q ss_pred HHHHHHHHHHHHHhh-ccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhh----hHHHHHHHhHhhhh
Q 022016 82 LGVTINQNTYFEGLY-LASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKI----LGTIFCVGGAISMA 151 (304)
Q Consensus 82 ~~~~~~~~~~~~al~-~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~----~g~~l~~~G~~li~ 151 (304)
+ ..+++.+|+.+.+ +.+++.++.+.+..|+...+.+++++||+.+++ ++ +|.++.+.|+.++.
T Consensus 220 ~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~------~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 220 M-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR------EMIAISVGIILIIIAANILG 287 (290)
T ss_pred H-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc------eeehhHHHHHHHHHHHHHHh
Confidence 8 5999999999999 999999999999999999999999999999999 99 99999999998876
No 46
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.62 E-value=1e-06 Score=79.12 Aligned_cols=133 Identities=14% Similarity=0.160 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022016 11 MAMLALQFSYAVVALSTRAALLQG-MNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQN 89 (304)
Q Consensus 11 ~~~l~~~~~~~~~~~~~k~~~~~~-~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 89 (304)
...+.++++|+...+..|...++. .++.....+-...+.....+.. ..........+...+......|.. ..+.+.
T Consensus 152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~-t~i~~~ 228 (296)
T PRK15430 152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA--DSSTSHMGQNPMSLNLLLIAAGIV-TTVPLL 228 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc--cCCcccccCCcHHHHHHHHHHHHH-HHHHHH
Confidence 356778999999999999864321 2223333344434433322221 111000011122223344445554 478999
Q ss_pred HHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 90 TYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 90 ~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
++++++++.+++.++.+.+..|++..++++++++|+++.. ++.|..+.+.|+.++..
T Consensus 229 ~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 229 CFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 99999999999988873
No 47
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.59 E-value=7.4e-06 Score=74.26 Aligned_cols=280 Identities=13% Similarity=0.019 Sum_probs=161.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH--Hhhhc---cccCCCCCHHHHHHHHHH
Q 022016 5 RDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMA--YLSSR---KYKSSSMGLRSFSLIFFI 79 (304)
Q Consensus 5 ~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~--~~~~~---~~~~~~~~~~~~~~~~~~ 79 (304)
+...|++..+++.++||..++..|.. ++ -+ .+....-..+-.-++.|+. .+..+ ... ...+.+.+...++.
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~~-k~-w~-wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~-~~~~~~~~~~~~l~ 79 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKKV-KK-WS-WETMWSVGGIFSWLILPWLIAALLLPDFWAYY-SSFSGSTLLPVFLF 79 (345)
T ss_pred hhHHHHHHHHHHHHHhhccccccccc-CC-Cc-hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HhcCHHHHHHHHHH
Confidence 46789999999999999999999993 22 22 2222110111111111110 01001 111 23467778888888
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhhhcc-hhHHHHHHHHHHHhcccc---cccccccchhhhHHHHHHHhHhhhhhccC
Q 022016 80 ALLGVTINQNTYFEGLYLASSSMASAMGN-LIPAITFVMASIVGLEKI---DLGSVRSVAKILGTIFCVGGAISMALLRG 155 (304)
Q Consensus 80 g~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~Pi~~~lla~l~~~er~---~~~~~~~~~~~~g~~l~~~G~~li~~~~~ 155 (304)
|++- .+++..++.++++.+++.+..+.. ++-+...++..++++|=. +.. ....-..|+++.++|+++......
T Consensus 80 G~~W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 80 GALW-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHH-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccc--hHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8886 999999999999999999988885 777889999999988643 222 122367788888889888884221
Q ss_pred CccccccCCccccccccCCCCCchHHHHHHHHHHHHHHHHHH-------HhHHHHhhcCCCchhHHHHHH---HHHHHHH
Q 022016 156 PKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWL-------ILQVPVSASYPDHLSLSAWMC---FLATLQS 225 (304)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~-------~~~k~~~~~~~~~~~~~~~~~---~~~~l~~ 225 (304)
.. ++++..+.+.+.+..+|.+.++++++.++.|. ...+...+...++.....-+. +.|....
T Consensus 157 ~k--------~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~ 228 (345)
T PRK13499 157 LK--------ERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAIT 228 (345)
T ss_pred hc--------ccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHH
Confidence 11 11111001234567899999999999999999 444432111113333333332 2444433
Q ss_pred HHH-HHh---cCCCcc--cccccC----cchHHHHHHHHhhccchheeeeeeeecccCceeeee----ccchHHHHHHHH
Q 022016 226 ATF-AIF---TEPDPE--AWNLHS----SLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAM----FNPLCTVIVTIL 291 (304)
Q Consensus 226 ~~~-~~~---~~~~~~--~~~~~~----~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~----~~~l~pv~a~l~ 291 (304)
-.. ... ...+.. .....+ ..........|+ .=.+++..|..+.++.+...... .+.+..+++.+.
T Consensus 229 n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Viistlw 307 (345)
T PRK13499 229 NLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLW 307 (345)
T ss_pred HHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHh
Confidence 321 111 111111 011111 112121122232 34566677777777776554433 336777899999
Q ss_pred HHHHhCCccc
Q 022016 292 AALLLHEEIY 301 (304)
Q Consensus 292 ~~~~~~e~~~ 301 (304)
+. ++||.=+
T Consensus 308 Gi-~lkE~K~ 316 (345)
T PRK13499 308 GL-VLKEWKG 316 (345)
T ss_pred hh-hhhhccC
Confidence 98 4899643
No 48
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.54 E-value=6.9e-07 Score=68.07 Aligned_cols=70 Identities=17% Similarity=0.122 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016 76 IFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMA 151 (304)
Q Consensus 76 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~ 151 (304)
....++.+++....++..++++.|.+.+..+.++.|+++.+++++++|||++++ |++|+.+.+.|++++.
T Consensus 39 ~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 39 WLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 334555777889999999999999999999999999999999999999999999 9999999999998876
No 49
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.53 E-value=3e-06 Score=76.68 Aligned_cols=142 Identities=12% Similarity=-0.034 Sum_probs=114.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCC--CCHHHHHHHHHHHH
Q 022016 4 LRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSS--MGLRSFSLIFFIAL 81 (304)
Q Consensus 4 ~~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~ 81 (304)
.++.+|-++++.+++++|.+.+..|...++ .|+.++..+--+.+.++..+.....+++.. .+ .+.+....++..++
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i-~~~~w~~~~~~~~v~~~~ 241 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGI-ESIHWTSQVIGLLVGYAL 241 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhh-hccCCChhhHHHHHHHHH
Confidence 467899999999999999999999999876 899999888888888888776666565554 32 34444443333333
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhcc
Q 022016 82 LGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLR 154 (304)
Q Consensus 82 ~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~ 154 (304)
..+..+.+.-..+++++++...+=..+..++..+...+++|+++++. .++|.++.++|.++....+
T Consensus 242 -~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 242 -CLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNLAE 307 (334)
T ss_pred -HHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEccC
Confidence 34666677778899999988888778999999999999999999998 9999999999999998643
No 50
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.46 E-value=2.1e-07 Score=81.74 Aligned_cols=119 Identities=9% Similarity=0.107 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCc---ccccccCcch-HHHHHHHHhh
Q 022016 181 LGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDP---EAWNLHSSLE-IFCCFFSGAI 256 (304)
Q Consensus 181 ~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~g~~ 256 (304)
+|..+.+.++++|+...+..|. ..+. +|.++..++++++.+.+.+......+.. ..++..+..+ +......|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 5889999999999999999998 4567 5999999999999888766554332110 1111111222 3344455553
Q ss_pred ccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016 257 GSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT 302 (304)
Q Consensus 257 ~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~ 302 (304)
..+.+.++++++++++++.++.+.++.|+++.++++++++|+++.
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~ 124 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISR 124 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 667889999999999999999999999999999999999999985
No 51
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.43 E-value=7e-06 Score=64.15 Aligned_cols=118 Identities=19% Similarity=0.112 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHH
Q 022016 8 KPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTIN 87 (304)
Q Consensus 8 ~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 87 (304)
++++++++..++-+...++.|...++ .++.+..... . ..... . . . | ...+..|+...+++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~~--~----~~~~~-~--~--~-p-------~~~i~lgl~~~~la 61 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWDF--I----AALLA-F--G--L-A-------LRAVLLGLAGYALS 61 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhHH--H----HHHHH-H--h--c-c-------HHHHHHHHHHHHHH
Confidence 46778888888889999999999865 5544322211 0 00000 0 0 0 1 22567888888999
Q ss_pred HHHHHHHhhccccchhhhhcchhHHHHHHHHHH--HhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016 88 QNTYFEGLYLASSSMASAMGNLIPAITFVMASI--VGLEKIDLGSVRSVAKILGTIFCVGGAISMA 151 (304)
Q Consensus 88 ~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l--~~~er~~~~~~~~~~~~~g~~l~~~G~~li~ 151 (304)
+.++.+++++.|++.+..+.+..+.++.+.++. ++||+++++ |++|+.+.+.|++++.
T Consensus 62 ~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 62 MLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence 999999999999999999999999888888885 799999999 9999999999999987
No 52
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.43 E-value=6.3e-07 Score=73.34 Aligned_cols=182 Identities=17% Similarity=0.118 Sum_probs=122.8
Q ss_pred HHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCC
Q 022016 85 TINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFL 164 (304)
Q Consensus 85 ~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~ 164 (304)
...+..|..+++..++++++.+.....-|+.++++++++||+.-. ++++.++++.|++++...
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~----------- 126 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYA----------- 126 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEec-----------
Confidence 567889999999999999999999999999999999999999998 999999999999999841
Q ss_pred ccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHH----hcCCCccccc
Q 022016 165 PEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAI----FTEPDPEAWN 240 (304)
Q Consensus 165 ~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~ 240 (304)
+....+...|..++..++++-|+|-+.-|+...+. +--....+....|..-+..... ......+.++
T Consensus 127 --------DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnA-n~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~q 197 (290)
T KOG4314|consen 127 --------DNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNA-NFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQ 197 (290)
T ss_pred --------cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccC-cchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHH
Confidence 13455678999999999999999999999998765 3334444444444433332221 0111122222
Q ss_pred ccCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHH
Q 022016 241 LHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAA 293 (304)
Q Consensus 241 ~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~ 293 (304)
.-....|..+...+...... ..+.+.++....+-..|.=+....+--..++.
T Consensus 198 sFA~~PWG~l~G~A~L~lAF-N~~iN~GiaL~~PilISiG~l~~iP~NaaiDi 249 (290)
T KOG4314|consen 198 SFAAAPWGCLCGAAGLSLAF-NFLINFGIALLNPILISIGMLCGIPGNAAIDI 249 (290)
T ss_pred HHhhCCchhhhhHHHHHHHH-hhheeehhhhhchhhheehheecCcchhHHHH
Confidence 11122466555444433222 23345666666666555544444444444443
No 53
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.39 E-value=5.7e-06 Score=70.43 Aligned_cols=136 Identities=14% Similarity=0.061 Sum_probs=115.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHH
Q 022016 6 DYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVT 85 (304)
Q Consensus 6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 85 (304)
+..|..+++.+..+|+..-+..|..-+. .+.-.-+..-+.+++++.+|+-.-. ... .-.++.-....+..+++...
T Consensus 146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~--ag~-~l~~p~ll~laLgvavlSSa 221 (292)
T COG5006 146 DPVGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQ--AGP-ALFSPSLLPLALGVAVLSSA 221 (292)
T ss_pred CHHHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhh--cch-hhcChHHHHHHHHHHHHhcc
Confidence 5578999999999999999999998754 6667777788899999999987532 222 22456677778889999999
Q ss_pred HHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016 86 INQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMA 151 (304)
Q Consensus 86 ~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~ 151 (304)
+.+.+-..++++.|...-+++.++.|.+..+.++++++|+++.. ||.++...+.+..=..
T Consensus 222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsaG~~ 281 (292)
T COG5006 222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASAGST 281 (292)
T ss_pred cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999 9999999888776444
No 54
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.36 E-value=3.5e-06 Score=75.54 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=92.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHH-HHHHHHHHHH
Q 022016 5 RDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSF-SLIFFIALLG 83 (304)
Q Consensus 5 ~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~ 83 (304)
+...|...++.++++-+....+.|....+ .+. +..+..+-.++.+ ...+..|+..
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~-----------------------~~~~~~~~~~~~l~~~~W~~G~~~ 59 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLR-LPR-----------------------GSLRAGSGGRSYLRRPLWWIGLLL 59 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc-----------------------ccccccchhhHHHhhHHHHHHHHH
Confidence 46678999999999999999999987643 100 0000000011111 2345677777
Q ss_pred HHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhc
Q 022016 84 VTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALL 153 (304)
Q Consensus 84 ~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~ 153 (304)
+.++..+.+.|+.+.|++..+.+....-++..+++..++|||++++ ++.|+.+++.|..+++..
T Consensus 60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIF 123 (300)
T ss_pred HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEe
Confidence 7889999999999999999999999999999999999999999999 999999999999988753
No 55
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=2.8e-05 Score=66.97 Aligned_cols=240 Identities=15% Similarity=0.105 Sum_probs=160.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhcccc---CCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchh
Q 022016 36 NPRVFVVYRQAIATLFMAPMAYLSSRKYK---SSS--MGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLI 110 (304)
Q Consensus 36 ~p~~~~~~R~~~a~~~l~~~~~~~~~~~~---~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~ 110 (304)
.|..+..+++++...+...+-....+-+. .++ ++.+..+...-+.+.- ...-.+-++.++|.+++--.+==++.
