Query 022018
Match_columns 304
No_of_seqs 292 out of 853
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 12:45:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v31_A Hypothetical protein RA 100.0 1.6E-30 5.4E-35 206.8 6.7 87 137-223 5-91 (93)
2 1uhr_A SWI/SNF related, matrix 100.0 8.9E-30 3.1E-34 202.5 4.4 84 140-223 8-91 (93)
3 1v32_A AT5G08430, hypothetical 99.9 1.5E-26 5.1E-31 186.4 7.1 73 145-217 15-93 (101)
4 1q1v_A DEK protein; winged-hel 99.7 1.3E-17 4.6E-22 125.8 6.9 57 1-57 11-68 (70)
5 1v31_A Hypothetical protein RA 99.5 7.7E-15 2.6E-19 116.3 4.8 47 256-304 5-51 (93)
6 1uhr_A SWI/SNF related, matrix 99.4 5.8E-14 2E-18 111.3 2.1 43 260-304 9-51 (93)
7 1v32_A AT5G08430, hypothetical 99.3 1.2E-12 4.2E-17 105.2 6.7 44 261-304 12-59 (101)
8 3dac_M MDM4 protein; MDMX, MDM 96.9 0.00081 2.8E-08 55.5 4.8 76 144-219 25-109 (130)
9 3fea_A MDM4 protein; HDMX, HDM 96.5 0.0017 5.8E-08 51.6 3.6 74 144-217 16-98 (100)
10 1z1m_A Ubiquitin-protein ligas 96.5 0.0047 1.6E-07 50.4 6.2 74 144-217 28-107 (119)
11 2z5s_M MDM4 protein, zebrafish 96.3 0.0056 1.9E-07 50.9 5.6 76 143-218 23-107 (140)
12 1ycq_A MDM2, MDM2; anti-oncoge 96.2 0.0064 2.2E-07 48.7 5.4 72 144-215 12-92 (107)
13 2axi_A Ubiquitin-protein ligas 95.8 0.0052 1.8E-07 49.8 3.0 71 144-214 12-88 (115)
14 2kwl_A ACP, acyl carrier prote 73.2 3 0.0001 30.2 3.5 58 155-215 1-58 (84)
15 2jq4_A AGR_C_4658P, hypothetic 54.1 13 0.00043 28.7 4.0 44 2-45 18-80 (105)
16 2cg5_B Fatty acid synthase; tr 53.3 8.3 0.00028 29.5 2.7 40 5-44 9-62 (91)
17 2lol_A ACP, acyl carrier prote 52.3 21 0.00073 25.2 4.7 43 1-43 1-61 (81)
18 3ce7_A Specific mitochodrial a 51.4 18 0.00062 28.0 4.5 41 3-43 16-78 (107)
19 2ava_A ACP I, acyl carrier pro 47.9 33 0.0011 24.2 5.2 24 20-43 36-59 (82)
20 1f80_D Acyl carrier protein; t 44.8 14 0.00047 26.2 2.6 55 158-215 2-56 (81)
21 2dnw_A Acyl carrier protein; A 40.2 18 0.00062 27.1 2.8 60 153-215 5-64 (99)
22 2keb_A DNA polymerase subunit 39.2 38 0.0013 26.6 4.5 42 13-57 16-57 (101)
23 2lol_A ACP, acyl carrier prote 39.1 28 0.00096 24.5 3.6 54 159-215 2-55 (81)
24 2cnr_A FAS, ACP, acyl carrier 38.0 31 0.0011 24.2 3.7 54 159-215 3-56 (82)
25 2kjs_A Putative acyl carrier p 37.9 47 0.0016 24.7 4.8 54 1-54 1-72 (87)
26 1nq4_A Oxytetracycline polyket 36.9 50 0.0017 24.5 4.9 42 3-44 5-63 (95)
27 2cgq_A Acyl carrier protein AC 36.8 30 0.001 27.2 3.7 40 4-43 28-80 (113)
28 1dd4_C 50S ribosomal protein L 34.8 30 0.001 22.7 2.7 21 20-40 13-33 (40)
29 2l4b_A Acyl carrier protein; i 33.3 46 0.0016 24.0 4.0 23 21-43 44-66 (88)
30 1dv5_A APO-DCP, APO-D-alanyl c 30.2 30 0.001 24.8 2.5 53 160-215 1-53 (80)
31 2ahq_A Sigma-54, RNA polymeras 29.9 68 0.0023 23.7 4.4 41 2-43 16-57 (76)
32 1x3o_A Acyl carrier protein; s 29.1 26 0.00091 24.4 2.0 54 159-215 1-54 (80)
33 2do1_A Nuclear protein HCC-1; 29.0 1.1E+02 0.0038 21.2 5.1 40 17-57 7-46 (55)
34 1vku_A Acyl carrier protein; T 28.5 39 0.0013 25.7 3.0 55 157-215 11-65 (100)
35 2ava_A ACP I, acyl carrier pro 27.1 50 0.0017 23.2 3.2 53 160-215 1-53 (82)
36 2ehs_A ACP, acyl carrier prote 25.8 83 0.0028 21.4 4.1 23 21-43 34-56 (77)
37 1l0i_A Acyl carrier protein; a 25.7 83 0.0028 21.7 4.2 22 22-43 37-58 (78)
38 1af8_A Actinorhodin polyketide 24.4 50 0.0017 23.5 2.8 54 161-215 3-57 (86)
39 1jjr_A KU70, thyroid autoantig 24.4 1.1E+02 0.0037 25.6 5.2 45 10-55 51-95 (151)
40 1klp_A ACP, ACPM, meromycolate 23.1 54 0.0018 25.2 2.9 55 158-215 2-56 (115)
41 2iie_A Integration HOST factor 22.4 2.2E+02 0.0077 24.4 7.1 50 6-55 30-79 (204)
42 3nrk_A LIC12922; NC domain, pa 22.0 1.2E+02 0.0041 27.5 5.5 48 2-51 78-125 (325)
43 2k6m_S Supervillin; SVHP, HP, 21.5 20 0.00068 26.2 0.0 32 178-209 24-55 (67)
44 2cgq_A Acyl carrier protein AC 20.3 38 0.0013 26.7 1.4 51 156-215 24-74 (113)
No 1
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.96 E-value=1.6e-30 Score=206.81 Aligned_cols=87 Identities=23% Similarity=0.547 Sum_probs=83.5
Q ss_pred CCCCCccccCCHHHHhhhCCCCccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCCC
Q 022018 137 GGGFSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIWP 216 (304)
Q Consensus 137 ~~g~~k~~~LS~~La~~lG~~~~sR~evvk~lW~YIK~~nLqdP~~kr~I~cD~~Lk~lfg~~~i~~f~m~k~L~~hl~p 216 (304)
..+++.+|.||++||+|||..++||++||++||+|||.||||||.||+.|+||++|+.|||+++|.||+|+++|++||.|
T Consensus 5 ~~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl~p 84 (93)
T 1v31_A 5 SSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSP 84 (93)
T ss_dssp CCSSCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHCBC
T ss_pred CCCCCCccccCHHHHHHHCCCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhcCC
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccc
Q 022018 217 LDSDDVI 223 (304)
Q Consensus 217 l~p~~~~ 223 (304)
++|+...
