Your job contains 1 sequence.
>022018
MVSDSELIARLQEFLKNSDLNTTTTGIVRRQLEKDFGVDLTDKKIFIREQVDLFLQSQFE
NDQNDGGNEEQQEEDDGEDDQMAKVKSDETDGSDDAAVEEGDDDNNDENDNDDEANEAKG
PAKRRSRKLNNEVKKRGGGFSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDP
NNRRNIVCDERLRALFGVDTINMFQMNKALSKHIWPLDSDDVISVKSTPKEKQRKQERTE
DLDEPTRKEKRQKGGKSGFLAPLQLSDALIKFLGTGESALPRSDVIKRMWDYIKEKNLQV
SLRK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022018
(304 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2085894 - symbol:AT3G19080 species:3702 "Arabi... 526 4.2e-69 2
TAIR|locus:2010197 - symbol:AT1G49520 "AT1G49520" species... 373 1.4e-52 2
TAIR|locus:2132055 - symbol:AT4G22360 "AT4G22360" species... 348 3.2e-41 2
POMBASE|SPCC285.17 - symbol:spp27 "RNA polymerase I upstr... 241 6.9e-23 2
ASPGD|ASPL0000053508 - symbol:AN0360 species:162425 "Emer... 202 2.3e-22 2
UNIPROTKB|G4MMD0 - symbol:MGG_01988 "Uncharacterized prot... 226 1.6e-21 2
SGD|S000004846 - symbol:TRI1 "Non-essential sumoylated pr... 226 8.3e-19 1
SGD|S000005821 - symbol:UAF30 "Subunit of UAF (upstream a... 196 1.3e-15 1
TAIR|locus:2060469 - symbol:AT2G14880 "AT2G14880" species... 188 8.8e-15 1
TAIR|locus:505006294 - symbol:AT2G35605 "AT2G35605" speci... 185 1.8e-14 1
TAIR|locus:2096404 - symbol:AT3G03590 "AT3G03590" species... 184 2.3e-14 1
TAIR|locus:2116189 - symbol:AT4G34290 "AT4G34290" species... 180 6.2e-14 1
FB|FBgn0035370 - symbol:CG1240 species:7227 "Drosophila m... 161 6.9e-14 2
WB|WBGene00020779 - symbol:T24G10.2 species:6239 "Caenorh... 167 1.6e-10 1
TAIR|locus:2028671 - symbol:AT1G31760 "AT1G31760" species... 149 2.0e-10 1
TAIR|locus:2116302 - symbol:AT4G26810 "AT4G26810" species... 134 1.0e-08 1
ASPGD|ASPL0000017588 - symbol:AN10524 species:162425 "Eme... 140 6.1e-07 1
WB|WBGene00015971 - symbol:swsn-2.2 species:6239 "Caenorh... 133 3.6e-06 1
UNIPROTKB|Q2TBN1 - symbol:SMARCD1 "SWI/SNF-related matrix... 126 2.9e-05 1
POMBASE|SPAC23G3.10c - symbol:ssr3 "SWI/SNF and RSC compl... 121 8.0e-05 1
TAIR|locus:2827287 - symbol:NERD "Needed for RDR2-indepen... 126 0.00014 1
UNIPROTKB|H9KZE0 - symbol:SMARCD1 "Uncharacterized protei... 120 0.00014 1
UNIPROTKB|F1NJN5 - symbol:SMARCD3 "Uncharacterized protei... 119 0.00015 1
UNIPROTKB|F1MTG9 - symbol:SMARCD1 "SWI/SNF-related matrix... 119 0.00018 1
UNIPROTKB|Q96GM5 - symbol:SMARCD1 "SWI/SNF-related matrix... 119 0.00018 1
RGD|1305406 - symbol:Smarcd1 "SWI/SNF related, matrix ass... 119 0.00018 1
UNIPROTKB|E1BJD1 - symbol:SMARCD2 "SWI/SNF-related matrix... 119 0.00019 1
UNIPROTKB|Q92925 - symbol:SMARCD2 "SWI/SNF-related matrix... 119 0.00019 1
UNIPROTKB|F1RSJ9 - symbol:SMARCD2 "Uncharacterized protei... 119 0.00019 1
MGI|MGI:1933621 - symbol:Smarcd2 "SWI/SNF related, matrix... 119 0.00019 1
RGD|69289 - symbol:Smarcd2 "SWI/SNF related, matrix assoc... 119 0.00019 1
TAIR|locus:2154473 - symbol:AT5G23480 species:3702 "Arabi... 119 0.00021 1
TAIR|locus:2078713 - symbol:AT3G01890 "AT3G01890" species... 115 0.00023 2
TAIR|locus:2080863 - symbol:AT3G51120 species:3702 "Arabi... 122 0.00027 1
MGI|MGI:1933623 - symbol:Smarcd1 "SWI/SNF related, matrix... 117 0.00031 1
ZFIN|ZDB-GENE-080509-2 - symbol:smarcd3b "SWI/SNF related... 116 0.00036 1
WB|WBGene00044072 - symbol:ham-3 species:6239 "Caenorhabd... 112 0.00092 1
>TAIR|locus:2085894 [details] [associations]
symbol:AT3G19080 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009506 "plasmodesma"
evidence=IDA] InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201
GO:GO:0009506 EMBL:CP002686 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF47592 InterPro:IPR014876 Pfam:PF08766 InterPro:IPR019835
SMART:SM00151 KO:K15223 IPI:IPI00544253 RefSeq:NP_188538.1
UniGene:At.53383 ProteinModelPortal:F4J9Z9 SMR:F4J9Z9 PRIDE:F4J9Z9
EnsemblPlants:AT3G19080.1 GeneID:821442 KEGG:ath:AT3G19080
OMA:PLEDNAG Uniprot:F4J9Z9
Length = 462
Score = 526 (190.2 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
Identities = 102/182 (56%), Positives = 137/182 (75%)
Query: 119 KGPAKRRSRKLNNEVKKRGGGFSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQ 178
K K+ ++ + +K GGGF+K+C+LSP+LQ F GVTELARTEVVK LW YI+E +LQ
Sbjct: 243 KRKRKKPAKSVEKPKRKGGGGFAKVCSLSPELQAFTGVTELARTEVVKLLWKYIKENNLQ 302
Query: 179 DPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIWPLDSDDVISVKS-TPKEKQRKQE 237
DPN++R+I+CDE R+LF V++INMFQMNK L+KHIWPL+ + SV S +PK ++K E
Sbjct: 303 DPNDKRSIICDESFRSLFPVESINMFQMNKQLTKHIWPLEDNAGESVSSKSPKNGKQKME 362
Query: 238 RTEDLDEPTRKEKRQKGGKSGFLAPLQLSDALIKFLGTGESALPRSDVIKRMWDYIKEKN 297
D +EP K+K+QK K LAPL LSDAL+KFLG GE++L R+DV+KR+W+YI +
Sbjct: 363 SDGDSEEPNEKDKKQK--KE-VLAPLPLSDALVKFLGDGENSLSRADVVKRLWEYINHND 419
Query: 298 LQ 299
LQ
Sbjct: 420 LQ 421
Score = 349 (127.9 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
Identities = 70/133 (52%), Positives = 97/133 (72%)
Query: 132 EVKKRGGGFSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDER 191
+ KKRGGG +K+ LSPQL++ +G ++L RTEVVK++WAYIREKDLQDP +RR IVCDE
Sbjct: 108 KAKKRGGGITKVSQLSPQLEKVVGASQLGRTEVVKKMWAYIREKDLQDPKDRRKIVCDEL 167
Query: 192 LRALFGVDTINMFQMNKALSKHIWPL-DSDDVIS-VKSTPKEK-----QRKQERTEDLDE 244
L +LF V TINMFQMNKAL+KHIWPL D D + VK +++ +K E++E+++E
Sbjct: 168 LHSLFRVKTINMFQMNKALTKHIWPLGDGDGCANDVKEEDEDEASEGTDKKGEQSEEVEE 227
Query: 245 PTRKEKRQKGGKS 257
+E ++ +S
Sbjct: 228 NKEEESEEQEVRS 240
Score = 193 (73.0 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
Identities = 38/57 (66%), Positives = 46/57 (80%)
Query: 1 MVSDSELIARLQEFLKNSDLNTTTTGIVRRQLEKDFGVDLTDKKIFIREQVDLFLQS 57
MVSD +L+ RL+E L +SDLNT T VRRQLE DFGVDLTDKK +IR+Q+D FL+S
Sbjct: 1 MVSDLDLVTRLREILGSSDLNTATPASVRRQLEADFGVDLTDKKAYIRDQIDTFLES 57
Score = 168 (64.2 bits), Expect = 6.3e-30, Sum P(2) = 6.3e-30
Identities = 36/90 (40%), Positives = 55/90 (61%)
Query: 126 SRKLNNEVKKRGGGFSKLCALSPQLQEFIGVTE--LARTEVVKQLWAYIREKDLQDPNNR 183
S + N + KK+ LS L +F+G E L+R +VVK+LW YI DLQDP+++
Sbjct: 367 SEEPNEKDKKQKKEVLAPLPLSDALVKFLGDGENSLSRADVVKRLWEYINHNDLQDPSDK 426
Query: 184 RNIVCDERLRALFGVDTINMFQMNKALSKH 213
R ++CDE+L+ LF VD+ ++K L+ H
Sbjct: 427 RRVICDEKLKELFEVDSFEDTSVSKLLTNH 456
Score = 110 (43.8 bits), Expect = 7.3e-24, Sum P(2) = 7.3e-24
Identities = 30/83 (36%), Positives = 43/83 (51%)
Query: 219 SDDVISVKSTPKEKQRKQE-RTEDLDEPTRK-EKRQKGGKSGFLAPLQLSDALIKFLGTG 276
S++V K E+Q + R +P + EK ++ G GF LS L F TG
Sbjct: 222 SEEVEENKEEESEEQEVRSLRKRKRKKPAKSVEKPKRKGGGGFAKVCSLSPELQAF--TG 279
Query: 277 ESALPRSDVIKRMWDYIKEKNLQ 299
+ L R++V+K +W YIKE NLQ
Sbjct: 280 VTELARTEVVKLLWKYIKENNLQ 302
Score = 98 (39.6 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 240 EDLDEPTRKEKRQKGGKSGFLAPLQLSDALIKFLGTGESALPRSDVIKRMWDYIKEKNLQ 299
E + P + +KR GG G QLS L K +G S L R++V+K+MW YI+EK+LQ
Sbjct: 101 EKEERPVKAKKR--GG--GITKVSQLSPQLEKVVGA--SQLGRTEVVKKMWAYIREKDLQ 154
>TAIR|locus:2010197 [details] [associations]
symbol:AT1G49520 "AT1G49520" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201
EMBL:CP002684 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF47592
InterPro:IPR014876 Pfam:PF08766 eggNOG:COG5531 InterPro:IPR019835
SMART:SM00151 KO:K15223 EMBL:BT022048 IPI:IPI00546116
RefSeq:NP_175375.2 UniGene:At.49961 ProteinModelPortal:Q501B9
SMR:Q501B9 PRIDE:Q501B9 EnsemblPlants:AT1G49520.1 GeneID:841376
KEGG:ath:AT1G49520 TAIR:At1g49520 InParanoid:Q501B9 OMA:RTIICDE