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL~yVgVaFYyvgRsLt 138 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCLKYVGVAFYYVGRSLT 138 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceehhhcceEEEEeccchh
Confidence 47778888888877777665544333211 122 2323223222223322 33444566778888888777777888
Q ss_pred HHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccCCCCCchHHHHHHHHHHH
Q 022016 111 PAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASA 190 (304)
Q Consensus 111 Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~ 190 (304)
.+|+.++++.++|+|-+.. ...+..+.+.|--+=+ +.| +..+.-...|.+++..++
T Consensus 139 tvFtVlLtyvllkqkTs~~------~~~~C~lIi~GF~lGv---dqE---------------~~~~~ls~~GvifGVlaS 194 (347)
T KOG1442|consen 139 TVFTVLLTYVLLKQKTSFF------ALGCCLLIILGFGLGV---DQE---------------GSTGTLSWIGVIFGVLAS 194 (347)
T ss_pred hhHHHHhHHhhcccccccc------cceeehhheehheecc---ccc---------------cccCccchhhhHHHHHHH
Confidence 9999999999999999997 6666666666654444 221 123445669999999999
Q ss_pred HHHHHHHHhHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHhcCCCcc---ccccc-CcchHHHHHHHHhhccchheeee
Q 022016 191 CCWSLWLILQVPVSASYPD-HLSLSAWMCFLATLQSATFAIFTEPDPE---AWNLH-SSLEIFCCFFSGAIGSGVSFCVQ 265 (304)
Q Consensus 191 ~~~a~~~~~~k~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~g~~~~~~~~~l~ 265 (304)
++-|+..+..||......| -...+.|....+.+++.|...+-+ +.+ .++.. +...|..+...|+++-.++|.-
T Consensus 195 l~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lng-e~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvT- 272 (347)
T KOG1442|consen 195 LAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNG-EFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVT- 272 (347)
T ss_pred HHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcc-hHHHHcCcccchHHHHHHHHHHHHHHHHHhhhee-
Confidence 9999999999987665443 345566778888888888777443 322 22222 3346777778888777666543
Q ss_pred eeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016 266 AWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT 302 (304)
Q Consensus 266 ~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~ 302 (304)
.+=+|..+|-.-+.-..-.-..-.+++..+++|.-+.
T Consensus 273 g~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~ 309 (347)
T KOG1442|consen 273 GWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSG 309 (347)
T ss_pred eEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhh
Confidence 4667778887777777777777788888888887654
No 56
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.22 E-value=1.8e-05 Score=66.14 Aligned_cols=252 Identities=13% Similarity=0.140 Sum_probs=166.6
Q ss_pred HHHHHHHhc-CCChHH-HHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 022016 25 LSTRAALLQ-GMNPRV-FVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSM 102 (304)
Q Consensus 25 ~~~k~~~~~-~~~p~~-~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~ 102 (304)
+..|+.+.. |++... +.+.+..++.+.+..+-.. +--+. +..+.|.| +..+++- ...-..--.+++|.++..
T Consensus 23 ltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l-~~~~f-R~t~aK~W---fpiSfLL-v~MIyt~SKsLqyL~vpi 96 (309)
T COG5070 23 LTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFL-RLVEF-RLTKAKKW---FPISFLL-VVMIYTSSKSLQYLAVPI 96 (309)
T ss_pred HhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHH-hHhhe-ehhhhhhh---cCHHHHH-HHHHHhcccceeeeeeeH
Confidence 445665542 344433 3445555555544443221 11111 11122333 2334443 444556678999999999
Q ss_pred hhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccCCCCCchHHH
Q 022016 103 ASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLG 182 (304)
Q Consensus 103 a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 182 (304)
-+++-++.-+.++....++++.|++.. +..+-++-++..+.-. ..+.... .-..+..+-|
T Consensus 97 YTiFKNltII~iAygEvl~Fgg~vtsl------~l~SFilMvlSS~va~---w~D~q~~-----------~~~~~~lN~G 156 (309)
T COG5070 97 YTIFKNLTIILIAYGEVLFFGGRVTSL------ELLSFILMVLSSVVAT---WGDQQAS-----------AFKAQILNPG 156 (309)
T ss_pred HHHhccceeehhHhhHHHHhcCccchh------hHHHHHHHHHHHHHhc---cchhhHH-----------HHHhcccCCc
Confidence 999999999999999999999999998 8888887777766655 2111000 0012345578
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHHhcCCCccc-ccc-cCcchHHHHHHHHhhccc
Q 022016 183 CLFLFASACCWSLWLILQVPVSASYP-DHLSLSAWMCFLATLQSATFAIFTEPDPEA-WNL-HSSLEIFCCFFSGAIGSG 259 (304)
Q Consensus 183 ~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~g~~~~~ 259 (304)
.+|+...+++-+.|....|+..+-.. .......|..+.+...+..+.++.+...++ ..- .+.....++...|++.-+
T Consensus 157 Y~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svg 236 (309)
T COG5070 157 YLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVG 236 (309)
T ss_pred eEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhh
Confidence 88888999999999888888754421 366778899999999998888877632111 111 112244556667775555
Q ss_pred hheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016 260 VSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303 (304)
Q Consensus 260 ~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~ 303 (304)
+. .+-.|+++..+.+.-+++..+.-.-..+-|.++++|+.+.+
T Consensus 237 iS-y~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~ 279 (309)
T COG5070 237 IS-YCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFL 279 (309)
T ss_pred hh-hccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHH
Confidence 54 46679999999999999999999999999999999998754
No 57
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.20 E-value=0.0001 Score=63.82 Aligned_cols=195 Identities=14% Similarity=0.118 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHh---cCC----ChHHHHHHHHHHHHHHHHHHHHhhhccccC---C-------CC--CHHHHHHHH
Q 022016 17 QFSYAVVALSTRAALL---QGM----NPRVFVVYRQAIATLFMAPMAYLSSRKYKS---S-------SM--GLRSFSLIF 77 (304)
Q Consensus 17 ~~~~~~~~~~~k~~~~---~~~----~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~---~-------~~--~~~~~~~~~ 77 (304)
.+.=+.+-+++|++-+ +|- .|.....--++.=.++++.+..++.+...+ . +. +.+. ...+
T Consensus 12 vvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p-~lfl 90 (372)
T KOG3912|consen 12 VVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP-VLFL 90 (372)
T ss_pred hhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCc-ceec
Confidence 3344566778888643 222 255555555555556666655554443221 0 00 1111 1233
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCc
Q 022016 78 FIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPK 157 (304)
Q Consensus 78 ~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~ 157 (304)
..+++. ..+..+.|.|+++++++.-+++=...-+|+-+++.-+++.+++-+ ||+|+.....|++++-. .+
T Consensus 91 ~Pal~D-i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~---~d 160 (372)
T KOG3912|consen 91 PPALCD-IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGS---LD 160 (372)
T ss_pred ChHHHH-HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeee---ee
Confidence 366666 677888899999999999999999999999999999999999999 99999999999998873 11
Q ss_pred cccccCCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHH
Q 022016 158 LLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYP-DHLSLSAWMCFLATLQSATFAI 230 (304)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 230 (304)
.. . ..|+ .++-+.-..|+++.+.+-+.-|+..+.-.|..++.. +|.....|.-++|.+.+-+.++
T Consensus 161 ~~-~---~~~p----~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i 226 (372)
T KOG3912|consen 161 VH-L---VTDP----YTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAI 226 (372)
T ss_pred cc-c---ccCC----ccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHH
Confidence 11 0 0111 123356779999999999999999999988877653 6999999999998655544443
No 58
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.06 E-value=4.8e-05 Score=65.29 Aligned_cols=195 Identities=6% Similarity=-0.029 Sum_probs=112.6
Q ss_pred cchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCcccc-----cc-CCccccccccC
Q 022016 100 SSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLN-----TE-FLPEKSFLFRS 173 (304)
Q Consensus 100 ~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~-----~~-~~~~~~~~~~~ 173 (304)
.......-+..|+++.+..+...+||.+.. |+++..+...|++.....+.+.... .. ....++..+..
T Consensus 4 vPa~~~~~s~~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~ 77 (222)
T TIGR00803 4 VPIHIIFKQNNLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKT 77 (222)
T ss_pred ccchHHHHhcchHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccc
Confidence 344556667888888888888889998877 8888888888887544311110000 00 00000000001
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHH-HHHHHHHHHHHHhcCCCc-ccccccCcchHHHHH
Q 022016 174 SGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMC-FLATLQSATFAIFTEPDP-EAWNLHSSLEIFCCF 251 (304)
Q Consensus 174 ~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 251 (304)
...++...|....+.+.++-+...++.++..++.+........+. +.+.+...........+. ..+... ..+....
T Consensus 78 ~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 155 (222)
T TIGR00803 78 LMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFF--IGYPTAV 155 (222)
T ss_pred cccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcc--cCCchHH
Confidence 122356678877888888878888888887665432222222222 222222111111111111 111100 0111111
Q ss_pred HHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016 252 FSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT 302 (304)
Q Consensus 252 ~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~ 302 (304)
+.-++...++..+..+.+|+.++...+....++++.+.+++.+++||+++.
T Consensus 156 ~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~ 206 (222)
T TIGR00803 156 WIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISS 206 (222)
T ss_pred HHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccH
Confidence 122234556677899999999999999999999999999999999999875
No 59
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.01 E-value=1e-05 Score=64.99 Aligned_cols=120 Identities=17% Similarity=0.139 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhc------CCCchhHHHHHHHHHHHHHHHHHHhcCCCcc-----cccc---c-Ccch
Q 022016 182 GCLFLFASACCWSLWLILQVPVSAS------YPDHLSLSAWMCFLATLQSATFAIFTEPDPE-----AWNL---H-SSLE 246 (304)
Q Consensus 182 G~~~~l~a~~~~a~~~~~~k~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~---~-~~~~ 246 (304)
|.++++.+.++.|++.++.|+..++ ..|+.....+....+.+.+.+.....|.... .... . ++..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6789999999999999999998766 2279999999999999999998887764331 1110 0 2234
Q ss_pred HHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016 247 IFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT 302 (304)
Q Consensus 247 ~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~ 302 (304)
+..++..|+. ...-....+..+++.++...++...+..+..++.+++++||++|.
T Consensus 81 ~~~~~~~~~~-~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~ 135 (153)
T PF03151_consen 81 IFLLILSGLL-AFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITP 135 (153)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCH
Confidence 5555555553 344556667999999999999999999999999999999999885
No 60
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.85 E-value=1.1e-06 Score=74.42 Aligned_cols=258 Identities=16% Similarity=0.108 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022016 9 PAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQ 88 (304)
Q Consensus 9 g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 88 (304)
.++.+++-++.||..+..+... |=+|.+...---+.+.++-+.+.+. .+ |..+.+.+..-++.|++- .+++
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~~-~~----p~~T~~~~iv~~isG~~W-s~GQ 73 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFLF-VS----PELTLTIFIVGFISGAFW-SFGQ 73 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHhee-ec----CccchhhHHHHHHhhhHh-hhhh
Confidence 4677888999999998866553 3467766665555555544444332 22 556777777777777775 9999
Q ss_pred HHHHHHhhccccchhhhhcc-hhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccc
Q 022016 89 NTYFEGLYLASSSMASAMGN-LIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEK 167 (304)
Q Consensus 89 ~~~~~al~~~~~~~a~~i~~-~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~ 167 (304)
...+.|.++.+++.+..+.+ ++-+-+.+++.+.++|=-+.. + .++++...+++.. +-.+.-..+++++
T Consensus 74 ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~------~---~IlG~iAlilivi--G~~lTs~~~~~nk 142 (288)
T COG4975 74 ANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPT------Q---IILGFIALILIVI--GIYLTSKQDRNNK 142 (288)
T ss_pred hhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcch------h---HHHHHHHHHHHHH--hheEeeeeccccc
Confidence 99999999999999999997 555678889999999976654 3 3344444444432 1100000111112
Q ss_pred cccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccccCcchH
Q 022016 168 SFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEI 247 (304)
Q Consensus 168 ~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 247 (304)
+ .++.++.-+|....+.+++.|-.|.++.+...-+.-+.....+..+.++++.+.... .+... .+..|
T Consensus 143 ~----~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~~~----~~~~~----~K~t~ 210 (288)
T COG4975 143 E----EENPSNLKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGFFK----MEKRF----NKYTW 210 (288)
T ss_pred c----ccChHhhhhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhhcc----cccch----HHHHH
Confidence 1 134556779999999999999999999887643322455555555655555443221 11111 11112
Q ss_pred HHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcc
Q 022016 248 FCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEI 300 (304)
Q Consensus 248 ~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~ 300 (304)
.- ...|+ .=+++...+.++.++.+.+..=.+.-+..+++.+=+.++++|+=
T Consensus 211 ~n-ii~G~-~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekK 261 (288)
T COG4975 211 LN-IIPGL-IWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKK 261 (288)
T ss_pred HH-HhhHH-HHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccC
Confidence 21 22222 12345566677777777666655666666777777777777763
No 61
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.81 E-value=0.00038 Score=60.90 Aligned_cols=133 Identities=16% Similarity=0.061 Sum_probs=94.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHH
Q 022016 5 RDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGV 84 (304)
Q Consensus 5 ~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 84 (304)
+..|+++.+++.++.|....++.|.. +++|....+-....-.+....+.... +++. ..|+...-+..|++-
T Consensus 135 ~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~a~i~~~~~-~~~~----~~k~~~~nil~G~~w- 205 (269)
T PF06800_consen 135 NMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIGAFIFNLFS-KKPF----FEKKSWKNILTGLIW- 205 (269)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHHHHHHhhcc-cccc----cccchHHhhHHHHHH-
Confidence 45679999999999999999998883 37887777755443333333333322 2221 233444456677775
Q ss_pred HHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHh
Q 022016 85 TINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAI 148 (304)
Q Consensus 85 ~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~ 148 (304)
..++.+++.|.+..+.+.+-.+..+.++...+.+.+++||+-++++. ...+.|+++.+.|.+
T Consensus 206 ~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~--~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 206 GIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEM--IYTLIGLILIVIGAI 267 (269)
T ss_pred HHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhH--HHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999988711 112344444545544
No 62
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.73 E-value=0.00079 Score=60.61 Aligned_cols=137 Identities=12% Similarity=0.156 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHh--hhcccc---CCCCCHHHHHHHHHHHHH
Q 022016 9 PAMAMLALQFSYAVVALSTRAALL-QGMNPRVFVVYRQAIATLFMAPMAYL--SSRKYK---SSSMGLRSFSLIFFIALL 82 (304)
Q Consensus 9 g~~~~l~~~~~~~~~~~~~k~~~~-~~~~p~~~~~~R~~~a~~~l~~~~~~--~~~~~~---~~~~~~~~~~~~~~~g~~ 82 (304)
|+++++++.++-|...+..+...+ ++.++.+..++-...+.+..++.... .+.... ....++..+...+...+.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999875 35899999999999999988776655 221110 001123445556666666
Q ss_pred HHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 83 GVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 83 ~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
+ .+++.+.+.-.++.++...+++..+--.++.+++..++++++++. ++.|+++.+.|..+-..