T Consensus 85 ~~Pi~~~ 91 (93)
T 1v31_A 85 PPPSGPS 91 (93)
T ss_dssp CCCSSCC
T ss_pred CCCeeCC
Confidence 9998764
No 2
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.95 E-value=8.9e-30 Score=202.51 Aligned_cols=84 Identities=24% Similarity=0.563 Sum_probs=80.9
Q ss_pred CCccccCCHHHHhhhCCCCccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCCCCCC
Q 022018 140 FSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIWPLDS 219 (304)
Q Consensus 140 ~~k~~~LS~~La~~lG~~~~sR~evvk~lW~YIK~~nLqdP~~kr~I~cD~~Lk~lfg~~~i~~f~m~k~L~~hl~pl~p 219 (304)
.+.+|+||++||+|||..++||++||++||+|||.||||||.||+.|+||++|+.|||+++|.||+|+++|++||.|++|
T Consensus 8 ~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~p~~P 87 (93)
T 1uhr_A 8 QPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPPEP 87 (93)
T ss_dssp SCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEECSSC
T ss_pred CCCccCcCHHHHHHHCCCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcCCCCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 022018 220 DDVI 223 (304)
Q Consensus 220 ~~~~ 223 (304)
+...
T Consensus 88 I~i~ 91 (93)
T 1uhr_A 88 SGPS 91 (93)
T ss_dssp CCSS
T ss_pred eeCC
Confidence 9764
No 3
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.93 E-value=1.5e-26 Score=186.41 Aligned_cols=73 Identities=37% Similarity=0.557 Sum_probs=69.9
Q ss_pred cCCHHHHhhh---CC---CCccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCCCC
Q 022018 145 ALSPQLQEFI---GV---TELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIWPL 217 (304)
Q Consensus 145 ~LS~~La~~l---G~---~~~sR~evvk~lW~YIK~~nLqdP~~kr~I~cD~~Lk~lfg~~~i~~f~m~k~L~~hl~pl 217 (304)
.+|++||+|| |. .++||++||++||+|||+||||||.||+.|+||++|+.|||+++|.||+|+++|++||.+.
T Consensus 15 w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~klL~~Hl~~~ 93 (101)
T 1v32_A 15 WGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKEN 93 (101)
T ss_dssp SSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHHSCSC
T ss_pred cCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHHHHHHHHHcCcc
Confidence 5899999999 98 5799999999999999999999999999999999999999999999999999999999753
No 4
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=99.71 E-value=1.3e-17 Score=125.82 Aligned_cols=57 Identities=23% Similarity=0.414 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCccHHHHHHHHHHHh-CCCCchhhHHHHHHHHHHHhh
Q 022018 1 MVSDSELIARLQEFLKNSDLNTTTTGIVRRQLEKDF-GVDLTDKKIFIREQVDLFLQS 57 (304)
Q Consensus 1 m~sd~ei~~~I~~IL~~aDl~~vT~k~VR~~Le~~f-gvDLs~kK~~I~~~I~~~l~~ 57 (304)
+|||++|...|++||++|||++||.|+||++|+++| |+||++||+||+++|+.+|+.
T Consensus 11 ~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs~kK~~I~~~I~~~L~~ 68 (70)
T 1q1v_A 11 PPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDFIKTTVKELISL 68 (70)
T ss_dssp CCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCSHHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHhc
Confidence 699999999999999999999999999999999999 999999999999999999964
No 5
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.51 E-value=7.7e-15 Score=116.33 Aligned_cols=47 Identities=32% Similarity=0.557 Sum_probs=43.6
Q ss_pred CCCCCCCCCCcHHHHHhhCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCC
Q 022018 256 KSGFLAPLQLSDALIKFLGTGESALPRSDVIKRMWDYIKEKNLQVSLRK 304 (304)
Q Consensus 256 ~~g~~~~~~lS~~L~~~~g~~~~~~~r~~v~k~~W~YIk~~~Lqdp~nk 304 (304)
...+...|.+|++||+|+|.. ++||++||++||+|||.|+||||.||
T Consensus 5 ~~~~p~~~~lS~~La~~lG~~--~~sr~evvk~lW~YIK~n~Lqdp~~k 51 (93)
T 1v31_A 5 SSGVPEKFKLSTALMDVLGIE--VETRPRIIAAIWHYVKARKLQNPNDP 51 (93)
T ss_dssp CCSSCCCEECCHHHHHHSCCS--EECSHHHHHHHHHHHHHTTCBCSSCS
T ss_pred CCCCCCccccCHHHHHHHCCC--ccCHHHHHHHHHHHHHHccCcCcccC
Confidence 345678999999999999987 99999999999999999999999986
No 6
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.40 E-value=5.8e-14 Score=111.30 Aligned_cols=43 Identities=28% Similarity=0.543 Sum_probs=40.3
Q ss_pred CCCCCCcHHHHHhhCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCC
Q 022018 260 LAPLQLSDALIKFLGTGESALPRSDVIKRMWDYIKEKNLQVSLRK 304 (304)
Q Consensus 260 ~~~~~lS~~L~~~~g~~~~~~~r~~v~k~~W~YIk~~~Lqdp~nk 304 (304)
...|.+|++||+|+|.. ++||++||++||+|||.||||||.||
T Consensus 9 p~~~~lS~~La~~lG~~--~~sr~evvk~lW~YIK~n~Lqdp~~k 51 (93)
T 1uhr_A 9 PPQFKLDPRLARLLGIH--TQTRPVIIQALWQYIKTHKLQDPHER 51 (93)
T ss_dssp CCEEEECTTHHHHTCCS--EEEHHHHHHHHHHHHHHTTCBCSSCS
T ss_pred CCccCcCHHHHHHHCCC--ccCHHHHHHHHHHHHHhccCCCcccc
Confidence 35789999999999987 99999999999999999999999987
No 7
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.34 E-value=1.2e-12 Score=105.16 Aligned_cols=44 Identities=30% Similarity=0.308 Sum_probs=39.0
Q ss_pred CCCCCcHHHHHhh---CCCC-CCcCHHHHHHHHHHHHHhcCCCCCCCC
Q 022018 261 APLQLSDALIKFL---GTGE-SALPRSDVIKRMWDYIKEKNLQVSLRK 304 (304)
Q Consensus 261 ~~~~lS~~L~~~~---g~~~-~~~~r~~v~k~~W~YIk~~~Lqdp~nk 304 (304)
..--+|++||+|| |.+. .++||++||++||+|||+||||||.||
T Consensus 12 ~~~w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~K 59 (101)
T 1v32_A 12 FVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNK 59 (101)
T ss_dssp SSSSSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCT
T ss_pred ecccCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccC
Confidence 4457999999999 8742 479999999999999999999999997
No 8
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=96.95 E-value=0.00081 Score=55.53 Aligned_cols=76 Identities=21% Similarity=0.351 Sum_probs=65.2
Q ss_pred ccCCHHHHhhh---CC--CCccHHHHHHHHHHHHhhhCCCCCCCCCccccc-hhHHhhhCCCccChhh---HHHHHHccC
Q 022018 144 CALSPQLQEFI---GV--TELARTEVVKQLWAYIREKDLQDPNNRRNIVCD-ERLRALFGVDTINMFQ---MNKALSKHI 214 (304)
Q Consensus 144 ~~LS~~La~~l---G~--~~~sR~evvk~lW~YIK~~nLqdP~~kr~I~cD-~~Lk~lfg~~~i~~f~---m~k~L~~hl 214 (304)
++--++|-.|| |. +..|..+|+--+=+||-.+.|+||.+..+|.|- +.|-.|||+++|++-+ +...|.++|
T Consensus 25 Vrpk~~lL~iLq~aGA~~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llGv~sFSVkdp~~L~~mL~~NL 104 (130)
T 3dac_M 25 VHPRAPLLQILKVAGAQEEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPLYEMLKRNL 104 (130)
T ss_dssp EEECHHHHHHHHHTTCCCSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTSCHHHHHHHHHHE
T ss_pred cCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccCCcceeecCcHHHHHHHHhhe
Confidence 44456677776 54 578999999999999999999999999999996 7899999999999998 999999999
Q ss_pred CCCCC
Q 022018 215 WPLDS 219 (304)
Q Consensus 215 ~pl~p 219 (304)
.++..
