Query 022017
Match_columns 304
No_of_seqs 138 out of 1137
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:23:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02724 Molybdenum cofactor s 100.0 2.1E-65 4.7E-70 530.4 28.7 269 3-293 516-803 (805)
2 COG3217 Uncharacterized Fe-S p 100.0 1E-62 2.2E-67 435.3 22.9 263 5-297 2-266 (270)
3 KOG2362 Uncharacterized Fe-S p 100.0 7.3E-62 1.6E-66 434.6 17.0 291 2-299 40-336 (336)
4 PF03476 MOSC_N: MOSC N-termin 100.0 8.7E-34 1.9E-38 229.8 7.1 119 4-132 1-120 (120)
5 PF03473 MOSC: MOSC domain; I 100.0 3.7E-29 8E-34 205.9 8.9 120 155-292 11-133 (133)
6 KOG2142 Molybdenum cofactor su 99.3 6.6E-13 1.4E-17 130.4 3.7 198 6-239 465-671 (728)
7 PRK14499 molybdenum cofactor b 98.6 1.1E-07 2.5E-12 88.4 9.2 103 163-294 203-307 (308)
8 PRK11536 6-N-hydroxylaminopuri 98.1 2.8E-05 6.1E-10 69.3 10.7 107 163-297 55-167 (223)
9 COG2258 Uncharacterized protei 98.0 2.3E-05 5E-10 68.8 8.8 107 164-298 56-165 (210)
10 KOG3347 Predicted nucleotide k 46.3 11 0.00024 31.9 1.3 28 186-213 3-40 (176)
11 PF05962 HutD: HutD; InterPro 45.7 65 0.0014 27.8 6.1 51 4-54 15-73 (184)
12 PRK14499 molybdenum cofactor b 26.5 76 0.0017 29.8 3.6 36 3-38 161-197 (308)
13 PF11132 SplA: Transcriptional 23.7 55 0.0012 23.9 1.6 19 283-301 5-23 (75)
14 PRK00359 rpmB 50S ribosomal pr 21.0 86 0.0019 23.1 2.3 12 184-195 24-35 (76)
15 COG4416 Com Mu-like prophage p 20.2 59 0.0013 22.4 1.1 13 218-230 23-35 (60)
No 1
>PLN02724 Molybdenum cofactor sulfurase
Probab=100.00 E-value=2.1e-65 Score=530.39 Aligned_cols=269 Identities=32% Similarity=0.561 Sum_probs=233.8
Q ss_pred CceEEeeeeeeecCCCCceeeceeeecccccccCceeEEEecCCCeEecCCCCceEEEEEecCCcccccCccCCCCceEE
Q 022017 3 AAGKVTSIFVYPIKSCRGISVSQAPLTPTGFRWDRQWMVINNKGRAYTQRNEPKLALVQIELPNEAFLEGWEPTGSSYMV 82 (304)
Q Consensus 3 ~~~~V~~L~~yPVKS~~g~~v~~~~l~~~Gl~~DR~~ai~d~~g~~~t~r~~p~l~~i~~~~~~~~~~~~~~~~~~~~l~ 82 (304)
..++|++|||||||||+|++|++|+|++.||.|||+|||+|++|+++|||++|+|++|++.++.+ ++.|+
T Consensus 516 ~~~~v~~l~iYPVKS~~g~~v~~a~~~~~Gl~~DR~~~lvd~~g~~~t~r~~p~l~~i~~~~~~~----------~~~l~ 585 (805)
T PLN02724 516 DSHRLKSITVYPIKSCAGFSVERWPLSETGLLYDREWMIQSLTGEILTQKKVPEMCLITTFIDLE----------SGKLV 585 (805)
T ss_pred CCCEEEEEEEeccccCCCceeeEEEEecccccccceEEEEcCCCcEEEcccCceEEEEEeEEecC----------CCeEE
Confidence 35689999999999999999999999999999999999999999999999999999999999532 46799
Q ss_pred EEeCCCC-eeEEeCCCCC--CCccceEEecccccccccchHHHHHHHHHhCCceEEEEecCCCCCCCCC-----cccc--
Q 022017 83 IRAPGMQ-ALKIPMSKPC--DIADGVSVWEWSGSALDEGAEASNWFTNYLGKSSRLVRYNAESETRPVD-----PEYA-- 152 (304)
Q Consensus 83 l~~~~~~-~l~v~l~~~~--~~~~~~~~~~~~~~~~d~g~~~~~wls~~lg~~~rLv~~~~~~~~r~~~-----~~~~-- 152 (304)
+++|+++ ++.|++.... .....+++|++.+.+++||+++++|||++||++|+|+++.+... |..+ +.+.