T Consensus 235 ~-~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 235 G-ALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYSY 297 (303)
T ss_pred H-HHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHHH
Confidence 6 777788888899999999999999999999999999999999999 99999999999998874
No 63
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.62 E-value=0.0015 Score=51.65 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022016 10 AMAMLALQFSYAVVALSTRAALLQGMN-PRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQ 88 (304)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~k~~~~~~~~-p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 88 (304)
++..+.+...-+....++-...++ .+ |..-.++-+..+.+.+..+....+++.. ++.+.. -++...-|+++ ...-
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~-~~~~~~-p~w~~lGG~lG-~~~V 78 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFILLLIILLITGRPSL-ASLSSV-PWWAYLGGLLG-VFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHhccccc-chhccC-ChHHhccHHHH-HHHH
Confidence 456777788888888888777665 65 9999999999999998887776555433 322222 23445578887 8888
Q ss_pred HHHHHHhhccccchhhhhcchhHH-HHHHHHHH----HhcccccccccccchhhhHHHHHHHhHhh
Q 022016 89 NTYFEGLYLASSSMASAMGNLIPA-ITFVMASI----VGLEKIDLGSVRSVAKILGTIFCVGGAIS 149 (304)
Q Consensus 89 ~~~~~al~~~~~~~a~~i~~~~Pi-~~~lla~l----~~~er~~~~~~~~~~~~~g~~l~~~G~~l 149 (304)
.+......+.+++.+..+.-+--+ ...++.++ .-|+|++++ |++|+.+.+.|+++
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHhC
Confidence 889999999999988888866554 45555554 357888888 99999999999864
No 64
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.48 E-value=0.0048 Score=54.08 Aligned_cols=130 Identities=11% Similarity=0.096 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhcccc-CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 022016 13 MLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYK-SSSMGLRSFSLIFFIALLGVTINQNTY 91 (304)
Q Consensus 13 ~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~ 91 (304)
.+..++.|+..+..=|.. ++|+.+=...-...-.+..+.+..+...... ...-+...+..+...|.+. .+...++
T Consensus 153 al~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vT-avpL~lf 228 (293)
T COG2962 153 ALALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVT-AVPLLLF 228 (293)
T ss_pred HHHHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHH-HHHHHHH
Confidence 455677888888777775 3777777766666666665555544333220 0112467778888889997 9999999
Q ss_pred HHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 92 FEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 92 ~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
..|-+++|-+..+++++..|....+++.++++|+++.- |...-+..-.|.++...
T Consensus 229 ~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~~ 283 (293)
T COG2962 229 AAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFSI 283 (293)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 99999999999988873
No 65
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.44 E-value=0.0075 Score=54.94 Aligned_cols=146 Identities=11% Similarity=-0.053 Sum_probs=97.1
Q ss_pred cchHHHHHHHHHHHHHHHHH-------HHHHHHHhcCCChHHHHHHHHH---HHHHH-HHHHHHhhh-c-ccc----CCC
Q 022016 5 RDYKPAMAMLALQFSYAVVA-------LSTRAALLQGMNPRVFVVYRQA---IATLF-MAPMAYLSS-R-KYK----SSS 67 (304)
Q Consensus 5 ~~~~g~~~~l~~~~~~~~~~-------~~~k~~~~~~~~p~~~~~~R~~---~a~~~-l~~~~~~~~-~-~~~----~~~ 67 (304)
+..||++.++++.++.+... +..+...+.|.++.....-..+ ++..+ .+.++.+.. | ++. .++
T Consensus 171 ~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~ 250 (345)
T PRK13499 171 NLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFS 250 (345)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcc
Confidence 45789999999999999999 7777766667888877766665 33333 333333221 1 111 011
Q ss_pred CCHHHHHH----HHHHHHHHHHHHHHHHHHHhhccccchhhh---hcchhH-HHHHHHHHHHhcccccccccccchhhhH
Q 022016 68 MGLRSFSL----IFFIALLGVTINQNTYFEGLYLASSSMASA---MGNLIP-AITFVMASIVGLEKIDLGSVRSVAKILG 139 (304)
Q Consensus 68 ~~~~~~~~----~~~~g~~~~~~~~~~~~~al~~~~~~~a~~---i~~~~P-i~~~lla~l~~~er~~~~~~~~~~~~~g 139 (304)
.+++.+.+ ..+.|+.- ...+.++..|-...+.+.+.. +....+ ++..+-+. ++||+-+..|.....-+.|
T Consensus 251 ~~~~~~~~n~l~~~l~G~~W-~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G 328 (345)
T PRK13499 251 LAKPLLITNVLLSALAGVMW-YLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLG 328 (345)
T ss_pred ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHH
Confidence 22222222 35556564 888889999999887766655 554555 45555555 6999999666677778999
Q ss_pred HHHHHHhHhhhhh
Q 022016 140 TIFCVGGAISMAL 152 (304)
Q Consensus 140 ~~l~~~G~~li~~ 152 (304)
+++.++|.+++.+
T Consensus 329 ~vliI~g~~lig~ 341 (345)
T PRK13499 329 CVVIILAANIVGL 341 (345)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999875
No 66
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.00012 Score=64.58 Aligned_cols=251 Identities=12% Similarity=0.192 Sum_probs=144.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHH
Q 022016 5 RDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGV 84 (304)
Q Consensus 5 ~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 84 (304)
++.+|...++...+.-|.+..+-|....+ ... -...-.+.+. +.+ +. +.+..|.+.+
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl~r-----------~~~-------~~~ra~~gg~-~yl--~~--~~Ww~G~ltm 74 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGLKR-----------AGA-------SGLRAGEGGY-GYL--KE--PLWWAGMLTM 74 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHHHH-----------Hhh-------hcccccCCCc-chh--hh--HHHHHHHHHH
Confidence 46667778888888888888888887754 111 0000011111 211 22 4556899999
Q ss_pred HHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCC
Q 022016 85 TINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFL 164 (304)
Q Consensus 85 ~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~ 164 (304)
.++...-|.|+.+.|++..+.+..+.-+..++++..++|||+++. -.+|+.++++|..+++. +.|+-..-
T Consensus 75 ~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~-haP~e~~i--- 144 (335)
T KOG2922|consen 75 IVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVI-HAPKEQEI--- 144 (335)
T ss_pred HHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEE-ecCccccc---
Confidence 999999999999999999999999999999999999999999999 99999999999999985 33432110
Q ss_pred ccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHH----------HHHHhcCC
Q 022016 165 PEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSA----------TFAIFTEP 234 (304)
Q Consensus 165 ~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~ 234 (304)
.+.++..+--.+...+.-..+.++ .++.= ....| +++ ....+..|....+.+-.+ .+-....+
T Consensus 145 ~t~~el~~~~~~~~Fliy~~~iil-~~~il--~~~~~---p~~-g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g 217 (335)
T KOG2922|consen 145 ESVEEVWELATEPGFLVYVIIIIL-IVLIL--IFFYA---PRY-GQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSG 217 (335)
T ss_pred ccHHHHHHHhcCccHHHHHHHHHH-HHHHH--heeec---ccc-cccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcC
Confidence 000110000112222222222211 11111 11112 222 122233333333333211 11111111
Q ss_pred CcccccccCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchH-HHHHHHHHHHHhCCc
Q 022016 235 DPEAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLC-TVIVTILAALLLHEE 299 (304)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~-pv~a~l~~~~~~~e~ 299 (304)
+.+ ...+..|..++.... +......-.+++++.-+++.++++.+.. ..++++-+.++|+|-
T Consensus 218 ~~q---l~~~~ty~~~l~~~~-~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew 279 (335)
T KOG2922|consen 218 NNQ---LFYPLTWIFLLVVAT-CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEW 279 (335)
T ss_pred Ccc---cccHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHh
Confidence 221 112234444444433 3334344458999999999998887764 456666777777774
No 67
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.00086 Score=57.93 Aligned_cols=206 Identities=11% Similarity=0.057 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhh
Q 022016 71 RSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISM 150 (304)
Q Consensus 71 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li 150 (304)
..|+.+..++.+. .....+..-++.|.+=..-.++-.+--+=+.+.+.++-+.|-++. +..+..+-.+|.++.
T Consensus 104 iP~rtY~~la~~t-~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~------d~~aA~lm~lGli~F 176 (367)
T KOG1582|consen 104 IPWRTYVILAFLT-VGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVH------DYIAAMLMSLGLIWF 176 (367)
T ss_pred cchhHhhhhHhhh-hhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHH------HHHHHHHHHHHHHhh
Confidence 3366666677775 556677777888877553333444444445678888889998887 999999999999999
Q ss_pred hhccCCccccccCCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCC-CchhHHHHHHHHHHHHHHHHH
Q 022016 151 ALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYP-DHLSLSAWMCFLATLQSATFA 229 (304)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 229 (304)
.+.+. +.+.+.+..|..+.-.|-++-|+-..++.+..+.+| +......+...+|.+......
T Consensus 177 TLADs-----------------~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~m 239 (367)
T KOG1582|consen 177 TLADS-----------------QTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPM 239 (367)
T ss_pred hhccc-----------------ccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHH
Confidence 86321 134556779998888888888998889988887765 455666777778888777666
Q ss_pred HhcCCCcccccc---cCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccc
Q 022016 230 IFTEPDPEAWNL---HSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIY 301 (304)
Q Consensus 230 ~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~ 301 (304)
..++...+.|+. ++.......+..+. .+.++...-..-++..||..++.+....--+++++++++|..++|
T Consensus 240 vlTge~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT 313 (367)
T KOG1582|consen 240 VLTGELFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFT 313 (367)
T ss_pred HhcccchhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchH
Confidence 655543333322 11112233222222 333444444556778899999999999999999999999998876
No 68
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.31 E-value=7.2e-05 Score=57.11 Aligned_cols=86 Identities=13% Similarity=0.230 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccccccCcchHHHHHHHHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHH
Q 022016 216 WMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALL 295 (304)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~ 295 (304)
++..++.+....+.....+..+.++....+.+...+..|+++...++.++.++.++.++ .++++..+.|+++.+++.++
T Consensus 3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~ 81 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF 81 (113)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666655543322111111112345556666776667889999999999995 88899999999999999999
Q ss_pred hCCcccc
Q 022016 296 LHEEIYT 302 (304)
Q Consensus 296 ~~e~~~~ 302 (304)
++|+++.
T Consensus 82 ~~er~~~ 88 (113)
T PF13536_consen 82 FKERLSP 88 (113)
T ss_pred hcCCCCH
Confidence 9999875
No 69
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.30 E-value=0.0011 Score=50.90 Aligned_cols=69 Identities=14% Similarity=0.087 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhhc-chhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 78 FIALLGVTINQNTYFEGLYLASSSMASAMG-NLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 78 ~~g~~~~~~~~~~~~~al~~~~~~~a~~i~-~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
...+..++++..++..++++.|.+.+-.+. ..--+.+.+.+++++||++++. ++.|+.+.+.|++.+-.
T Consensus 34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhc
Confidence 345566688999999999999999998886 5788899999999999999999 99999999999998874
No 70
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.26 E-value=0.00023 Score=55.62 Aligned_cols=102 Identities=17% Similarity=0.044 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccccCcchHHHHHHHHhhccch
Q 022016 181 LGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGSGV 260 (304)
Q Consensus 181 ~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 260 (304)
.|.++.+.+.++-+...++-|+-.++.+ +...... . ... .... . .-...++.|++++++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g-~~~~~~~-~----~~~-~~~~-----~---------~p~~~i~lgl~~~~l 60 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLP-LLSHAWD-F----IAA-LLAF-----G---------LALRAVLLGLAGYAL 60 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCC-CccchhH-H----HHH-HHHH-----h---------ccHHHHHHHHHHHHH
Confidence 4778888998898999999999887764 2221111 0 000 0000 0 011246788889999
Q ss_pred heeeeeeeecccCceeeeeccchHHHHHHHHHHH--HhCCccccC
Q 022016 261 SFCVQAWCISKRGPLFSAMFNPLCTVIVTILAAL--LLHEEIYTG 303 (304)
Q Consensus 261 ~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~--~~~e~~~~~ 303 (304)
++.+|.+++++.|.+.+.++..+.++...+.++. ++||++|+.
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~ 105 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK 105 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 9999999999999999999999999888888885 899999864
No 71
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.26 E-value=0.0011 Score=59.50 Aligned_cols=138 Identities=12% Similarity=0.187 Sum_probs=111.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh---cCCChHHHHHHHHHHHHHHHH-HHHHhhhcccc---CC-CCCHHHHHHHH
Q 022016 6 DYKPAMAMLALQFSYAVVALSTRAALL---QGMNPRVFVVYRQAIATLFMA-PMAYLSSRKYK---SS-SMGLRSFSLIF 77 (304)
Q Consensus 6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~---~~~~p~~~~~~R~~~a~~~l~-~~~~~~~~~~~---~~-~~~~~~~~~~~ 77 (304)
+..|...+..+.+..+.-.++.|..+. +.+|+++...+-.-.+...++ |+....+.... .. ..+.. .....
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~ 239 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILL 239 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHH
Confidence 678999999999999999999999984 349999999999999999988 87765443221 11 22333 33333
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016 78 FIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMA 151 (304)
Q Consensus 78 ~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~ 151 (304)
....+. ...+...|..+.++++-+-++....--..+++.++++++|+.++. +..|..+++.|+++-.
T Consensus 240 ~~sv~~-f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 240 LNSVLA-FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHH-HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence 444554 677888899999999999999999888889999999999999999 9999999999999877
No 72
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.24 E-value=0.0016 Score=49.29 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhhcc-hhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 79 IALLGVTINQNTYFEGLYLASSSMASAMGN-LIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 79 ~g~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
..+.+++.+..++..++++.|.+.+-.+-. ..-+.+.+.+++++||++++. ++.|+.+.+.|++.+-+
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 455666788899999999999999988854 677888999999999999999 99999999999999974
No 73
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.19 E-value=0.0067 Score=45.80 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhhcc-hhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016 81 LLGVTINQNTYFEGLYLASSSMASAMGN-LIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMA 151 (304)
Q Consensus 81 ~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~ 151 (304)
..+..+++.+...++++.|.+.+-.+.. .--+.+.+.+++++||++++. |+.|+.+.+.|++.+-
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence 4445778889999999999999877775 666788999999999999999 9999999999998764
No 74
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.97 E-value=0.0071 Score=54.74 Aligned_cols=142 Identities=15% Similarity=0.194 Sum_probs=112.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHhhh--ccccCCCCCHHHHHHHHHH
Q 022016 5 RDYKPAMAMLALQFSYAVVALSTRAALLQ---GMNPRVFVVYRQAIATLFMAPMAYLSS--RKYKSSSMGLRSFSLIFFI 79 (304)
Q Consensus 5 ~~~~g~~~~l~~~~~~~~~~~~~k~~~~~---~~~p~~~~~~R~~~a~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 79 (304)
+...|-+++++++++||...++.|.=.++ .+|-..+--+--++..++++|...... +.++..-.+..+....+..