PhylomeDB:Q501B9 ProtClustDB:CLSN2684550 Genevestigator:Q501B9
Uniprot:Q501B9
Length = 372
Score = 373 (136.4 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 73/130 (56%), Positives = 96/130 (73%)
Query: 123 KRRSRKLNNEVKKRGGGFSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNN 182
KR+ K + KK+GGGF+K+C+LSP+LQ F G +LARTEVVK LW YI+E +LQDP++
Sbjct: 234 KRKPAKSEEKPKKKGGGFTKVCSLSPELQAFTGTPQLARTEVVKMLWKYIKENNLQDPSD 293
Query: 183 RRNIVCDERLRALFGVDTINMFQMNKALSKHIWPLDSDDVISVKSTP-KEKQR-KQERTE 240
+R I+CDE LR+LF V++INMFQMNK L+KHIWPL +D + P K KQ+ K E E
Sbjct: 294 KRTIICDESLRSLFPVESINMFQMNKQLAKHIWPLVQEDEAGTTNDPEKGKQKMKMETDE 353
Query: 241 DLDEPTRKEK 250
D DE + +EK
Sbjct: 354 DNDE-SNEEK 362
Score = 371 (135.7 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 74/133 (55%), Positives = 94/133 (70%)
Query: 132 EVKKRGGGFSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDER 191
+ KKRGGGF+K+C LSPQL++F+G ++LARTEVVK++WAYIRE DLQDP NRRNI+CDE
Sbjct: 94 KAKKRGGGFNKICQLSPQLEKFLGTSQLARTEVVKKMWAYIREHDLQDPTNRRNILCDES 153
Query: 192 LRALFGVDTINMFQMNKALSKHIWPL-DSDDVIS------VKSTPKEKQRKQERTEDLDE 244
L +LF V TINMFQMNKAL+KHIW L D D V T E+ K + E+ E
Sbjct: 154 LHSLFRVKTINMFQMNKALAKHIWALNDGDGCFKNVKEEDVDETSGERDEKDVKIEEALE 213
Query: 245 PTRKEKRQKGGKS 257
+E R++ +S
Sbjct: 214 NNEEESREEEDRS 226
Score = 189 (71.6 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 37/57 (64%), Positives = 47/57 (82%)
Query: 1 MVSDSELIARLQEFLKNSDLNTTTTGIVRRQLEKDFGVDLTDKKIFIREQVDLFLQS 57
MVSDS+L+ +L+E L++SDL TTT VRRQLE FGV+LTDKK F+REQ+D FL+S
Sbjct: 1 MVSDSDLVTQLREILRSSDLETTTPASVRRQLEVYFGVELTDKKAFVREQIDAFLES 57
Score = 132 (51.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 48/147 (32%), Positives = 74/147 (50%)
Query: 162 TEVVKQLWAYIREKDLQD--PNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIWP--L 217
+++V QL +R DL+ P + R +L FGV+ + KA + L
Sbjct: 5 SDLVTQLREILRSSDLETTTPASVRR-----QLEVYFGVELTD----KKAFVREQIDAFL 55
Query: 218 DSDDVISVKSTPKEK-----QRKQERTEDLDEPTRKEKRQKGGKSGFLAPLQLSDALIKF 272
+SD ++ K +E+ Q +E +E+ D+ T + K GF QLS L KF
Sbjct: 56 ESDALLESKPEQEEEDCNGDQNDEEGSENDDDKTELPVKAKKRGGGFNKICQLSPQLEKF 115
Query: 273 LGTGESALPRSDVIKRMWDYIKEKNLQ 299
LGT S L R++V+K+MW YI+E +LQ
Sbjct: 116 LGT--SQLARTEVVKKMWAYIREHDLQ 140
Score = 111 (44.1 bits), Expect = 5.1e-24, Sum P(2) = 5.1e-24
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 226 KSTPKEKQRKQERTEDLDEPTRKEKRQKGGKSGFLAPLQLSDALIKFLGTGESALPRSDV 285
+S +E + ++R +P + E++ K GF LS L F GT + L R++V
Sbjct: 218 ESREEEDRSVRKRKRKKRKPAKSEEKPKKKGGGFTKVCSLSPELQAFTGTPQ--LARTEV 275
Query: 286 IKRMWDYIKEKNLQ 299
+K +W YIKE NLQ
Sbjct: 276 VKMLWKYIKENNLQ 289
>TAIR|locus:2132055 [details] [associations]
symbol:AT4G22360 "AT4G22360" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201
EMBL:CP002687 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF47592
InterPro:IPR014876 Pfam:PF08766 InterPro:IPR019835 SMART:SM00151
KO:K15223 UniGene:At.21353 UniGene:At.70102 EMBL:AY059797
EMBL:AY091266 IPI:IPI00522192 RefSeq:NP_567661.1
ProteinModelPortal:Q93YR5 SMR:Q93YR5 PRIDE:Q93YR5
EnsemblPlants:AT4G22360.1 GeneID:828331 KEGG:ath:AT4G22360
InParanoid:Q93YR5 OMA:IRDQINI ProtClustDB:CLSN2723299
Genevestigator:Q93YR5 Uniprot:Q93YR5
Length = 385
Score = 348 (127.6 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
Identities = 72/169 (42%), Positives = 106/169 (62%)
Query: 134 KKRGG--GFSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDER 191
K++GG G +K+C +SP+L+ +G L RTE+V+QLWAYIR+ +LQDP+N+R I+CD+
Sbjct: 189 KRKGGPGGLNKVCRVSPELEVVVGEPALPRTEIVRQLWAYIRKNNLQDPSNKRKIICDDA 248
Query: 192 LRALFGVDTINMFQMNKALSKHIWPLD-SDDVISVKSTPKEKQRKQERTEDLDEPTRKEK 250
LR +F D +MF+MNK L+KHI PLD S D K E + K E TE +
Sbjct: 249 LRVVFETDCTDMFKMNKLLAKHILPLDPSKDSGQAKKAKTEVETKTETTEPISS------ 302
Query: 251 RQKGGKSGFLAPLQLSDALIKFLGTGESALPRSDVIKRMWDYIKEKNLQ 299
+ + + LS+ L KF GTGE+ + ++I+R+W+YIK NL+
Sbjct: 303 ------TAISSTVTLSEPLGKFFGTGETEMADEEIIRRVWEYIKLNNLE 345
Score = 145 (56.1 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 29/77 (37%), Positives = 48/77 (62%)
Query: 141 SKLCALSPQLQEFIGV--TELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGV 198
S LS L +F G TE+A E+++++W YI+ +L+DP N I CDE+LR L G
Sbjct: 306 SSTVTLSEPLGKFFGTGETEMADEEIIRRVWEYIKLNNLEDPVNPMAIQCDEKLRDLLGC 365
Query: 199 DTINMFQMNKALSKHIW 215
++I+ +N+ L +H++
Sbjct: 366 ESISAVGINEMLRRHMY 382
Score = 106 (42.4 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
Identities = 22/58 (37%), Positives = 39/58 (67%)
Query: 1 MVSDSELIARLQEFLKNSDLNTTTT-GIVRRQLEKDFGVDLTDKKIFIREQVDLFLQS 57
MVSD +L ++ L+ SD ++ T+ + +QLE G+DLT+K FIR+Q+++ L++
Sbjct: 1 MVSDQDLAKGVETLLRQSDPSSLTSLSSIVQQLEAKLGLDLTEKTTFIRDQINILLRA 58
>POMBASE|SPCC285.17 [details] [associations]
symbol:spp27 "RNA polymerase I upstream activation factor
complex subunit Spp27" species:4896 "Schizosaccharomyces pombe"
[GO:0000500 "RNA polymerase I upstream activating factor complex"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0045943 "positive
regulation of transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0001168 "RNA polymerase I upstream control
element sequence-specific DNA binding transcription factor
activity" evidence=TAS] InterPro:IPR003121 InterPro:IPR009057
Pfam:PF02201 PomBase:SPCC285.17 GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF47592 GO:GO:0045943 InterPro:IPR014876
Pfam:PF08766 GO:GO:0000500 eggNOG:COG5531 InterPro:IPR019835
SMART:SM00151 HSSP:Q61466 KO:K15223 OMA:DRREILC OrthoDB:EOG486CP2
PIR:T41263 RefSeq:NP_588345.1 ProteinModelPortal:O74503
STRING:O74503 PRIDE:O74503 EnsemblFungi:SPCC285.17.1 GeneID:2539310
KEGG:spo:SPCC285.17 NextBio:20800476 Uniprot:O74503
Length = 233
Score = 241 (89.9 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 56/141 (39%), Positives = 86/141 (60%)
Query: 119 KGPAKR-RSRKLNNEV---KKRG-----GGFSKLCALSPQLQEFIGVTELARTEVVKQLW 169
K PAKR R RK + E +KR +K LSP+L EF+G+ +L+R + VK+LW
Sbjct: 87 KKPAKRTRKRKEDGEEGGKRKRNQDPANNPLNKPMKLSPKLAEFLGLEQLSRPQTVKKLW 146
Query: 170 AYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIWPLDSDDVISVKSTP 229
YI+ DLQDPN++R I+CD++L+++F VDT++MF MNK L+ + + D + P
Sbjct: 147 EYIKAHDLQDPNDKRTILCDDKLKSVFEVDTLHMFTMNKYLTNLMTKIPDDQL------P 200
Query: 230 KEKQRKQERTEDLDEPTRKEK 250
K + + +E D P ++EK
Sbjct: 201 KPQPKNEEPAAPNDLPKQEEK 221
Score = 108 (43.1 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 230 KEKQRKQERTEDLDEPTRKEKRQKGGKSGFLAPLQLSDALIKFLGTGESALPRSDVIKRM 289
K +R ++R ED +E ++++ Q + P++LS L +FLG + L R +K++
Sbjct: 88 KPAKRTRKRKEDGEEGGKRKRNQDPANNPLNKPMKLSPKLAEFLGLEQ--LSRPQTVKKL 145
Query: 290 WDYIKEKNLQ 299
W+YIK +LQ
Sbjct: 146 WEYIKAHDLQ 155
Score = 38 (18.4 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 11 LQEFLKNSDLNTTTTGIVRRQLEKDFGVDLTDKK 44
+++ L D T + VR+ LE+ VDL+ K
Sbjct: 8 IKQILGTVDRQTVSAKQVRQLLEERRKVDLSAHK 41
>ASPGD|ASPL0000053508 [details] [associations]
symbol:AN0360 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR003121
InterPro:IPR009057 Pfam:PF02201 EMBL:BN001308 GO:GO:0003677
Gene3D:1.10.10.60 EMBL:AACD01000006 SUPFAM:SSF47592
InterPro:IPR014876 Pfam:PF08766 eggNOG:COG5531 InterPro:IPR019835
SMART:SM00151 KO:K15223 OrthoDB:EOG486CP2 RefSeq:XP_657964.1
ProteinModelPortal:Q5BGH0 EnsemblFungi:CADANIAT00002344
