BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022020
(304 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 141/297 (47%), Gaps = 27/297 (9%)
Query: 15 LNCIDLSDPDIQKSA-ASLKQACMDSGFFYVINHGISKEFMDEVFAQSKKFFELPFDEKM 73
L I+ D I+++ LK+A +D G ++INHGI + M+ V ++FF L +EK
Sbjct: 51 LKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKE 110
Query: 74 KLWVERNRGYKQPLKNQFFDQETNQ-QAHGEAYSLVGPETEDDLDPEKPLCGPNVWPSAD 132
K ++ G Q ++ + + Q + + L PE + DL ++WP
Sbjct: 111 KYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDL---------SIWPKTP 161
Query: 133 VLPGWKETMLRYQQEALNLGRKIGRIIALALDLDVDFFGKPEILG--NAMPYVSFNHYGV 190
+ E Y + L K+ + +++ L L+ D K E+ G + + N+Y
Sbjct: 162 --SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEK-EVGGLEELLLQMKINYY-- 216
Query: 191 QDADPSKEYILGTPAHSDPSLITLLATDEVPGLQICRNIHANPRVWENVVPLKDAFIVNI 250
P E LG AH+D S +T + + VPGLQ+ + V VP D+ +++I
Sbjct: 217 -PKCPQPELALGVEAHTDVSALTFILHNMVPGLQL---FYEGKWVTAKCVP--DSIVMHI 270
Query: 251 GDMLERMSNCVFRSTMHRVLFRQERYTIAYFVY---PSNDAMIECFPTCKSEEKPPK 304
GD LE +SN ++S +HR L +E+ I++ V+ P + +++ P S E P K
Sbjct: 271 GDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAK 327
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 141/297 (47%), Gaps = 27/297 (9%)
Query: 15 LNCIDLSDPDIQKSA-ASLKQACMDSGFFYVINHGISKEFMDEVFAQSKKFFELPFDEKM 73
L I+ D I+++ LK+A +D G ++INHGI + M+ V ++FF L +EK
Sbjct: 52 LKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKE 111
Query: 74 KLWVERNRGYKQPLKNQFFDQETNQ-QAHGEAYSLVGPETEDDLDPEKPLCGPNVWPSAD 132
K ++ G Q ++ + + Q + + L PE + DL ++WP
Sbjct: 112 KYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDL---------SIWPKTP 162
Query: 133 VLPGWKETMLRYQQEALNLGRKIGRIIALALDLDVDFFGKPEILG--NAMPYVSFNHYGV 190
+ E Y + L K+ + +++ L L+ D K E+ G + + N+Y
Sbjct: 163 --SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEK-EVGGLEELLLQMKINYY-- 217
Query: 191 QDADPSKEYILGTPAHSDPSLITLLATDEVPGLQICRNIHANPRVWENVVPLKDAFIVNI 250
P E LG AH+D S +T + + VPGLQ+ + V VP D+ +++I
Sbjct: 218 -PKCPQPELALGVEAHTDVSALTFILHNMVPGLQL---FYEGKWVTAKCVP--DSIVMHI 271
Query: 251 GDMLERMSNCVFRSTMHRVLFRQERYTIAYFVY---PSNDAMIECFPTCKSEEKPPK 304
GD LE +SN ++S +HR L +E+ I++ V+ P + +++ P S E P K
Sbjct: 272 GDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAK 328
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 138/297 (46%), Gaps = 27/297 (9%)
Query: 15 LNCIDLSDPDIQKSA-ASLKQACMDSGFFYVINHGISKEFMDEVFAQSKKFFELPFDEKM 73
L I+ D I+++ LK+A +D G ++INHGI + + V ++FF L +EK
Sbjct: 52 LKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKE 111
Query: 74 KLWVERNRGYKQPLKNQFFDQETNQ-QAHGEAYSLVGPETEDDLDPEKPLCGPNVWPSAD 132
K ++ G Q ++ + + Q + + L PE + DL ++WP
Sbjct: 112 KYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDL---------SIWPKTP 162
Query: 133 VLPGWKETMLRYQQEALNLGRKIGRIIALALDLDVDFFGKPEILG--NAMPYVSFNHYGV 190
+ E Y + L K+ + +++ L L+ D K E+ G + N+Y
Sbjct: 163 --SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEK-EVGGLEELLLQXKINYY-- 217
Query: 191 QDADPSKEYILGTPAHSDPSLITLLATDEVPGLQICRNIHANPRVWENVVPLKDAFIVNI 250
P E LG AH+D S +T + + VPGLQ+ + V VP D+ + +I
Sbjct: 218 -PKCPQPELALGVEAHTDVSALTFILHNXVPGLQL---FYEGKWVTAKCVP--DSIVXHI 271
Query: 251 GDMLERMSNCVFRSTMHRVLFRQERYTIAYFVY---PSNDAMIECFPTCKSEEKPPK 304
GD LE +SN ++S +HR L +E+ I++ V+ P + +++ P S E P K