T Consensus 105 v~~~~ 109 (130)
T 3dac_M 105 VILNN 109 (130)
T ss_dssp EEC--
T ss_pred ecccC
Confidence 87764
No 9
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=96.52 E-value=0.0017 Score=51.57 Aligned_cols=74 Identities=23% Similarity=0.358 Sum_probs=62.2
Q ss_pred ccCCHHHHhhh---CC--CCccHHHHHHHHHHHHhhhCCCCCCCCCccccc-hhHHhhhCCCccChh---hHHHHHHccC
Q 022018 144 CALSPQLQEFI---GV--TELARTEVVKQLWAYIREKDLQDPNNRRNIVCD-ERLRALFGVDTINMF---QMNKALSKHI 214 (304)
Q Consensus 144 ~~LS~~La~~l---G~--~~~sR~evvk~lW~YIK~~nLqdP~~kr~I~cD-~~Lk~lfg~~~i~~f---~m~k~L~~hl 214 (304)
++--++|-.+| |. +..|..+|+.-+=+||-.+.|+||.+...|.|- +.|-.|||+++|.+- -+...|.+||
T Consensus 16 Vrpk~~lL~iLq~aGA~~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G~~sFsvkdp~~l~~ml~~nL 95 (100)
T 3fea_A 16 VRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNL 95 (100)
T ss_dssp BEECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHTCSEEETTCCHHHHHHHHHHE
T ss_pred cCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccCCcceeecCchHHHHHHHhhc
Confidence 34456677666 54 579999999999999999999999999999996 788999999999987 7888898888
Q ss_pred CCC
Q 022018 215 WPL 217 (304)
Q Consensus 215 ~pl 217 (304)
..+
T Consensus 96 v~~ 98 (100)
T 3fea_A 96 VTL 98 (100)
T ss_dssp EC-
T ss_pred eec
Confidence 654
No 10
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=96.51 E-value=0.0047 Score=50.36 Aligned_cols=74 Identities=26% Similarity=0.371 Sum_probs=59.1
Q ss_pred ccCCHHHHhhh---CC--CCccHHHHHHHHHHHHhhhCCCCCCCCCccccc-hhHHhhhCCCccChhhHHHHHHccCCCC
Q 022018 144 CALSPQLQEFI---GV--TELARTEVVKQLWAYIREKDLQDPNNRRNIVCD-ERLRALFGVDTINMFQMNKALSKHIWPL 217 (304)
Q Consensus 144 ~~LS~~La~~l---G~--~~~sR~evvk~lW~YIK~~nLqdP~~kr~I~cD-~~Lk~lfg~~~i~~f~m~k~L~~hl~pl 217 (304)
++-.+.|-.|| |. ...|+.+|+.-|=+||-.+.|+||.+..+|.|. +.|-.|||+..|.+-+-..+...|...+
T Consensus 28 VrPk~~LLkiLq~aGA~~~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~nL 107 (119)
T 1z1m_A 28 VRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNL 107 (119)
T ss_dssp CCCSTTSHHHHHHHTCCCSCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSCCSCEETTCHHHHHHHHSCSC
T ss_pred ccccHHHHHHHHHhccccceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHhc
Confidence 34444555555 54 578999999999999999999999999999997 7779999999999887766665555443
No 11
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=96.29 E-value=0.0056 Score=50.87 Aligned_cols=76 Identities=21% Similarity=0.327 Sum_probs=63.3
Q ss_pred cccCCHHHHhhh---CC--CCccHHHHHHHHHHHHhhhCCCCCCCCCccccc-hhHHhhhCCCccChhhHH---HHHHcc
Q 022018 143 LCALSPQLQEFI---GV--TELARTEVVKQLWAYIREKDLQDPNNRRNIVCD-ERLRALFGVDTINMFQMN---KALSKH 213 (304)
Q Consensus 143 ~~~LS~~La~~l---G~--~~~sR~evvk~lW~YIK~~nLqdP~~kr~I~cD-~~Lk~lfg~~~i~~f~m~---k~L~~h 213 (304)
.++--+.|-.|| |. ...|+.+|+--|=+||-...|+||.+..+|.|. +.|-.|||+..|++-+.. +.|.+.
T Consensus 23 ~VrPk~~LLkiLq~aGA~~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~Gv~sFSVKdp~~ly~ML~~N 102 (140)
T 2z5s_M 23 QVHPRAPLLQILKVAGAQEEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPVYEMLKRN 102 (140)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTBCHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHhCcccceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 456677888887 54 579999999999999999999999999999997 777999999999987654 667777
Q ss_pred CCCCC
Q 022018 214 IWPLD 218 (304)
Q Consensus 214 l~pl~ 218 (304)
+.+..
