Query 022017
Match_columns 304
No_of_seqs 138 out of 1137
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 12:45:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2exn_A Hypothetical protein BO 100.0 3.6E-33 1.2E-37 229.6 10.2 124 7-149 1-127 (136)
2 1oru_A YUAD protein; structura 99.8 4.3E-20 1.5E-24 160.4 15.4 117 162-298 66-187 (195)
3 1o65_A Hypothetical protein YI 99.3 6.6E-12 2.3E-16 112.2 10.4 106 163-295 67-177 (246)
4 3esg_A HUTD, putative uncharac 26.7 1.7E+02 0.0057 24.4 6.8 50 4-53 28-84 (193)
5 1v1c_A Obscurin; muscle, sarco 19.2 58 0.002 22.7 2.0 35 264-298 3-40 (71)
6 3v2d_1 50S ribosomal protein L 18.6 43 0.0015 24.9 1.3 11 185-195 38-48 (98)
7 2cr8_A MDM4 protein; ZF-ranbp 15.8 17 0.0006 23.7 -1.2 31 201-231 7-37 (53)
8 1n0x_P B2.1 peptide, immunoglo 15.2 87 0.003 16.8 1.6 18 35-52 1-18 (26)
9 3lyd_A Uncharacterized protein 14.4 53 0.0018 26.7 1.0 12 185-196 45-56 (161)
10 1qd7_I S17 ribosomal protein; 14.0 89 0.0031 22.7 2.0 15 283-297 49-63 (89)
No 1
>2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1
Probab=100.00 E-value=3.6e-33 Score=229.64 Aligned_cols=124 Identities=28% Similarity=0.504 Sum_probs=110.5
Q ss_pred EeeeeeeecCCCCceeeceeeecccccccCceeEEEecCCCeEecCCCCceEEEEEecCCcccccCccCCCCceEEEEeC
Q 022017 7 VTSIFVYPIKSCRGISVSQAPLTPTGFRWDRQWMVINNKGRAYTQRNEPKLALVQIELPNEAFLEGWEPTGSSYMVIRAP 86 (304)
Q Consensus 7 V~~L~~yPVKS~~g~~v~~~~l~~~Gl~~DR~~ai~d~~g~~~t~r~~p~l~~i~~~~~~~~~~~~~~~~~~~~l~l~~~ 86 (304)
|++|||||||||+|++|+++. .|||+|||+|++|+|+|||++|+|++|++.++. +.|+|++|
T Consensus 1 v~~L~iYPIKSc~g~~l~~a~------~~DR~wmlvd~~G~~lt~r~~P~Lali~~~~~~------------~~L~l~~p 62 (136)
T 2exn_A 1 MSTTAYQPIAECGATTQSEAA------AYQKRWLVANDAGQWLNRDLCPRLAEVSVELRM------------GYLVLKAP 62 (136)
T ss_dssp CCCCCEEEETTTEEECCGGGG------GTCCSEEEEETTSCEECTTTCGGGGCCEEEECS------------SEEEEECS
T ss_pred CceEEEeccccCCceecCccC------ccCCcEEEEeCCCCEEEccCCccccEEEEEecC------------CEEEEEeC
Confidence 579999999999999999987 999999999999999999999999999999853 47999999
Q ss_pred CCCeeEEeCCCCC---CCccceEEecccccccccchHHHHHHHHHhCCceEEEEecCCCCCCCCCc
Q 022017 87 GMQALKIPMSKPC---DIADGVSVWEWSGSALDEGAEASNWFTNYLGKSSRLVRYNAESETRPVDP 149 (304)
Q Consensus 87 ~~~~l~v~l~~~~---~~~~~~~~~~~~~~~~d~g~~~~~wls~~lg~~~rLv~~~~~~~~r~~~~ 149 (304)
|++++.|++.... .....+++|++.++++|||+++++|||++||+|++|+++++... |..++
T Consensus 63 g~~~l~vpl~~~~~~~~~~~~v~vw~~~~~a~d~g~~~~~W~S~~Lg~p~rLv~~~~~~~-R~~~~ 127 (136)
T 2exn_A 63 GMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNHAGVPCRILKVHPDMA-EVRWP 127 (136)
T ss_dssp SSCEEEEESSCCCSSCSCEEEEEETTEEEEEEECCHHHHHHHHHHTCSSEEEEEECTTTC-CCCCC
