Query 022016
Match_columns 304
No_of_seqs 122 out of 1751
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 12:44:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022016.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022016hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90r_ f.23.12.1 (R:) ISP sub 23.7 52 0.0038 17.5 3.6 34 66-99 5-38 (39)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 11.3 90 0.0065 14.6 2.6 19 180-198 2-20 (27)
3 d1u7ga_ f.44.1.1 (A:) Ammonium 9.1 4.4E+02 0.032 21.1 16.7 44 188-233 289-332 (383)
4 d1wpga4 f.33.1.1 (A:1-124,A:24 7.1 5.6E+02 0.041 20.7 14.6 64 35-98 265-337 (472)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 4.8 2.2E+02 0.016 13.4 2.1 15 287-301 14-28 (30)
6 d1gl4a1 d.22.1.2 (A:399-631) D 3.7 1.3E+02 0.0092 22.9 0.5 36 93-129 43-78 (233)
7 d1q90a3 f.23.23.1 (A:248-292) 3.6 3.7E+02 0.027 14.3 3.7 29 178-206 3-31 (45)
8 d1vf5c3 f.23.23.1 (C:250-286) 2.2 5.1E+02 0.037 13.1 3.3 28 178-205 4-31 (37)
9 d2axtl1 f.23.31.1 (L:1-37) Pho 2.0 5.6E+02 0.041 12.7 2.8 20 178-197 16-35 (37)
10 d1rh5b_ f.23.28.1 (B:) Preprot 1.8 7.4E+02 0.054 13.7 3.1 20 180-199 29-48 (56)
No 1
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=23.73 E-value=52 Score=17.50 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 022016 66 SSMGLRSFSLIFFIALLGVTINQNTYFEGLYLAS 99 (304)
Q Consensus 66 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~ 99 (304)
+...||++..++..|.+.......++=++....|
T Consensus 5 pDMgrR~~MNLll~G~~~~~~~g~l~py~~fFvP 38 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAGLPITTLALGYGAFFVP 38 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cchhHHHHHHHHHHhccchhhhhhccceeEEecC
Confidence 5556888888888888876665555555444433
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.33 E-value=90 Score=14.60 Aligned_cols=19 Identities=16% Similarity=0.322 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022016 180 LLGCLFLFASACCWSLWLI 198 (304)
Q Consensus 180 ~~G~~~~l~a~~~~a~~~~ 198 (304)
..|.+.+-++++.||.|.-
T Consensus 2 vlgli~~tl~glf~aayqq 20 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 3678888888898888863
No 3
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=9.13 E-value=4.4e+02 Score=21.10 Aligned_cols=44 Identities=11% Similarity=-0.032 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcC
Q 022016 188 ASACCWSLWLILQVPVSASYPDHLSLSAWMCFLATLQSATFAIFTE 233 (304)
Q Consensus 188 ~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 233 (304)
.+.+|+-.+..+.||. +.+|+..........|..-.+...++..
T Consensus 289 ~g~i~~~~~~~l~~~~--~iDD~~~~~~vHg~~Gi~G~l~~glfa~ 332 (383)
T d1u7ga_ 289 AGLAGLWGVTMLKRLL--RVDDPCDVFGVHGVCGIVGCIMTGIFAA 332 (383)
T ss_dssp HHHHHHHHHHHHHHHH--CSCCGGGHHHHHHHHHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHHHHhhc--ccccccceEeehhhhHHHHHHHHHHhcC
Confidence 3445554555454443 3457888888877666666655555443
No 4
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=7.08 E-value=5.6e+02 Score=20.70 Aligned_cols=64 Identities=9% Similarity=-0.029 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHH------hhhcccc---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022016 35 MNPRVFVVYRQAIATLFMAPMAY------LSSRKYK---SSSMGLRSFSLIFFIALLGVTINQNTYFEGLYLA 98 (304)
Q Consensus 35 ~~p~~~~~~R~~~a~~~l~~~~~------~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~ 98 (304)
++|.++.+.-++.-.+.-..+.. ..+++++ .+.++++.+......|..........+++...+.