T Consensus 103 Lv~~~ 107 (140)
T 2z5s_M 103 LVILN 107 (140)
T ss_dssp EECC-
T ss_pred ccccc
Confidence 76554
No 12
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=96.23 E-value=0.0064 Score=48.73 Aligned_cols=72 Identities=25% Similarity=0.454 Sum_probs=58.8
Q ss_pred ccCCHHHHhhh---CC--CCccHHHHHHHHHHHHhhhCCCCCCCCCccccc-hhHHhhhCCCccChhhHH---HHHHccC
Q 022018 144 CALSPQLQEFI---GV--TELARTEVVKQLWAYIREKDLQDPNNRRNIVCD-ERLRALFGVDTINMFQMN---KALSKHI 214 (304)
Q Consensus 144 ~~LS~~La~~l---G~--~~~sR~evvk~lW~YIK~~nLqdP~~kr~I~cD-~~Lk~lfg~~~i~~f~m~---k~L~~hl 214 (304)
++-.+.|-.+| |. ...|+.+|+.-|=+||-...|+||.+..+|.|. +.|-.|||+..|++-+.. +.|.+.+
T Consensus 12 VrPk~~LLklL~~~GA~~~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~nL 91 (107)
T 1ycq_A 12 VQPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEPRRLYAMISRNL 91 (107)
T ss_dssp BEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTCSEEETTCHHHHHHHHHTTE
T ss_pred cCccHHHHHHHHHhccccceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHhc
Confidence 44456666666 53 578999999999999999999999999999997 777999999999988776 4455554
Q ss_pred C
Q 022018 215 W 215 (304)
Q Consensus 215 ~ 215 (304)
.
T Consensus 92 v 92 (107)
T 1ycq_A 92 V 92 (107)
T ss_dssp E
T ss_pred c
Confidence 3
No 13
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=95.76 E-value=0.0052 Score=49.76 Aligned_cols=71 Identities=25% Similarity=0.379 Sum_probs=57.8
Q ss_pred ccCCHHHHhhh---CC--CCccHHHHHHHHHHHHhhhCCCCCCCCCccccc-hhHHhhhCCCccChhhHHHHHHccC
Q 022018 144 CALSPQLQEFI---GV--TELARTEVVKQLWAYIREKDLQDPNNRRNIVCD-ERLRALFGVDTINMFQMNKALSKHI 214 (304)
Q Consensus 144 ~~LS~~La~~l---G~--~~~sR~evvk~lW~YIK~~nLqdP~~kr~I~cD-~~Lk~lfg~~~i~~f~m~k~L~~hl 214 (304)
++-.+.|-.|| |. ...|+.+|+--+=+||-...|+||.+..+|.|. +.|-.|||+..|++-+-..+...+.
T Consensus 12 VrPk~~LLklLq~~GA~~~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~ 88 (115)
T 2axi_A 12 VRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIY 88 (115)
T ss_dssp EEECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEETTCHHHHHHHHH
T ss_pred cCccHHHHHHHHHhccccceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHH
Confidence 44456666666 53 578999999999999999999999999999997 7779999999999887655544443
No 14
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=73.20 E-value=3 Score=30.21 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=48.3
Q ss_pred CCCCccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 022018 155 GVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (304)
Q Consensus 155 G~~~~sR~evvk~lW~YIK~~nLqdP~~kr~I~cD~~Lk~lfg~~~i~~f~m~k~L~~hl~ 215 (304)
|...|+|.+|...|.++|.+.--.++ ..|..|..|..-+|-+++.+.+|.-.|..+|-
T Consensus 1 ~~~~m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG~DSl~~vel~~~le~~fg 58 (84)
T 2kwl_A 1 GPGSMDNDEIFSKVRSIISEQLDKKE---DEITTDSRFVEDLNADSLDIYELLYLLEEAFD 58 (84)
T ss_dssp CCCCSTHHHHHHHHHHHHHHHHCCCG---GGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCc---ccCCCCCchhhhcCCCHHHHHHHHHHHHHHHC
Confidence 56789999999999999988642333 56888999977799999999999999998874
No 15
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=54.14 E-value=13 Score=28.71 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHhhC-----C--------------CCCccHHHHHHHHHHHhCCCCchhhH
Q 022018 2 VSDSELIARLQEFLKNS-----D--------------LNTTTTGIVRRQLEKDFGVDLTDKKI 45 (304)
Q Consensus 2 ~sd~ei~~~I~~IL~~a-----D--------------l~~vT~k~VR~~Le~~fgvDLs~kK~ 45 (304)
++.+++...|.+||... + ++.+..-.+...||+.|||.+....-
T Consensus 18 ~~~~~i~~~i~~il~~~l~~~v~~~~i~~d~~l~dlGlDSL~~veLv~~lE~~fgI~i~~~~l 80 (105)
T 2jq4_A 18 YFQGHMNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLL 80 (105)
T ss_dssp -----CHHHHHHHHHHTSCCSSCGGGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccCCCcccCCCCCCHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHh
Confidence 45566777777777763 1 23344457999999999999987543
No 16
>2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A
Probab=53.34 E-value=8.3 Score=29.53 Aligned_cols=40 Identities=23% Similarity=0.396 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhCC--------------CCCccHHHHHHHHHHHhCCCCchhh
Q 022018 5 SELIARLQEFLKNSD--------------LNTTTTGIVRRQLEKDFGVDLTDKK 44 (304)
Q Consensus 5 ~ei~~~I~~IL~~aD--------------l~~vT~k~VR~~Le~~fgvDLs~kK 44 (304)
..|...|-.||.-.+ ++.+..-.||..|+..||+.|+..-
T Consensus 9 ~~v~~~va~iLg~~~~~~I~~~~~l~dLG~DSL~aVELr~~Le~~fgi~lp~~~ 62 (91)
T 2cg5_B 9 RDLVEAVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLVLSVRE 62 (91)
T ss_dssp TTHHHHHHHHTTCCSCTTSCTTSBTTTTTCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_pred HHHHHHHHHHHCCCchhhCCCCCCHHHhCCcchHHHHHHHHHHHHHCCCCCHHH
Confidence 467888889987654 3445556799999999999998643
No 17
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=52.34 E-value=21 Score=25.17 Aligned_cols=43 Identities=19% Similarity=0.369 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHhhC---CCCCc---------------cHHHHHHHHHHHhCCCCchh
Q 022018 1 MVSDSELIARLQEFLKNS---DLNTT---------------TTGIVRRQLEKDFGVDLTDK 43 (304)
Q Consensus 1 m~sd~ei~~~I~~IL~~a---Dl~~v---------------T~k~VR~~Le~~fgvDLs~k 43 (304)
|-|.+++...|.+|++.. +...+ ..-.+...||+.||+.+...
