Query 022016
Match_columns 304
No_of_seqs 122 out of 1751
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 12:44:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.6 6.2E-08 2.1E-12 75.4 6.1 69 78-152 34-103 (137)
2 3b5d_A Multidrug transporter E 98.4 2.2E-06 7.4E-11 64.2 10.6 69 78-152 34-103 (110)
3 2i68_A Protein EMRE; transmemb 97.4 1.7E-05 5.7E-10 61.6 -0.9 53 252-304 34-87 (137)
4 3b5d_A Multidrug transporter E 96.8 0.00012 4E-09 54.6 -1.3 51 253-303 35-86 (110)
5 1q90_R Cytochrome B6-F complex 24.2 1E+02 0.0035 18.7 3.6 36 66-101 7-42 (49)
6 3l1l_A Arginine/agmatine antip 8.3 8.1E+02 0.028 21.1 7.0 21 179-202 410-430 (445)
7 3b9w_A Ammonium transporter fa 7.4 1.2E+03 0.039 20.8 16.7 25 71-95 174-198 (407)
8 2hac_A T-cell surface glycopro 7.0 2.4E+02 0.0081 15.5 1.5 18 112-129 14-31 (33)
9 3arc_T Photosystem II reaction 4.9 5.1E+02 0.017 14.0 2.8 22 283-304 10-31 (32)
10 3mp7_B Preprotein translocase 4.1 4E+02 0.014 16.8 1.5 25 124-148 23-47 (61)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.60 E-value=6.2e-08 Score=75.38 Aligned_cols=69 Identities=13% Similarity=0.138 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhh-cchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 78 FIALLGVTINQNTYFEGLYLASSSMASAM-GNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 78 ~~g~~~~~~~~~~~~~al~~~~~~~a~~i-~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
+.+++..++++.++..++++.|++.+..+ .++.|+++.++++++++|++++. +++|+.+.+.|++++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 57777789999999999999999999999 79999999999999999999999 99999999999999975
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.43 E-value=2.2e-06 Score=64.18 Aligned_cols=69 Identities=13% Similarity=0.138 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhh-cchhHHHHHHHHHHHhcccccccccccchhhhHHHHHHHhHhhhhh
Q 022016 78 FIALLGVTINQNTYFEGLYLASSSMASAM-GNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (304)
Q Consensus 78 ~~g~~~~~~~~~~~~~al~~~~~~~a~~i-~~~~Pi~~~lla~l~~~er~~~~~~~~~~~~~g~~l~~~G~~li~~ 152 (304)
..+.+..++++.++..++++.|.+.+..+ ..+.|+++.+++++++||++++. |+.|+.+.+.|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 56677778999999999999999999998 69999999999999999999999 99999999999999873
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.39 E-value=1.7e-05 Score=61.56 Aligned_cols=53 Identities=11% Similarity=0.056 Sum_probs=38.4
Q ss_pred HHHhhccchheeeeeeeecccCceeeeec-cchHHHHHHHHHHHHhCCccccCC
Q 022016 252 FSGAIGSGVSFCVQAWCISKRGPLFSAMF-NPLCTVIVTILAALLLHEEIYTGR 304 (304)
Q Consensus 252 ~~g~~~~~~~~~l~~~~~~~~~a~~~s~~-~~l~pv~a~l~~~~~~~e~~~~~~ 304 (304)
..++++++++|.+|.+++|+++++++.++ ..+.|+++.+++++++||++++.+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~ 87 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA 87 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 36677889999999999999999999999 899999999999999999998753
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=96.79 E-value=0.00012 Score=54.60 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=46.5
Q ss_pred HHhhccchheeeeeeeecccCceeeeec-cchHHHHHHHHHHHHhCCccccC
Q 022016 253 SGAIGSGVSFCVQAWCISKRGPLFSAMF-NPLCTVIVTILAALLLHEEIYTG 303 (304)
Q Consensus 253 ~g~~~~~~~~~l~~~~~~~~~a~~~s~~-~~l~pv~a~l~~~~~~~e~~~~~ 303 (304)
.++++.++++.++.+++|+.|.+.+.++ ..+.|+.+.+.+++++||++|..