T Consensus 265 l~~~qILwinli~d~lpaiaL~~ep~d~~iM~~~Pr~~~~~li~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~ 337 (472)
T d1wpga4 265 LIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYA 337 (472)
T ss_dssp CCHHHHHHHHHTTTHHHHHHHTTCCCCSGGGGSCCCCTTCCSSCTHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred ccHHHHHHHHHHhHHHHHHHHhcCCCchhhhcCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888888877766554443322 1111211 1344677777766666665455555666665543
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.83 E-value=2.2e+02 Score=13.44 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=7.9
Q ss_pred HHHHHHHHHhCCccc
Q 022016 287 IVTILAALLLHEEIY 301 (304)
Q Consensus 287 ~a~l~~~~~~~e~~~ 301 (304)
.++.+-.+++.|++.
T Consensus 14 i~lfffaiffreppr 28 (30)
T d2axtt1 14 IALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHhcCCCC
Confidence 344444556677653
No 6
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.66 E-value=1.3e+02 Score=22.87 Aligned_cols=36 Identities=8% Similarity=0.136 Sum_probs=30.8
Q ss_pred HHhhccccchhhhhcchhHHHHHHHHHHHhccccccc
Q 022016 93 EGLYLASSSMASAMGNLIPAITFVMASIVGLEKIDLG 129 (304)
Q Consensus 93 ~al~~~~~~~a~~i~~~~Pi~~~lla~l~~~er~~~~ 129 (304)
.+++.+|+..+..+..+.|+.. .++|++-+|.-...
T Consensus 43 taIs~IP~~~G~~L~~L~~ig~-~igWlFA~e~~~a~ 78 (233)
T d1gl4a1 43 TAISTIPETVGYSLLPLAPIGG-IIGWMFAVEQDGFK 78 (233)
T ss_dssp EEEESCCHHHHGGGTTCTHHHH-HHHHHTCEECTTCC
T ss_pred EEccCCChhHhhhhhhhhhhcC-ceeeeEEeecCCcc
Confidence 4677888899999999999887 78999999998876
No 7
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.61 E-value=3.7e+02 Score=14.32 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 022016 178 NWLLGCLFLFASACCWSLWLILQVPVSAS 206 (304)
Q Consensus 178 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~ 206 (304)
....|.+..+++.+.--+..++-||-.++
T Consensus 3 ~Rv~gll~F~~~v~laQi~LVLKKKQfEK 31 (45)
T d1q90a3 3 ARIQGLLVFFSFVLLTQVLLVLKKKQFEK 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777777777777665444
No 8
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.25 E-value=5.1e+02 Score=13.12 Aligned_cols=28 Identities=18% Similarity=0.061 Sum_probs=16.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 022016 178 NWLLGCLFLFASACCWSLWLILQVPVSA 205 (304)
Q Consensus 178 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~ 205 (304)
....|.+..+++.+.--+..++-||-.+
T Consensus 4 ~Rv~gl~~F~~~v~laQi~lVlKKKQ~E 31 (37)
T d1vf5c3 4 NRVKWMIAFICLVMLAQLMLILKKKQVE 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557776666666666666666555443
No 9
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.96 E-value=5.6e+02 Score=12.75 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=15.5
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 022016 178 NWLLGCLFLFASACCWSLWL 197 (304)
Q Consensus 178 ~~~~G~~~~l~a~~~~a~~~ 197 (304)
....|.++.++-++.|+-|.
T Consensus 16 sLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 16 SLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 44588888888888888775
No 10
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=1.81 E-value=7.4e+02 Score=13.74 Aligned_cols=20 Identities=0% Similarity=-0.104 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 022016 180 LLGCLFLFASACCWSLWLIL 199 (304)
Q Consensus 180 ~~G~~~~l~a~~~~a~~~~~ 199 (304)
..|..+.+.+.++|.++.+.
T Consensus 29 v~~iG~~i~G~IGf~I~li~ 48 (56)
T d1rh5b_ 29 VTALGISLLGIIGYIIHVPA 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666777777888777654
Done!