T Consensus 1 Mm~~~~i~~~l~~ii~~~l~~~~~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~ 61 (81)
T 2lol_A 1 MSTTDKIEQKVIEMVAEKLNKDKAIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDD 61 (81)
T ss_dssp CCSHHHHHHHHHHHHHHHSCCCTTTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHCCCCCGG
T ss_pred CCCHHHHHHHHHHHHHHHHCCChhhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHCCCCCHH
Confidence 667888888888887652 22222 22368899999999998764
No 18
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=51.44 E-value=18 Score=27.98 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHhhC--C--------------------CCCccHHHHHHHHHHHhCCCCchh
Q 022018 3 SDSELIARLQEFLKNS--D--------------------LNTTTTGIVRRQLEKDFGVDLTDK 43 (304)
Q Consensus 3 sd~ei~~~I~~IL~~a--D--------------------l~~vT~k~VR~~Le~~fgvDLs~k 43 (304)
+.++|...|.+||+.. + ++.+..-.+.-.||+.|||.+..-
T Consensus 16 ~~~~i~~~i~~il~e~l~~~~~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~fgi~i~~~ 78 (107)
T 3ce7_A 16 DINAVTNYIVGMCQKFLQKGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPDE 78 (107)
T ss_dssp CHHHHHHHHHHHHHTTBCTTCCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCCCCHH
T ss_pred CHHHHHHHHHHHHHHHhCCccccCCCCcccccCcccccCCCHHHHHHHHHHHHHHHCCCCCHH
Confidence 6788999999998754 1 334455578999999999999864
No 19
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=47.89 E-value=33 Score=24.20 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=19.6
Q ss_pred CCCccHHHHHHHHHHHhCCCCchh
Q 022018 20 LNTTTTGIVRRQLEKDFGVDLTDK 43 (304)
Q Consensus 20 l~~vT~k~VR~~Le~~fgvDLs~k 43 (304)
++.+..-.+...||+.||+++...
T Consensus 36 ~DSl~~vel~~~le~~fgi~i~~~ 59 (82)
T 2ava_A 36 ADSLDTVEIVMNLEEEFGINVDED 59 (82)
T ss_dssp TCCSCHHHHHHHHHHHTTCCCCGG
T ss_pred CCHHHHHHHHHHHHHHHCCccCHH
Confidence 345667789999999999999764
No 20
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=44.75 E-value=14 Score=26.21 Aligned_cols=55 Identities=11% Similarity=0.205 Sum_probs=43.0
Q ss_pred CccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 022018 158 ELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (304)
Q Consensus 158 ~~sR~evvk~lW~YIK~~nLqdP~~kr~I~cD~~Lk~lfg~~~i~~f~m~k~L~~hl~ 215 (304)
.|+|.++...|.++|.+.--.++ ..|..|..|..-+|-+++.+.+|...|..+|-
T Consensus 2 ~m~~~~i~~~l~~~l~~~l~~~~---~~i~~~~~l~~dlG~DSl~~vel~~~le~~fg 56 (81)
T 1f80_D 2 PLGSADTLERVTKIIVDRLGVDE---ADVKLEASFKEDLGADXLDVVELVMELEDEFD 56 (81)
T ss_dssp ---CCHHHHHHHHHHHHHSSCCS---SCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCH---HhCCCccchHHHcCCcHHHHHHHHHHHHHHhC
Confidence 47888888899998887643333 46888999877799999999999999999984
No 21
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.18 E-value=18 Score=27.09 Aligned_cols=60 Identities=13% Similarity=0.255 Sum_probs=46.6
Q ss_pred hhCCCCccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 022018 153 FIGVTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (304)
Q Consensus 153 ~lG~~~~sR~evvk~lW~YIK~~nLqdP~~kr~I~cD~~Lk~lfg~~~i~~f~m~k~L~~hl~ 215 (304)
|.++..+++.+|...|.++|.+.--.++ ..|..|..|..-+|.+++.+.+|.-.|..+|-
T Consensus 5 ~~~m~~m~~~~i~~~l~~~l~~~l~~~~---~~i~~d~~l~~dlG~DSL~~vel~~~le~~fg 64 (99)
T 2dnw_A 5 SSGMPPLTLEGIQDRVLYVLKLYDKIDP---EKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFG 64 (99)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHCTTSCT---TTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTT
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHhCCCH---hhCCCCCchhhhcCCCHHHHHHHHHHHHHHHC
Confidence 3456679999999999999987632233 45777777754579999999999999999884
No 22
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=39.16 E-value=38 Score=26.62 Aligned_cols=42 Identities=19% Similarity=0.372 Sum_probs=28.8
Q ss_pred HHHhhCCCCCccHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHhh
Q 022018 13 EFLKNSDLNTTTTGIVRRQLEKDFGVDLTDKKIFIREQVDLFLQS 57 (304)
Q Consensus 13 ~IL~~aDl~~vT~k~VR~~Le~~fgvDLs~kK~~I~~~I~~~l~~ 57 (304)
-+...-..+.||...|+++|+. |||+.++ +.|..+++.++.-
T Consensus 16 ~~~~~~~~~~Vsae~L~eEfde-fGi~~~d--~VldKc~ELC~~y 57 (101)
T 2keb_A 16 VLFQGPGSMSASAQQLAEELQI-FGLDCEE--ALIEKLVELCVQY 57 (101)
T ss_dssp --------CCCCHHHHHHHHHH-HTCBCCH--HHHHHHHHHHHHH
T ss_pred heeeCCchhhccHHHHHHHHHH-cCCCCCH--HHHHHHHHHHHHc
Confidence 3455667889999999999975 9999999 6888888777753
No 23
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=39.08 E-value=28 Score=24.49 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=43.5
Q ss_pred ccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 022018 159 LARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (304)
Q Consensus 159 ~sR~evvk~lW~YIK~~nLqdP~~kr~I~cD~~Lk~lfg~~~i~~f~m~k~L~~hl~ 215 (304)
|+|.++...|.++|.+.-=.++ ..|-.|..|..-+|-+++.+.+|...|..+|-
T Consensus 2 m~~~~i~~~l~~ii~~~l~~~~---~~i~~~~~l~~dlG~DSl~~~el~~~le~~fg 55 (81)
T 2lol_A 2 STTDKIEQKVIEMVAEKLNKDK---AIITTDSRFIEDLKADSLDTVELMMAIEVEYG 55 (81)
T ss_dssp CSHHHHHHHHHHHHHHHSCCCT---TTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHCCCh---hhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHC
Confidence 6888998889888887542233 45788888877789999999999999999874
No 24
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=38.04 E-value=31 Score=24.17 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=43.2
Q ss_pred ccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 022018 159 LARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (304)
Q Consensus 159 ~sR~evvk~lW~YIK~~nLqdP~~kr~I~cD~~Lk~lfg~~~i~~f~m~k~L~~hl~ 215 (304)
|+|.++...|.++|.+.-=.++ ..|-.|..|..-+|.+++.+.+|...|..+|-
T Consensus 3 m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fg 56 (82)
T 2cnr_A 3 ATQEEIVAGLAEIVNEIAGIPV---EDVKLDKSFTDDLDVDSLSMVEVVVAAEERFD 56 (82)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCT---TTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGT
T ss_pred CCHHHHHHHHHHHHHHHhCCCH---HHCCCCcchhhccCCChHHHHHHHHHHHHHhC
Confidence 7899999999998887642232 45778888765679999999999999999984
No 25
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=37.87 E-value=47 Score=24.65 Aligned_cols=54 Identities=11% Similarity=0.166 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHhhCC--------------CCCccHHHHHHHHHHHhCCCCchhh----HHHHHHHHHH