T Consensus 244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~ 323 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN 323 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence 45789999999999999999999886543 266677777777777888886554322 2222122245666677788
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 80 ALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 80 g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
++++.++...+|..|+-.+++-.+++-++.+-...++.-.++.+..+++. .++|.+..++|-+++..
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~------~iiGsi~Ifv~Fv~vn~ 390 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSAL------YIIGSIPIFVGFVIVNI 390 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHhheec
Confidence 99999999999999999999999999998777777788888888889998 99999999999999885
No 75
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.97 E-value=0.0037 Score=47.37 Aligned_cols=110 Identities=15% Similarity=0.083 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 022016 14 LALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNTYFE 93 (304)
Q Consensus 14 l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 93 (304)
++.+++||.+.++.|..... .++..-.. |..--.. . . .+++. +. ..+...-.+...|++
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~-~-----------L-----l~n~~-y~-ipf~lNq~GSv~f~~ 60 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIK-F-----------L-----LLNPK-YI-IPFLLNQSGSVLFFL 60 (113)
T ss_pred eeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHH-H-----------H-----HHhHH-HH-HHHHHHHHHHHHHHH
Confidence 45689999999999999864 55544431 2111111 1 0 11122 22 233334678889999
Q ss_pred Hhhccccchhhhhc-chhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhh
Q 022016 94 GLYLASSSMASAMG-NLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISM 150 (304)
Q Consensus 94 al~~~~~~~a~~i~-~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li 150 (304)
.+...+.+.+..+. ++.=++|.+.++++.+|..+++ .++|+.+.+.|+.++
T Consensus 61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC 112 (113)
T ss_pred HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence 99999999999997 6777899999988888888888 999999999998765
No 76
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.91 E-value=0.0054 Score=46.03 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhhcc-hhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016 81 LLGVTINQNTYFEGLYLASSSMASAMGN-LIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMA 151 (304)
Q Consensus 81 ~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~ 151 (304)
+.++..++.+...++++.|.+.+-.+-. .--+.+.+.+++++||++++. ++.|+.+.+.|++.+-
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence 5556788999999999999999877775 777889999999999999999 9999999999999876
No 77
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.0042 Score=46.33 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhhcc-hhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 79 IALLGVTINQNTYFEGLYLASSSMASAMGN-LIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 79 ~g~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
..+.++..++.+.-.++++.|.+.+-.+-. .--+.+.+.++++++||.+.. +++|+.+.+.|++.+-.
T Consensus 35 l~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 35 LTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhhh
Confidence 444555788999999999999999877764 666789999999999999999 99999999999998763
No 78
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=96.86 E-value=0.0038 Score=54.18 Aligned_cols=221 Identities=10% Similarity=0.057 Sum_probs=141.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHH
Q 022016 66 SSMGLRSFSLIFFIALLGVTINQNTYFEGLYLA-SSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCV 144 (304)
Q Consensus 66 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~-~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~ 144 (304)
++++.|++.... .. ++..+.+-++++++- +...=.++=+-.++-+++++|++.|.|-+.+ |..+.++.-
T Consensus 60 ~kiplk~Y~i~V---~m-FF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iT 129 (330)
T KOG1583|consen 60 PKIPLKDYAITV---AM-FFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMIT 129 (330)
T ss_pred CCCchhhhheeh---he-eeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhh
Confidence 555666654322 22 245677778888765 4444445557889999999999999999999 999999999
Q ss_pred HhHhhhhhccCCccccccCCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcCC-CchhHHHHHHHHHHH
Q 022016 145 GGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPVSASYP-DHLSLSAWMCFLATL 223 (304)
Q Consensus 145 ~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~l 223 (304)
+|.++..+.++++... ..+..|+. +...+...+..|+.+...+-+.-|.-.+.+.+.-+++. ++.....|.-+....
T Consensus 130 iGiiIcTl~s~~d~~~-~~~~l~~~-~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP 207 (330)
T KOG1583|consen 130 IGIIICTLFSSKDGRS-KLSGLDSG-SAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLP 207 (330)
T ss_pred hhheeEEeecCcchhh-hhcccccC-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccc
Confidence 9999999876655432 11111111 01134456789998888887777777777777666653 688888888777666
Q ss_pred HHHHHHH-hc-------CCC---cccccccCcchHHHHHHHHhhccchheeee---eeeecccCceeeeeccchHHHHHH
Q 022016 224 QSATFAI-FT-------EPD---PEAWNLHSSLEIFCCFFSGAIGSGVSFCVQ---AWCISKRGPLFSAMFNPLCTVIVT 289 (304)
Q Consensus 224 ~~~~~~~-~~-------~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~---~~~~~~~~a~~~s~~~~l~pv~a~ 289 (304)
.++...- +. ..+ .+.....-|..|..++.-.+ ..|.|- +.--...++-.++.+..+.-.+++
T Consensus 208 ~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L----~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSL 283 (330)
T KOG1583|consen 208 LFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVL----TQYFCIKGVYILTTETSSLTVTLVLTLRKFVSL 283 (330)
T ss_pred hHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHH----HHHHHHHhhhhhhceecceEEEEeeeHHHHHHH
Confidence 5543321 00 000 00011112345555544333 222221 223345566778999999999999
Q ss_pred HHHHHHhCCcccc
Q 022016 290 ILAALLLHEEIYT 302 (304)
Q Consensus 290 l~~~~~~~e~~~~ 302 (304)
+++.+.|++++++
T Consensus 284 l~SiiyF~Npft~ 296 (330)
T KOG1583|consen 284 LFSIIYFENPFTP 296 (330)
T ss_pred hheeeEecCCCCH
Confidence 9999999998875
No 79
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.78 E-value=0.00097 Score=57.53 Aligned_cols=137 Identities=15% Similarity=0.034 Sum_probs=109.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHH
Q 022016 6 DYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVT 85 (304)
Q Consensus 6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 85 (304)
..++..+.+..+..-+..++..|+.-++ .+....+.+-.+++.+.-++.+..-.+... | -.+||+..+..+|+++ +
T Consensus 189 ~~~gt~aai~s~lf~asvyIilR~iGk~-~h~~msvsyf~~i~lV~s~I~~~~ig~~~l-P-~cgkdr~l~~~lGvfg-f 264 (346)
T KOG4510|consen 189 DIPGTVAAISSVLFGASVYIILRYIGKN-AHAIMSVSYFSLITLVVSLIGCASIGAVQL-P-HCGKDRWLFVNLGVFG-F 264 (346)
T ss_pred cCCchHHHHHhHhhhhhHHHHHHHhhcc-ccEEEEehHHHHHHHHHHHHHHhhccceec-C-ccccceEEEEEehhhh-h
Confidence 3456777888888888889999998654 676666666666666655554433333333 3 3678888888999999 8
Q ss_pred HHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 86 INQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 86 ~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
.++.+.-.|++.=-++..+++-++.-++..+.-.++++|-++++ .+.|+++.+...+....
T Consensus 265 igQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~w------s~~Ga~~vvsS~v~~a~ 325 (346)
T KOG4510|consen 265 IGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIW------SWVGAVMVVSSTVWVAL 325 (346)
T ss_pred HHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHH------HhhceeeeehhHHHHHH
Confidence 99999999999999999999999999999999999999999999 99999988888777774
No 80
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=96.69 E-value=0.00048 Score=52.42 Aligned_cols=51 Identities=18% Similarity=0.089 Sum_probs=46.1
Q ss_pred HHhhccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCccccC
Q 022016 253 SGAIGSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYTG 303 (304)
Q Consensus 253 ~g~~~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~~ 303 (304)
.++++.++++.++.+++|+.+.+++.++.++.++.+.+.+++++||++|..
T Consensus 42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~ 92 (111)
T PRK15051 42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR 92 (111)
T ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 444667788999999999999999999999999999999999999999864
No 81
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.60 E-value=0.0067 Score=44.52 Aligned_cols=57 Identities=21% Similarity=0.057 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhhhc-chhHHHHHHHHHHHhcccccccccccchhhhHHHH
Q 022016 80 ALLGVTINQNTYFEGLYLASSSMASAMG-NLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIF 142 (304)
Q Consensus 80 g~~~~~~~~~~~~~al~~~~~~~a~~i~-~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l 142 (304)
.+..++.+..++..++++.|.+.+-.+. .+..+.+.+.+.+++||++++. |+.|+.+
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l 92 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence 4445688899999999999999997665 5888999999999999999999 9999875
No 82
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.49 E-value=0.058 Score=47.06 Aligned_cols=187 Identities=6% Similarity=-0.037 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022016 9 PAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQ 88 (304)
Q Consensus 9 g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 88 (304)
|+++++.+.+++|.+++-.|..- . -|++.+.++-+....+.-+......+. ++ -..+.++-|.+ .+.++
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~-~-gDg~~fQw~~~~~i~~~g~~v~~~~~~----p~----f~p~amlgG~l-W~~gN 69 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFD-T-GDGFFFQWVMCSGIFLVGLVVNLILGF----PP----FYPWAMLGGAL-WATGN 69 (254)
T ss_pred CchhHHHHHHHhcccceeeEecc-C-CCcHHHHHHHHHHHHHHHHHHHHhcCC----Cc----ceeHHHhhhhh-hhcCc
Confidence 46789999999999999999864 3 588887777776666655554443222 21 13444455566 48999
Q ss_pred HHHHHHhhccccchhhhhcchhHHHHH-HHHHH-HhcccccccccccchhhhHHHHHHHhHhhhhhccCCccc-c--ccC
Q 022016 89 NTYFEGLYLASSSMASAMGNLIPAITF-VMASI-VGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLL-N--TEF 163 (304)
Q Consensus 89 ~~~~~al~~~~~~~a~~i~~~~Pi~~~-lla~l-~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~-~--~~~ 163 (304)
.+-.-.++..+.+.+.++-++.-..+- ..+.+ +++++.+.. -..+...+|+++.++|..+...-+.++-. . .++
T Consensus 70 ~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~-~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~ 148 (254)
T PF07857_consen 70 ILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVP-SSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEE 148 (254)
T ss_pred eeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccccccc-chhHHHHHHHHHHHHHHHheeeecCCCCCccccccc
Confidence 999999999999999988887554443 22222 343333221 12355888999999998887653222210 0 000
Q ss_pred -----C--c---cccccccC-------CCCCchHHHHHHHHHHHHHHHHHHHhHHHHhhcC
Q 022016 164 -----L--P---EKSFLFRS-------SGGENWLLGCLFLFASACCWSLWLILQVPVSASY 207 (304)
Q Consensus 164 -----~--~---~~~~~~~~-------~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~ 207 (304)
+ + ++++..++ ++.++...|+.+++++++.|+...+=.....++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~ 209 (254)
T PF07857_consen 149 TPLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHP 209 (254)
T ss_pred cccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence 0 0 00000001 1122578999999999999999887777765553
No 83
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.13 E-value=0.14 Score=40.86 Aligned_cols=137 Identities=10% Similarity=0.011 Sum_probs=85.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHH
Q 022016 6 DYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVT 85 (304)
Q Consensus 6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 85 (304)
.....+..+.+..+-.....++-...+..=+|..-.+..+.++.+.+..+....++++. .+..++.-+|.+.-|.+| .
T Consensus 3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~-~a~~~~~pwW~~~GG~lG-a 80 (150)
T COG3238 3 MYLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPG-LAAVASAPWWAWIGGLLG-A 80 (150)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhhccCCchHHHHccchh-h
Confidence 34566777777777777777777766542349999999999999888887766433333 333344455666777776 5
Q ss_pred HHHHHHHHHhhccccchhhhhcchh-HHHHHHHHHHH-h---cccccccccccchhhhHHHHHHHhHhhh
Q 022016 86 INQNTYFEGLYLASSSMASAMGNLI-PAITFVMASIV-G---LEKIDLGSVRSVAKILGTIFCVGGAISM 150 (304)
Q Consensus 86 ~~~~~~~~al~~~~~~~a~~i~~~~-Pi~~~lla~l~-~---~er~~~~~~~~~~~~~g~~l~~~G~~li 150 (304)
..-........+.+++....+.-.. -+...++..+= + +.++++ .++.|+++.+.|++++
T Consensus 81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~------~r~lgi~L~l~gil~~ 144 (150)
T COG3238 81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNL------PRILGILLVLAGILLA 144 (150)
T ss_pred hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCH------HHHHHHHHHHHHHHHh
Confidence 5555555566666666554444333 33333433331 2 234444 4999999999994443
No 84
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.78 E-value=0.12 Score=45.72 Aligned_cols=141 Identities=9% Similarity=0.046 Sum_probs=110.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhhhcccc---CCCCCHHHHHHHHHHH
Q 022016 5 RDYKPAMAMLALQFSYAVVALSTRAALLQ-GMNPRVFVVYRQAIATLFMAPMAYLSSRKYK---SSSMGLRSFSLIFFIA 80 (304)
Q Consensus 5 ~~~~g~~~~l~~~~~~~~~~~~~k~~~~~-~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~g 80 (304)
+...|+.++..--..=|+.....+...++ ++++.++.+.-++..++.........+.... .-+.+++.++-.++.+
T Consensus 169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s 248 (327)
T KOG1581|consen 169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYS 248 (327)
T ss_pred CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHH
Confidence 34567776666665556666666655543 4999999999999999887776443222111 0234677788888889
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 81 LLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 81 ~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
.++ .+++.+.++-++.-++-.-+.+..+=-++.+.++.+.++.++++. |+.|+.+.+.|..+=.+
T Consensus 249 ~~g-avGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~~~ 313 (327)
T KOG1581|consen 249 TCG-AVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLEIL 313 (327)
T ss_pred Hhh-hhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHHHH
Confidence 998 899999999999999998999999999999999999999999999 99999999999887764
No 85
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.64 E-value=0.053 Score=46.36 Aligned_cols=59 Identities=14% Similarity=-0.045 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhh
Q 022016 85 TINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAIS 149 (304)
Q Consensus 85 ~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~l 149 (304)
..+..+....+++.++..-+....+.++++.+++.++++|+++.. ++.|+.+.+.|+.+
T Consensus 163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~l 221 (222)
T TIGR00803 163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATFL 221 (222)
T ss_pred HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeEe
Confidence 667788999999999999999999999999999999999999999 99999999988653
No 86
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.82 E-value=0.33 Score=41.50 Aligned_cols=137 Identities=9% Similarity=0.060 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhhhcccc---CCCCCHHHHHHHHHHHHHHH
Q 022016 9 PAMAMLALQFSYAVVALSTRAALLQ-GMNPRVFVVYRQAIATLFMAPMAYLSSRKYK---SSSMGLRSFSLIFFIALLGV 84 (304)
Q Consensus 9 g~~~~l~~~~~~~~~~~~~k~~~~~-~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~ 84 (304)
|-++.++.-.+=|.........-.+ .-+..++.+.-++.+.+.+-.-..+.+.-.. ....++..+..+...++.+
T Consensus 173 GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s- 251 (337)
T KOG1580|consen 173 GELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIAS- 251 (337)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHH-
Confidence 3445555555555555554443322 1345566666666666655432222111000 0111345677777888887
Q ss_pred HHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 85 TINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 85 ~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
++++.+.|.-+.+-+|-.-+++..+--.|+++.+.++++.+++.+ ||+|.++.+.|...=..