GeneID:2876138 KEGG:ani:AN0360.2 HOGENOM:HOG000213060 OMA:FRTFGML
Uniprot:Q5BGH0
Length = 279
Score = 202 (76.2 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 44/100 (44%), Positives = 60/100 (60%)
Query: 120 GPAKRRSRKLNNEVKKRGGGFSKLCALSPQLQEFIG-VTELARTEVVKQLWAYIREKDLQ 178
G +K+N R GGF K LSP L +G L+R + VK+LW YI E DLQ
Sbjct: 184 GSGSESGKKVN-----RSGGFHKPLNLSPALSALLGGAATLSRPQTVKKLWEYIHEHDLQ 238
Query: 179 DPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIWPLD 218
DP++RR I CD+ +RA+F D I+MF M K LS++++ D
Sbjct: 239 DPSDRRQIRCDDPMRAVFKQDRIHMFTMTKILSQNLYSPD 278
Score = 114 (45.2 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 226 KSTPKEKQRKQERTEDLDEPTRKEKRQKGGKSG-FLAPLQLSDALIKFLGTGESALPRSD 284
KST K +K + +D D + E +K +SG F PL LS AL LG G + L R
Sbjct: 166 KSTAKTA-KKVKAEDDSDIGSGSESGKKVNRSGGFHKPLNLSPALSALLG-GAATLSRPQ 223
Query: 285 VIKRMWDYIKEKNLQ 299
+K++W+YI E +LQ
Sbjct: 224 TVKKLWEYIHEHDLQ 238
Score = 72 (30.4 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 6 ELIARLQEFLKNSDLNTTTTGIVRRQLEKDFGVDLTDKKIFIR----EQVDLFLQSQ 58
+ I + L SDLNT + +R+ L+ + G DLT +K ++ E+ D+F + +
Sbjct: 10 QYIPIIDSILSASDLNTISEKRIRKGLQDEIGYDLTPQKAAVKQLIMERFDIFAEKK 66
>UNIPROTKB|G4MMD0 [details] [associations]
symbol:MGG_01988 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201 GO:GO:0003677
Gene3D:1.10.10.60 EMBL:CM001231 SUPFAM:SSF47592 InterPro:IPR014876
Pfam:PF08766 InterPro:IPR019835 SMART:SM00151 KO:K15223
RefSeq:XP_003708728.1 ProteinModelPortal:G4MMD0
EnsemblFungi:MGG_01988T0 GeneID:2681107 KEGG:mgr:MGG_01988
Uniprot:G4MMD0
Length = 285
Score = 226 (84.6 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 40/87 (45%), Positives = 61/87 (70%)
Query: 134 KKRGGGFSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLR 193
+K GGGF K LS L E G L+R +VVK+LW +I+ +LQDPN++R I+CDE+++
Sbjct: 199 RKAGGGFQKPFHLSASLAEVCGEPTLSRPQVVKKLWEHIKGNNLQDPNDKRQILCDEKMQ 258
Query: 194 ALFGVDTINMFQMNKALSKHIWPLDSD 220
A+F ++NMF MNK + H++P+D +
Sbjct: 259 AVFKQSSLNMFAMNKLIGSHLYPVDEE 285
Score = 106 (42.4 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 28/75 (37%), Positives = 40/75 (53%)
Query: 226 KSTPKEKQRKQERTEDLD-EPTRKEKRQKGGKSGFLAPLQLSDALIKFLGTGESALPRSD 284
K T K+ + K +D D +KR+ GG GF P LS +L + G E L R
Sbjct: 173 KVTKKKSKAKVAADDDEDLSGDGTQKRKAGG--GFQKPFHLSASLAEVCG--EPTLSRPQ 228
Query: 285 VIKRMWDYIKEKNLQ 299
V+K++W++IK NLQ
Sbjct: 229 VVKKLWEHIKGNNLQ 243
Score = 40 (19.1 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 3 SDSELIARLQE-FLKNSDLNTTTTGIVRRQLEKDFGV-DLTDKKIFIR 48
+D E + + L+ +DL T T +R LE DL++ K I+
Sbjct: 8 ADEERYTNIIDGILQTADLQTVTMKKIRNGLETALDCKDLSEHKQAIK 55
>SGD|S000004846 [details] [associations]
symbol:TRI1 "Non-essential sumoylated protein of unknown
function" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005730 "nucleolus" evidence=IEA;IDA]
InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201 SGD:S000004846
GO:GO:0005737 GO:GO:0005730 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 EMBL:BK006946 EMBL:Z49939
SUPFAM:SSF47592 InterPro:IPR014876 Pfam:PF08766 eggNOG:COG5531
InterPro:IPR019835 SMART:SM00151 EMBL:AY557975 PIR:S57600
RefSeq:NP_013960.1 ProteinModelPortal:Q05024 SMR:Q05024
DIP:DIP-1551N IntAct:Q05024 MINT:MINT-386791 STRING:Q05024
PaxDb:Q05024 PeptideAtlas:Q05024 EnsemblFungi:YMR233W GeneID:855273
KEGG:sce:YMR233W CYGD:YMR233w GeneTree:ENSGT00390000006048
HOGENOM:HOG000000765 KO:K15223 OMA:DRREILC OrthoDB:EOG486CP2
NextBio:978891 Genevestigator:Q05024 GermOnline:YMR233W
Uniprot:Q05024
Length = 226
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 46/127 (36%), Positives = 75/127 (59%)
Query: 119 KGPAKRRSRKLNNEVKKRGGGFSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQ 178
K +K + +K N+ + LS LQ+F+G EL RT+VVK +W YI+E DLQ
Sbjct: 99 KSESKSKRKKKKNDSPDSNSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQ 158
Query: 179 DPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIWPLDSDDVISVKSTPKEKQRKQER 238
+P +RR I+CDE++ +FG + MF MNK L+KH++ + D+++ + K+ K+ +
Sbjct: 159 NPKDRREILCDEKMEPIFG-KKMTMFSMNKLLTKHLF--NPDEIVKHEEEQKQTPEKEIK 215
Query: 239 TEDLDEP 245
E+ P
Sbjct: 216 LENESLP 222
>SGD|S000005821 [details] [associations]
symbol:UAF30 "Subunit of UAF (upstream activation factor)"
species:4932 "Saccharomyces cerevisiae" [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0001168
"RNA polymerase I upstream control element sequence-specific DNA
binding transcription factor activity" evidence=IMP] [GO:0001165
"RNA polymerase I upstream control element sequence-specific DNA
binding" evidence=IDA] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0000500 "RNA
polymerase I upstream activating factor complex" evidence=IDA]
InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201 SGD:S000005821
EMBL:BK006948 GO:GO:0006355 Gene3D:1.10.10.60 GO:GO:0006325
SUPFAM:SSF47592 InterPro:IPR014876 Pfam:PF08766 GO:GO:0042790
GO:GO:0000500 GO:GO:0001165 eggNOG:COG5531 InterPro:IPR019835
SMART:SM00151 RefSeq:NP_014940.4 GeneID:854472 KEGG:sce:YOR297C
GeneTree:ENSGT00390000006048 HOGENOM:HOG000000765 KO:K15223
OrthoDB:EOG486CP2 EMBL:Z75203 PIR:S67199 RefSeq:NP_014938.3
ProteinModelPortal:Q08747 SMR:Q08747 IntAct:Q08747 STRING:Q08747
EnsemblFungi:YOR295W GeneID:854470 KEGG:sce:YOR295W CYGD:YOR295w
OMA:EDNENDT NextBio:976765 Genevestigator:Q08747 GermOnline:YOR295W
Uniprot:Q08747
Length = 228
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 43/101 (42%), Positives = 60/101 (59%)
Query: 120 GPAKRRSRKLNNEVKKRGGGFSKL------CALSPQLQEFIGVTELARTEVVKQLWAYIR 173
G K S V+K+ G SK LS L +G EL RTEVV++LWAYI+
Sbjct: 94 GEEKNDSETKGTHVEKKKGTVSKSPISTRKVTLSKSLASLLGEHELTRTEVVRRLWAYIK 153
Query: 174 EKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHI 214
+LQ+PNN++ I+CDE+L + G T NMF+M+K L+ H+
Sbjct: 154 AHNLQNPNNKKEILCDEKLELILGKST-NMFEMHKILASHM 193
>TAIR|locus:2060469 [details] [associations]
symbol:AT2G14880 "AT2G14880" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:AC005396
EMBL:CP002685 GenomeReviews:CT485783_GR SUPFAM:SSF47592
eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151 EMBL:AF370580
IPI:IPI00517159 PIR:E84522 RefSeq:NP_565366.1 UniGene:At.13059
ProteinModelPortal:O82326 SMR:O82326 STRING:O82326 PaxDb:O82326
PRIDE:O82326 EnsemblPlants:AT2G14880.1 GeneID:815977
KEGG:ath:AT2G14880 TAIR:At2g14880 HOGENOM:HOG000225318
InParanoid:O82326 OMA:QDIVELP PhylomeDB:O82326
ProtClustDB:CLSN2685737 Genevestigator:O82326 Uniprot:O82326
Length = 141
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 32/76 (42%), Positives = 53/76 (69%)
Query: 139 GFSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALF-G 197
G K +SP++Q+ + + E+ART+ +K++WAYI+E DLQDP N+R I+CDE+L+ +F G
Sbjct: 64 GIMKPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEG 123
Query: 198 VDTINMFQMNKALSKH 213
D + ++ K + H
Sbjct: 124 RDRVGFLEIAKLIGPH 139
>TAIR|locus:505006294 [details] [associations]
symbol:AT2G35605 "AT2G35605" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002685
GenomeReviews:CT485783_GR EMBL:AC006068 EMBL:AC005314
SUPFAM:SSF47592 eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151
HOGENOM:HOG000225318 EMBL:AF370234 EMBL:AY059124 EMBL:AY088833
EMBL:AK118403 IPI:IPI00544861 RefSeq:NP_565810.1 UniGene:At.19064
ProteinModelPortal:Q93W30 SMR:Q93W30 STRING:Q93W30 PaxDb:Q93W30