T ss_pred CCceEEEECCCccccccCceeEEEeCCcceeEeccHHHHHHHHHHhCCCeEEEEcCCCCc-cccCc
Confidence 9999999997653 13457899999999999999999999999999999999987654 44444
No 2
>1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} SCOP: b.58.1.2
Probab=99.84 E-value=4.3e-20 Score=160.44 Aligned_cols=117 Identities=13% Similarity=0.093 Sum_probs=93.7
Q ss_pred CCceeeeeHhHHHHHHHHhCCC-CCCCcceeeEEEeCC-CCCCCCCcceEEECc-eEEEEeecCCCcccc--eeeCCCCC
Q 022017 162 GYPFMLLSQGSLDALNKLLKEP-VPINRFRPNILVDGC-EPFSEDTWTEVRINK-FTFQGVKLCSRCKIP--TINQDTGD 236 (304)
Q Consensus 162 ~~p~~lis~aSl~~l~~~l~~~-v~~~RFRpNIvi~g~-~pf~Ed~W~~l~IG~-~~~~~~~~c~RC~~~--~vdp~tg~ 236 (304)
..+++|++.+|++.+++.++.+ +++.+||+||+++|. ..++++-++.|+||+ +.|+++.+|.||..+ ++++.++
T Consensus 66 ~r~V~l~~~e~~~~~~~~~g~~~l~~g~fgeNl~v~Gi~~~~~l~iG~~l~iG~~a~leVt~~~~pC~~~~~~i~~~~~- 144 (195)
T 1oru_A 66 RRQISIVSIEECNEIALKMGVPRILPEWLGANVAVSGMPDLTSLKEGSRIIFPSGAALLCEGENDPCIQPGEVIQSYYP- 144 (195)
T ss_dssp CCCEEEEEHHHHHHHHHHHTCSCCCGGGGTCSEEEESCTTGGGCCTTCEEECTTSCEEEEEEECCCCHHHHHHHHHHST-
T ss_pred CceEEECCHHHHHHHHHHcCCCCCCcccccCCEEEeCCCChhhCCCCCEEEECCCEEEEEeeccCCCCCCccccchhcc-
Confidence 4579999999999999999876 999999999999998 556666679999997 999999999999984 4565442
Q ss_pred CCCChhHHHHHhhcccccCcCcccCCccccceeeEEeccCCCCCCCEEEeCCeEEEeEecCc
Q 022017 237 AGPEPNETLKQIRSDKVLRPGRKQRGKIYFGQNMVCKDNLTEGNGKVLKLGDPVFVLKKVTS 298 (304)
Q Consensus 237 ~~~~pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~G~~I~vGD~v~v~~~~~~ 298 (304)
..++..+.+.+.. ...||+|+.|+ +.| .|++||+|.++.+...
T Consensus 145 ~~~g~~~~~~~~~-------------~~r~G~~~rVl-----~~G-~I~~GD~v~l~~~~~~ 187 (195)
T 1oru_A 145 DQPKLASAFVRHA-------------LGIRGIVCIVE-----RPG-AVYTGDEIEVHSYQRK 187 (195)
T ss_dssp TSTTHHHHHHHHS-------------TTSSCEEEEEE-----ECE-EEETTCEEEEEEEC--
T ss_pred cccchHHHHHhhc-------------cCCccEEEEEe-----cCc-eEcCCCEEEEEeCCCC
Confidence 1234556665531 23699999999 677 9999999999987653
No 3
>1o65_A Hypothetical protein YIIM; structural genomics, unknown function; 2.33A {Escherichia coli} SCOP: b.58.1.2 PDB: 1o67_A
Probab=99.31 E-value=6.6e-12 Score=112.15 Aligned_cols=106 Identities=11% Similarity=0.082 Sum_probs=88.3
Q ss_pred CceeeeeHhHHHHHHHHhCC---CCCCCcceeeEEEeCCCCCCCCCc--ceEEECceEEEEeecCCCcccceeeCCCCCC
Q 022017 163 YPFMLLSQGSLDALNKLLKE---PVPINRFRPNILVDGCEPFSEDTW--TEVRINKFTFQGVKLCSRCKIPTINQDTGDA 237 (304)
Q Consensus 163 ~p~~lis~aSl~~l~~~l~~---~v~~~RFRpNIvi~g~~pf~Ed~W--~~l~IG~~~~~~~~~c~RC~~~~vdp~tg~~ 237 (304)
..+++++.+|++.+++.++. .+++.+||-||+++|.. .++-| +.++||++.|+++.+|.+|..++.. +|.