T Consensus 252 ~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 252 CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTADVV 313 (337)
T ss_pred HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhHhh
Confidence 999999999999999999999999999999999999999999999 99999999999877654
No 87
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.61 E-value=1 Score=40.25 Aligned_cols=139 Identities=10% Similarity=0.127 Sum_probs=101.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhhhccc-----cCCCCCHHHHHHHHHH
Q 022016 6 DYKPAMAMLALQFSYAVVALSTRAALLQ-GMNPRVFVVYRQAIATLFMAPMAYLSSRKY-----KSSSMGLRSFSLIFFI 79 (304)
Q Consensus 6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~-~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 79 (304)
+..|+..+....+.-+...+..|+..+. +.+-..++++..+.+.+.+.......+... ...-.+...+....+.
T Consensus 155 ~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lS 234 (314)
T KOG1444|consen 155 NLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLS 234 (314)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHH
Confidence 3457788888888888888888888764 378888999999999988877765544311 1011123445566677
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHH-HhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 80 ALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASI-VGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 80 g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l-~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
++++ ..-+.+.+...+..++..-++.. +--.+..-++.+ +.++++++. ...|+.+++.|.++-..
T Consensus 235 cv~g-f~isy~s~~ct~~~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~~~------n~~gll~~~~ggv~Y~~ 300 (314)
T KOG1444|consen 235 CVMG-FGISYTSFLCTRVNSATTTTIVG-AKNKLLTYLGGLLFGDKPFTFL------NVIGLLVGFFGGVLYSY 300 (314)
T ss_pred HHHH-HHHHHHHHHHHhhccccceeehh-hhhhHHHHHHHHhcCCceechh------hhHHHHHHhhhhhHHhh
Confidence 7777 56677788899999999888888 555555555555 477888998 99999999999998874
No 88
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=92.42 E-value=0.11 Score=46.70 Aligned_cols=102 Identities=16% Similarity=0.142 Sum_probs=71.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccccCcchHHHHHHHHhh
Q 022016 177 ENWLLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAI 256 (304)
Q Consensus 177 ~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 256 (304)
.++.+|..+++.++++.+....++|+...+.+ ....- + .....+......|+. |..
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~-~~~~~------------------~-~~~~~~~l~~~~W~~----G~~ 58 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLP-RGSLR------------------A-GSGGRSYLRRPLWWI----GLL 58 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccc------------------c-cchhhHHHhhHHHHH----HHH
Confidence 45789999999999999999999999866653 10000 0 000000000012332 222
Q ss_pred ccchheeeeeeeecccCceeeeeccchHHHHHHHHHHHHhCCcccc
Q 022016 257 GSGVSFCVQAWCISKRGPLFSAMFNPLCTVIVTILAALLLHEEIYT 302 (304)
Q Consensus 257 ~~~~~~~l~~~~~~~~~a~~~s~~~~l~pv~a~l~~~~~~~e~~~~ 302 (304)
...++..+...++...+++.++++..+..++..+++..+++|+++.
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~ 104 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTR 104 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchH
Confidence 3345556677888999999999999999999999999999999875
No 89
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=92.41 E-value=3.2 Score=36.13 Aligned_cols=129 Identities=16% Similarity=0.049 Sum_probs=83.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHhhhccccCCCC-CHHHHHHHHHHHHHH
Q 022016 6 DYKPAMAMLALQFSYAVVALSTRAALLQG-MNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSM-GLRSFSLIFFIALLG 83 (304)
Q Consensus 6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~-~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~ 83 (304)
...|+.+++.++++=|...+.....++++ .+.......=+..+.++.++...+.+..+. .+. -.+.+-.....-++.
T Consensus 112 ~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~-~~~g~f~G~~~~~~~~i~~ 190 (244)
T PF04142_consen 112 PLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAI-SESGFFHGYSWWVWIVIFL 190 (244)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhccccccc-ccCCchhhcchHHHHHHHH
Confidence 45788999999999999999998888764 344444444444455554444333322111 100 011121222223333
Q ss_pred HHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHH
Q 022016 84 VTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTI 141 (304)
Q Consensus 84 ~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~ 141 (304)
...+-.+.-.-++|.+.-.=..-....-+.+.++++.+++.+++.. ..+|..
T Consensus 191 ~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~------f~lg~~ 242 (244)
T PF04142_consen 191 QAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLS------FLLGAA 242 (244)
T ss_pred HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchH------Hhhhee
Confidence 3566667777889998887788888888999999999999999986 666543
No 90
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=92.17 E-value=0.17 Score=40.00 Aligned_cols=108 Identities=8% Similarity=0.024 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccccCcchHHHHHHHHhhccchhe
Q 022016 183 CLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGSGVSF 262 (304)
Q Consensus 183 ~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 262 (304)
.++++.++.+-++...++.++.++..+|...+.+.+..|.+.+..+..+.++. +.+...+..|+... .|+ ....-.
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~-lG~~~V 78 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGL-LGVFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHH-HHHHHH
Confidence 56788999999999999999988875699999999999999998888766643 22211222333322 333 334445
Q ss_pred eeeeeeecccCceeee-eccchHHHHHHHHHHH
Q 022016 263 CVQAWCISKRGPLFSA-MFNPLCTVIVTILAAL 294 (304)
Q Consensus 263 ~l~~~~~~~~~a~~~s-~~~~l~pv~a~l~~~~ 294 (304)
.+..+..+++|++... ....-+-+.++++|.+
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~f 111 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHF 111 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 6677888999987754 4455677778888875
No 91
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=91.41 E-value=7.4 Score=35.40 Aligned_cols=277 Identities=12% Similarity=0.072 Sum_probs=148.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhh--ccc--cCCCCCHHHHHHHHHHH
Q 022016 5 RDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSS--RKY--KSSSMGLRSFSLIFFIA 80 (304)
Q Consensus 5 ~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~--~~~--~~~~~~~~~~~~~~~~g 80 (304)
+-..|++...+++++-|..++-.|...+ .+- |-...-..+-+-+..|+..-.- +.. .....+...+....+.|
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkvk~--WsW-Es~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKVKG--WSW-ESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhcCC--ccH-HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 3567899999999999999999998642 332 2222223333333444432211 100 01233456677778888
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhhc-chhHHHHHHHHHHHhccc---ccccccccchhhhHHHHHHHhHhhhhhccCC
Q 022016 81 LLGVTINQNTYFEGLYLASSSMASAMG-NLIPAITFVMASIVGLEK---IDLGSVRSVAKILGTIFCVGGAISMALLRGP 156 (304)
Q Consensus 81 ~~~~~~~~~~~~~al~~~~~~~a~~i~-~~~Pi~~~lla~l~~~er---~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~ 156 (304)
++- +++...|=.++||++.+...-+. .++-.+-.++--++.++- ++. .-+...++|++++++|++++...+..
T Consensus 81 ~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~--~~g~~vL~Gv~v~LiGIai~g~AG~~ 157 (344)
T PF06379_consen 81 VLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLAT--PSGQIVLLGVAVCLIGIAICGKAGSM 157 (344)
T ss_pred HHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccC--CCchhhhhHHHHHHHHHHHHhHHHHh
Confidence 886 99999999999999988665444 455566666655443321 111 11334889999999999999743211
Q ss_pred ccccccCCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHh---HHHHhhc----CCCchhHH----HHHHHHHHHHH
Q 022016 157 KLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLIL---QVPVSAS----YPDHLSLS----AWMCFLATLQS 225 (304)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~---~k~~~~~----~~~~~~~~----~~~~~~~~l~~ 225 (304)
+ +++.. ++..+.+..+|.+.++++++.-|..+.- .|...+. ..+|.... ...+.-|.+.-
T Consensus 158 --K------e~~~~-~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN 228 (344)
T PF06379_consen 158 --K------EKELG-EEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITN 228 (344)
T ss_pred --h------hhhhc-cchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHH
Confidence 1 11111 1123445669999999997765555443 3332111 11222211 12223344444
Q ss_pred HHHHHhcC---CCcc---cccc-cC--cchHHHHHHHHhhccchheeeeeeeecccCce----eeeeccchHHHHHHHHH
Q 022016 226 ATFAIFTE---PDPE---AWNL-HS--SLEIFCCFFSGAIGSGVSFCVQAWCISKRGPL----FSAMFNPLCTVIVTILA 292 (304)
Q Consensus 226 ~~~~~~~~---~~~~---~~~~-~~--~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~a~----~~s~~~~l~pv~a~l~~ 292 (304)
....++.. .+.+ ++.. .+ .......+..|. -=..++.+|.++-.++++. --...+.+..+++-+.+
T Consensus 229 ~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~-lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwG 307 (344)
T PF06379_consen 229 LIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGV-LWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWG 307 (344)
T ss_pred HHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHH
Confidence 44443321 1221 1111 11 122333333333 2345666777777777754 23455666666777766
Q ss_pred HHHhCC
Q 022016 293 ALLLHE 298 (304)
Q Consensus 293 ~~~~~e 298 (304)
.+. +|
T Consensus 308 l~l-kE 312 (344)
T PF06379_consen 308 LIL-KE 312 (344)
T ss_pred HHH-HH
Confidence 443 44
No 92
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=91.41 E-value=0.087 Score=38.58 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=27.9
Q ss_pred ccchheeeeeeeecccCceeeee-ccchHHHHHHHHHHHHhCCccccCC
Q 022016 257 GSGVSFCVQAWCISKRGPLFSAM-FNPLCTVIVTILAALLLHEEIYTGR 304 (304)
Q Consensus 257 ~~~~~~~l~~~~~~~~~a~~~s~-~~~l~pv~a~l~~~~~~~e~~~~~~ 304 (304)
+.++++.++.+++|+++.+.+=+ ..-+..+...+.+.+++||++|..+
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~ 86 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK 86 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 55778899999999999999844 4568999999999999999998753
No 93
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=91.09 E-value=6.4 Score=35.21 Aligned_cols=138 Identities=21% Similarity=0.173 Sum_probs=96.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHHhhhccccC----------CCCCHH
Q 022016 6 DYKPAMAMLALQFSYAVVALSTRAALLQG----MNPRVFVVYRQAIATLFMAPMAYLSSRKYKS----------SSMGLR 71 (304)
Q Consensus 6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~~----~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~----------~~~~~~ 71 (304)
+..|.+.+..+..+=|.=|.+.+..++++ =+|....+.-.-.-.+.++|..+..++.... +....+
T Consensus 162 ~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~r 241 (349)
T KOG1443|consen 162 NIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILR 241 (349)
T ss_pred eehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHH
Confidence 45688889999999999999999988763 2577777776667777777766655542220 111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhh
Q 022016 72 SFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISM 150 (304)
Q Consensus 72 ~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li 150 (304)
....+...|.+. ++--.+-+.=+..++.-..++..---=+.+.+++..+.+|+++.. .+.|..++..|+..=
T Consensus 242 v~g~i~l~g~la-F~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~l------N~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 242 VIGLISLGGLLA-FLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLL------NWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHH-HHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhh------HHHHHHHHHHHHHHh
Confidence 333344445554 333344455566777777777777777889999999999999998 999999999998877
No 94
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=87.80 E-value=0.89 Score=39.47 Aligned_cols=137 Identities=12% Similarity=-0.006 Sum_probs=94.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCH-HHHHHHHHHHHH
Q 022016 4 LRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGL-RSFSLIFFIALL 82 (304)
Q Consensus 4 ~~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~ 82 (304)
.++.+|-+++++++.+++.+.+.-.+..++ .|..++..+--+.++++-.+= .+.++++. ..++| .+...++. ..+
T Consensus 162 snp~~GD~lvi~GATlYaVSNv~EEflvkn-~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~-~tl~w~~~i~~yl~-f~L 237 (336)
T KOG2766|consen 162 SNPVKGDFLVIAGATLYAVSNVSEEFLVKN-ADRVELMGFLGLFGAIISAIQ-FIFERHHV-STLHWDSAIFLYLR-FAL 237 (336)
T ss_pred CCCccCcEEEEecceeeeeccccHHHHHhc-CcHHHHHHHHHHHHHHHHHHH-Hhhhccce-eeEeehHHHHHHHH-HHH
Confidence 467888999999999999999999999876 999999998888888877664 34455444 43444 22233333 444
Q ss_pred HHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 83 GVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 83 ~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
.+++.+.+.=.=++..+++...+=.-+.-.|..++ ..++-+++|. -.++-.....|.++-..
T Consensus 238 ~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wL------Y~laF~~i~~GliiYs~ 299 (336)
T KOG2766|consen 238 TMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWL------YFLAFATIATGLIIYST 299 (336)
T ss_pred HHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhh------hHHHHHHHHHhhEEeec
Confidence 44554444444555555555444445666666665 4556669988 88888888889888764
No 95
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=87.35 E-value=0.35 Score=36.49 Aligned_cols=47 Identities=6% Similarity=0.051 Sum_probs=37.7
Q ss_pred ccchheeeeeeeecccCceee-eeccchHHHHHHHHHHHHhCCccccC
Q 022016 257 GSGVSFCVQAWCISKRGPLFS-AMFNPLCTVIVTILAALLLHEEIYTG 303 (304)
Q Consensus 257 ~~~~~~~l~~~~~~~~~a~~~-s~~~~l~pv~a~l~~~~~~~e~~~~~ 303 (304)
+.++++.+...++|++|.+.+ +...-+.-+.+.+.+++++||++|+.