PRIDE:Q93W30 EnsemblPlants:AT2G35605.1 GeneID:818127
KEGG:ath:AT2G35605 TAIR:At2g35605 InParanoid:Q93W30 OMA:AVKKIWE
PhylomeDB:Q93W30 ProtClustDB:CLSN2688164 ArrayExpress:Q93W30
Genevestigator:Q93W30 Uniprot:Q93W30
Length = 109
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 34/80 (42%), Positives = 55/80 (68%)
Query: 135 KRGGGFSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRA 194
++G G K+ +S L FIG E++RT VK++W YI+ +LQ+P N+R I+CDE+L+
Sbjct: 25 RQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKT 84
Query: 195 LF-GVDTINMFQMNKALSKH 213
+F G DT+ +++K LS+H
Sbjct: 85 IFSGKDTVGFLEISKLLSQH 104
>TAIR|locus:2096404 [details] [associations]
symbol:AT3G03590 "AT3G03590" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0006661 "phosphatidylinositol biosynthetic
process" evidence=RCA] InterPro:IPR003121 Pfam:PF02201
EMBL:CP002686 EMBL:AC009327 SUPFAM:SSF47592 InterPro:IPR019835
SMART:SM00151 EMBL:BT003701 EMBL:AK117771 IPI:IPI00546282
RefSeq:NP_566210.1 UniGene:At.40956 ProteinModelPortal:Q9SS61
SMR:Q9SS61 PRIDE:Q9SS61 EnsemblPlants:AT3G03590.1 GeneID:821215
KEGG:ath:AT3G03590 TAIR:At3g03590 InParanoid:Q9SS61 OMA:REIFCDE
PhylomeDB:Q9SS61 ProtClustDB:CLSN2917083 Genevestigator:Q9SS61
Uniprot:Q9SS61
Length = 143
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 38/99 (38%), Positives = 60/99 (60%)
Query: 119 KGPAKRRSR-KLNNEVKK--RGGGFSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREK 175
K AK + + K ++ KK R G K+ +SP L +F+G E +RT+ +K +W YI+
Sbjct: 40 KAKAKPKPKAKSDSPAKKTPRSTGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSH 99
Query: 176 DLQDPNNRRNIVCDERLRALF-GVDTINMFQMNKALSKH 213
DLQ+P ++R I CDE L+ +F G D + +++K LS H
Sbjct: 100 DLQNPADKREIFCDETLKLIFEGKDKVGFLEISKLLSPH 138
Score = 106 (42.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 229 PKEKQRKQERTEDLDEPTRKEKRQKGGKSGFLAPLQLSDALIKFLGTGESALPRSDVIKR 288
PK K + + + + D P +K R +G +S L +FLGTGE++ R+D IK
Sbjct: 39 PKAKAKPKPKAKS-DSPAKKTPRS----TGIFKVTPVSPVLAQFLGTGETS--RTDAIKG 91
Query: 289 MWDYIKEKNLQ 299
+W YIK +LQ
Sbjct: 92 IWTYIKSHDLQ 102
>TAIR|locus:2116189 [details] [associations]
symbol:AT4G34290 "AT4G34290" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002687
EMBL:AL035521 EMBL:AL161585 SUPFAM:SSF47592 InterPro:IPR019835
SMART:SM00151 ProtClustDB:CLSN2685737 EMBL:BT001198 IPI:IPI00535550
PIR:T04775 RefSeq:NP_195155.1 UniGene:At.2612
ProteinModelPortal:Q9SYZ4 SMR:Q9SYZ4 STRING:Q9SYZ4 PRIDE:Q9SYZ4
EnsemblPlants:AT4G34290.1 GeneID:829579 KEGG:ath:AT4G34290
TAIR:At4g34290 InParanoid:Q9SYZ4 OMA:REPRGIM PhylomeDB:Q9SYZ4
Genevestigator:Q9SYZ4 Uniprot:Q9SYZ4
Length = 144
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 31/76 (40%), Positives = 52/76 (68%)
Query: 139 GFSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALF-G 197
G K +S +Q+ +GV E+ RT+ +K++WAYI+E DLQDP N+R+I+CDE+L+ +F G
Sbjct: 67 GIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEG 126
Query: 198 VDTINMFQMNKALSKH 213
+ + ++ K + H
Sbjct: 127 KERVGFLEIAKLIGPH 142
>FB|FBgn0035370 [details] [associations]
symbol:CG1240 species:7227 "Drosophila melanogaster"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201 EMBL:AE014296
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF47592 InterPro:IPR014876
Pfam:PF08766 KO:K15223 OMA:FRTFGML GeneTree:ENSGT00520000059577
EMBL:AY061488 RefSeq:NP_647745.1 UniGene:Dm.3583 SMR:Q9VZY0
MINT:MINT-927607 STRING:Q9VZY0 EnsemblMetazoa:FBtr0072969
GeneID:38341 KEGG:dme:Dmel_CG1240 UCSC:CG1240-RA
FlyBase:FBgn0035370 eggNOG:NOG264204 InParanoid:Q9VZY0
OrthoDB:EOG4M907W ChiTaRS:CG1240 GenomeRNAi:38341 NextBio:808111
Uniprot:Q9VZY0
Length = 244
Score = 161 (61.7 bits), Expect = 6.9e-14, Sum P(2) = 6.9e-14
Identities = 33/96 (34%), Positives = 54/96 (56%)
Query: 119 KGPAKRRSRKLNNEVK-KRGGGFSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDL 177
K AK++++ ++ GF++ LSP+L +G + L R EVVK++WA I+E+DL
Sbjct: 146 KPAAKKKAKAAGGTGSGRKSTGFTRAYNLSPELSALMGESSLPRHEVVKKVWAIIKERDL 205
Query: 178 QDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKH 213
DP N++ +CD+ L + + F M K L H
Sbjct: 206 YDPKNKQFAICDDELMKVMKIRRFRTFGMLKHLKPH 241
Score = 91 (37.1 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 29/96 (30%), Positives = 46/96 (47%)
Query: 211 SKHIWPLDSDDVISVKSTPKEKQRKQERT-EDLDEPTRKEKRQKGG------KS-GFLAP 262
+KH P ++ + E + E + +P K+K + G KS GF
Sbjct: 112 TKHKAPKKKRKTLNADDSGTESDAGSDSDYEVVKKPAAKKKAKAAGGTGSGRKSTGFTRA 171
Query: 263 LQLSDALIKFLGTGESALPRSDVIKRMWDYIKEKNL 298
LS L +G ES+LPR +V+K++W IKE++L
Sbjct: 172 YNLSPELSALMG--ESSLPRHEVVKKVWAIIKERDL 205
Score = 59 (25.8 bits), Expect = 6.9e-14, Sum P(2) = 6.9e-14
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 2 VSDSELIARLQEFLKNSDLNTTTTGIVRRQLEKDFGVDLTDKK 44
+S +L +Q LK++DL T + VR Q+E L +K
Sbjct: 4 ISSEDLRREIQAVLKDADLATISAKRVREQVEGKLNCSLLSRK 46
>WB|WBGene00020779 [details] [associations]
symbol:T24G10.2 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=ISS] [GO:0008134 "transcription factor binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR003121 Pfam:PF02201 GO:GO:0005634 GO:GO:0009792
GO:GO:0006351 GO:GO:0008134 SUPFAM:SSF47592 InterPro:IPR014876
Pfam:PF08766 eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151
KO:K15223 EMBL:FO081422 PIR:T16937 RefSeq:NP_498159.2
ProteinModelPortal:Q22749 SMR:Q22749 STRING:Q22749 PaxDb:Q22749
EnsemblMetazoa:T24G10.2 GeneID:175747 KEGG:cel:CELE_T24G10.2
UCSC:T24G10.2 CTD:175747 WormBase:T24G10.2
GeneTree:ENSGT00520000059577 HOGENOM:HOG000017704 InParanoid:Q22749
OMA:TKLCYIS NextBio:889470 Uniprot:Q22749
Length = 347
Score = 167 (63.8 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 38/128 (29%), Positives = 68/128 (53%)
Query: 123 KRRSRKLNNEVKKRGGGFSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNN 182
K++ + N ++ G +KLC +S +LQ+ + R +VVK LW YI+E +L+DP N
Sbjct: 179 KKKVKDPNADMSGVFGPMTKLCYISTELQQVTKDQWMKRCDVVKALWDYIKENNLKDPKN 238
Query: 183 RRNIVCDERLRALFGVDTINMFQMNKALSKHIWPLDSDDVISVKSTPKEKQRKQERTEDL 242
+ I+CD L ++F + + F M K L++HI + + D+ E + + R E
Sbjct: 239 GQYIICDSTLESIFKKNRLKGFGMVKFLTRHI--IGTSDMAPEMREEAEAEMDKRRKEWK 296
Query: 243 DEPTRKEK 250
+ +K +
Sbjct: 297 ERQAKKRE 304
>TAIR|locus:2028671 [details] [associations]
symbol:AT1G31760 "AT1G31760" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002684
GenomeReviews:CT485782_GR EMBL:AC074360 EMBL:AC079041
SUPFAM:SSF47592 eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151
HOGENOM:HOG000225318 ProtClustDB:CLSN2688164 EMBL:AY085089
EMBL:BT024754 IPI:IPI00536805 PIR:B86441 RefSeq:NP_564382.1
UniGene:At.40279 ProteinModelPortal:Q9C504 SMR:Q9C504 IntAct:Q9C504
STRING:Q9C504 PaxDb:Q9C504 PRIDE:Q9C504 EnsemblPlants:AT1G31760.1
GeneID:840063 KEGG:ath:AT1G31760 TAIR:At1g31760 InParanoid:Q9C504
OMA:GITEIMK PhylomeDB:Q9C504 Genevestigator:Q9C504 Uniprot:Q9C504
Length = 112
Score = 149 (57.5 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 133 VKKRGGGFSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERL 192
V G G K +S QL F G EL R +K++W Y++ +LQ+P N++ I CD++L
Sbjct: 26 VAGEGKGIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKL 85
Query: 193 RALF-GVDTINMFQMNKALSKH 213
+ +F G D + + ++ K LS H
Sbjct: 86 KTIFDGKDKVGITEIMKLLSPH 107
>TAIR|locus:2116302 [details] [associations]