T Consensus 67 rqV~l~~~E~~~~~~~~~g~~~~~l~pg~fgENLtv~Gl~--~~~l~iG~rlrIG~avLeVTq~r~PC~~~~~~--~g~- 141 (246)
T 1o65_A 67 RALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDGLT--ESNVYMGDIFRWGEALIQVSQPRSPCYKLNYH--FDI- 141 (246)
T ss_dssp GSEEEEETHHHHHHHHHCGGGGGGCSTTTTCCSEEESSCC--TTTCBTTCEEEETTEEEEEEEECCCCTHHHHH--TTC-
T ss_pred CeEEECCHHHHHHHHHHhCCCcccCCcccccCCEEECCcc--hhhCCCCCEEEECCEEEEEEeCcCccHhHHHH--hcC-
Confidence 46999999999999998876 48999999999999964 44447 8899999999999999999988775 333
Q ss_pred CCChhHHHHHhhcccccCcCcccCCccccceeeEEeccCCCCCCCEEEeCCeEEEeEe
Q 022017 238 GPEPNETLKQIRSDKVLRPGRKQRGKIYFGQNMVCKDNLTEGNGKVLKLGDPVFVLKK 295 (304)
Q Consensus 238 ~~~pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~G~~I~vGD~v~v~~~ 295 (304)
.+..+.+.+. ..+|+|+.|+ +.| .|++||+|.++++
T Consensus 142 -~~~~~~~~~~---------------~r~G~y~rVl-----~~G-~V~~GD~v~l~~r 177 (246)
T 1o65_A 142 -SDIAQLMQNT---------------GKVGWLYSVI-----APG-KVSADAPLELVSR 177 (246)
T ss_dssp -TTHHHHHHHH---------------TCCCEEEEEE-----ECE-EEETTSCEEEEEC
T ss_pred -cCHHHHHhhC---------------CCcEEEEEEe-----eCc-EEcCCCEEEEecC
Confidence 3555666543 2589999999 676 9999999999988
No 4
>3esg_A HUTD, putative uncharacterized protein; beta barrel, unknown function; 1.80A {Pseudomonas fluorescens} SCOP: b.82.1.0
Probab=26.70 E-value=1.7e+02 Score=24.39 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=38.8
Q ss_pred ceEEeeeeeeecCCCC--ceeeceeeecccc-c----ccCceeEEEecCCCeEecCC
Q 022017 4 AGKVTSIFVYPIKSCR--GISVSQAPLTPTG-F----RWDRQWMVINNKGRAYTQRN 53 (304)
Q Consensus 4 ~~~V~~L~~yPVKS~~--g~~v~~~~l~~~G-l----~~DR~~ai~d~~g~~~t~r~ 53 (304)
-|+=.+|++||-.+.+ .-+++.|++...| | -+||..++++.+|-.++...
T Consensus 28 gG~TrEI~~~P~~~~~~F~wRiSiA~V~~~g~FS~FpG~dR~l~lL~G~gl~L~~~g 84 (193)
T 3esg_A 28 GGSTEEITRDAGTGLEGFGWRLSIADIGESGGFSSFAGYQRVITVIQGAGMVLTVDG 84 (193)
T ss_dssp SEEEEEEEECCCBTTTBCSEEEEEEEECSSEECCCCTTCEEEEEEEESSCEEEEETT
T ss_pred CeEEEEEEEcCCCcCCCceEEEEEEEEcCCCCCCCCCCceEEEEEEcCCcEEEEeCC
Confidence 4667899999986544 3678889998888 4 36999999998887776543
No 5
>1v1c_A Obscurin; muscle, sarcomere, adapter, myogenesis, SH3-domain; NMR {Homo sapiens}
Probab=19.24 E-value=58 Score=22.74 Aligned_cols=35 Identities=29% Similarity=0.306 Sum_probs=20.7
Q ss_pred cccceeeEEeccC---CCCCCCEEEeCCeEEEeEecCc
Q 022017 264 IYFGQNMVCKDNL---TEGNGKVLKLGDPVFVLKKVTS 298 (304)
Q Consensus 264 ~~fG~~~~~~~~~---~~~~G~~I~vGD~v~v~~~~~~ 298 (304)
..|=+|..+.+-. ....-..++.||.|+|++..+.