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~ 91 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK 91 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 446778888889999988876 55555777888999999999999864
No 96
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=86.01 E-value=4.4 Score=34.57 Aligned_cols=125 Identities=12% Similarity=0.083 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHhhhccccC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022016 21 AVVALSTRAALL-QGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKS---SSMGLRSFSLIFFIALLGVTINQNTYFEGLY 96 (304)
Q Consensus 21 ~~~~~~~k~~~~-~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~ 96 (304)
+..-..+|...+ +...-.+.+++..+.+..++..+....+.+... ..++.-.+.+.++.|+.. +.-..|.-+.++
T Consensus 168 aafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s-vgiSy~saWcvr 246 (309)
T COG5070 168 AAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS-VGISYCSAWCVR 246 (309)
T ss_pred HHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH-hhhhhccceeEe
Confidence 333344444432 236678889999999999988877766654320 122334445666677776 555667778899
Q ss_pred ccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 97 LASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 97 ~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
-++.+.-+++..+.-.-..+-+.++++|+.++. ++.+++++++..++-..
T Consensus 247 VtSSTtySMvGALNKlp~alaGlvffdap~nf~------si~sillGflsg~iYav 296 (309)
T COG5070 247 VTSSTTYSMVGALNKLPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYAV 296 (309)
T ss_pred ehhhhHHHHHHHhhhChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHHH
Confidence 999999999998888888888999999999999 99999999998888774
No 97
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.75 E-value=3.6 Score=32.89 Aligned_cols=113 Identities=11% Similarity=0.052 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCcccccccCcchHHHHHHHHhhccc
Q 022016 180 LLGCLFLFASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTEPDPEAWNLHSSLEIFCCFFSGAIGSG 259 (304)
Q Consensus 180 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 259 (304)
....+.+++++++-.....++.|+.+...+|.....+.+..|.+.+..+..+.++ ..++....+..|+... .|+++..
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~-~~~~a~~~~~pwW~~~-GG~lGa~ 81 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQG-HPGLAAVASAPWWAWI-GGLLGAI 81 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcC-CCchhhccCCchHHHH-ccchhhh
Confidence 4667888999999999999999998887679999999999999999888886433 2223222222333322 2232221
Q ss_pred hheeeeeeeecccCcee-eeeccchHHHHHHHHHHHH
Q 022016 260 VSFCVQAWCISKRGPLF-SAMFNPLCTVIVTILAALL 295 (304)
Q Consensus 260 ~~~~l~~~~~~~~~a~~-~s~~~~l~pv~a~l~~~~~ 295 (304)
. ...-....++++++. ......-+-+.++++|.+=
T Consensus 82 ~-vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG 117 (150)
T COG3238 82 F-VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFG 117 (150)
T ss_pred h-hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1 222345666666544 4555566677777777653
No 98
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=84.27 E-value=0.85 Score=39.37 Aligned_cols=79 Identities=19% Similarity=0.095 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhh
Q 022016 70 LRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAIS 149 (304)
Q Consensus 70 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~l 149 (304)
+|....-...|+.- +.++.+++.|.+..+.+++-.+..+.-+...+-+.+++|||-+.+|. +..+.|+++.++|+.+
T Consensus 206 ~K~t~~nii~G~~W-a~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm--~~v~iGiilivvgai~ 282 (288)
T COG4975 206 NKYTWLNIIPGLIW-AIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM--VYVIIGIILIVVGAIL 282 (288)
T ss_pred HHHHHHHHhhHHHH-HhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh--hhhhhhHHHHHHHhhh
Confidence 45555566788886 89999999999999999988888888899999999999999998811 1124556666666665
Q ss_pred hh
Q 022016 150 MA 151 (304)
Q Consensus 150 i~ 151 (304)
+.
T Consensus 283 lg 284 (288)
T COG4975 283 LG 284 (288)
T ss_pred hh
Confidence 54
No 99
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=83.25 E-value=9.6 Score=33.59 Aligned_cols=140 Identities=14% Similarity=0.154 Sum_probs=94.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHhhhcc----ccCCCCCHHHHHHHHHHH
Q 022016 6 DYKPAMAMLALQFSYAVVALSTRAALL-QGMNPRVFVVYRQAIATLFMAPMAYLSSRK----YKSSSMGLRSFSLIFFIA 80 (304)
Q Consensus 6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~-~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~g 80 (304)
+..|++..-.|-+.=+.-.-+....++ ++-+..+++++.+.++.++++........- ..+.+-+.+.....++.+
T Consensus 188 ~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s 267 (367)
T KOG1582|consen 188 NLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFS 267 (367)
T ss_pred ceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHH
Confidence 344555554444444444444444443 336778899999999998877765553321 111222455566666666
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 81 LLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 81 ~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
..+ .++......=++.-++..+..+...---.+++++++++-.+++.. ...+.++.+.|..+-..
T Consensus 268 ~~g-ylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~q------y~~~gllv~lgI~Ln~y 332 (367)
T KOG1582|consen 268 LAG-YLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQ------YVWSGLLVVLGIYLNMY 332 (367)
T ss_pred HHh-HhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHH------HhhhhHHHHHHHHhhcc
Confidence 665 455555555555567777777777777899999999999999998 88899999999998874
No 100
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=82.39 E-value=0.56 Score=35.49 Aligned_cols=47 Identities=11% Similarity=0.048 Sum_probs=35.5
Q ss_pred ccchheeeeeeeecccCceeeeec-cchHHHHHHHHHHHHhCCccccC
Q 022016 257 GSGVSFCVQAWCISKRGPLFSAMF-NPLCTVIVTILAALLLHEEIYTG 303 (304)
Q Consensus 257 ~~~~~~~l~~~~~~~~~a~~~s~~-~~l~pv~a~l~~~~~~~e~~~~~ 303 (304)
+.++++.++..++|+++.+.+=.+ .-+.-+...+.++++|||++|+.
T Consensus 39 ~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~ 86 (110)
T PRK09541 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP 86 (110)
T ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 445667777788888887776444 44677788999999999999864
No 101
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=80.91 E-value=0.64 Score=35.73 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=41.0
Q ss_pred HhhccchheeeeeeeecccCceeeeec-cchHHHHHHHHHHHHhCCccccC
Q 022016 254 GAIGSGVSFCVQAWCISKRGPLFSAMF-NPLCTVIVTILAALLLHEEIYTG 303 (304)
Q Consensus 254 g~~~~~~~~~l~~~~~~~~~a~~~s~~-~~l~pv~a~l~~~~~~~e~~~~~ 303 (304)
.+...++++.++.+++|+++.+.+=.+ .-+.-+.+.+++++++||++|+.
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~ 86 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM 86 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 344557788999999999999887555 46888899999999999999864
No 102
>PRK11431 multidrug efflux system protein; Provisional
Probab=77.92 E-value=1.1 Score=33.58 Aligned_cols=47 Identities=21% Similarity=0.223 Sum_probs=36.3
Q ss_pred ccchheeeeeeeecccCceee-eeccchHHHHHHHHHHHHhCCccccC
Q 022016 257 GSGVSFCVQAWCISKRGPLFS-AMFNPLCTVIVTILAALLLHEEIYTG 303 (304)
Q Consensus 257 ~~~~~~~l~~~~~~~~~a~~~-s~~~~l~pv~a~l~~~~~~~e~~~~~ 303 (304)
+.++++.+...++|++|.+.+ +...-+.-+.+.+.++++++|++|+.
T Consensus 38 ~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~ 85 (105)
T PRK11431 38 AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA 85 (105)
T ss_pred HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 446677778888888887775 44555777888999999999999864
No 103
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=76.84 E-value=26 Score=26.15 Aligned_cols=118 Identities=21% Similarity=0.139 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022016 11 MAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYLSSRKYKSSSMGLRSFSLIFFIALLGVTINQNT 90 (304)
Q Consensus 11 ~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 90 (304)
..++..+.+||...++.|.... |.+...=.. | ......++-+.. .+++ .+...=.++ -.+..+
T Consensus 6 ~~lvaVgllWG~Tnplirrgs~-g~~~v~~~~-~--------k~~~~lqe~~tl--~l~w----~Y~iPFllN-qcgSal 68 (125)
T KOG4831|consen 6 DKLVAVGLLWGATNPLIRRGSL-GWDKVKSSS-R--------KIMIALQEMKTL--FLNW----EYLIPFLLN-QCGSAL 68 (125)
T ss_pred HHHHHHHHHHccccHHHHHHHh-hHhhccCch-H--------HHHHHHHHHHHH--HHhH----HHHHHHHHH-HhhHHH
Confidence 4567789999999999998753 222111000 0 000001111111 0011 122223333 456778
Q ss_pred HHHHhhccccchhhhhcch-hHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016 91 YFEGLYLASSSMASAMGNL-IPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMA 151 (304)
Q Consensus 91 ~~~al~~~~~~~a~~i~~~-~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~ 151 (304)
||.-+.+++.+.+..+-+. .-.|+.+.+..+..|-...+ .+.|..+.+.|..+++
T Consensus 69 y~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~------a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 69 YYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGL------ALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccce------eehhhhHHhhhhhhee
Confidence 9999999999999988864 55688888887766666777 8899999988887654
No 104
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=71.14 E-value=0.61 Score=34.88 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=33.2
Q ss_pred cchheeeeeeeecccCceee-eeccchHHHHHHHHHHHHhCCccccC
Q 022016 258 SGVSFCVQAWCISKRGPLFS-AMFNPLCTVIVTILAALLLHEEIYTG 303 (304)
Q Consensus 258 ~~~~~~l~~~~~~~~~a~~~-s~~~~l~pv~a~l~~~~~~~e~~~~~ 303 (304)
..++|.+..+++|++|.+.+ +...-..-+...+.++++|+|++|..
T Consensus 40 ~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~ 86 (106)
T COG2076 40 YGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI 86 (106)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH
Confidence 34566677777777776664 55556667778889999999998853
No 105
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=68.63 E-value=46 Score=29.63 Aligned_cols=143 Identities=16% Similarity=0.172 Sum_probs=90.4
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHh--hhcccc----CCCCCHHHHHH
Q 022016 3 SLRDYKPAMAMLALQFSYAVVALSTRAALL-QGMNPRVFVVYRQAIATLFMAPMAYL--SSRKYK----SSSMGLRSFSL 75 (304)
Q Consensus 3 ~~~~~~g~~~~l~~~~~~~~~~~~~k~~~~-~~~~p~~~~~~R~~~a~~~l~~~~~~--~~~~~~----~~~~~~~~~~~ 75 (304)
+++...|.++.+.+.++-+.-.++=++.+. .+++|.+.+.|.-..+..++..+... ...... .++-...++..
T Consensus 171 ~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~ 250 (372)
T KOG3912|consen 171 YSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGD 250 (372)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHH
Confidence 345667889999999999999998766544 45999999999988885544332221 111110 01111223221
Q ss_pred ---------HHHHHHHHHHHHHHHHH-HH---hhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHH
Q 022016 76 ---------IFFIALLGVTINQNTYF-EG---LYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIF 142 (304)
Q Consensus 76 ---------~~~~g~~~~~~~~~~~~-~a---l~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l 142 (304)
.+.....+......+++ .| -++.++++=.++...-..++=+++..+..|+++.. |+.|-++
T Consensus 251 ~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ll------qilGFli 324 (372)
T KOG3912|consen 251 AFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLL------QILGFLI 324 (372)
T ss_pred HHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH------HHHHHHH
Confidence 12222333222222222 22 23456677777777766666678888899999998 9999999
Q ss_pred HHHhHhhhh
Q 022016 143 CVGGAISMA 151 (304)
Q Consensus 143 ~~~G~~li~ 151 (304)
-..|.++-.
T Consensus 325 Li~Gi~lY~ 333 (372)
T KOG3912|consen 325 LIMGIILYN 333 (372)
T ss_pred HHHHHHHHH
Confidence 999998765
No 106
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=67.64 E-value=40 Score=25.14 Aligned_cols=32 Identities=6% Similarity=0.032 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhh
Q 022016 113 ITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISM 150 (304)
Q Consensus 113 ~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li 150 (304)
.-..++.+.+||+++|. ...|-++.+.++..+
T Consensus 75 vF~~Fsv~~l~E~l~~n------~l~af~~i~~av~fi 106 (108)
T PF04342_consen 75 VFAPFSVFYLGEPLKWN------YLWAFLCILGAVYFI 106 (108)
T ss_pred eeHHHHHHHhCCCccHH------HHHHHHHHHHhhhee
Confidence 33467788999999998 888887776666544
No 107
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=67.22 E-value=90 Score=27.81 Aligned_cols=138 Identities=12% Similarity=0.138 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHH-hh------hcccc--CCCCCHHHHHHH
Q 022016 7 YKPAMAMLALQFSYAVVALSTRAALL-QGMNPRVFVVYRQAIATLFMAPMAY-LS------SRKYK--SSSMGLRSFSLI 76 (304)
Q Consensus 7 ~~g~~~~l~~~~~~~~~~~~~k~~~~-~~~~p~~~~~~R~~~a~~~l~~~~~-~~------~~~~~--~~~~~~~~~~~~ 76 (304)
..|+..+.++.+.=+.+.+......+ +|=++-+..++-......+++.... +. .+.+. .|....+ .+..
T Consensus 163 ~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~-vP~~ 241 (330)
T KOG1583|consen 163 LIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFK-VPSM 241 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCcc-ccHH
Confidence 45677777777777777777776654 3578999999999998887765431 00 01110 0111111 2222
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc----ccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 77 FFIALLGVTINQNTYFEGLYLA----SSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 77 ~~~g~~~~~~~~~~~~~al~~~----~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
+..=+.. ++.+.....++... ++-+.+++..+=-.+..+++.+.++.+++++ .|+|..+.+.|.++...