symbol:AT4G26810 "AT4G26810" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002687
GenomeReviews:CT486007_GR EMBL:AL035440 EMBL:AL161565
SUPFAM:SSF47592 HOGENOM:HOG000225318 EMBL:BT010795 EMBL:BT011270
IPI:IPI00527090 PIR:T04804 RefSeq:NP_001119064.1 RefSeq:NP_194411.1
UniGene:At.32149 ProteinModelPortal:Q9SZ21 SMR:Q9SZ21 IntAct:Q9SZ21
PRIDE:Q9SZ21 DNASU:828788 EnsemblPlants:AT4G26810.1
EnsemblPlants:AT4G26810.2 GeneID:828788 KEGG:ath:AT4G26810
TAIR:At4g26810 eggNOG:NOG291903 InParanoid:Q9SZ21 OMA:MSHISFF
PhylomeDB:Q9SZ21 ProtClustDB:CLSN2686051 ArrayExpress:Q9SZ21
Genevestigator:Q9SZ21 Uniprot:Q9SZ21
Length = 106
Score = 134 (52.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 25/91 (27%), Positives = 50/91 (54%)
Query: 124 RRSRKLNNEVKKRGGGFSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNR 183
+R +K + K+ G L L L+ F+G ++++R ++W+YI+ +LQDP N+
Sbjct: 4 QRLKKAITDNPKKLGNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDPKNK 63
Query: 184 RNIVCDERLRA-LFGVDTINMFQMNKALSKH 213
++CDE+L++ L G + + + + H
Sbjct: 64 NVVICDEKLKSILLGKQRVELVDLPSLIKLH 94
>ASPGD|ASPL0000017588 [details] [associations]
symbol:AN10524 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0016586 "RSC
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003121 Pfam:PF02201
EMBL:BN001302 SUPFAM:SSF47592 EnsemblFungi:CADANIAT00004436
OMA:TDKNIPD Uniprot:C8V4A6
Length = 472
Score = 140 (54.3 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 29/73 (39%), Positives = 44/73 (60%)
Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
LS +L E + V E R+ +V +W YIR LQ+ +R + CD+RLRA+FG D + Q
Sbjct: 250 LSKELAEVLDVEEETRSGIVLGIWDYIRAMGLQEDEEKRLVRCDDRLRAIFGRDQMFFPQ 309
Query: 206 MNKALSKHIWPLD 218
+ +++ H PLD
Sbjct: 310 IPESIGPHTSPLD 322
>WB|WBGene00015971 [details] [associations]
symbol:swsn-2.2 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0070603 "SWI/SNF superfamily-type
complex" evidence=ISS] [GO:0001085 "RNA polymerase II transcription
factor binding" evidence=ISS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR003121 Pfam:PF02201 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006357 GO:GO:0040035 GO:GO:0001085
SUPFAM:SSF47592 EMBL:FO080611 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
InterPro:IPR019835 SMART:SM00151 OMA:TDKNIPD PIR:T15185
RefSeq:NP_491329.2 ProteinModelPortal:O02101 SMR:O02101
MINT:MINT-6668665 STRING:O02101 PaxDb:O02101
EnsemblMetazoa:C18E3.2.1 EnsemblMetazoa:C18E3.2.2
EnsemblMetazoa:C18E3.2.3 GeneID:172018 KEGG:cel:CELE_C18E3.2
UCSC:C18E3.2.2 CTD:172018 WormBase:C18E3.2 InParanoid:O02101
NextBio:873681 GO:GO:0070603 Uniprot:O02101
Length = 449
Score = 133 (51.9 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 29/98 (29%), Positives = 48/98 (48%)
Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
L P+L + +G+ R ++++ LW YI+ LQDP R I CD L FGV+ + +
Sbjct: 230 LHPRLAKVLGIATETRPKIIEALWQYIKTHGLQDPQERDIINCDTFLSQCFGVNRMRFME 289
Query: 206 MNKALSKHIWPLDSDDVISVKSTPKEKQRKQERTEDLD 243
+ L + + D + + PKE Q + D+D
Sbjct: 290 VPNKLHQLLQQTDPLEFNHIIQRPKEGQEQVSTCYDID 327
>UNIPROTKB|Q2TBN1 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9913 "Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS]
[GO:0071564 "npBAF complex" evidence=ISS] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0007399 "nervous system
development" evidence=IEA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0007399 GO:GO:0016568 GO:GO:0071564 GO:GO:0071565
SUPFAM:SSF47592 eggNOG:COG5531 EMBL:BC109890 IPI:IPI00723099
RefSeq:NP_001033648.1 UniGene:Bt.87407 ProteinModelPortal:Q2TBN1
SMR:Q2TBN1 STRING:Q2TBN1 PRIDE:Q2TBN1 GeneID:533232 KEGG:bta:533232
CTD:6602 HOGENOM:HOG000240746 InParanoid:Q2TBN1 KO:K11650
OrthoDB:EOG4DNF48 NextBio:20875968 InterPro:IPR019835 SMART:SM00151
Uniprot:Q2TBN1
Length = 515
Score = 126 (49.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 27/107 (25%), Positives = 55/107 (51%)
Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
L P+L +G+ R +++ LW YI+ LQDP+ R ++CD+ L+ +F + +
Sbjct: 297 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSE 356
Query: 206 MNKALSKHIWPLDS---DDVISVKSTPKEKQRKQERTEDLDEPTRKE 249
+ + L + P + + VISV ++K + E++D+ + +
Sbjct: 357 IPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDEEVDDTLKTQ 403
>POMBASE|SPAC23G3.10c [details] [associations]
symbol:ssr3 "SWI/SNF and RSC complex subunit Ssr3"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IC]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0016586 "RSC
complex" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
PomBase:SPAC23G3.10c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006357 GO:GO:0006338 GO:GO:0000790
GO:GO:0016514 GO:GO:0016586 GO:GO:0000991 SUPFAM:SSF47592
eggNOG:COG5531 OrthoDB:EOG4N8VDJ KO:K11650 OMA:PLKSQMS PIR:T50184
RefSeq:NP_593110.1 HSSP:Q61466 ProteinModelPortal:Q9P7S3
DIP:DIP-48385N STRING:Q9P7S3 EnsemblFungi:SPAC23G3.10c.1
GeneID:2541438 KEGG:spo:SPAC23G3.10c NextBio:20802540
Uniprot:Q9P7S3
Length = 425
Score = 121 (47.7 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 33/124 (26%), Positives = 55/124 (44%)
Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
LS +G+ E R ++V LW YI+ LQD +R I CD+ LR LF D + +
Sbjct: 208 LSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFEADRLYFPR 267
Query: 206 MNKALSKHIWPLDSDDVISVKSTPKEKQRKQERTEDLDEPTRKEKRQKGGKSGFLAPLQL 265
+ + +++ + P+D I + T + E+ D E + FLA +
Sbjct: 268 IPELMNRFLEPIDP---IVIPYTINVSEHTVEKVTIFDIRINTEDPRHSQIRSFLATMMS 324
Query: 266 SDAL 269
D +
Sbjct: 325 QDKI 328
>TAIR|locus:2827287 [details] [associations]
symbol:NERD "Needed for RDR2-independent DNA methylation"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0031048
"chromatin silencing by small RNA" evidence=IMP] [GO:0042393
"histone binding" evidence=IDA] InterPro:IPR000571
InterPro:IPR001965 InterPro:IPR003121 InterPro:IPR003169
InterPro:IPR004343 InterPro:IPR018144 InterPro:IPR019787
Pfam:PF00642 Pfam:PF02201 Pfam:PF02213 Pfam:PF03126 PROSITE:PS50016
PROSITE:PS50103 PROSITE:PS50829 PROSITE:PS51360 SMART:SM00249
SMART:SM00444 SMART:SM00719 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006352 GO:GO:0016570 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 eggNOG:NOG12793
InterPro:IPR019786 PROSITE:PS01359 GO:GO:0031047 GO:GO:0042393
SUPFAM:SSF55277 EMBL:AC007047 EMBL:DQ446507 IPI:IPI00546025
PIR:F84540 PIR:G84540 RefSeq:NP_179241.4 UniGene:At.40269
HSSP:Q9FT92 PaxDb:Q9SIV5 PRIDE:Q9SIV5 GeneID:816147
KEGG:ath:AT2G16485 TAIR:At2g16485 HOGENOM:HOG000215989
InParanoid:Q9SIV5 ArrayExpress:Q9SIV5 Genevestigator:Q9SIV5
GO:GO:0032776 GO:GO:0010964 SUPFAM:SSF47592 Uniprot:Q9SIV5
Length = 1773
Score = 126 (49.4 bits), Expect = 0.00014, P = 0.00014
Identities = 30/102 (29%), Positives = 50/102 (49%)
Query: 159 LARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIWPLD 218
L EV L AYI+ +L+DP + ++CD RL+ LFG + F+M L H +
Sbjct: 827 LPMLEVQTLLLAYIKRYNLRDPRRKSQVICDSRLQNLFGKSHVGHFEMLNLLDSHFLKKE 886
Query: 219 SDDVISVKS--TPKEKQRKQERTEDLDEPTR--KEKRQKGGK 256
+ ++ E+ + E+LD P + K+K++K K
Sbjct: 887 QNQADDIQGDIVDTEEPNHVDVDENLDHPVKSGKDKKRKTRK 928
>UNIPROTKB|H9KZE0 [details] [associations]
symbol:SMARCD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0032947 "protein
complex scaffold" evidence=IEA] [GO:0048096 "chromatin-mediated