T Consensus 586 l~~~~~~~~l~v~l~~~~~~~~~~~v~v~~~~~~~~~~g~~~~~w~S~~lg~~~~Lv~~~~~~~-r~~~~~~~~~~~~~~ 664 (805)
T PLN02724 586 VRAPRCDHKLEIPLESDSQHEESGEVILCGNRAESMSYGTEINEWFTNALGRRCTLVRKSSSNT-RVCRNRNPSHSPCGD 664 (805)
T ss_pred EEcCCCCccEEEeCCCcccccccceeEEeCCcceeEecchhHHHHHHHHhCCceEEEEeCCccc-ccccccccccccccC
Confidence 9999987 6999997643 23457899999999999999999999999999999999976543 3221 1111
Q ss_pred CCceeecCCCCceeeeeHhHHHHHHHHhCC-------CCCCCcceeeEEEeCCCCCCCCCcceEEECceEEEEeecCCCc
Q 022017 153 AGQITMFSDGYPFMLLSQGSLDALNKLLKE-------PVPINRFRPNILVDGCEPFSEDTWTEVRINKFTFQGVKLCSRC 225 (304)
Q Consensus 153 ~~~~~~f~D~~p~~lis~aSl~~l~~~l~~-------~v~~~RFRpNIvi~g~~pf~Ed~W~~l~IG~~~~~~~~~c~RC 225 (304)
.....+|+|.+||||+|++||++||+++++ +++++||||||||+|.+||+||.|++|+||++.|++++||.||
T Consensus 665 ~~~~~~faD~~p~llis~aSl~~Ln~~l~~~~~~~~~~v~~~RFRpNiVv~g~~~f~ED~W~~l~IG~~~~~~~~~C~RC 744 (805)
T PLN02724 665 DESRLSFANEGQFLLISEASVEDLNRRLATGQEDAKIRLDPTRFRPNLVVSGGEAYAEDEWQSLSIGDAEFTVLGGCNRC 744 (805)
T ss_pred cCCceeecCCCceEEecHHHHHHHHHHhccccccccCCCcHHHccceEEECCCCCccccCceEEEECCEEEEEecccCCC
Confidence 124579999999999999999999999973 6999999999999999999999999999999999999999999
Q ss_pred ccceeeCCCCCC--CCChhHHHHHhhcccccCcCcccCCccccceeeEEeccCCCCCCCEEEeCCeEEEe
Q 022017 226 KIPTINQDTGDA--GPEPNETLKQIRSDKVLRPGRKQRGKIYFGQNMVCKDNLTEGNGKVLKLGDPVFVL 293 (304)
Q Consensus 226 ~~~~vdp~tg~~--~~~pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~G~~I~vGD~v~v~ 293 (304)
+||||||+||++ +.+||+||++||. ..++++||+|++... ...+.| +|+|||.|++.
T Consensus 745 ~~~tvDp~tg~~~~~~epl~tL~~~R~---------~~~~~~FG~~~~~~~-~~~~~~-~i~vGd~v~~~ 803 (805)
T PLN02724 745 QMINIDQETGLVNPSNEPLATLASYRR---------VKGKILFGILLRYEI-SDKRDQ-WIAVGSRVNPR 803 (805)
T ss_pred CCCcCCcccCccCCCCChHHHHHHHhC---------cCCCCCccceeeccc-cCCCCc-EEEeCCEEEec
Confidence 999999999986 5799999999994 347899999987631 112445 99999999874
No 2
>COG3217 Uncharacterized Fe-S protein [General function prediction only]
Probab=100.00 E-value=1e-62 Score=435.29 Aligned_cols=263 Identities=32% Similarity=0.609 Sum_probs=235.1
Q ss_pred eEEeeeeeeecCCCCceeeceeeecccccccCceeEEEecCCCeEecCCCCceEEEEEecCCcccccCccCCCCceEEEE
Q 022017 5 GKVTSIFVYPIKSCRGISVSQAPLTPTGFRWDRQWMVINNKGRAYTQRNEPKLALVQIELPNEAFLEGWEPTGSSYMVIR 84 (304)
Q Consensus 5 ~~V~~L~~yPVKS~~g~~v~~~~l~~~Gl~~DR~~ai~d~~g~~~t~r~~p~l~~i~~~~~~~~~~~~~~~~~~~~l~l~ 84 (304)
.+|++||||||||++|+.++++.+...||.+||+|||+|.+|.++|+|++|+|.++++...+ ..++++
T Consensus 2 ~~ls~L~iyPvKSl~g~~l~~a~v~~~Gl~~DR~fml~d~dG~~itar~~pa~~~~~~~~~~------------~~~~l~ 69 (270)
T COG3217 2 ATLSQLYIYPVKSLRGERLSRALVDASGLAGDRRFMLVDPDGRFITARRRPAMVRFTPAYEH------------DGLRLT 69 (270)
T ss_pred ccchheeeeccccccchhhhhheeeccCCccceEEEEEcCCCceeccccccceeEeeeeccc------------cceEEe
Confidence 46999999999999999999999999999999999999999999999999999999995422 357888
Q ss_pred eCCCCeeEEeCCCCCCCccceEEecccccccccchHHHHHHHHHhCCceEEEEecCCCCCCCCCccccCCceeecCCCCc
Q 022017 85 APGMQALKIPMSKPCDIADGVSVWEWSGSALDEGAEASNWFTNYLGKSSRLVRYNAESETRPVDPEYAAGQITMFSDGYP 164 (304)
Q Consensus 85 ~~~~~~l~v~l~~~~~~~~~~~~~~~~~~~~d~g~~~~~wls~~lg~~~rLv~~~~~~~~r~~~~~~~~~~~~~f~D~~p 164 (304)