Q 022018 1 MVSDSELIARLQEFLKNSD--------------LNTTTTGIVRRQLEKDFGVDLTDKK----IFIREQVDLF 54 (304)
Q Consensus 1 m~sd~ei~~~I~~IL~~aD--------------l~~vT~k~VR~~Le~~fgvDLs~kK----~~I~~~I~~~ 54 (304)
|-|-++|..-+.++|..-. ++.+..-.+..+|++.|||.++..- .-|+++++.+
T Consensus 1 M~tle~l~~I~~e~l~~d~~~i~~~~~~~d~lg~DSL~~veli~~ie~~fgi~i~~~~l~~~~TV~dl~~~I 72 (87)
T 2kjs_A 1 MPTLDALTPIFRQVFDDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQKLKNVGDLADLV 72 (87)
T ss_dssp CCSHHHHHHHHHHHHTCSSCCCCTTCCSTTCSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHHHH
T ss_pred CchHHHHHHHHHHHhCCCccccCCCCCcccCCCCChHHHHHHHHHHHHHhCceecHHHHHcCCCHHHHHHHH
Confidence 6677888888888886311 2333444689999999999998753 3355554433
No 26
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=36.87 E-value=50 Score=24.52 Aligned_cols=42 Identities=26% Similarity=0.397 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHhhC---C--------------CCCccHHHHHHHHHHHhCCCCchhh
Q 022018 3 SDSELIARLQEFLKNS---D--------------LNTTTTGIVRRQLEKDFGVDLTDKK 44 (304)
Q Consensus 3 sd~ei~~~I~~IL~~a---D--------------l~~vT~k~VR~~Le~~fgvDLs~kK 44 (304)
+-++|...|.++|... + ++.+..-.+...||+.|||.|....
T Consensus 5 t~~~l~~ii~~~l~~~~~~~~~~i~~d~~~~dlG~DSL~~vel~~~le~~fgi~i~~~~ 63 (95)
T 1nq4_A 5 TLSDLLTLLRECAGEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDA 63 (95)
T ss_dssp CHHHHHHHHHHHHTCSSTTCSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSCTTH
T ss_pred cHHHHHHHHHHHHccccccccccCCCCCChhhhCCCHHHHHHHHHHHHHHHCCccCHHH
Confidence 5688888899988743 1 3445556899999999999998743
No 27
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=36.84 E-value=30 Score=27.22 Aligned_cols=40 Identities=18% Similarity=0.373 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhC-----------C--CCCccHHHHHHHHHHHhCCCCchh
Q 022018 4 DSELIARLQEFLKNS-----------D--LNTTTTGIVRRQLEKDFGVDLTDK 43 (304)
Q Consensus 4 d~ei~~~I~~IL~~a-----------D--l~~vT~k~VR~~Le~~fgvDLs~k 43 (304)
.++|...|.+||... | ++++..-.+...||+.|||.+...
T Consensus 28 ~~ei~~~v~~il~e~l~I~~d~~l~~dLGlDSLd~veLi~~LEe~FgI~I~~e 80 (113)
T 2cgq_A 28 EEAINATIQRILRTDRGITANQVLVDDLGFDSLKLFQLITELEDEFDIAISFR 80 (113)
T ss_dssp HHHHHHHHHHHHTCCSCCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCchhhhcCCCHHHHHHHHHHHHHHhCCCcCHH
Confidence 467888899998762 2 345555689999999999999874
No 28
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=34.78 E-value=30 Score=22.70 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=15.9
Q ss_pred CCCccHHHHHHHHHHHhCCCC
Q 022018 20 LNTTTTGIVRRQLEKDFGVDL 40 (304)
Q Consensus 20 l~~vT~k~VR~~Le~~fgvDL 40 (304)
|+-+-...+.++||++|||+-
T Consensus 13 lTvlE~~eLvk~leekfGVsa 33 (40)
T 1dd4_C 13 LTVSELAELVKKLEDKFGVTA 33 (40)
T ss_dssp SCHHHHHHHHHHHHHHTCCCS
T ss_pred CcHHHHHHHHHHHHHHHCCCc
Confidence 444444689999999999974
No 29
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=33.26 E-value=46 Score=23.95 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=18.3
Q ss_pred CCccHHHHHHHHHHHhCCCCchh
Q 022018 21 NTTTTGIVRRQLEKDFGVDLTDK 43 (304)
Q Consensus 21 ~~vT~k~VR~~Le~~fgvDLs~k 43 (304)
+.+..-.++..||+.||+++...
T Consensus 44 DSl~~vel~~~lE~~fgi~i~~~ 66 (88)
T 2l4b_A 44 DSLDFVDLIMSLEERFSLEISDE 66 (88)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCHH
T ss_pred cHHHHHHHHHHHHHHHCCCcCHH
Confidence 34455579999999999999864
No 30
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=30.17 E-value=30 Score=24.79 Aligned_cols=53 Identities=13% Similarity=0.029 Sum_probs=41.4
Q ss_pred cHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 022018 160 ARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (304)
Q Consensus 160 sR~evvk~lW~YIK~~nLqdP~~kr~I~cD~~Lk~lfg~~~i~~f~m~k~L~~hl~ 215 (304)
++.+|...|-+||.+.--.++ ..|..|..|..+.+-+++.+.+|.-.|..+|-
T Consensus 1 ~~~~i~~~i~~il~~~~~~~~---~~i~~d~~l~~~g~lDSl~~velv~~lE~~fg 53 (80)
T 1dv5_A 1 ADEAIKNGVLDILADLTGSDD---VKKNLDLNLFETGLLDSMGTVQLLLELQSQFG 53 (80)
T ss_dssp CCHHHHHHHHHHHHHHHTSSS---TTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSC
T ss_pred CHHHHHHHHHHHHHHHhCCCc---ccCCCCcchhhccCcChHHHHHHHHHHHHHhC
Confidence 466788889999987653332 34788888877655999999999999999983
No 31
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=29.92 E-value=68 Score=23.74 Aligned_cols=41 Identities=17% Similarity=0.381 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCC-ccHHHHHHHHHHHhCCCCchh
Q 022018 2 VSDSELIARLQEFLKNSDLNT-TTTGIVRRQLEKDFGVDLTDK 43 (304)
Q Consensus 2 ~sd~ei~~~I~~IL~~aDl~~-vT~k~VR~~Le~~fgvDLs~k 43 (304)
.|.+.|...|.+|+..-|... +|-.+|...|.+. |++++-|
T Consensus 16 ~S~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~-Gi~IaRR 57 (76)
T 2ahq_A 16 LTQGELMKLIKEIVENEDKRKPYSDQEIANILKEK-GFKVARR 57 (76)
T ss_dssp CCHHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTT-SSCCCHH
T ss_pred ccHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-CCCccHH
Confidence 578899999999999999754 6888999999887 9999865
No 32
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=29.08 E-value=26 Score=24.38 Aligned_cols=54 Identities=17% Similarity=0.332 Sum_probs=41.3
Q ss_pred ccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 022018 159 LARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (304)
Q Consensus 159 ~sR~evvk~lW~YIK~~nLqdP~~kr~I~cD~~Lk~lfg~~~i~~f~m~k~L~~hl~ 215 (304)
|+|.++...|.++|.+.-=.++ ..|-.|..|..-+|-+++.+.+|...|..+|-
T Consensus 1 M~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fg 54 (80)
T 1x3o_A 1 MTEQEIFEKVKAVIADKLQVEP---EKVTLEARFIEDLGADSLDTVELIMGLEDEFG 54 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCG---GGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhCCCH---HHCCCcCcHHhhcCccHHHHHHHHHHHHHHHC
Confidence 5788888888888876532222 45777888766789999999999999998874
No 33
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=28.99 E-value=1.1e+02 Score=21.23 Aligned_cols=40 Identities=10% Similarity=0.185 Sum_probs=30.5
Q ss_pred hCCCCCccHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHhh
Q 022018 17 NSDLNTTTTGIVRRQLEKDFGVDLTDKKIFIREQVDLFLQS 57 (304)
Q Consensus 17 ~aDl~~vT~k~VR~~Le~~fgvDLs~kK~~I~~~I~~~l~~ 57 (304)
..|+..+|+..++..|.. +|.+.+.+|+.+-+-|..+|..