maintenance of transcription" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR003121 Pfam:PF02201 SUPFAM:SSF47592
GeneTree:ENSGT00390000017809 InterPro:IPR019835 SMART:SM00151
OMA:NTFYPSK EMBL:AADN02072424 Ensembl:ENSGALT00000010024
Uniprot:H9KZE0
Length = 516
Score = 120 (47.3 bits), Expect = 0.00014, P = 0.00014
Identities = 26/107 (24%), Positives = 54/107 (50%)
Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
L P+L +G+ R +++ LW YI+ LQDP+ R ++CD+ L+ +F + +
Sbjct: 298 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREYVICDKYLQQIFESQRMKFSE 357
Query: 206 MNKALSKHIWPLDS---DDVISVKSTPKEKQRKQERTEDLDEPTRKE 249
+ + L + P + + VISV ++K + ++D+ + +
Sbjct: 358 IPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQ 404
>UNIPROTKB|F1NJN5 [details] [associations]
symbol:SMARCD3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0035257 "nuclear hormone
receptor binding" evidence=IEA] [GO:0042692 "muscle cell
differentiation" evidence=IEA] [GO:0043393 "regulation of protein
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0000790 "nuclear chromatin" evidence=IEA] [GO:0002052 "positive
regulation of neuroblast proliferation" evidence=IEA] [GO:0003139
"secondary heart field specification" evidence=IEA] [GO:0003219
"cardiac right ventricle formation" evidence=IEA] [GO:0003407
"neural retina development" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0005737
GO:GO:0045893 GO:GO:0043393 GO:GO:0006351 GO:GO:0006338
GO:GO:0000790 GO:GO:0071564 GO:GO:0071565 GO:GO:0006337
GO:GO:0030374 SUPFAM:SSF47592 GeneTree:ENSGT00390000017809
InterPro:IPR019835 SMART:SM00151 OMA:PLKSQMS EMBL:AADN02078761
EMBL:AADN02078762 EMBL:AADN02078763 EMBL:AADN02078764
EMBL:AADN02078765 EMBL:AADN02078766 IPI:IPI00583326
Ensembl:ENSGALT00000021298 Uniprot:F1NJN5
Length = 462
Score = 119 (46.9 bits), Expect = 0.00015, P = 0.00015
Identities = 30/115 (26%), Positives = 54/115 (46%)
Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
L P+L +G+ R+ +++ LW YI+ LQD +++ I CD+ + +F + +
Sbjct: 244 LDPRLARLLGIHTQTRSAIIQALWQYIKTNKLQDSHDKEYINCDKYFQQIFDCPRLKFSE 303
Query: 206 MNKALSKHIWPLDSDDVISVKSTPKEKQRKQERTEDLDEPTRKEKRQKGGKSGFL 260
+ + L+ + P D + + S Q+K D+D E KG S FL
Sbjct: 304 IPQRLTNLLLPPDPIVINHIISVDPNDQKKTA-CYDID--VEVEDPLKGQMSSFL 355
>UNIPROTKB|F1MTG9 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9913 "Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=IEA]
[GO:0032947 "protein complex scaffold" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0006337 "nucleosome
disassembly" evidence=IEA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0048096
GO:GO:0006337 SUPFAM:SSF47592 GeneTree:ENSGT00390000017809
IPI:IPI00723099 UniGene:Bt.87407 InterPro:IPR019835 SMART:SM00151
OMA:NTFYPSK EMBL:DAAA02012932 Ensembl:ENSBTAT00000001284
Uniprot:F1MTG9
Length = 515
Score = 119 (46.9 bits), Expect = 0.00018, P = 0.00018
Identities = 26/107 (24%), Positives = 54/107 (50%)
Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
L P+L +G+ R +++ LW YI+ LQDP+ R ++CD+ L+ +F + +
Sbjct: 297 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSE 356
Query: 206 MNKALSKHIWPLDS---DDVISVKSTPKEKQRKQERTEDLDEPTRKE 249
+ + L + P + + VISV ++K + ++D+ + +
Sbjct: 357 IPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQ 403
>UNIPROTKB|Q96GM5 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9606 "Homo sapiens" [GO:0007399 "nervous system
development" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0032947 "protein complex scaffold" evidence=IDA]
[GO:0048096 "chromatin-mediated maintenance of transcription"
evidence=IMP] [GO:0006338 "chromatin remodeling" evidence=IDA;IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF
complex" evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS]
[GO:0003713 "transcription coactivator activity" evidence=NAS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=NAS] [GO:0006337 "nucleosome disassembly"
evidence=IDA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0007399
GO:GO:0006357 GO:GO:0003713 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0032947 EMBL:AC025154 GO:GO:0048096
GO:GO:0006337 SUPFAM:SSF47592 eggNOG:COG5531 CTD:6602
HOGENOM:HOG000240746 KO:K11650 OrthoDB:EOG4DNF48 InterPro:IPR019835
SMART:SM00151 EMBL:AF109733 EMBL:U66617 EMBL:BC009368
IPI:IPI00852816 IPI:IPI00853408 RefSeq:NP_003067.3
RefSeq:NP_620710.2 UniGene:Hs.79335 ProteinModelPortal:Q96GM5
SMR:Q96GM5 DIP:DIP-33390N IntAct:Q96GM5 MINT:MINT-1144212
STRING:Q96GM5 PhosphoSite:Q96GM5 DMDM:238054318 PaxDb:Q96GM5
PRIDE:Q96GM5 DNASU:6602 Ensembl:ENST00000381513
Ensembl:ENST00000394963 GeneID:6602 KEGG:hsa:6602 UCSC:uc001rvx.4
UCSC:uc001rvy.4 GeneCards:GC12P050478 HGNC:HGNC:11106 HPA:HPA004101
MIM:601735 neXtProt:NX_Q96GM5 PharmGKB:PA35956 HOVERGEN:HBG054046
InParanoid:Q96GM5 OMA:NTFYPSK ChiTaRS:SMARCD1 GenomeRNAi:6602
NextBio:25683 ArrayExpress:Q96GM5 Bgee:Q96GM5 CleanEx:HS_SMARCD1
Genevestigator:Q96GM5 Uniprot:Q96GM5
Length = 515
Score = 119 (46.9 bits), Expect = 0.00018, P = 0.00018
Identities = 26/107 (24%), Positives = 54/107 (50%)
Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
L P+L +G+ R +++ LW YI+ LQDP+ R ++CD+ L+ +F + +
Sbjct: 297 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSE 356
Query: 206 MNKALSKHIWPLDS---DDVISVKSTPKEKQRKQERTEDLDEPTRKE 249
+ + L + P + + VISV ++K + ++D+ + +
Sbjct: 357 IPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQ 403
>RGD|1305406 [details] [associations]
symbol:Smarcd1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 1"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006337 "nucleosome disassembly" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0016514 "SWI/SNF complex"
evidence=IEA;ISO] [GO:0032947 "protein complex scaffold"
evidence=IEA;ISO] [GO:0048096 "chromatin-mediated maintenance of
transcription" evidence=IEA;ISO] [GO:0071564 "npBAF complex"
evidence=IEA;ISO] [GO:0071565 "nBAF complex" evidence=IEA;ISO]
InterPro:IPR003121 Pfam:PF02201 RGD:1305406 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0048096 GO:GO:0006337
EMBL:CH474035 SUPFAM:SSF47592 GeneTree:ENSGT00390000017809 CTD:6602
KO:K11650 OrthoDB:EOG4DNF48 InterPro:IPR019835 SMART:SM00151
IPI:IPI00366479 RefSeq:NP_001102222.1 UniGene:Rn.21196
Ensembl:ENSRNOT00000043163 GeneID:363002 KEGG:rno:363002
UCSC:RGD:1305406 NextBio:682087 Uniprot:D3ZBS9
Length = 515
Score = 119 (46.9 bits), Expect = 0.00018, P = 0.00018
Identities = 26/107 (24%), Positives = 54/107 (50%)
Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
L P+L +G+ R +++ LW YI+ LQDP+ R ++CD+ L+ +F + +
Sbjct: 297 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSE 356
Query: 206 MNKALSKHIWPLDS---DDVISVKSTPKEKQRKQERTEDLDEPTRKE 249
+ + L + P + + VISV ++K + ++D+ + +
Sbjct: 357 IPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQ 403
>UNIPROTKB|E1BJD1 [details] [associations]
symbol:SMARCD2 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 2"
species:9913 "Bos taurus" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003121 Pfam:PF02201 GO:GO:0006355 GO:GO:0006351
GO:GO:0006338 GO:GO:0016514 GO:GO:0006337 SUPFAM:SSF47592
GeneTree:ENSGT00390000017809 KO:K11650 EMBL:AAFC03085035
IPI:IPI00703184 RefSeq:NP_001192391.1 UniGene:Bt.1380
Ensembl:ENSBTAT00000028049 GeneID:789613 KEGG:bta:789613 CTD:6603