+++.+.+.+.... .+..+++||++.......++++++|||.|||++++|+..+.+..++ .+. ......+|+|++|
T Consensus 70 ~~~~~~~~v~~~~--~~~~~~~vw~~~~~a~~~~~a~~d~lS~flg~~v~L~~~~~~~~r~-v~~--~p~~~~~fadg~p 144 (270)
T COG3217 70 APDGEELYVRFAD--AQRAPVEVWGDHFTADAAGDAANDWLSGFLGRAVSLRWDGAGFARR-VKA--GPAVPVTFADGYP 144 (270)
T ss_pred cCCCccceeeccc--cccccceeeccccccccchhHHHHHHHhhhceeeEEEecCcccccc-ccC--CCceeeEecCCce
Confidence 9988888877654 4567899999999998999999999999999999999987644332 221 1345689999999
Q ss_pred eeeeeHhHHHHHHHHhCCCCCCCcceeeEEEeCCCCCCCCCcceEEECceEEEEeecCCCcccceeeCCCCCC--CCChh
Q 022017 165 FMLLSQGSLDALNKLLKEPVPINRFRPNILVDGCEPFSEDTWTEVRINKFTFQGVKLCSRCKIPTINQDTGDA--GPEPN 242 (304)
Q Consensus 165 ~~lis~aSl~~l~~~l~~~v~~~RFRpNIvi~g~~pf~Ed~W~~l~IG~~~~~~~~~c~RC~~~~vdp~tg~~--~~~pl 242 (304)
+|++|++||++|+++.+..++++|||||||++|.++|+||.|+.|+||++.|.+++||.||++||+||+||++ +.+|+
T Consensus 145 ~l~~~~aSl~dL~~r~~~~~~merFRpNlvv~ge~a~aEd~w~~i~IG~v~F~~vkPC~RCi~Ttvd~~tGe~~p~~~p~ 224 (270)
T COG3217 145 ILLFNTASLADLRRRVPANLEMERFRPNLVVEGEDAFAEDSWKSIRIGGVRFDVVKPCSRCIFTTVDPDTGERRPGGEPL 224 (270)
T ss_pred EEEEccccHHHHhhhccCCCChhhCCCceEEeecccccccCceEEEEccEEEEEeccchhcceeeECCcccccCCCCChh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 48999
Q ss_pred HHHHHhhcccccCcCcccCCccccceeeEEeccCCCCCCCEEEeCCeEEEeEecC
Q 022017 243 ETLKQIRSDKVLRPGRKQRGKIYFGQNMVCKDNLTEGNGKVLKLGDPVFVLKKVT 297 (304)
Q Consensus 243 ~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~G~~I~vGD~v~v~~~~~ 297 (304)
.+|+++|... ..++..||+|+++. ..| .|++||.|+++...+
T Consensus 225 ~~~~~~R~~~-------d~~~~~FG~n~~a~-----~~g-~ir~Gd~ve~l~~~~ 266 (270)
T COG3217 225 FTLNRFRTNP-------DAGGVLFGQNLIAR-----NEG-RIRVGDAVEVLAVGP 266 (270)
T ss_pred HHHHhhhccc-------ccCcccccceEEec-----cCc-ceecCcceeEEEecc
Confidence 9999999621 14679999999998 677 999999999999877
No 3
>KOG2362 consensus Uncharacterized Fe-S protein [General function prediction only]
Probab=100.00 E-value=7.3e-62 Score=434.64 Aligned_cols=291 Identities=43% Similarity=0.725 Sum_probs=247.2
Q ss_pred CCceEEeeeeeeecCCCCceeeceeeecccc----cccCceeEEEecCCCeEecCCCCceEEEEEecCCcccccCccCC-
Q 022017 2 EAAGKVTSIFVYPIKSCRGISVSQAPLTPTG----FRWDRQWMVINNKGRAYTQRNEPKLALVQIELPNEAFLEGWEPT- 76 (304)
Q Consensus 2 ~~~~~V~~L~~yPVKS~~g~~v~~~~l~~~G----l~~DR~~ai~d~~g~~~t~r~~p~l~~i~~~~~~~~~~~~~~~~- 76 (304)
.+.++|++|+|||||||+|.+|.+..+|..| ...||.|++++.+|+++|+|..|.|++|+.......+...|...
T Consensus 40 ~~vg~v~slhiyPiKSC~~~~v~q~~ct~~g~~~e~~~DR~~lvVn~kg~~iTaRv~P~l~~ies~~~~~~~~v~~~~~~ 119 (336)
T KOG2362|consen 40 VPVGRVKSLHIYPIKSCKGIDVFQYKCTPLGPSMEFLWDRTFLVVNEKGKFITARVKPKLVLIESEMPDGAFLVDWPGPE 119 (336)
T ss_pred EEeeeeeeeEEEEeccccccchhHhhcCCCCcchhheeeceEEEEeccceEEEeeccceEEEeecccccceeEEecCCCc
Confidence 4678999999999999999999999999988 78899999999999999999999999999998776666666543
Q ss_pred CCceEEEEeCCCCeeEEeCCCCCCCccceEEecccccccccchHHHHHHHHHhCCceEEEEecCCCCCCCCCccccCCce
Q 022017 77 GSSYMVIRAPGMQALKIPMSKPCDIADGVSVWEWSGSALDEGAEASNWFTNYLGKSSRLVRYNAESETRPVDPEYAAGQI 156 (304)
Q Consensus 77 ~~~~l~l~~~~~~~l~v~l~~~~~~~~~~~~~~~~~~~~d~g~~~~~wls~~lg~~~rLv~~~~~~~~r~~~~~~~~~~~ 156 (304)
....+....++++.+.+.+.......+...+|.+...+.+.+.+..+|+..+.++++++.++.....++...|.+.++..