T Consensus 3 ~~~~~Y~v~aDy~p~~~~~~ei~lk~Gd~VeVl~k~~~ 40 (71)
T 1v1c_A 3 SIFDIYVVTADYLPLGAEQDAITLREGQYVEVLDAAHP 40 (71)
T ss_dssp -CCCEEEESSCBCCCSCCTTBCCBCTTCEEEEEEEEET
T ss_pred EEeeEEEEEecccccCCCcceeeecCCCEEEEEEcCCC
Confidence 3466776554321 1111235999999999997653
No 6
>3v2d_1 50S ribosomal protein L28; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_1 2v47_1 2v49_1 2wdi_1 2wdj_1 2wdl_1 2wdn_1 2wh2_1 2wh4_1 2wrj_1 2wrl_1 2wro_1 2wrr_1 2x9s_1 2x9u_1 2xqe_1 2xtg_1 2xux_1 2y0v_1 2y0x_1 ...
Probab=18.61 E-value=43 Score=24.89 Aligned_cols=11 Identities=27% Similarity=0.299 Sum_probs=8.9
Q ss_pred CCCcceeeEEE
Q 022017 185 PINRFRPNILV 195 (304)
Q Consensus 185 ~~~RFRpNIvi 195 (304)
.-++|+|||-=
T Consensus 38 TkR~f~PNLqk 48 (98)
T 3v2d_1 38 SKRRQYPNLQK 48 (98)
T ss_dssp EEEEECCCEEE
T ss_pred ccceeccceEE
Confidence 46899999973
No 7
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=15.84 E-value=17 Score=23.68 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=20.7
Q ss_pred CCCCCcceEEECceEEEEeecCCCcccceee
Q 022017 201 FSEDTWTEVRINKFTFQGVKLCSRCKIPTIN 231 (304)
Q Consensus 201 f~Ed~W~~l~IG~~~~~~~~~c~RC~~~~vd 231 (304)
=.||.|+-.+-+...-=..+.|.||-..-=|
T Consensus 7 ~~eD~WkC~~C~k~N~Pl~ryC~rCwaLRk~ 37 (53)
T 2cr8_A 7 GSEDEWQCTECKKFNSPSKRYCFRCWALRKD 37 (53)
T ss_dssp CCSCCEECSSSCCEECSSCCBCTTTCCBCCC
T ss_pred CCcceeecccccccCCCccchhHHHHHhhcc
Confidence 4688897666654444457789999776433
No 8
>1n0x_P B2.1 peptide, immunoglobulin heavy chain; antibody-peptide complex, peptide dimer, immune system; HET: CXS; 1.80A {Homo sapiens}
Probab=15.20 E-value=87 Score=16.79 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=13.9
Q ss_pred cCceeEEEecCCCeEecC
Q 022017 35 WDRQWMVINNKGRAYTQR 52 (304)
Q Consensus 35 ~DR~~ai~d~~g~~~t~r 52 (304)
+.|.||+.|..++++.+.
T Consensus 1 hersymfsdlenrciaae 18 (26)
T 1n0x_P 1 HERSYMFSDLENRCIAAE 18 (26)
T ss_dssp CCCCEEEETTTTEEEECS
T ss_pred CcchhhhhHHHHHHHHHH
Confidence 368899999888887553
No 9
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=14.38 E-value=53 Score=26.68 Aligned_cols=12 Identities=42% Similarity=0.733 Sum_probs=10.0
Q ss_pred CCCcceeeEEEe
Q 022017 185 PINRFRPNILVD 196 (304)
Q Consensus 185 ~~~RFRpNIvi~ 196 (304)
-..-||||+||.
T Consensus 45 ~~~~F~pN~vVt 56 (161)
T 3lyd_A 45 PPQGFTPNIIGT 56 (161)
T ss_dssp CCSSSCCEEEEE
T ss_pred CCCCccccEEEE
Confidence 356799999997
No 10
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=14.02 E-value=89 Score=22.71 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=12.9
Q ss_pred EEEeCCeEEEeEecC
Q 022017 283 VLKLGDPVFVLKKVT 297 (304)
Q Consensus 283 ~I~vGD~v~v~~~~~ 297 (304)
..++||.|.+.+..|
T Consensus 49 ~~k~GD~V~I~E~RP 63 (89)
T 1qd7_I 49 EAKVGDIVKIMETRP 63 (89)
T ss_pred CCCCCCEEEEEEccc
Confidence 799999999988654
Done!