OMA:TQTRASI NextBio:20929791 Uniprot:E1BJD1
Length = 531
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 28/107 (26%), Positives = 52/107 (48%)
Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
L P+L +GV R +++ LW YI+ LQD + R I C+ R +F + +
Sbjct: 313 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSE 372
Query: 206 MNKALS---KHIWPLDSDDVISVKSTPKEKQRKQERTEDLDEPTRKE 249
+ L+ +H P+ + VISV ++K + ++D+P + +
Sbjct: 373 IPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQ 419
>UNIPROTKB|Q92925 [details] [associations]
symbol:SMARCD2 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 2"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0003713 "transcription
coactivator activity" evidence=NAS] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IDA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0006357
GO:GO:0006351 GO:GO:0006338 GO:GO:0003713 GO:GO:0016514
EMBL:CH471109 GO:GO:0006337 SUPFAM:SSF47592 EMBL:AC015651
eggNOG:COG5531 KO:K11650 HOVERGEN:HBG054046 CTD:6603 OMA:TQTRASI
EMBL:U66618 EMBL:AK300939 EMBL:AK303951 EMBL:BC018953 EMBL:BC142963
EMBL:AF113019 IPI:IPI00514042 IPI:IPI00853043 IPI:IPI00939917
RefSeq:NP_001091896.1 UniGene:Hs.250581 ProteinModelPortal:Q92925
SMR:Q92925 DIP:DIP-31182N IntAct:Q92925 MINT:MINT-1138034
STRING:Q92925 PhosphoSite:Q92925 DMDM:57013095 PaxDb:Q92925
PRIDE:Q92925 Ensembl:ENST00000323347 Ensembl:ENST00000448276
GeneID:6603 KEGG:hsa:6603 UCSC:uc010dea.1 UCSC:uc010wpt.1
GeneCards:GC17M061909 H-InvDB:HIX0014075 HGNC:HGNC:11107 MIM:601736
neXtProt:NX_Q92925 PharmGKB:PA35957 OrthoDB:EOG4WQ12P
ChiTaRS:SMARCD2 GenomeRNAi:6603 NextBio:25689 ArrayExpress:Q92925
Bgee:Q92925 CleanEx:HS_SMARCD2 Genevestigator:Q92925
GermOnline:ENSG00000108604 Uniprot:Q92925
Length = 531
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 28/107 (26%), Positives = 52/107 (48%)
Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
L P+L +GV R +++ LW YI+ LQD + R I C+ R +F + +
Sbjct: 313 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSE 372
Query: 206 MNKALS---KHIWPLDSDDVISVKSTPKEKQRKQERTEDLDEPTRKE 249
+ L+ +H P+ + VISV ++K + ++D+P + +
Sbjct: 373 IPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQ 419
>UNIPROTKB|F1RSJ9 [details] [associations]
symbol:SMARCD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0006337 "nucleosome
disassembly" evidence=IEA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0006338 GO:GO:0016514 GO:GO:0006337 SUPFAM:SSF47592
GeneTree:ENSGT00390000017809 OMA:TQTRASI EMBL:CU466386
Ensembl:ENSSSCT00000018818 Uniprot:F1RSJ9
Length = 531
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 28/107 (26%), Positives = 52/107 (48%)
Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
L P+L +GV R +++ LW YI+ LQD + R I C+ R +F + +
Sbjct: 313 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSE 372
Query: 206 MNKALS---KHIWPLDSDDVISVKSTPKEKQRKQERTEDLDEPTRKE 249
+ L+ +H P+ + VISV ++K + ++D+P + +
Sbjct: 373 IPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQ 419
>MGI|MGI:1933621 [details] [associations]
symbol:Smarcd2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 2"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016514 "SWI/SNF
complex" evidence=ISO] [GO:0016568 "chromatin modification"
evidence=IEA] InterPro:IPR003121 Pfam:PF02201 MGI:MGI:1933621
GO:GO:0006355 GO:GO:0006351 GO:GO:0006338 GO:GO:0016514
GO:GO:0006337 SUPFAM:SSF47592 EMBL:AL604045
GermOnline:ENSMUSG00000040699 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
HOVERGEN:HBG054046 CTD:6603 OMA:TQTRASI OrthoDB:EOG4WQ12P
EMBL:BC005732 IPI:IPI00115461 IPI:IPI00649685 RefSeq:NP_001123659.1
RefSeq:NP_114084.2 UniGene:Mm.21772 ProteinModelPortal:Q99JR8
SMR:Q99JR8 DIP:DIP-58950N IntAct:Q99JR8 STRING:Q99JR8
PhosphoSite:Q99JR8 PaxDb:Q99JR8 PRIDE:Q99JR8 DNASU:83796
Ensembl:ENSMUST00000021052 Ensembl:ENSMUST00000106843 GeneID:83796
KEGG:mmu:83796 InParanoid:B1ARJ6 NextBio:350778 Bgee:Q99JR8
Genevestigator:Q99JR8 Uniprot:Q99JR8
Length = 531
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 28/107 (26%), Positives = 52/107 (48%)
Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
L P+L +GV R +++ LW YI+ LQD + R I C+ R +F + +
Sbjct: 313 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSE 372
Query: 206 MNKALS---KHIWPLDSDDVISVKSTPKEKQRKQERTEDLDEPTRKE 249
+ L+ +H P+ + VISV ++K + ++D+P + +
Sbjct: 373 IPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQ 419
>RGD|69289 [details] [associations]
symbol:Smarcd2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 2"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006337 "nucleosome disassembly" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016514 "SWI/SNF complex"
evidence=IEA;ISO] InterPro:IPR003121 Pfam:PF02201 RGD:69289
GO:GO:0006355 GO:GO:0006351 GO:GO:0006338 GO:GO:0016514
GO:GO:0006337 SUPFAM:SSF47592 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
HOVERGEN:HBG054046 CTD:6603 OMA:TQTRASI OrthoDB:EOG4WQ12P
EMBL:AB003504 EMBL:AB003505 EMBL:BC062063 IPI:IPI00198069 PIR:JC6508
RefSeq:NP_114189.1 UniGene:Rn.3053 ProteinModelPortal:O54772
STRING:O54772 PhosphoSite:O54772 Ensembl:ENSRNOT00000014508
GeneID:83833 KEGG:rno:83833 InParanoid:O54772 NextBio:616469
Genevestigator:O54772 GermOnline:ENSRNOG00000010557 Uniprot:O54772
Length = 531
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 28/107 (26%), Positives = 52/107 (48%)
Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
L P+L +GV R +++ LW YI+ LQD + R I C+ R +F + +
Sbjct: 313 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSE 372
Query: 206 MNKALS---KHIWPLDSDDVISVKSTPKEKQRKQERTEDLDEPTRKE 249
+ L+ +H P+ + VISV ++K + ++D+P + +
Sbjct: 373 IPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQ 419
>TAIR|locus:2154473 [details] [associations]
symbol:AT5G23480 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IEA] [GO:0016570 "histone modification"
evidence=IEA] InterPro:IPR003121 InterPro:IPR003169
InterPro:IPR004343 Pfam:PF02201 Pfam:PF02213 Pfam:PF03126
PROSITE:PS50829 PROSITE:PS51360 GO:GO:0005634 EMBL:CP002688
GO:GO:0003677 GO:GO:0006352 GO:GO:0016570 SUPFAM:SSF55277
SUPFAM:SSF47592 IPI:IPI00544952 RefSeq:NP_568434.4 UniGene:At.31007
EnsemblPlants:AT5G23480.1 GeneID:832414 KEGG:ath:AT5G23480
OMA:EAHQSDE ArrayExpress:F4KCX4 Uniprot:F4KCX4
Length = 570
Score = 119 (46.9 bits), Expect = 0.00021, P = 0.00021
Identities = 34/136 (25%), Positives = 66/136 (48%)
Query: 119 KGPAKRRSRKLNNEVKKRGGGFSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQ 178
KG +K+R RK + ++ G G L L +++ +V + YIREK +
Sbjct: 9 KGSSKKRLRKPKS-LEFVGWGSRNLIEFLESLGRDT-TNKISENDVTAIIMNYIREKSRE 66
Query: 179 DP----NNRRNIVCDERLRALFGVDTINMFQMNKALSKHIWPLDSDDVI--SVKSTPKEK 232
P R+ + CDE+LR LFG IN+ ++ + KH +D+ + ++ +K
Sbjct: 67 TPLKSKKRRKTVACDEKLRLLFGAGKINVIKVPDLVEKHYVENQEEDLFYDDLYASEDDK 126
Query: 233 QRKQERTEDLDEPTRK 248
Q++ ++ + + T++
Sbjct: 127 QQRLSLSDKVAKQTKQ 142
>TAIR|locus:2078713 [details] [associations]
symbol:AT3G01890 "AT3G01890" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002686
GenomeReviews:BA000014_GR SUPFAM:SSF47592 eggNOG:COG5531
HOGENOM:HOG000240746 KO:K11650 ProtClustDB:CLSN2687209
EMBL:BT026139 IPI:IPI00520994 RefSeq:NP_566154.2 UniGene:At.45849