T Consensus 120 ~~s~~~~~~l~~~~~~~~t~~~~~~~dg~~cgd~~~~~~s~~~e~~~~~~~~~~~~~~~er~~~~~~~~~~~p~~~~~d~ 199 (336)
T KOG2362|consen 120 KDSVLVFRVLGNKRLKVATLFPDLSADGYDCGDWVASAFSEGIEEPNWRLIFVGKGLYTERTNKPDETWWNNPVPKRGDS 199 (336)
T ss_pred chhhhhhhhccCCccccccccccceeeccccHhhhhhhHHhhhhccchhhhhhcCcceeeecccCCccccCCCccCcccc
Confidence 34455666677776666654433344444555555555555555666666677888999998777777778888888889
Q ss_pred eecCCCCceeeeeHhHHHHHHHHhCCCCCCCcceeeEEEeCCCCCCCCCcceEEECceEEEEeecCCCcccceeeCCCCC
Q 022017 157 TMFSDGYPFMLLSQGSLDALNKLLKEPVPINRFRPNILVDGCEPFSEDTWTEVRINKFTFQGVKLCSRCKIPTINQDTGD 236 (304)
Q Consensus 157 ~~f~D~~p~~lis~aSl~~l~~~l~~~v~~~RFRpNIvi~g~~pf~Ed~W~~l~IG~~~~~~~~~c~RC~~~~vdp~tg~ 236 (304)
+.|+|.+|+||+|++||++||.+|.++|+++||||||+|+|+.||+||.|.+|+||+++|+.+++|+||.+|||||+||+
T Consensus 200 ~~f~D~~Pfli~s~aSL~dLNt~L~~~V~~~~FRpnI~vdgc~~~~ED~W~ei~Igd~~~~~v~~CtRCiltTV~petG~ 279 (336)
T KOG2362|consen 200 TTFSDLAPFLIASQASLDDLNTRLDKPVPMNNFRPNIVVDGCDAFAEDKWDEIRIGDAEFQCVAPCTRCILTTVDPETGE 279 (336)
T ss_pred ccccccchhhhhchhhHHHHHhhhcCCccHhhcccceEEecCccccccccceEEEccEEEEEEeeccceeeeeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-ChhHHHHHhhcccccCcCcccCCccccceeeEEeccCCCCCCCEEEeCCeEEEeEecCch
Q 022017 237 AGP-EPNETLKQIRSDKVLRPGRKQRGKIYFGQNMVCKDNLTEGNGKVLKLGDPVFVLKKVTSA 299 (304)
Q Consensus 237 ~~~-~pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~G~~I~vGD~v~v~~~~~~~ 299 (304)
++. +|+++|++||.+. ..+.....++++||+|+... +.| +|+|||.|+|+.+.+++
T Consensus 280 ~~k~qpletLr~fR~~~-~~~~~~~~~sp~fGv~~~~~-----~~g-~I~vGd~Vyv~~k~~~~ 336 (336)
T KOG2362|consen 280 MSKMQPLETLREFRLDP-GKPRKVHMGSPLFGVYAGLV-----NEG-TIKVGDTVYVLYKPSSF 336 (336)
T ss_pred ccccCchhhHHhhhcCC-cccccccCCCcccceeeccc-----ccc-eEEeCCEEEEEecCCCC
Confidence 986 9999999999865 33445668899999999988 788 99999999999887653
No 4
>PF03476 MOSC_N: MOSC N-terminal beta barrel domain; InterPro: IPR005303 This domain is found to the N terminus of MOSC domain (IPR005302 from INTERPRO). The function of this domain is unknown, however it is predicted to adopt a beta barrel fold.; PDB: 2EXN_A.
Probab=100.00 E-value=8.7e-34 Score=229.77 Aligned_cols=119 Identities=42% Similarity=0.839 Sum_probs=65.1
Q ss_pred ceEEeeeeeeecCCCCceeeceeeecccccc-cCceeEEEecCCCeEecCCCCceEEEEEecCCcccccCccCCCCceEE
Q 022017 4 AGKVTSIFVYPIKSCRGISVSQAPLTPTGFR-WDRQWMVINNKGRAYTQRNEPKLALVQIELPNEAFLEGWEPTGSSYMV 82 (304)
Q Consensus 4 ~~~V~~L~~yPVKS~~g~~v~~~~l~~~Gl~-~DR~~ai~d~~g~~~t~r~~p~l~~i~~~~~~~~~~~~~~~~~~~~l~ 82 (304)
|++|++||+||||||+|++|++++|++.||. |||+|||+|++|+|+|+|++|+|++|++.++.+ ++.|+
T Consensus 1 m~~v~~L~iyPIKS~~g~~~~~~~~~~~Gl~~~DR~~~l~d~~g~~it~r~~P~l~~i~~~~~~~----------~~~l~ 70 (120)
T PF03476_consen 1 MGRVSSLYIYPIKSCRGIEVDEAEVTPSGLKAGDRRFMLVDEDGRFITQRQYPRLALIRPEIDED----------DGTLT 70 (120)
T ss_dssp -------------------------------GT--SEEEEETTS-EE-TTT-GGGG--EEEE-------------SSEEE
T ss_pred CccccccccccccccccccccccccccccCCccchhheeECCCCCEEeeccCcceeeEEEEeecc----------eeEEE
Confidence 5899999999999999999999999999996 999999999999999999999999999999632 57899
Q ss_pred EEeCCCCeeEEeCCCCCCCccceEEecccccccccchHHHHHHHHHhCCc
Q 022017 83 IRAPGMQALKIPMSKPCDIADGVSVWEWSGSALDEGAEASNWFTNYLGKS 132 (304)
Q Consensus 83 l~~~~~~~l~v~l~~~~~~~~~~~~~~~~~~~~d~g~~~~~wls~~lg~~ 132 (304)
+++|+++.+.+++.........+.+|++.+.+++||+++++|||++||+|
T Consensus 71 l~~~~~~~l~i~~~~~~~~~~~v~v~~~~~~~~~~gd~~~~WfS~~Lg~p 120 (120)
T PF03476_consen 71 LSAPGMPPLEIPLPDSTGPRTEVQVWGDTVEAYDCGDEASEWFSEFLGRP 120 (120)
T ss_dssp EE-SSS-EEEEESSSS-S-EEEEEETTEEEEEEE--HHHHHHHHHHT---
T ss_pred EECCCCceEEEEcccccCCEeeEEEECCEeEEEECCHHHHHHHHHHHCcC
Confidence 99999999999998555667789999999999999999999999999986
No 5