Sbjct: 272 GDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAK 328
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 134/296 (45%), Gaps = 32/296 (10%)
Query: 27 KSAASLKQACMDSGFFYVINHGISKEFMDEVFAQSKKFFELPF--DEKMKLWVER-NRGY 83
+ A + A D+GFFY +NHGI+ + + +Q K F + +EK L + N+ +
Sbjct: 27 RVAQQIDAASRDTGFFYAVNHGINVQRL----SQKTKEFHMSITPEEKWDLAIRAYNKEH 82
Query: 84 KQPLKNQFFDQETNQQAHGEAYSLVGPETEDD---LDPEKPLCGPNVWPSADVLPGWKET 140
+ ++ ++ ++A E++ + P D + + P NVWP PG+++
Sbjct: 83 QDQVRAGYYLSIPGKKA-VESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQDF 141
Query: 141 MLRYQQEALNLGRKIGRIIALALDLDVDFFGKPEILGNAMPYVSFNHYGVQDADPSKEYI 200
+Y + L + + ALAL + +FF + + + V Y DP E
Sbjct: 142 AEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPY--LDPYPEAA 199
Query: 201 LGTPA---------HSDPSLITLLATDEVPGLQICRNIHANPRVWENVVPLKDAFIVNIG 251
+ T A H D SLIT+L V LQ+ ++++ +++N G
Sbjct: 200 IKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV-----ETAAGYQDIEADDTGYLINCG 254
Query: 252 DMLERMSNCVFRSTMHRVLF-RQERYTIAYFVYPSNDAMIECF----PTCKSEEKP 302
+ ++N +++ +HRV + ER ++ +FV D++I+ F P KS+ +P
Sbjct: 255 SYMAHLTNNYYKAPIHRVKWVNAERQSLPFFVNLGYDSVIDPFDPREPNGKSDREP 310
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 134/296 (45%), Gaps = 32/296 (10%)
Query: 27 KSAASLKQACMDSGFFYVINHGISKEFMDEVFAQSKKFFELPF--DEKMKLWVER-NRGY 83
+ A + A D+GFFY +NHGI+ + + +Q K F + +EK L + N+ +
Sbjct: 27 RVAQQIDAASRDTGFFYAVNHGINVQRL----SQKTKEFHMSITPEEKWDLAIRAYNKEH 82
Query: 84 KQPLKNQFFDQETNQQAHGEAYSLVGPETEDD---LDPEKPLCGPNVWPSADVLPGWKET 140
+ ++ ++ ++A E++ + P D + + P NVWP PG+++
Sbjct: 83 QDQVRAGYYLSIPGKKA-VESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQDF 141
Query: 141 MLRYQQEALNLGRKIGRIIALALDLDVDFFGKPEILGNAMPYVSFNHYGVQDADPSKEYI 200
+Y + L + + ALAL + +FF + + + V Y DP E
Sbjct: 142 AEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPY--LDPYPEAA 199
Query: 201 LGTPA---------HSDPSLITLLATDEVPGLQICRNIHANPRVWENVVPLKDAFIVNIG 251
+ T A H D SLIT+L V LQ+ ++++ +++N G
Sbjct: 200 IKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV-----ETAAGYQDIEADDTGYLINCG 254
Query: 252 DMLERMSNCVFRSTMHRVLF-RQERYTIAYFVYPSNDAMIECF----PTCKSEEKP 302
+ ++N +++ +HRV + ER ++ +FV D++I+ F P KS+ +P
Sbjct: 255 SYMAHLTNNYYKAPIHRVKWVNAERQSLPFFVNLGYDSVIDPFDPREPNGKSDREP 310
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 126/282 (44%), Gaps = 49/282 (17%)
Query: 32 LKQACMDSGFFYVINHGISKEFMDEVFAQSKKFFELPFDEKMKLWVERNRGYKQPLKNQF 91
+K AC + GFF ++NHGI +E D V +K G+ + Q
Sbjct: 24 IKDACENWGFFELVNHGIPREVXDTVEKXTK-------------------GHYKKCXEQR 64
Query: 92 FDQETNQQAHGEAYSLVGPETE-DDLDPE-----KPLCGPNVWPSADVLPGWKETMLRYQ 145
F + +A L G + E D D E K L N+ D+ ++E +
Sbjct: 65 FKELVASKA------LEGVQAEVTDXDWESTFFLKHLPISNISEVPDLDEEYREVXRDFA 118
Query: 146 QEALNLGRKIGRIIALALDLDVDFFGKPEILGNAMPYVSFNHYGVQDAD----PSKEYIL 201
+ L ++ ++ L L+ + K G+ P ++G + ++ P + I
Sbjct: 119 KRLEKLAEELLDLLCENLGLEKGYL-KNAFYGSKGP-----NFGTKVSNYPPCPKPDLIK 172
Query: 202 GTPAHSDPS-LITLLATDEVPGLQICRNIHANPRVWENVVPLKDAFIVNIGDMLERMSNC 260
G AH+D +I L D+V GLQ+ ++ W +V P + + +VN+GD LE ++N
Sbjct: 173 GLRAHTDAGGIILLFQDDKVSGLQLLKDGQ-----WIDVPPXRHSIVVNLGDQLEVITNG 227
Query: 261 VFRSTMHRVLFRQE--RYTIAYFVYPSNDAMIECFPTCKSEE 300
++S HRV+ +++ R ++A F P +DA+I P +E
Sbjct: 228 KYKSVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKE 269