T Consensus 242 ~~yLl~n-~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~------h~lGa~lVF~Gt~~fa~ 314 (330)
T KOG1583|consen 242 WVYLLFN-VLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPW------HWLGAALVFFGTLLFAN 314 (330)
T ss_pred HHHHHHH-HHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHH------HHHHHHHHHHHHHHHHH
Confidence 2222232 44455555555444 3445667777777889999999999999999 99999999999999874
No 108
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=66.99 E-value=6.6 Score=29.28 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 109 LIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 109 ~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
..-+...+..+.+-++|+++. .++|..+++.|+.++.+
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~------D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRW------DWIGAAICLVGVAIILF 103 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChH------HHHhHHHHHHhHHheEe
Confidence 555667777888899999999 99999999999999985
No 109
>PRK02237 hypothetical protein; Provisional
Probab=66.74 E-value=8.5 Score=28.78 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 109 LIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 109 ~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
..-+...+..|.+.++|++++ .++|..++++|+.++.+
T Consensus 68 vyI~~Sl~W~w~vdg~~Pd~~------D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 68 VYVAGSLLWLWVVDGVRPDRW------DWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHHHHHHHHHHhcCcCCChh------HHHhHHHHHHhHHHhee
Confidence 445556677888899999999 99999999999998864
No 110
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=60.76 E-value=94 Score=25.56 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=15.4
Q ss_pred hhhhhcchhHH-HHHHHHHHHhccccc
Q 022016 102 MASAMGNLIPA-ITFVMASIVGLEKID 127 (304)
Q Consensus 102 ~a~~i~~~~Pi-~~~lla~l~~~er~~ 127 (304)
+.....+..|+ ...++...+.++|..
T Consensus 59 ~~~~~~~~~P~a~~~~l~~~l~~~~~a 85 (194)
T PF07698_consen 59 DISYFPYLIPVAAAAMLLTILIDPRLA 85 (194)
T ss_pred cchhhhhhhHHHHHHHHHHHHhcchHH
Confidence 55556667775 444555556666664
No 111
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.44 E-value=20 Score=31.70 Aligned_cols=140 Identities=16% Similarity=0.135 Sum_probs=90.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhhhcccc---CCCC-CHHHHHHHHHHH
Q 022016 6 DYKPAMAMLALQFSYAVVALSTRAALLQ-GMNPRVFVVYRQAIATLFMAPMAYLSSRKYK---SSSM-GLRSFSLIFFIA 80 (304)
Q Consensus 6 ~~~g~~~~l~~~~~~~~~~~~~k~~~~~-~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~---~~~~-~~~~~~~~~~~g 80 (304)
...|+++...+.+.-+.+.+-.|..+.. +-.-..+.++..+.+.++++|...+.+.-+. .+++ ..+-|....+.|
T Consensus 183 s~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsg 262 (347)
T KOG1442|consen 183 SWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSG 262 (347)
T ss_pred chhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHH
Confidence 3578999999999999999999976543 1235678888999999999998876543221 0233 233344444556
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 81 LLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 81 ~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
++|+..++.. ..=++.++|-+=-+=...-...=.+++...++|..+.. .|.+-++.+.|...-..
T Consensus 263 lfgF~mgyvT-g~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~l------wwtsn~~vLvgs~~YT~ 327 (347)
T KOG1442|consen 263 LFGFAMGYVT-GWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGL------WWTSNIVVLVGSLAYTL 327 (347)
T ss_pred HHHHHhhhee-eEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhh------eeeeeEEEEehhHHHHH
Confidence 6664433322 22334444432222222233455678888999999988 88888888888887764
No 112
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=55.60 E-value=86 Score=25.42 Aligned_cols=86 Identities=23% Similarity=0.319 Sum_probs=52.3
Q ss_pred HHHHHhcccccccccccchhhhHHHH-------HHHhHhhhhhccCCccccccCCccccccccCCCCCchHHHHHHHHHH
Q 022016 117 MASIVGLEKIDLGSVRSVAKILGTIF-------CVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFAS 189 (304)
Q Consensus 117 la~l~~~er~~~~~~~~~~~~~g~~l-------~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a 189 (304)
....+.|..++.+ +.+|+.+ ++.|+.++...+ +.+..--...++.+
T Consensus 88 ~Em~v~KtsP~LY------r~LGIfLPLITTNCaVLgvaLln~~~---------------------~~~f~qsv~~gf~a 140 (193)
T COG4657 88 TEMVVRKTSPTLY------RLLGIFLPLITTNCAVLGVALLNINE---------------------GHNFLQSVVYGFGA 140 (193)
T ss_pred HHHHHHccCHHHH------HHHHHhhhhHhhchHHHHHHHHHhhh---------------------hhhHHHHHHHHhhh
Confidence 3334455555555 7777664 667888877422 23344556777888
Q ss_pred HHHHHHHHHhHHHHhhc-----CCCchhHHHHHHHHHHHHHHHHH
Q 022016 190 ACCWSLWLILQVPVSAS-----YPDHLSLSAWMCFLATLQSATFA 229 (304)
Q Consensus 190 ~~~~a~~~~~~k~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~ 229 (304)
+++|++..++-.-..++ .|.|..-..+.+..++++...+.
T Consensus 141 ~lGfslvmvlfA~iRER~~~advP~~frG~~ialitagLmSlaFm 185 (193)
T COG4657 141 ALGFSLVMVLFAAIRERLALADVPAPFRGAAIALITAGLMSLAFM 185 (193)
T ss_pred HhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHc
Confidence 88888888876544433 45566556666666666554443
No 113
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=54.55 E-value=80 Score=25.05 Aligned_cols=32 Identities=13% Similarity=0.238 Sum_probs=26.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhHHHHhhcC
Q 022016 176 GENWLLGCLFLFASACCWSLWLILQVPVSASY 207 (304)
Q Consensus 176 ~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~ 207 (304)
+++.....+..+++++.|.-|...+||+...+
T Consensus 116 d~~~i~~l~~~li~a~IwipYf~~S~RVK~TF 147 (149)
T PF10754_consen 116 DAEAIRELLRSLIAAAIWIPYFLRSKRVKNTF 147 (149)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhc
Confidence 34556788899999999999999999987654
No 114
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=48.18 E-value=6 Score=34.88 Aligned_cols=32 Identities=0% Similarity=0.063 Sum_probs=0.0
Q ss_pred hhccccchhhhhcchhHHHHHHH-HHHHhcccc
Q 022016 95 LYLASSSMASAMGNLIPAITFVM-ASIVGLEKI 126 (304)
Q Consensus 95 l~~~~~~~a~~i~~~~Pi~~~ll-a~l~~~er~ 126 (304)
++-.+-+-.+++.+..-++++++ -..++|+|+
T Consensus 44 msd~t~~a~~vl~sfAvvliiIIiIImlF~RrL 76 (381)
T PF05297_consen 44 MSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRL 76 (381)
T ss_dssp ---------------------------------
T ss_pred HhccccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444455555444433333 333466665
No 115
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=43.46 E-value=20 Score=26.65 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 109 LIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 109 ~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
..-....+..+.+-+.|++++ .+.|..+++.|+.++.+
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr~------D~~Ga~icl~G~~vil~ 104 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDRY------DWIGAAICLAGVAVILF 104 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcHH------HhhhHHHHHhceeeeEe
Confidence 344556666777889999999 99999999999988875
No 116
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=39.17 E-value=90 Score=20.93 Aligned_cols=39 Identities=8% Similarity=0.020 Sum_probs=29.6
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHH
Q 022016 3 SLRDYKPAMAMLALQFSYAVVALSTRAALLQG--MNPRVFV 41 (304)
Q Consensus 3 ~~~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~--~~p~~~~ 41 (304)
|++...+.+.++++.+++-.......+.-++| .+|+...
T Consensus 1 m~~~~l~~~~~llg~~~l~i~~~~~syVd~~G~L~EpFfLi 41 (63)
T PF13127_consen 1 MKKYILSLILLLLGVVCLFIFNIIGSYVDEDGVLHEPFFLI 41 (63)
T ss_pred CcchHHHHHHHHHHHHHHHHHhcccceECCCCeEecccHHH
Confidence 45567788888899999998888888877777 5675434
No 117
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=37.75 E-value=1.1e+02 Score=26.85 Aligned_cols=55 Identities=7% Similarity=-0.008 Sum_probs=37.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CChHHHHHHHHH----HHHHHHHHHHHh
Q 022016 4 LRDYKPAMAMLALQFSYAVVALSTRAALLQG-------MNPRVFVVYRQA----IATLFMAPMAYL 58 (304)
Q Consensus 4 ~~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~-------~~p~~~~~~R~~----~a~~~l~~~~~~ 58 (304)
+|+..|..+++++.+++|.+.+-.++..+++ -+++..++-.+. .+.+.+...+.+
T Consensus 179 ~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~ 244 (254)
T PF07857_consen 179 KKRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCII 244 (254)
T ss_pred cchhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHh
Confidence 3577899999999999999999999998773 244444444433 334444444444
No 118
>KOG4320 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.64 E-value=2.7e+02 Score=24.17 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=28.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHh-HHHHhhcCCCchhHHHHHHHHHHHH
Q 022016 177 ENWLLGCLFLFASACCWSLWLIL-QVPVSASYPDHLSLSAWMCFLATLQ 224 (304)
Q Consensus 177 ~~~~~G~~~~l~a~~~~a~~~~~-~k~~~~~~~~~~~~~~~~~~~~~l~ 224 (304)
.-...|..+++.++..|.....+ +++..++. +...+..+++.++.+.
T Consensus 117 ~VH~~ga~laF~~g~LY~~~Qa~LSy~~~p~~-~~~~v~~iR~~lavi~ 164 (253)
T KOG4320|consen 117 IVHDIGAVLAFGAGLLYMWFQAILSYQRDPNI-PTLIVFYIRLVLAVIC 164 (253)
T ss_pred hhhhhhhhHHhcchHHHHHHHHHHHhccCCCc-ccchhhHHHHHHHHHH
Confidence 34668888888888777765443 34433444 3566666666665554
No 119
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=37.63 E-value=63 Score=19.44 Aligned_cols=35 Identities=11% Similarity=0.119 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 022016 66 SSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASS 100 (304)
Q Consensus 66 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~ 100 (304)
|..+||++..++..|.........++=+.-..+|+
T Consensus 4 Pdm~RR~lmN~ll~Gava~~a~~~lyP~~~ffvPP 38 (39)
T PF08802_consen 4 PDMSRRQLMNLLLGGAVAVPAGGMLYPYVKFFVPP 38 (39)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred CChhHHHHHHHHHHhhHHHHHHHHhhhheeEecCC
Confidence 45678999998888888866666665555444443
No 120
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=36.39 E-value=48 Score=26.28 Aligned_cols=48 Identities=8% Similarity=0.097 Sum_probs=30.0
Q ss_pred hhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhh
Q 022016 95 LYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAIS 149 (304)
Q Consensus 95 l~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~l 149 (304)
+..-+.-.++.+.++.|+++.+++.++ -+++... +.+.++.+++|..+
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~L-a~~L~~~------e~~~~~~~~lg~~l 116 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAIL-AQYLFFS------ELIVIFGAFLGLAL 116 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh------hHHHHHHHHHHHHH
Confidence 333455567889999999998888866 3344443 55555555444443
No 121
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=35.56 E-value=3.6e+02 Score=24.83 Aligned_cols=136 Identities=10% Similarity=-0.021 Sum_probs=83.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH-HHHHHHHHHHhhhccccC------CCCCHHHHHHH
Q 022016 4 LRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAI-ATLFMAPMAYLSSRKYKS------SSMGLRSFSLI 76 (304)
Q Consensus 4 ~~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~-a~~~l~~~~~~~~~~~~~------~~~~~~~~~~~ 76 (304)
.+...|..+++.++..=|+..+.....++++=.+..+-=.|.-. +.++.+.-.+.. ..... ...++..|...
T Consensus 179 ~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~-d~~~i~~~gff~G~s~~vw~vV 257 (345)
T KOG2234|consen 179 QNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQ-DGEAINEYGFFYGYSSIVWLVV 257 (345)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCccccccHHHHHHH
Confidence 35678899999999999999998887775433333333333333 333333333222 21110 11123333222
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016 77 FFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMA 151 (304)
Q Consensus 77 ~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~ 151 (304)
+..+.+-.+.-.=++|.+--.=..-.+..-+++.+.++.+++-+++.. -.+|+.+.+..+.+-.
T Consensus 258 -----l~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~------F~lG~~lVi~Si~lY~ 321 (345)
T KOG2234|consen 258 -----LLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLY------FLLGALLVILSIFLYS 321 (345)
T ss_pred -----HHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHH------HHHHHHHHHHHHHHhh
Confidence 222444445555566766555555666778899999999999999997 8888888877777666
No 122
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=33.59 E-value=2.8e+02 Score=23.13 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=31.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHh
Q 022016 4 LRDYKPAMAMLALQFSYAVVALSTRAALLQGMNPRVFVVYRQAIATLFMAPMAYL 58 (304)
Q Consensus 4 ~~~~~g~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~R~~~a~~~l~~~~~~ 58 (304)
+|.....++++.+.+.-+..+.....-. +...++..|--.++.++++.+...