>PF03473 MOSC: MOSC domain; InterPro: IPR005302 Molybdenum cofactor (MOCO) sulphurases [] catalyse the insertion of a terminal sulphur ligand into the molybdenum cofactor, thereby converting the oxo form of MOCO to a sulphurylated form. Suphurylated MOCO is required by several enzymes, including: aldehyde oxidase (1.2.3.1 from EC), which function in the last step of abscisic acid biosynthesis in plants []; and xanthine dehydrogenase (1.17.1.4 from EC), which synthesis uric acid from xanthine during nitrogen metabolism []. This entry represents the beta-barrel C-terminal domain of MOCO sulphurase (MOSC domain), which has a beta-barrel structure similar to that of the beta-barrel domain in pyruvate kinase and contains a highly conserved cysteine residue required for activity. MOSC domains are found in several diverse metal-sulphur cluster biosynthesis proteins from both eukaryotes and prokaryotes. MOSC domains occu as either stand-alone forms, such as the YiiM protein from Escherichia coli, or fused to other domains, such as a NifS-like catalytic domain in MOCO sulphurase. The MOSC domain is predicted to be a sulphur-carrier domain that receives sulphur abstracted from pyridoxal phosphate-dependent NifS-like enzymes, on its conserved cysteine, and delivers it for the formation of diverse sulphur-metal clusters []. The MOSC domain contains several patches of hydrophobic residues and an absolutely conserved cysteine residue situated closer to the C-terminal end of the domain. The absolutely conserved cysteine in the MOSC domain is reminiscent of the analogous conservation of a cysteine in the active site of the thioredoxin and rhodanese superfamilies. Members of both these superfamilies, especially of the latter one, have been implicated in the synthesis of Fe-S clusters, through mobilisation of sulphur with their active cysteine. ; GO: 0003824 catalytic activity, 0030151 molybdenum ion binding, 0030170 pyridoxal phosphate binding; PDB: 1ORU_B 1O67_C 1O65_C.
Probab=99.96 E-value=3.7e-29 Score=205.94 Aligned_cols=120 Identities=39% Similarity=0.622 Sum_probs=93.3
Q ss_pred ceeecCCCCceeeeeHhHHHHHHHHhCCCC-CCCcceeeEEEeCCCCCCCCCc--ceEEECceEEEEeecCCCcccceee
Q 022017 155 QITMFSDGYPFMLLSQGSLDALNKLLKEPV-PINRFRPNILVDGCEPFSEDTW--TEVRINKFTFQGVKLCSRCKIPTIN 231 (304)
Q Consensus 155 ~~~~f~D~~p~~lis~aSl~~l~~~l~~~v-~~~RFRpNIvi~g~~pf~Ed~W--~~l~IG~~~~~~~~~c~RC~~~~vd 231 (304)
....|.|.+|+||+|++|+++|+++++.+. ++.||||||+|+|.+||+||.| +.++||++.|+++++|.||.++++|
T Consensus 11 ~~~~~~d~~~v~l~s~~s~~~l~~~~~~~~~~~~rFR~Nivv~g~~~f~Ed~w~~~~l~iG~~~l~v~~~~~rC~~~~~~ 90 (133)
T PF03473_consen 11 YKHHFGDERPVSLISQESLDALNARLGEPGLDPRRFRPNIVVDGLPPFDEDDWCGDRLRIGDAVLEVTQPCPRCVMPNVD 90 (133)
T ss_dssp -----GCGGSEEEEECHHHHHHHHHCCCCGGSCCCCT-SEEECS-T---TCCGBTEEEECTTEEEEEEEE----CHHHHH
T ss_pred CcccCCCCCceeeccHHHHHHHHhhhccccCCHhHCCCCEEEeccccccccccceeeeccCCEEEEEEeCcCCCCcccee
Confidence 457899999999999999999999999875 9999999999999999999999 9999999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHhhcccccCcCcccCCccccceeeEEeccCCCCCCCEEEeCCeEEE
Q 022017 232 QDTGDAGPEPNETLKQIRSDKVLRPGRKQRGKIYFGQNMVCKDNLTEGNGKVLKLGDPVFV 292 (304)
Q Consensus 232 p~tg~~~~~pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~G~~I~vGD~v~v 292 (304)
|+||.++.+....+..+. ....+|+|+.+. ..| .|+|||+|+|
T Consensus 91 ~~tg~~~~~~~~~~~~~~------------~~~~~G~~~~V~-----~~G-~I~vGD~V~V 133 (133)
T PF03473_consen 91 PDTGERDPEGKPLFGQNA------------SPGRRGVYARVI-----KGG-TIRVGDEVEV 133 (133)
T ss_dssp HCHCTCTSTTHHHHHHHH------------CCTSS-EEEEEE-----E-E-EEETTSEEEE
T ss_pred eccCcccchhhhhhhhhe------------ecCCceEEEEec-----cCC-EEccCCeEEC
Confidence 999999888544444443 334789999998 676 9999999986
No 6
>KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism]
Probab=99.33 E-value=6.6e-13 Score=130.38 Aligned_cols=198 Identities=23% Similarity=0.327 Sum_probs=125.8
Q ss_pred EEeeeeeeecCCCCceeeceeeecccccccCceeEEEecCCCeEecCCCCceEEEEEecCCcccccCccCCCCceEEEEe
Q 022017 6 KVTSIFVYPIKSCRGISVSQAPLTPTGFRWDRQWMVINNKGRAYTQRNEPKLALVQIELPNEAFLEGWEPTGSSYMVIRA 85 (304)
Q Consensus 6 ~V~~L~~yPVKS~~g~~v~~~~l~~~Gl~~DR~~ai~d~~g~~~t~r~~p~l~~i~~~~~~~~~~~~~~~~~~~~l~l~~ 85 (304)
.+.+++.|||| |+.++++++.....||.|||.||++|-+|.++++++++++++|.+.+..-. + +....++..