T Consensus 7 ~~~l~klkV~eLK~~L~~-rGL~~~G~KaeLieRL~~~l~~ 46 (55)
T 2do1_A 7 GVELHKLKLAELKQECLA-RGLETKGIKQDLIHRLQAYLEE 46 (55)
T ss_dssp CCCTTTSCHHHHHHHHHH-HTCCCCSCHHHHHHHHHHHHHH
T ss_pred ccCHHHCcHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHhc
Confidence 468999999999887765 7888888887665666666653
No 34
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=28.54 E-value=39 Score=25.71 Aligned_cols=55 Identities=13% Similarity=0.233 Sum_probs=46.0
Q ss_pred CCccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 022018 157 TELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (304)
Q Consensus 157 ~~~sR~evvk~lW~YIK~~nLqdP~~kr~I~cD~~Lk~lfg~~~i~~f~m~k~L~~hl~ 215 (304)
..|.|.++...|+++|.+.--.+| ..|..|..| .-+|.+++.+.+|.-.|...|-
T Consensus 11 ~~~~~~~i~~~l~~ila~~l~v~~---~~I~~d~~L-~dLGlDSL~~veL~~~LE~~fg 65 (100)
T 1vku_A 11 HHMERKKLIAKFVEIASEKMGKDL---ETVDEENTF-KELGFDSIDVIDLVMFFEDEFA 65 (100)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCCCC---CSCCTTSBT-TTTTCCHHHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHHHHHHHHHCCCH---HHCCCCCCH-HHcCCchHHHHHHHHHHHHHHC
Confidence 478999999999999988643343 468889999 6789999999999999998874
No 35
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=27.13 E-value=50 Score=23.25 Aligned_cols=53 Identities=15% Similarity=0.295 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 022018 160 ARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (304)
Q Consensus 160 sR~evvk~lW~YIK~~nLqdP~~kr~I~cD~~Lk~lfg~~~i~~f~m~k~L~~hl~ 215 (304)
||.++...|.++|.+.=-.++. ..|-.|..|. =+|.+++.+.+|.-.|..+|-
T Consensus 1 ~~~~i~~~l~~i~~~~l~~~~~--~~i~~~~~l~-dlG~DSl~~vel~~~le~~fg 53 (82)
T 2ava_A 1 AKKETIDKVSDIVKEKLALGAD--VVVTADSEFS-KLGADSLDTVEIVMNLEEEFG 53 (82)
T ss_dssp CCHHHHHHHHHHHHHHTTCSSS--SCCCSSCCSC-CCTTCCSCHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHhCCCcc--cccCCCCchh-hcCCCHHHHHHHHHHHHHHHC
Confidence 4677878888887775322332 2577788876 469999999999999999884
No 36
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Probab=25.77 E-value=83 Score=21.41 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=18.5
Q ss_pred CCccHHHHHHHHHHHhCCCCchh
Q 022018 21 NTTTTGIVRRQLEKDFGVDLTDK 43 (304)
Q Consensus 21 ~~vT~k~VR~~Le~~fgvDLs~k 43 (304)
+.+..-.++..|++.||++++..
T Consensus 34 DSl~~~~l~~~le~~~gi~i~~~ 56 (77)
T 2ehs_A 34 DSLDVVELIMAFEEEFGIEIPDE 56 (77)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCHH
T ss_pred CHHHHHHHHHHHHHHhCCccCHH
Confidence 44555689999999999999865
No 37
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=25.69 E-value=83 Score=21.71 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=17.5
Q ss_pred CccHHHHHHHHHHHhCCCCchh
Q 022018 22 TTTTGIVRRQLEKDFGVDLTDK 43 (304)
Q Consensus 22 ~vT~k~VR~~Le~~fgvDLs~k 43 (304)
.+..-.++..|++.||+++...