ProteinModelPortal:Q147F4 SMR:Q147F4 EnsemblPlants:AT3G01890.1
GeneID:820093 KEGG:ath:AT3G01890 TAIR:At3g01890 InParanoid:Q147F4
OMA:PAISACY PhylomeDB:Q147F4 Genevestigator:Q147F4 Uniprot:Q147F4
Length = 458
Score = 115 (45.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 19/70 (27%), Positives = 39/70 (55%)
Query: 147 SPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQM 206
SP L + +G+ R ++ +W Y++ + LQ+PN+ CD L ++FG + + +
Sbjct: 253 SPALMQVLGIEVDTRPRIIAAIWHYVKVRKLQNPNDPSFFNCDAALHSVFGEEKMKFTML 312
Query: 207 NKALSKHIWP 216
+ +S+H+ P
Sbjct: 313 SHKISQHLSP 322
Score = 41 (19.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 236 QERTEDLDEPTRKEKR--QKGGKSGFLAPLQLSDALIKFL 273
+ +T+DL + R +K G+S F + DA I++L
Sbjct: 412 ESQTKDLKLVAGEASRNAEKEGRSEFFNQPWVEDAAIRYL 451
>TAIR|locus:2080863 [details] [associations]
symbol:AT3G51120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016570 "histone
modification" evidence=IEA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=RCA] InterPro:IPR000571 InterPro:IPR001965
InterPro:IPR003121 InterPro:IPR003169 InterPro:IPR004343
InterPro:IPR018144 InterPro:IPR019787 Pfam:PF00642 Pfam:PF02201
Pfam:PF02213 Pfam:PF03126 PROSITE:PS50016 PROSITE:PS50103
PROSITE:PS50829 PROSITE:PS51360 SMART:SM00249 SMART:SM00719
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006352 GO:GO:0016570
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 eggNOG:NOG12793 InterPro:IPR019786 PROSITE:PS01359
SUPFAM:SSF55277 SUPFAM:SSF47592 EMBL:AL132980 IPI:IPI00542687
PIR:T45743 RefSeq:NP_190681.6 UniGene:At.858 HSSP:O43918
ProteinModelPortal:Q9SD34 SMR:Q9SD34 PaxDb:Q9SD34 PRIDE:Q9SD34
EnsemblPlants:AT3G51120.1 GeneID:824276 KEGG:ath:AT3G51120
TAIR:At3g51120 HOGENOM:HOG000177620 InParanoid:Q9SD34 OMA:ESEIWHY
Genevestigator:Q9SD34 Uniprot:Q9SD34
Length = 1292
Score = 122 (48.0 bits), Expect = 0.00027, P = 0.00027
Identities = 39/142 (27%), Positives = 67/142 (47%)
Query: 121 PAKRRSRKLNNEVKKRGGGFSKLCALSPQLQEFIGVTELARTEVVKQ------LWAYIRE 174
P K + +N +KK G S + +L EF+ + T V+ Q L YI++
Sbjct: 298 PNKLDGKNPSNILKKAPGDTSWA---TKELLEFVSFMKNGDTSVLSQFDVQGLLLDYIKK 354
Query: 175 KDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIWPLDSDDVISVKSTPKEKQR 234
K+L+DP + ++CD+ L LFG + F+M K L H+ L + K+T E
Sbjct: 355 KNLRDPLQKSQVLCDQMLVKLFGKQRVGHFEMLKLLESHV--LIQEKPKGAKTTNGETTH 412
Query: 235 ---KQERTEDLDEPTRKEKRQK 253
Q + + +P +++R+K
Sbjct: 413 AVPSQIEEDSVHDPMVRDRRRK 434
>MGI|MGI:1933623 [details] [associations]
symbol:Smarcd1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 1"
species:10090 "Mus musculus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=ISO]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0032947
"protein complex scaffold" evidence=ISO] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=IDA] [GO:0071565 "nBAF
complex" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
MGI:MGI:1933623 GO:GO:0007399 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0048096 GO:GO:0006337 SUPFAM:SSF47592
eggNOG:COG5531 GeneTree:ENSGT00390000017809 CTD:6602
HOGENOM:HOG000240746 KO:K11650 OrthoDB:EOG4DNF48 InterPro:IPR019835
SMART:SM00151 HOVERGEN:HBG054046 OMA:NTFYPSK ChiTaRS:SMARCD1
EMBL:M25773 EMBL:U66620 EMBL:BC026783 EMBL:BC059921 EMBL:AK075611
IPI:IPI00121270 IPI:IPI00223126 PIR:A30222 RefSeq:NP_114030.2
UniGene:Mm.273756 PDB:1UHR PDBsum:1UHR ProteinModelPortal:Q61466
SMR:Q61466 IntAct:Q61466 STRING:Q61466 PhosphoSite:Q61466
PaxDb:Q61466 PRIDE:Q61466 Ensembl:ENSMUST00000023759 GeneID:83797
KEGG:mmu:83797 UCSC:uc007xqb.1 InParanoid:Q61466
EvolutionaryTrace:Q61466 NextBio:350782 Bgee:Q61466
Genevestigator:Q61466 GermOnline:ENSMUSG00000023018 Uniprot:Q61466
Length = 515
Score = 117 (46.2 bits), Expect = 0.00031, P = 0.00031
Identities = 26/107 (24%), Positives = 54/107 (50%)
Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
L P+L +G+ R +++ LW YI+ LQDP+ R ++CD+ L+ +F + +
Sbjct: 297 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSE 356
Query: 206 MNKALSKHIWPLDS---DDVISVKSTPKEKQRKQERTEDLDEPTRKE 249
+ + L + P + + VISV ++K + ++D+ + +
Sbjct: 357 IPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQ 403
>ZFIN|ZDB-GENE-080509-2 [details] [associations]
symbol:smarcd3b "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily d, member 3b"
species:7955 "Danio rerio" [GO:0007368 "determination of left/right
symmetry" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IGI] [GO:0055007 "cardiac muscle cell differentiation"
evidence=IGI] InterPro:IPR003121 Pfam:PF02201
ZFIN:ZDB-GENE-080509-2 GO:GO:0003007 GO:GO:0055007 GO:GO:0007368
SUPFAM:SSF47592 eggNOG:COG5531 GeneTree:ENSGT00390000017809
HOGENOM:HOG000240746 KO:K11650 InterPro:IPR019835 SMART:SM00151
HOVERGEN:HBG054046 OrthoDB:EOG4QFWD6 OMA:PAISACY EMBL:BX005319
EMBL:BX322787 EMBL:EF552706 IPI:IPI00501254 RefSeq:NP_001120778.1
UniGene:Dr.28422 STRING:B2KL77 Ensembl:ENSDART00000006724
GeneID:562140 KEGG:dre:562140 CTD:562140 NextBio:20884266
Uniprot:B2KL77
Length = 476
Score = 116 (45.9 bits), Expect = 0.00036, P = 0.00036
Identities = 23/107 (21%), Positives = 55/107 (51%)
Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
L P+L +G+ R+ +++ LW Y++ LQD +++ I CD+ + +F + +
Sbjct: 258 LDPRLARLLGIHTQTRSSIIQALWQYVKTNKLQDSHDKEYINCDKYFQQIFDCPRLKFSE 317
Query: 206 MNKALSKHIWPLDS---DDVISVKSTPKEKQRKQERTEDLDEPTRKE 249
+ + L+ + P D + +ISV ++K + ++++P + +
Sbjct: 318 IPQRLTNLLLPPDPIVINHIISVDPNDQKKTACYDIDVEVEDPLKAQ 364
>WB|WBGene00044072 [details] [associations]
symbol:ham-3 species:6239 "Caenorhabditis elegans"
[GO:0040011 "locomotion" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0007413 "axonal
fasciculation" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0070603 "SWI/SNF superfamily-type complex"
evidence=ISS] [GO:0001085 "RNA polymerase II transcription factor
binding" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0006915 GO:GO:0002119 GO:GO:0010171 GO:GO:0040011
GO:GO:0006357 GO:GO:0040035 GO:GO:0007413 GO:GO:0001085
SUPFAM:SSF47592 EMBL:Z47357 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
InterPro:IPR019835 SMART:SM00151 OMA:MRFMEIP GO:GO:0070603
PIR:T27696 RefSeq:NP_499250.1 ProteinModelPortal:Q09646 SMR:Q09646
STRING:Q09646 PaxDb:Q09646 EnsemblMetazoa:ZK1128.5 GeneID:176426
KEGG:cel:CELE_ZK1128.5 UCSC:ZK1128.5 CTD:176426 WormBase:ZK1128.5
InParanoid:Q09646 NextBio:892530 Uniprot:Q09646
Length = 446
Score = 112 (44.5 bits), Expect = 0.00092, P = 0.00092
Identities = 27/98 (27%), Positives = 46/98 (46%)
Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
L P+L + +G+ R +++ LW YI+ LQDP +R I D L FGV + +
Sbjct: 227 LHPRLAKVLGIAAETRPRIIEALWQYIKTHKLQDPQDRDTINNDLFLEQCFGVSKMRFME 286
Query: 206 MNKALSKHIWPLDSDDVISVKSTPKEKQRKQERTEDLD 243
+ + L + + D + + P + Q K D+D
Sbjct: 287 IPQRLHQLLQQPDPLVLNHIIQRPDDGQDKTSACYDID 324
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.373 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 304 257 0.00086 114 3 11 22 0.49 33
32 0.48 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 37
No. of states in DFA: 583 (62 KB)
Total size of DFA: 166 KB (2098 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.59u 0.08s 25.67t Elapsed: 00:00:02
Total cpu time: 25.59u 0.08s 25.67t Elapsed: 00:00:02
Start: Sat May 11 01:33:29 2013 End: Sat May 11 01:33:31 2013