T Consensus 465 ~d~~~~s~~~~-~~~~EI~~~~~~~~gl~~~~s~m~~~~~~~alr~etE~e~~Li~~~~~~~~--d-----~~~~~~vs~ 536 (728)
T KOG2142|consen 465 FDAAVASYPIK-CAAFEIEEENSGSQGLKYDRSWMSVDMNGSALRQETESELCLIGPRIKVQE--D-----EQSERRVSF 536 (728)
T ss_pred hhhhhhhhhhh-hceeEeeccCccccccccccccccccccccceeeecccceeeeccccchhh--h-----cccceeecc
Confidence 35678899999 999999999999999999999999999999999999999999999984210 0 001122222
Q ss_pred CCCCeeEEeCCCCCCCccceEEec-ccccccccchHHHHHHHHHhCCce------EEEEecCCCC--CCCCCccccCCce
Q 022017 86 PGMQALKIPMSKPCDIADGVSVWE-WSGSALDEGAEASNWFTNYLGKSS------RLVRYNAESE--TRPVDPEYAAGQI 156 (304)
Q Consensus 86 ~~~~~l~v~l~~~~~~~~~~~~~~-~~~~~~d~g~~~~~wls~~lg~~~------rLv~~~~~~~--~r~~~~~~~~~~~ 156 (304)
| -.|+. .....+.++. ..++++|+++....|+++-.|+.. .| +..+... .+.......-+..
T Consensus 537 ~------~sl~~--~~a~~~s~~d~~~c~~iDh~~~lgln~t~~r~r~ll~wl~~sl-~~~~~~~~~~~~~nlvq~ygpk 607 (728)
T KOG2142|consen 537 P------TSLEQ--GEASKCSSYDCPPCRGIDHVDSLGLNLTTNRGRELLNWLVQSL-RNLQHSESSSTTVNLVQIYGPK 607 (728)
T ss_pred h------hhhhh--hhhhhcccccCccccccchhhhhhHHhhhhhhhhHHHHHHHhc-ccccccccccccccceeeecCc
Confidence 2 01111 1111112211 346789999988899988777652 22 1111000 0000000000001
Q ss_pred eecCCCCceeeeeHhHHHHHHHHhCCCCCCCcceeeEEEeCCCCCCCCCcceEEECceEEEEeecCCCcccceeeCCCCC
Q 022017 157 TMFSDGYPFMLLSQGSLDALNKLLKEPVPINRFRPNILVDGCEPFSEDTWTEVRINKFTFQGVKLCSRCKIPTINQDTGD 236 (304)
Q Consensus 157 ~~f~D~~p~~lis~aSl~~l~~~l~~~v~~~RFRpNIvi~g~~pf~Ed~W~~l~IG~~~~~~~~~c~RC~~~~vdp~tg~ 236 (304)
+.+..+..+. -+|.+ -..|||.||||++...|+|-+|+.+-||...|.+ ||.| ++||.+|+
T Consensus 608 ~~~erG~~~~----fnl~d---------~~~~fr~p~IV~~lae~E~isl~~~~l~~iri~d--p~~r----~~dq~~~~ 668 (728)
T KOG2142|consen 608 TKYERGPAVA----FNLFD---------LSKRFRAPIIVNKLAEREEISLGELSLGHIRIQD--PCHR----DIDQLLGQ 668 (728)
T ss_pred cccccChhhe----eehhh---------hhccccchhhhcchhhhhcccccceeeeeeEEec--Ccch----hhhHHhhh
Confidence 1111111110 01111 2579999999999999999999999999998877 8999 67898888
Q ss_pred CCC
Q 022017 237 AGP 239 (304)
Q Consensus 237 ~~~ 239 (304)
+..
T Consensus 669 r~~ 671 (728)
T KOG2142|consen 669 RRG 671 (728)
T ss_pred hcc
Confidence 743
No 7
>PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional
Probab=98.65 E-value=1.1e-07 Score=88.41 Aligned_cols=103 Identities=15% Similarity=0.105 Sum_probs=74.9
Q ss_pred CceeeeeHhHHHHHHHHhCCC-CCCCcceeeEEEeCCCCCCCCCcceEEECc-eEEEEeecCCCcccceeeCCCCCCCCC
Q 022017 163 YPFMLLSQGSLDALNKLLKEP-VPINRFRPNILVDGCEPFSEDTWTEVRINK-FTFQGVKLCSRCKIPTINQDTGDAGPE 240 (304)
Q Consensus 163 ~p~~lis~aSl~~l~~~l~~~-v~~~RFRpNIvi~g~~pf~Ed~W~~l~IG~-~~~~~~~~c~RC~~~~vdp~tg~~~~~ 240 (304)
..+++++.++++.++ .++.. +++..||.||+++|.....-.-=+.|+||+ +.|+++.+|..|.-.........