T Consensus 37 Sl~~~el~~~le~~fgi~i~~~ 58 (78)
T 1l0i_A 37 SLDTVELVMALEEEFDTEIPDE 58 (78)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHH
Confidence 3444579999999999999764
No 38
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=24.40 E-value=50 Score=23.53 Aligned_cols=54 Identities=13% Similarity=0.090 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhhhCCCCCC-CCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 022018 161 RTEVVKQLWAYIREKDLQDPN-NRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (304)
Q Consensus 161 R~evvk~lW~YIK~~nLqdP~-~kr~I~cD~~Lk~lfg~~~i~~f~m~k~L~~hl~ 215 (304)
|..+...|.++|.+.=-.++. .-..|-.|..| .-+|.+++.+.+|.-.|..+|-
T Consensus 3 ~~~~~~~l~~il~~~l~~~~~~~~~~i~~~~~l-~dlG~DSL~~vel~~~le~~fg 57 (86)
T 1af8_A 3 TLLTTDDLRRALVECAGETDGTDLSGDFLDLRF-EDIGYDSLALMETAARLESRYG 57 (86)
T ss_dssp CSSCHHHHHHHHHTTCCCCSCCCTTTCSSTTST-TTTTCCTTTHHHHHHHHTTTTC
T ss_pred hHHHHHHHHHHHHHHhCCCcccccccCCCCCCh-hhcCCCHHHHHHHHHHHHHHHC
Confidence 333455566666554323333 11256778888 5679999999999999999984
No 39
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=24.37 E-value=1.1e+02 Score=25.60 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=33.9
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHhCCCCchhhHHHHHHHHHHH
Q 022018 10 RLQEFLKNSDLNTTTTGIVRRQLEKDFGVDLTDKKIFIREQVDLFL 55 (304)
Q Consensus 10 ~I~~IL~~aDl~~vT~k~VR~~Le~~fgvDLs~kK~~I~~~I~~~l 55 (304)
.|.+....-.|..+|+..+|..|..+ |+..+.+|+.+=+.|..+|
T Consensus 51 ~i~~l~~~g~L~kltV~eLK~~l~~~-gL~~~GkKadLI~Ri~~~l 95 (151)
T 1jjr_A 51 ELKTHISKGTLGKFTVPMLKEACRAY-GLKSGLKKQELLEALTKHF 95 (151)
T ss_dssp HHHHHHHHTCTTSSCHHHHHHHHHHH-TCCCCSSSHHHHHHHHHTT
T ss_pred HHHHHHHcCcHHhccHHHHHHHHHHc-CCCCcccHHHHHHHHHHHH
Confidence 45556688999999999999999886 8888888875433344433
No 40
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=23.08 E-value=54 Score=25.16 Aligned_cols=55 Identities=13% Similarity=0.234 Sum_probs=43.9
Q ss_pred CccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 022018 158 ELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (304)
Q Consensus 158 ~~sR~evvk~lW~YIK~~nLqdP~~kr~I~cD~~Lk~lfg~~~i~~f~m~k~L~~hl~ 215 (304)
.|++.+|...|..+|.+.-=.++ ..|-.|..|..-+|.|++.+.+|.-.|..+|-
T Consensus 2 ~m~~~~i~~~l~~il~~~l~~~~---~~i~~d~~l~~dlG~DSL~~vel~~~lE~~fg 56 (115)
T 1klp_A 2 PVTQEEIIAGIAEIIEEVTGIEP---SEITPEKSFVDDLDIDSLSMVEIAVQTEDKYG 56 (115)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCCT---TTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHhCcCH---HhCCCCCchhhccCCCHHHHHHHHHHHHHHHC
Confidence 37889999999998887532233 45778888866789999999999999999985
No 41
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=22.43 E-value=2.2e+02 Score=24.40 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhCCCCCccHHHHHHHHHHHhCCCCchhhHHHHHHHHHHH
Q 022018 6 ELIARLQEFLKNSDLNTTTTGIVRRQLEKDFGVDLTDKKIFIREQVDLFL 55 (304)
Q Consensus 6 ei~~~I~~IL~~aDl~~vT~k~VR~~Le~~fgvDLs~kK~~I~~~I~~~l 55 (304)
-|...|.+-|....-.++|.+.+...|.+..|+.-.+=+.+|+.+++.+.
T Consensus 30 ~~l~~i~~~L~~~~~~~Mtk~eLi~~ia~~~~lsk~da~~vl~~l~~~i~ 79 (204)
T 2iie_A 30 EMLEHMASTLAQGGSGGLTKAEMSEYLFDKLGLSKRDAKELVELFFEEIR 79 (204)
T ss_dssp HHHHHHHHHHHTCCSSSBCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 35556666677777889999999999999988754444455544444333
No 42
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid}
Probab=21.97 E-value=1.2e+02 Score=27.49 Aligned_cols=48 Identities=10% Similarity=0.123 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCCccHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 022018 2 VSDSELIARLQEFLKNSDLNTTTTGIVRRQLEKDFGVDLTDKKIFIREQV 51 (304)
Q Consensus 2 ~sd~ei~~~I~~IL~~aDl~~vT~k~VR~~Le~~fgvDLs~kK~~I~~~I 51 (304)
||+++|...|...+.... ..|...++..|+...|++....+..|+..+
T Consensus 78 vsd~ev~~~i~~~~~~~~--~~~~~~~~~~L~~~~g~t~~~~~~~lr~~l 125 (325)
T 3nrk_A 78 VNEQRVDSEIEKRMEVMG--ITNRKQFEKTMETSSGMPFELWVTELPYQI 125 (325)
T ss_dssp CCHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHCSCHHHHGGGHHHHH
T ss_pred cCHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 789999999999333333 667888999999889999999888887764
No 43
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=21.52 E-value=20 Score=26.16 Aligned_cols=32 Identities=13% Similarity=0.070 Sum_probs=26.6
Q ss_pred CCCCCCCccccchhHHhhhCCCccChhhHHHH
Q 022018 178 QDPNNRRNIVCDERLRALFGVDTINMFQMNKA 209 (304)
Q Consensus 178 qdP~~kr~I~cD~~Lk~lfg~~~i~~f~m~k~ 209 (304)
-||..+..-++|+.+..|||..+-.|..|++.
T Consensus 24 VD~~~lE~yLsdedF~~vFgmsr~eF~~LP~W 55 (67)
T 2k6m_S 24 VDPLKLEIYLTDEDFEFALDMTRDEYNALPAW 55 (67)
T ss_dssp SBTTBCGGGSCHHHHHHHTSSCHHHHTTSCHH
T ss_pred CCchHHHhhCCHHHHHHHHCcCHHHHHHCcHH
Confidence 37788888999999999999988777776654
No 44
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=20.32 E-value=38 Score=26.66 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=41.6
Q ss_pred CCCccHHHHHHHHHHHHhhhCCCCCCCCCccccchhHHhhhCCCccChhhHHHHHHccCC
Q 022018 156 VTELARTEVVKQLWAYIREKDLQDPNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIW 215 (304)
Q Consensus 156 ~~~~sR~evvk~lW~YIK~~nLqdP~~kr~I~cD~~Lk~lfg~~~i~~f~m~k~L~~hl~ 215 (304)
...| |.+|...|.++|.+.-- |..|..|..-+|-|++.+.+|.-.|...|-
T Consensus 24 ~~~M-~~ei~~~v~~il~e~l~--------I~~d~~l~~dLGlDSLd~veLi~~LEe~Fg 74 (113)
T 2cgq_A 24 QGAM-EEAINATIQRILRTDRG--------ITANQVLVDDLGFDSLKLFQLITELEDEFD 74 (113)
T ss_dssp --CH-HHHHHHHHHHHHTCCSC--------CCTTCBTTTTTCCCHHHHHHHHHHHHHHHT
T ss_pred cccc-HHHHHHHHHHHHHHHhC--------CCCCCchhhhcCCCHHHHHHHHHHHHHHhC
Confidence 3357 89999999999987541 778888877899999999999999988874
Done!