BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022018
         (304 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27 OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1
          Length = 233

 Score = 98.2 bits (243), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 57/143 (39%), Positives = 87/143 (60%), Gaps = 15/143 (10%)

Query: 117 EAKGPAKR-RSRKLNNE---VKKRG-----GGFSKLCALSPQLQEFIGVTELARTEVVKQ 167
           E K PAKR R RK + E    +KR         +K   LSP+L EF+G+ +L+R + VK+
Sbjct: 85  EGKKPAKRTRKRKEDGEEGGKRKRNQDPANNPLNKPMKLSPKLAEFLGLEQLSRPQTVKK 144

Query: 168 LWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIWPLDSDDVISVKS 227
           LW YI+  DLQDPN++R I+CD++L+++F VDT++MF MNK L+  +  +  D +     
Sbjct: 145 LWEYIKAHDLQDPNDKRTILCDDKLKSVFEVDTLHMFTMNKYLTNLMTKIPDDQL----- 199

Query: 228 TPKEKQRKQERTEDLDEPTRKEK 250
            PK + + +E     D P ++EK
Sbjct: 200 -PKPQPKNEEPAAPNDLPKQEEK 221



 Score = 42.0 bits (97), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 230 KEKQRKQERTEDLDEPTRKEKRQKGGKSGFLAPLQLSDALIKFLGTGESALPRSDVIKRM 289
           K  +R ++R ED +E  ++++ Q    +    P++LS  L +FLG  +  L R   +K++
Sbjct: 88  KPAKRTRKRKEDGEEGGKRKRNQDPANNPLNKPMKLSPKLAEFLGLEQ--LSRPQTVKKL 145

Query: 290 WDYIKEKNLQ 299
           W+YIK  +LQ
Sbjct: 146 WEYIKAHDLQ 155


>sp|Q08747|UAF30_YEAST Upstream activation factor subunit UAF30 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1
           SV=1
          Length = 228

 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 103/212 (48%), Gaps = 43/212 (20%)

Query: 14  FLKNSDLNTTTTGIVRRQLEKDFGVDLTD--KKI--FIREQVDLFLQ-SQFENDQNDGGN 68
            L + DL T TT  VR  L++ + +D+    K I   IR+ +DL  +  +FE    D   
Sbjct: 14  LLSDMDLETVTTKKVRMALKEVYAIDVESQGKAINKLIRKHLDLVKERPRFERSLEDLLK 73

Query: 69  EEQQEEDDGEDDQMAKVKSDETDGSDDAAVEEGDDDNNDENDNDDEANEAKGPAKRRSRK 128
           E         +  +A   + E   S  ++ EE +D            +E KG        
Sbjct: 74  E---------NATLAIELTKEITVSKRSSGEEKND------------SETKG-------- 104

Query: 129 LNNEVKKRGGGFSKL------CALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNN 182
               V+K+ G  SK         LS  L   +G  EL RTEVV++LWAYI+  +LQ+PNN
Sbjct: 105 --THVEKKKGTVSKSPISTRKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNN 162

Query: 183 RRNIVCDERLRALFGVDTINMFQMNKALSKHI 214
           ++ I+CDE+L  + G  T NMF+M+K L+ H+
Sbjct: 163 KKEILCDEKLELILGKST-NMFEMHKILASHM 193



 Score = 37.7 bits (86), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 263 LQLSDALIKFLGTGESALPRSDVIKRMWDYIKEKNLQ 299
           + LS +L   LG  E  L R++V++R+W YIK  NLQ
Sbjct: 124 VTLSKSLASLLG--EHELTRTEVVRRLWAYIKAHNLQ 158


>sp|Q05024|TRI1_YEAST Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
           S288c) GN=TRI1 PE=1 SV=1
          Length = 226

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 65/98 (66%), Gaps = 3/98 (3%)

Query: 144 CALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINM 203
             LS  LQ+F+G  EL RT+VVK +W YI+E DLQ+P +RR I+CDE++  +FG   + M
Sbjct: 124 VLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFG-KKMTM 182

Query: 204 FQMNKALSKHIWPLDSDDVISVKSTPKEKQRKQERTED 241
           F MNK L+KH++  + D+++  +   K+   K+ + E+
Sbjct: 183 FSMNKLLTKHLF--NPDEIVKHEEEQKQTPEKEIKLEN 218



 Score = 41.2 bits (95), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/35 (57%), Positives = 25/35 (71%), Gaps = 2/35 (5%)

Query: 265 LSDALIKFLGTGESALPRSDVIKRMWDYIKEKNLQ 299
           LS  L KFLG+ E  LPR+ V+K +W YIKE +LQ
Sbjct: 126 LSAPLQKFLGSEE--LPRTQVVKMIWQYIKEHDLQ 158


>sp|Q2TBN1|SMRD1_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1
           PE=2 SV=1
          Length = 515

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
           L P+L   +G+    R  +++ LW YI+   LQDP+ R  ++CD+ L+ +F    +   +
Sbjct: 297 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSE 356