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~ 86 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH
Confidence 5566778899999999999999999998 89999999999999999999864
No 5
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=24.18 E-value=1e+02 Score=18.65 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 022016 66 SSMGLRSFSLIFFIALLGVTINQNTYFEGLYLASSS 101 (304)
Q Consensus 66 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~ 101 (304)
+..+||++...+..|..+......++=+.-..+++.
T Consensus 7 pdm~RRqfln~l~~G~~a~~a~~~~~P~v~ffvpP~ 42 (49)
T 1q90_R 7 PDMNKRNIMNLILAGGAGLPITTLALGYGAFFVPPS 42 (49)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhheeecCCc
Confidence 567899999988888887555555555555555554
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=8.30 E-value=8.1e+02 Score=21.15 Aligned_cols=21 Identities=5% Similarity=0.082 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHH
Q 022016 179 WLLGCLFLFASACCWSLWLILQVP 202 (304)
Q Consensus 179 ~~~G~~~~l~a~~~~a~~~~~~k~ 202 (304)
...|..+.+.+. .+|....|+
T Consensus 410 ~~~~~~~~~~g~---~~y~~~~~~ 430 (445)
T 3l1l_A 410 VMWSFVTLMVIT---AMYALNYNR 430 (445)
T ss_dssp HHHHHHHHHHHH---HHHHHHHST
T ss_pred HHHHHHHHHHHH---HHHHHHhhh
Confidence 445555444443 344444444
No 7
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=7.39 E-value=1.2e+03 Score=20.79 Aligned_cols=25 Identities=0% Similarity=-0.013 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 022016 71 RSFSLIFFIALLGVTINQNTYFEGL 95 (304)
Q Consensus 71 ~~~~~~~~~g~~~~~~~~~~~~~al 95 (304)
..-..+..+|.+-.-.++..++-++
T Consensus 174 ~hn~~~~~lGt~lLW~GWfGFN~Gl 198 (407)
T 3b9w_A 174 ATSDRFSMLGSMVLWLFWPSFATAI 198 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 3344556666666678888888884
No 8
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=6.97 E-value=2.4e+02 Score=15.46 Aligned_cols=18 Identities=6% Similarity=0.047 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhccccccc
Q 022016 112 AITFVMASIVGLEKIDLG 129 (304)
Q Consensus 112 i~~~lla~l~~~er~~~~ 129 (304)
+..+++..++.+||+...
T Consensus 14 iYgii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 14 IYGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 455667777788887653
No 9
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=4.90 E-value=5.1e+02 Score=14.03 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhCCccccCC
Q 022016 283 LCTVIVTILAALLLHEEIYTGR 304 (304)
Q Consensus 283 l~pv~a~l~~~~~~~e~~~~~~ 304 (304)
+.--.++++-.++|+|++...+
T Consensus 10 l~~tlgiiFFAI~FRePPri~~ 31 (32)
T 3arc_T 10 FACIIALFFFAIFFREPPRITK 31 (32)
T ss_dssp HHHHHHHHHHHHHTSCCCCCC-
T ss_pred HHHHHHHHHHhhhhcCCCCCCC
No 10
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=4.08 E-value=4e+02 Score=16.76 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=0.0
Q ss_pred ccccccccccchhhhHHHHHHHhHh
Q 022016 124 EKIDLGSVRSVAKILGTIFCVGGAI 148 (304)
Q Consensus 124 er~~~~~~~~~~~~~g~~l~~~G~~ 148 (304)
.|+++.+-...++..++.+.++|.+
T Consensus 23 ~KPd~~Ef~~iak~~~iG~~i~G~i 47 (61)
T 3mp7_B 23 KKPNWATYKRAAKITGLGIILIGLI 47 (61)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Done!