T Consensus 26 ~n~v~s~l~Li~~f~~vA~l~~ll~a~F---la~~qIiVYvGAI~VLflFvIMll 77 (198)
T PRK06638 26 RNPVHSALFLILTFLSIAGLYFLLGAEF---LGVVQIIVYVGAVMVLFLFVVMML 77 (198)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhchHH---HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444455555555555554444443322 667778888777777777776655
No 123
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.13 E-value=1.2e+02 Score=27.49 Aligned_cols=81 Identities=12% Similarity=0.139 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcc-hhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHh
Q 022016 70 LRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGN-LIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAI 148 (304)
Q Consensus 70 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~ 148 (304)
+..|...+...... .......+.|++.-+.+..+.+.+ +...++++-+.+++||=-+..-.+=.....|....+.|++
T Consensus 224 ~~ty~~~l~~~~~~-~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~f 302 (335)
T KOG2922|consen 224 PLTWIFLLVVATCV-STQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIF 302 (335)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheee
Confidence 33444444444443 666677889999999999998887 6667888888888998665544444456677777788887
Q ss_pred hhh
Q 022016 149 SMA 151 (304)
Q Consensus 149 li~ 151 (304)
++-
T Consensus 303 lL~ 305 (335)
T KOG2922|consen 303 LLH 305 (335)
T ss_pred Eee
Confidence 775
No 124
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=30.11 E-value=1.3e+02 Score=22.83 Aligned_cols=40 Identities=15% Similarity=0.050 Sum_probs=32.9
Q ss_pred eeeeeeeecccCceeeeecc-chHHHHHHHHHHHHhCCccc
Q 022016 262 FCVQAWCISKRGPLFSAMFN-PLCTVIVTILAALLLHEEIY 301 (304)
Q Consensus 262 ~~l~~~~~~~~~a~~~s~~~-~l~pv~a~l~~~~~~~e~~~ 301 (304)
-..|++.+++.+.+.+.++. .+.-+++.+.++++.+|..+
T Consensus 55 Sv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~ 95 (113)
T PF10639_consen 55 SVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVIS 95 (113)
T ss_pred HHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccc
Confidence 46678889999999999995 88899999999777666554
No 125
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=27.82 E-value=5.7e+02 Score=24.77 Aligned_cols=49 Identities=2% Similarity=-0.115 Sum_probs=29.3
Q ss_pred hhhhcchhHHHHHHHHHHH--hcccccc-cccccchhhhHHHHHHHhHhhhh
Q 022016 103 ASAMGNLIPAITFVMASIV--GLEKIDL-GSVRSVAKILGTIFCVGGAISMA 151 (304)
Q Consensus 103 a~~i~~~~Pi~~~lla~l~--~~er~~~-~~~~~~~~~~g~~l~~~G~~li~ 151 (304)
++-+++..|+++++++-++ +=.|..+ +|-||.....++.+.+.|...++
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~ 361 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCI 361 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 6778899999988777542 1112211 12244556677777777766544
No 126
>PRK11056 hypothetical protein; Provisional
Probab=27.07 E-value=2.9e+02 Score=21.13 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhccccc
Q 022016 69 GLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKID 127 (304)
Q Consensus 69 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~ 127 (304)
+++.+...++.|+.+-+....++. ..+=.+..|+.+.+++..-+.+|--
T Consensus 8 ek~tLlLaliaGl~~ng~fs~Lf~----------s~VpFSiFPlIaLvLavycLyQ~Yl 56 (120)
T PRK11056 8 EKGTLLLALIAGLSINGTFAALFS----------SIVPFSIFPLIALVLAVYCLHQRYL 56 (120)
T ss_pred chhhHHHHHHHHHhhchhhHHHHc----------cccccHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666665333222221 2234578899999999887666553
No 127
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=26.75 E-value=2.2e+02 Score=25.47 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=44.1
Q ss_pred hhhHHHHHHHhHhhhhhccCCccccccCCccccccccCCCCCchHHHHHHHHHHHHHHHHHH-------HhH-HHHhhcC
Q 022016 136 KILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWL-------ILQ-VPVSASY 207 (304)
Q Consensus 136 ~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~-------~~~-k~~~~~~ 207 (304)
.+.|..++..|...... +-+ .........|..+..++.+.|.... +.. |+..++.
T Consensus 6 ~~f~~~mGtg~l~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~el 68 (330)
T PF03595_consen 6 AWFGMVMGTGGLSNLLY-LLP----------------YHFGGLAILSEVLFILALILFLVLLVLYLLRWIRYPKAFKAEL 68 (330)
T ss_dssp GGGHHHHHHHHHHHHHH-TTT----------------TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHH----------------HhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 78889999988888872 111 1234456677777777777766622 222 3333444
Q ss_pred CCchhHHHHHHHHHHHHHHHH
Q 022016 208 PDHLSLSAWMCFLATLQSATF 228 (304)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~~~~ 228 (304)
.||.....+.....+...+..
T Consensus 69 ~~p~~~~f~~t~~m~~~~l~~ 89 (330)
T PF03595_consen 69 RHPVRSSFFPTFPMALMLLAA 89 (330)
T ss_dssp HSTTGGGGGGHHHHHHHHHHH
T ss_pred cCCcccchHHHHHHHHHHHHH
Confidence 467776666655544444433
No 128
>COG2246 Predicted membrane protein [Function unknown]
Probab=26.70 E-value=3.1e+02 Score=21.43 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccchhhhhcchhHHHHHHHHHHHhccccccc
Q 022016 68 MGLRSFSLIFFIALLGVTINQNTYFEGLY--LASSSMASAMGNLIPAITFVMASIVGLEKIDLG 129 (304)
Q Consensus 68 ~~~~~~~~~~~~g~~~~~~~~~~~~~al~--~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~ 129 (304)
...++..++...|..+..++...+..-.+ ..+...+..+.... .++..++.+++.+.+
T Consensus 8 ~~~~~~lrF~~VG~~~t~V~~~~~~ll~~~~~~~~~~A~~~a~~~----~ii~sf~~N~~wTF~ 67 (139)
T COG2246 8 FTLSRLLRFAIVGGLGTLVDFAVLWLLVKALGVPYALANAIAYEA----AIIFSFVLNRRWTFR 67 (139)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHHHhcccchHHHHHHHHHH----HHHHHHHHHceeeEe
Confidence 34677888999999997777666665555 34455554444433 333344445555544
No 129
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=24.20 E-value=1.7e+02 Score=19.33 Aligned_cols=17 Identities=35% Similarity=0.688 Sum_probs=13.8
Q ss_pred hhhHHHHHHHhHhhhhh
Q 022016 136 KILGTIFCVGGAISMAL 152 (304)
Q Consensus 136 ~~~g~~l~~~G~~li~~ 152 (304)
|++|+++.+.|++++..
T Consensus 1 kiigi~Llv~GivLl~~ 17 (59)
T PF11381_consen 1 KIIGIALLVGGIVLLYF 17 (59)
T ss_pred CeeeehHHHHHHHHHHh
Confidence 45788888999988885
No 130
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=23.41 E-value=2.9e+02 Score=19.92 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=17.2
Q ss_pred HhcccccccccccchhhhHHHHHHHhHhhhh
Q 022016 121 VGLEKIDLGSVRSVAKILGTIFCVGGAISMA 151 (304)
Q Consensus 121 ~~~er~~~~~~~~~~~~~g~~l~~~G~~li~ 151 (304)
.-+|++++|..-++.-+-+.+-...|++++-
T Consensus 25 ~s~Epit~RL~iGR~ilGs~~S~~Aga~Li~ 55 (89)
T PF04550_consen 25 ASNEPITLRLFIGRVILGSAVSVVAGAALIQ 55 (89)
T ss_pred ccCCCCchhHHhHHHHHhhHHHHHHHHHHhc
Confidence 3689999984444444333444444555544
No 131
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=23.07 E-value=92 Score=24.95 Aligned_cols=26 Identities=8% Similarity=0.079 Sum_probs=18.0
Q ss_pred ccccchhhhhcchhHHHHHHHHHHHh
Q 022016 97 LASSSMASAMGNLIPAITFVMASIVG 122 (304)
Q Consensus 97 ~~~~~~a~~i~~~~Pi~~~lla~l~~ 122 (304)
.-+.-.++.+.+..|++.++.+..+.
T Consensus 71 e~~llkaa~lvYllPLl~li~ga~l~ 96 (154)
T PRK10862 71 EGSLLRSALLVYMTPLVGLFLGAALF 96 (154)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677888888988877766553
No 132
>PF13347 MFS_2: MFS/sugar transport protein
Probab=22.91 E-value=3.3e+02 Score=25.24 Aligned_cols=62 Identities=8% Similarity=0.075 Sum_probs=37.9
Q ss_pred HHHHHhhccccchhhhhcchhHHHHHHHHHHH----hcccccccccccchhhhHHHHHHHhHhhhh
Q 022016 90 TYFEGLYLASSSMASAMGNLIPAITFVMASIV----GLEKIDLGSVRSVAKILGTIFCVGGAISMA 151 (304)
Q Consensus 90 ~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~----~~er~~~~~~~~~~~~~g~~l~~~G~~li~ 151 (304)
.++....-.+++.++++....+++-++..-++ .|-|-.+.|+|.|.-+.++..++....+..
T Consensus 26 ~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~ 91 (428)
T PF13347_consen 26 YFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFS 91 (428)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhc
Confidence 33444446788888888888888877755554 334444455666666555555554444443
No 133
>PF11361 DUF3159: Protein of unknown function (DUF3159); InterPro: IPR016566 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=22.82 E-value=2.7e+02 Score=23.19 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=40.9
Q ss_pred hhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhhccCCccccccCCccccccccCCCCCchHH
Q 022016 102 MASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALLRGPKLLNTEFLPEKSFLFRSSGGENWLL 181 (304)
Q Consensus 102 ~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (304)
..+++....--.....-.+..||+++. .+.|.+...++..+... . ++..+.+..
T Consensus 28 ~~aliaA~~~a~~~~v~RL~r~~~~~~-------a~~gl~gV~i~a~~A~~-t------------------G~A~~~Fl~ 81 (187)
T PF11361_consen 28 TPALIAALAVAVVIVVWRLVRRESVQP-------ALSGLFGVAISAAIAWR-T------------------GSAKDFFLP 81 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccHH-------HHHHHHHHHHHHHHHHH-H------------------CChhhhhHH
Confidence 344444444445556666677787764 55555555555444432 1 123445667
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 022016 182 GCLFLFASACCWSLWLILQV 201 (304)
Q Consensus 182 G~~~~l~a~~~~a~~~~~~k 201 (304)
|++.-...+..+.+..+..+
T Consensus 82 gi~~n~~~~~~~l~S~lvr~ 101 (187)
T PF11361_consen 82 GIWTNAVYAVVFLVSVLVRW 101 (187)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 77777666666666555443
No 134
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.78 E-value=4.5e+02 Score=21.91 Aligned_cols=108 Identities=6% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhhhhcc--hhHHHHHHHHHHHhc-----ccccccccccchhhhHHHHHHHhHh
Q 022016 76 IFFIALLGVTINQNTYFEGLYLASSSMASAMGN--LIPAITFVMASIVGL-----EKIDLGSVRSVAKILGTIFCVGGAI 148 (304)
Q Consensus 76 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~--~~Pi~~~lla~l~~~-----er~~~~~~~~~~~~~g~~l~~~G~~ 148 (304)
+++.|++....+...++..-+....+..+++.. ...+....+...+.+ +|.++. +.+.+.+....+.
T Consensus 87 L~~~~if~~~~gi~~~f~~~~~~~~gi~tli~~~i~~G~~~~~~~~~i~~~~~~~~r~~~~------k~~~~~~~~~~~w 160 (206)
T PF06570_consen 87 LLFFGIFSLLFGIMGFFSPKNSNQYGIITLILVSIVGGLVFYFIFKYIYPYKKKKKRPSWW------KYILISVLAMVLW 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHH------HHHHHHHHHHHHH
Q ss_pred hhhhccCCccccccCCccccccccCCCCCchHHHHHHHHHHHHHHHHHHHhHHHH
Q 022016 149 SMALLRGPKLLNTEFLPEKSFLFRSSGGENWLLGCLFLFASACCWSLWLILQVPV 203 (304)
Q Consensus 149 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~ 203 (304)
+..+.-..-+. ..-+..+-+....+++++.++++..+.||.
T Consensus 161 ~~~~~~~~~lp--------------~~inp~l~~~~~iiig~i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 161 IVIFVLTSFLP--------------PVINPVLPPWVYIIIGVIAFALRFYLKKKY 201 (206)
T ss_pred HHHHHHHHHcc--------------ccCCcCCCHHHHHHHHHHHHHHHHHHHHHh
No 135
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=21.15 E-value=4.9e+02 Score=21.72 Aligned_cols=66 Identities=21% Similarity=0.273 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhccccchhh-----------hhcchhHHHHHHHHHHHhcccccc-------cccccchhhhHHHHHHHhH
Q 022016 86 INQNTYFEGLYLASSSMAS-----------AMGNLIPAITFVMASIVGLEKIDL-------GSVRSVAKILGTIFCVGGA 147 (304)
Q Consensus 86 ~~~~~~~~al~~~~~~~a~-----------~i~~~~Pi~~~lla~l~~~er~~~-------~~~~~~~~~~g~~l~~~G~ 147 (304)
-+...|..+......++.+ .+....|....++.+...+||... +-.++..++.+.++.+.|+
T Consensus 127 ~~~~~~laa~~~I~~~~~~~~~~~~~l~~y~~i~~~~~~~pll~~~~~~~r~~~~l~r~~~wl~~~~~~i~~~i~~i~G~ 206 (214)
T PF11139_consen 127 KTMLPYLAAIAIIAASGLSPGTQVVALVVYCLIASLPALLPLLAYLVAPERAEPWLERLRSWLRRHSRQILAVILLIVGA 206 (214)
T ss_pred ccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 3456677776666554433 233577888888888887777632 1223334677888888888
Q ss_pred hhhh
Q 022016 148 ISMA 151 (304)
Q Consensus 148 ~li~ 151 (304)
.++.
T Consensus 207 ~l~~ 210 (214)
T PF11139_consen 207 LLLG 210 (214)
T ss_pred HHHH
Confidence 8876
No 136
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=20.44 E-value=4.8e+02 Score=21.33 Aligned_cols=57 Identities=11% Similarity=0.044 Sum_probs=27.2
Q ss_pred HHHHHHHhhccccchhhhhcchhHHHHHHHHHHHhcccccccccccchhhhHHHHHH-HhHhhhh
Q 022016 88 QNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCV-GGAISMA 151 (304)
Q Consensus 88 ~~~~~~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~-~G~~li~ 151 (304)
-..++...++.+.-.++...-...+......++. ++|++.. ++++.++.+ .|++-+.
T Consensus 10 ~i~Ffv~y~~~~i~~At~~~i~~~~~~v~~~~~~-~r~v~~~------~~is~~lv~vfG~lTl~ 67 (176)
T PF04279_consen 10 LILFFVVYKTYGIFVATAVLIVATLAQVAYSWIR-RRKVPKM------QWISLVLVLVFGGLTLL 67 (176)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH-hCcCchh------HHHHHHHHHHHHHHHHH
Confidence 3344444455454444444444444444444443 3466665 655554443 3434333
No 137
>COG4854 Predicted membrane protein [Function unknown]
Probab=20.37 E-value=2e+02 Score=21.71 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=18.2
Q ss_pred ccchhhhHHHHHHHhHhhhhh
Q 022016 132 RSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 132 ~~~~~~~g~~l~~~G~~li~~ 152 (304)
|.+.|+..+-.++.|.+++.+
T Consensus 70 r~TiqV~~is~Al~gavl~a~ 90 (126)
T COG4854 70 RRTIQVFSISAALGGAVLLAL 90 (126)
T ss_pred heeEEEEEehHHHHHHHHHHh
Confidence 347799999999999999986
No 138
>PRK12456 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=20.24 E-value=4.4e+02 Score=22.20 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=17.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 022016 178 NWLLGCLFLFASACCWSLWLILQVPVSAS 206 (304)
Q Consensus 178 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~ 206 (304)
+...-...++.++++|.+..++..-.+++
T Consensus 136 ~~~~s~~~glg~GlGftlal~l~a~iRE~ 164 (199)
T PRK12456 136 TFTESFVYGTGCGLGWMLAIISMAGLREK 164 (199)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556677777777777666554443
Done!