Query: 206 MNKALSKHIWPLDS---DDVISV 225
           + + L   + P +    + VISV
Sbjct: 357 IPQRLHALLMPPEPIIINHVISV 379


>sp|Q96GM5|SMRD1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily D member 1 OS=Homo sapiens
           GN=SMARCD1 PE=1 SV=2
          Length = 515

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
           L P+L   +G+    R  +++ LW YI+   LQDP+ R  ++CD+ L+ +F    +   +
Sbjct: 297 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSE 356

Query: 206 MNKALSKHIWPLDS---DDVISV 225
           + + L   + P +    + VISV
Sbjct: 357 IPQRLHALLMPPEPIIINHVISV 379


>sp|Q61466|SMRD1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily D member 1 OS=Mus musculus
           GN=Smarcd1 PE=1 SV=3
          Length = 515

 Score = 51.6 bits (122), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
           L P+L   +G+    R  +++ LW YI+   LQDP+ R  ++CD+ L+ +F    +   +
Sbjct: 297 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSE 356

Query: 206 MNKALSKHIWPLDS---DDVISV 225
           + + L   + P +    + VISV
Sbjct: 357 IPQRLHALLMPPEPIIINHVISV 379


>sp|Q9P7S3|SSR3_SCHPO SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=ssr3 PE=1 SV=1
          Length = 425

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 3/124 (2%)

Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
           LS      +G+ E  R ++V  LW YI+   LQD   +R I CD+ LR LF  D +   +
Sbjct: 208 LSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFEADRLYFPR 267

Query: 206 MNKALSKHIWPLDSDDVISVKSTPKEKQRKQERTEDLDEPTRKEKRQKGGKSGFLAPLQL 265
           + + +++ + P+D    I +  T    +   E+    D     E  +      FLA +  
Sbjct: 268 IPELMNRFLEPIDP---IVIPYTINVSEHTVEKVTIFDIRINTEDPRHSQIRSFLATMMS 324

Query: 266 SDAL 269
            D +
Sbjct: 325 QDKI 328


>sp|Q92925|SMRD2_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily D member 2 OS=Homo sapiens
           GN=SMARCD2 PE=1 SV=3
          Length = 531

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 9/119 (7%)

Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
           L P+L   +GV    R  +++ LW YI+   LQD + R  I C+   R +F    +   +
Sbjct: 313 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSE 372

Query: 206 MNKALS---KHIWPLDSDDVISVKSTPKEKQRKQERTEDLDEPTRKEKRQKGGKSGFLA 261
           +   L+   +H  P+  + VISV    ++K    +   ++D+P       K   S FLA
Sbjct: 373 IPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPL------KAQMSNFLA 425


>sp|E1BJD1|SMRD2_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily D member 2 OS=Bos taurus GN=SMARCD2
           PE=3 SV=1
          Length = 531

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 9/119 (7%)

Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
           L P+L   +GV    R  +++ LW YI+   LQD + R  I C+   R +F    +   +
Sbjct: 313 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSE 372

Query: 206 MNKALS---KHIWPLDSDDVISVKSTPKEKQRKQERTEDLDEPTRKEKRQKGGKSGFLA 261
           +   L+   +H  P+  + VISV    ++K    +   ++D+P       K   S FLA
Sbjct: 373 IPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPL------KAQMSNFLA 425


>sp|O54772|SMRD2_RAT SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily D member 2 OS=Rattus norvegicus
           GN=Smarcd2 PE=2 SV=3
          Length = 531

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 9/119 (7%)

Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
           L P+L   +GV    R  +++ LW YI+   LQD + R  I C+   R +F    +   +
Sbjct: 313 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSE 372

Query: 206 MNKALS---KHIWPLDSDDVISVKSTPKEKQRKQERTEDLDEPTRKEKRQKGGKSGFLA 261
           +   L+   +H  P+  + VISV    ++K    +   ++D+P + +       S FLA
Sbjct: 373 IPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQ------MSNFLA 425


>sp|Q99JR8|SMRD2_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily D member 2 OS=Mus musculus
           GN=Smarcd2 PE=2 SV=2
          Length = 531

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
           L P+L   +GV    R  +++ LW YI+   LQD + R  I C+   R +F    +   +
Sbjct: 313 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSE 372

Query: 206 MNKALS---KHIWPLDSDDVISV 225
           +   L+   +H  P+  + VISV
Sbjct: 373 IPMKLAGLLQHPDPIVINHVISV 395


>sp|Q9FMT4|SNF12_ARATH SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana
           GN=At5g14170 PE=1 SV=1
          Length = 534

 Score = 48.5 bits (114), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 39/71 (54%)

Query: 146 LSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQ 205
           LS  L + +G+    R  ++  +W Y++ + LQ+PN+     CD  L+ +FG + +    
Sbjct: 321 LSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTM 380

Query: 206 MNKALSKHIWP 216
           +++ +S H+ P
Sbjct: 381 VSQKISHHLSP 391


>sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis
           thaliana GN=NERD PE=1 SV=3
          Length = 1773

 Score = 48.1 bits (113), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%)

Query: 159 LARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHI 214
           L   EV   L AYI+  +L+DP  +  ++CD RL+ LFG   +  F+M   L  H 
Sbjct: 827 LPMLEVQTLLLAYIKRYNLRDPRRKSQVICDSRLQNLFGKSHVGHFEMLNLLDSHF 882


>sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430 OS=Arabidopsis thaliana
           GN=At5g08430 PE=1 SV=2
          Length = 553

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 159 LARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKH 213
           ++R +V   +  YI ++ L DP+N++ +VCD+RL  LFG  TI   ++   L KH
Sbjct: 52  ISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKH 106


>sp|Q9SD34|C3H44_ARATH Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis
           thaliana GN=At3g51120 PE=2 SV=3
          Length = 1292

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 149 QLQEFIGVTELARTEVVKQ------LWAYIREKDLQDPNNRRNIVCDERLRALFGVDTIN 202
           +L EF+   +   T V+ Q      L  YI++K+L+DP  +  ++CD+ L  LFG   + 
Sbjct: 323 ELLEFVSFMKNGDTSVLSQFDVQGLLLDYIKKKNLRDPLQKSQVLCDQMLVKLFGKQRVG 382

Query: 203 MFQMNKALSKHI 214
            F+M K L  H+
Sbjct: 383 HFEMLKLLESHV 394


>sp|Q6P9Z1|SMRD3_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily D member 3 OS=Mus musculus
           GN=Smarcd3 PE=1 SV=2
          Length = 483

 Score = 44.7 bits (104), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 22/142 (15%)

Query: 135 KRGGGFSKLCAL-------------SPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPN 181
           KR G  S  C L              P+L   +G+   +R+ +V+ LW Y++   LQD +
Sbjct: 241 KRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSH 300

Query: 182 NRRNIVCDERLRALFGVDTINMFQMNKALSKHIWPLDS---DDVISVKSTPKEKQRKQER 238
           ++  I  D+  + +F    +   ++ + L+  + P D    + VISV  + ++K    + 
Sbjct: 301 DKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDI 360

Query: 239 TEDLDEPTRKEKRQKGGKSGFL 260
             +++EP       KG  S FL
Sbjct: 361 DVEVEEPL------KGQMSSFL 376


>sp|Q6STE5|SMRD3_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily D member 3 OS=Homo sapiens
           GN=SMARCD3 PE=1 SV=1
          Length = 483

 Score = 44.7 bits (104), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 22/142 (15%)

Query: 135 KRGGGFSKLCAL-------------SPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPN 181
           KR G  S  C L              P+L   +G+   +R+ +V+ LW Y++   LQD +
Sbjct: 241 KRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSH 300

Query: 182 NRRNIVCDERLRALFGVDTINMFQMNKALSKHIWPLDS---DDVISVKSTPKEKQRKQER 238
           ++  I  D+  + +F    +   ++ + L+  + P D    + VISV  + ++K    + 
Sbjct: 301 DKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDI 360

Query: 239 TEDLDEPTRKEKRQKGGKSGFL 260
             +++EP       KG  S FL
Sbjct: 361 DVEVEEPL------KGQMSSFL 376


>sp|Q196Z0|VF306_IIV3 Putative SWIB domain-containing protein 070L OS=Invertebrate
           iridescent virus 3 GN=IIV3-070L PE=3 SV=1
          Length = 282

 Score = 44.3 bits (103), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 18/113 (15%)

Query: 124 RRSRKLNNEVKKRGGGFSKLCALSPQLQEF----IGVTELARTEVVKQLWAYIREKDLQD 179
           +R+R+ +N       G  K   +S  +  F     G TE +R +V K L AYI++ DL+D
Sbjct: 88  KRTRESHN------TGLEKPRMISEAMATFADWEYGKTEKSRYDVTKYLCAYIKDNDLRD 141

Query: 180 PNNRRNIVCDERLRALFGVD---TINMFQMNKALSKHIWPLDSDDVISVKSTP 229
            +N+  I+ D +L+ L  VD    +    M K L KH +    D+V++   +P
Sbjct: 142 ASNKTIILPDAKLKKLLQVDDSVVLKYPTMQKYL-KHCF----DEVVARAPSP 189


>sp|Q556Z0|SNF12_DICDI SWI/SNF complex component SNF12 homolog OS=Dictyostelium discoideum
           GN=snf12-1 PE=3 SV=1
          Length = 456

 Score = 41.6 bits (96), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 150 LQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKA 209
           L + + +    +  ++  LW YI+   L D   ++ I CDE L+ +F ++ +   Q+ + 
Sbjct: 245 LSQLLNIHTDTKPRIILALWHYIKSNTLLDAETKK-ITCDENLKNIFSLEELQFNQIPQL 303

Query: 210 LSKHIWPLD 218
           L +H+ P D
Sbjct: 304 LREHLSPPD 312


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.131    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,623,214
Number of Sequences: 539616
Number of extensions: 5553164
Number of successful extensions: 78701
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 1125
Number of HSP's that attempted gapping in prelim test: 41110
Number of HSP's gapped (non-prelim): 21881
length of query: 304
length of database: 191,569,459
effective HSP length: 117
effective length of query: 187
effective length of database: 128,434,387
effective search space: 24017230369
effective search space used: 24017230369
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)