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 125/292 (42%), Gaps = 33/292 (11%)
Query: 24 DIQKSAASLKQACMDSGFFYVINHGISKEFMDEVFAQSKKFFELPFDEKMKLWVERN--R 81
D + A L + GF + ++ + + +D +K FF LP + K + + R
Sbjct: 18 DFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGAR 77
Query: 82 GYKQPLKNQFFDQETNQQAHGEAYSLVG-PETEDDLDPE---KPLCGPNVWPSADVLPGW 137
GY F ET + A + Y L DL P + NVWP+ +P +
Sbjct: 78 GYIP------FGVETAKGA--DHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAE--IPAF 127
Query: 138 KETMLRYQQEALNLGRKIGRIIALALDLDVDFFGKPEIL-GNAMPYVSFNHYGVQDADPS 196
K + G K+ IA L L+ DFF KP + GN++ + HY D +
Sbjct: 128 KHDVSWLYNSLDGXGGKVLEAIATYLKLERDFF-KPTVQDGNSV--LRLLHYPPIPKDAT 184
Query: 197 KEYILGTPAHSDPSLITLLATDEVPGLQICRNIHANPRVWENVVPLKDAFIVNIGDMLER 256
+ AH D + ITLL E GL++ W + P ++NIGD LER
Sbjct: 185 G---VRAGAHGDINTITLLLGAEEGGLEVLDRDGQ----WLPINPPPGCLVINIGDXLER 237
Query: 257 MSNCVFRSTMHRVL------FRQERYTIAYFVYPSNDAMIECFPTCKSEEKP 302
++N V ST+HRV+ RY+ +F++ ++D I+ C + E P
Sbjct: 238 LTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENP 289
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 112/280 (40%), Gaps = 39/280 (13%)
Query: 15 LNCIDLSDPDIQKSAASLKQACMDSGFFYVINHGISKEFMDEVFAQSKKFFELPFDEKMK 74
L ID D SA ++ ++GF + NH I KE ++ ++ + + FF +
Sbjct: 4 LETIDYRAAD---SAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFX 60
Query: 75 LWVERNRGYKQPLKNQFFDQETNQQAHGEAYSLVGPETEDDLDPEKPLCGPNVWPSADVL 134
E + G FF ++ A G T D+ +V+P +
Sbjct: 61 FNRETHDG--------FFPASISETAKGH--------TVKDIKEYY-----HVYPWGRIP 99
Query: 135 PGWKETMLRYQQEALNLGRKIGRIIALAL--DLDVDF-FGKPEILGNAM-PYVSFNHYGV 190
+ +L Y ++A L ++ I ++ F PE + N+ + HY
Sbjct: 100 DSLRANILAYYEKANTLASELLEWIETYSPDEIKAKFSIPLPEXIANSHKTLLRILHYPP 159
Query: 191 QDADPSKEYILGTPAHSDPSLITLLATDEVPGLQICRNIHANPRVWENVVPLKDAFIVNI 250
D I AH D +LIT+L T PGLQ+ A W +V I+NI
Sbjct: 160 XTGDEEXGAIRAA-AHEDINLITVLPTANEPGLQV----KAKDGSWLDVPSDFGNIIINI 214
Query: 251 GDMLERMSNCVFRSTMHRVL------FRQERYTIAYFVYP 284
GD L+ S+ F ST HRV+ + R ++ F++P
Sbjct: 215 GDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHP 254
>pdb|3RJZ|A Chain A, X-Ray Crystal Structure Of The Putative N-Type Atp
Pyrophosphatase From Pyrococcus Furiosus, The Northeast
Structural Genomics Target Pfr23
pdb|3RK0|A Chain A, X-Ray Crystal Structure Of The Putative N-Type Atp
Pyrophosphatase (Pf0828) In Complex With Amp From
Pyrococcus Furiosus, Northeast Structural Genomics
Consortium Target Pfr23
pdb|3RK1|A Chain A, 'x-Ray Crystal Structure Of The Putative N-Type Atp
Pyrophosphatase (Pf0828) In Complex With Atp From
Pyrococcus Furiosus, Northeast Structural Genomics
Consortium Target Pfr23
pdb|3RK1|B Chain B, 'x-Ray Crystal Structure Of The Putative N-Type Atp
Pyrophosphatase (Pf0828) In Complex With Atp From
Pyrococcus Furiosus, Northeast Structural Genomics
Consortium Target Pfr23
Length = 237
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 135 PGWKETMLRYQQEALNLGRKIGRIIALALDLDVDFFGK 172
P W Y +E LNLG KI + A LD + G+
Sbjct: 122 PAWGRDAKEYXRELLNLGFKIXVVGVSAYGLDESWLGR 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,680,446
Number of Sequences: 62578
Number of extensions: 413311
Number of successful extensions: 971
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 945
Number of HSP's gapped (non-prelim): 10
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)