T Consensus 203 RqVsl~~~E~~~~~~-~~g~~~l~pG~fGENLtv~Gidl~~l~iGdrlrIG~~avLeVt~pr~PC~~~~~~l~~~~---- 277 (308)
T PRK14499 203 RQVSLLDISSIKKME-EYGLKGLCFGKFAENITTENLDLQKISLGTKLKIGDNVVLEISQIGKKCHGSGCEIARQV---- 277 (308)
T ss_pred ceEEEcCHHHHHHHH-hcCCcCCCcccccceEEEcCcCHHHCCCCCEEEECCcEEEEEEeCCCCCcCcccchhHhc----
Confidence 469999999999987 45655 899999999999997331111118999999 99999999999974321111111
Q ss_pred hhHHHHHhhcccccCcCcccCCccccceeeEEeccCCCCCCCEEEeCCeEEEeE
Q 022017 241 PNETLKQIRSDKVLRPGRKQRGKIYFGQNMVCKDNLTEGNGKVLKLGDPVFVLK 294 (304)
Q Consensus 241 pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~G~~I~vGD~v~v~~ 294 (304)
+. ..-+.-|+|+.|+ ++| .|++||.|.+++
T Consensus 278 --------~~----------~~~~r~G~y~RVl-----~~G-~Ir~GD~V~l~~ 307 (308)
T PRK14499 278 --------GV----------CIMPKEGLFAKVL-----KGG-KIKPGDIIEILN 307 (308)
T ss_pred --------Cc----------cCcccceEEEEEe-----cCe-EEcCCCEEEEcc
Confidence 00 0111259999999 677 999999999875
No 8
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=98.10 E-value=2.8e-05 Score=69.28 Aligned_cols=107 Identities=14% Similarity=0.096 Sum_probs=83.1
Q ss_pred CceeeeeHhHHHHHHHHhCC---CCCCCcceeeEEEeCCCCCCCCCc---ceEEECceEEEEeecCCCcccceeeCCCCC
Q 022017 163 YPFMLLSQGSLDALNKLLKE---PVPINRFRPNILVDGCEPFSEDTW---TEVRINKFTFQGVKLCSRCKIPTINQDTGD 236 (304)
Q Consensus 163 ~p~~lis~aSl~~l~~~l~~---~v~~~RFRpNIvi~g~~pf~Ed~W---~~l~IG~~~~~~~~~c~RC~~~~vdp~tg~ 236 (304)
..+++.+.++.+..++.++. .+.+--|==||.++| +.|++- +.++||++.|+|+.|+..|--. +...+.
T Consensus 55 kAV~~y~~e~y~~w~~~~~~~~~~l~~G~fGENLtv~G---l~e~~v~IGD~~riG~avleVsqpR~PC~kl--~~r~~~ 129 (223)
T PRK11536 55 RALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDG---LTESNVFIGDIFRWGEALIQVTQPRSPCYKL--NYHFDI 129 (223)
T ss_pred ceEEEcCHhHHHHHHHHccccccccCCCCccCCEEecC---cChhhCCccCEEEECCEEEEEecCCCCCCch--hhhccc
Confidence 45899999999999988864 466678999999997 567766 8899999999999999999544 333332
Q ss_pred CCCChhHHHHHhhcccccCcCcccCCccccceeeEEeccCCCCCCCEEEeCCeEEEeEecC
Q 022017 237 AGPEPNETLKQIRSDKVLRPGRKQRGKIYFGQNMVCKDNLTEGNGKVLKLGDPVFVLKKVT 297 (304)
Q Consensus 237 ~~~~pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~G~~I~vGD~v~v~~~~~ 297 (304)
++..+.+.+. ..-|+|+.|+ ++| .|++||+|.++++.+
T Consensus 130 --~~~~~~~~~~---------------g~~G~Y~RVL-----~~G-~V~~GD~v~l~~r~~ 167 (223)
T PRK11536 130 --SDIAQLMQNS---------------GKCGWLYRVI-----APG-KVSADAPLELVSRVS 167 (223)
T ss_pred --hhHHHHHHhh---------------CCcEEEEEEE-----CCc-EEcCCCEEEEEeCCC
Confidence 3334444332 2459999999 788 999999999999974
No 9
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.05 E-value=2.3e-05 Score=68.78 Aligned_cols=107 Identities=16% Similarity=0.216 Sum_probs=85.3
Q ss_pred ceeeeeHhHHHHHHHHhCCCCCCCcceeeEEEeCCCCCCCCCc---ceEEECceEEEEeecCCCcccceeeCCCCCCCCC
Q 022017 164 PFMLLSQGSLDALNKLLKEPVPINRFRPNILVDGCEPFSEDTW---TEVRINKFTFQGVKLCSRCKIPTINQDTGDAGPE 240 (304)
Q Consensus 164 p~~lis~aSl~~l~~~l~~~v~~~RFRpNIvi~g~~pf~Ed~W---~~l~IG~~~~~~~~~c~RC~~~~vdp~tg~~~~~ 240 (304)
.+.+.+...++.....++..+.+-=|+=||.++|. .|... +.++||++.|+|+.++.-|.-.+.-.+. ++
T Consensus 56 Av~~y~~ehy~~w~~~lg~~l~pg~fGENltt~Gl---~e~~l~iGdr~riG~allEVSqpR~PC~~l~~~~~~----~~ 128 (210)
T COG2258 56 AVCHYPREHYAAWETLLGRGLQPGAFGENLTTSGL---DEANLCIGDRFRIGEALLEVTQPRKPCSKLNKRFGI----PD 128 (210)
T ss_pred eEEEccHHHHHHHHHHhCCCCCcccccCceeecCc---chhhccccCEEEeccEEEEecCCCCchHHHHHhcCC----cc
Confidence 57889999999999999999999999999999985 55555 7899999999999999999877553221 22
Q ss_pred hhHHHHHhhcccccCcCcccCCccccceeeEEeccCCCCCCCEEEeCCeEEEeEecCc
Q 022017 241 PNETLKQIRSDKVLRPGRKQRGKIYFGQNMVCKDNLTEGNGKVLKLGDPVFVLKKVTS 298 (304)
Q Consensus 241 pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~G~~I~vGD~v~v~~~~~~ 298 (304)
..+.+.+ ...-|.|+.|+ ..| .|++||++.++++.+.
T Consensus 129 ~~~~~~~---------------~G~~G~y~RVL-----~~G-~v~~gD~l~l~~r~~~ 165 (210)
T COG2258 129 LAKRFQQ---------------TGRTGWYARVL-----EEG-KVRAGDPLKLIPRPSP 165 (210)
T ss_pred HHHHhhc---------------cCcccEEEEEc-----ccc-eecCCCceEEecCCCC
Confidence 2222221 22469999999 677 9999999999998763
No 10
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=46.30 E-value=11 Score=31.87 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=19.3
Q ss_pred CCcceeeEEEeCCCC-----CC-----CCCcceEEECc
Q 022017 186 INRFRPNILVDGCEP-----FS-----EDTWTEVRINK 213 (304)
Q Consensus 186 ~~RFRpNIvi~g~~p-----f~-----Ed~W~~l~IG~ 213 (304)
++|-||||+|.|.|. +. .-..+.|-||+
T Consensus 3 ~~r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd 40 (176)
T KOG3347|consen 3 PERERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISD 40 (176)
T ss_pred hhhcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhh
Confidence 569999999998643 22 22346777876
No 11
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=45.70 E-value=65 Score=27.78 Aligned_cols=51 Identities=25% Similarity=0.421 Sum_probs=36.0
Q ss_pred ceEEeeeeeeecCC---CCceeeceeeecccc-c----ccCceeEEEecCCCeEecCCC
Q 022017 4 AGKVTSIFVYPIKS---CRGISVSQAPLTPTG-F----RWDRQWMVINNKGRAYTQRNE 54 (304)
Q Consensus 4 ~~~V~~L~~yPVKS---~~g~~v~~~~l~~~G-l----~~DR~~ai~d~~g~~~t~r~~ 54 (304)
-|+=.+|++||-.+ -=.-+++.|++...| | -+||..++++.+|-.++....
T Consensus 15 gG~T~Ei~~~P~~~~~~~F~wRiS~A~V~~~g~FS~FpG~~R~l~~L~G~gl~L~~~~~ 73 (184)
T PF05962_consen 15 GGTTREIAIYPEGSAKRDFDWRISIATVEADGPFSDFPGYDRILTLLEGNGLRLTHDGQ 73 (184)
T ss_dssp SEEEEEEEE-SSSCCCCC-SEEEEEEEE-SSEEE---TT-EEEEEEEESS-EEEEETTC
T ss_pred CeEEEEEEEcCCCCccCCceEEEEEEEEcCCCCCCCCCCCcEEEEEEeCCcEEEecCCC
Confidence 46778999999876 223578889998888 3 269999999998887776655
No 12
>PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional
Probab=26.45 E-value=76 Score=29.84 Aligned_cols=36 Identities=28% Similarity=0.238 Sum_probs=31.7
Q ss_pred CceEEeeeeeeecCCCCceeeceeee-cccccccCce
Q 022017 3 AAGKVTSIFVYPIKSCRGISVSQAPL-TPTGFRWDRQ 38 (304)
Q Consensus 3 ~~~~V~~L~~yPVKS~~g~~v~~~~l-~~~Gl~~DR~ 38 (304)
++++|.+|++.|-++..=..+++..+ ...|+.+|+.
T Consensus 161 ~~~~VlsI~is~~~gi~K~~v~~~~~v~~~GieGD~H 197 (308)
T PRK14499 161 KTAKVVSINISRQKGTPKEPVEEAVLIENHGIEGDAH 197 (308)
T ss_pred CCCEEEEEEeCCCCCccceecCceEEEccCCCCCCcC
Confidence 57899999999999999999998755 5789999984
No 13
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=23.65 E-value=55 Score=23.94 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=15.6
Q ss_pred EEEeCCeEEEeEecCchhh
Q 022017 283 VLKLGDPVFVLKKVTSAAE 301 (304)
Q Consensus 283 ~I~vGD~v~v~~~~~~~~~ 301 (304)
..+.||.|.|+.|++-.+.
T Consensus 5 ~~~~GD~VyViYrNPHt~~ 23 (75)
T PF11132_consen 5 PYHAGDIVYVIYRNPHTQD 23 (75)
T ss_pred ccCCCCEEEEEEcCCCCcc
Confidence 5789999999999976543
No 14
>PRK00359 rpmB 50S ribosomal protein L28; Reviewed
Probab=20.95 E-value=86 Score=23.08 Aligned_cols=12 Identities=33% Similarity=0.473 Sum_probs=9.6
Q ss_pred CCCCcceeeEEE
Q 022017 184 VPINRFRPNILV 195 (304)
Q Consensus 184 v~~~RFRpNIvi 195 (304)
-.-++|+|||-=
T Consensus 24 kTkR~~~pNlq~ 35 (76)
T PRK00359 24 KTKRRFLPNLQK 35 (76)
T ss_pred ccCceecccceE
Confidence 367899999973
No 15
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=20.21 E-value=59 Score=22.40 Aligned_cols=13 Identities=38% Similarity=0.498 Sum_probs=10.0
Q ss_pred EeecCCCccccee
Q 022017 218 GVKLCSRCKIPTI 230 (304)
Q Consensus 218 ~~~~c~RC~~~~v 230 (304)
+-..|+||..+|-
T Consensus 23 le~KCPrCK~vN~ 35 (60)
T COG4416 23 LEKKCPRCKEVNE 35 (60)
T ss_pred eeecCCccceeee
Confidence 4568999998754
Done!