BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022021
(304 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QVZ|A Chain A, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
pdb|1QVZ|B Chain B, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
Length = 237
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 220 RPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYIL-- 277
RPL E K +G +G + +DSI A + + +AK + YL + W Y +
Sbjct: 154 RPLIEGKSITGFTDVGETIXGVDSILKAKNLATVED-VAKKYGAKYLAPVGPWDDYSITD 212
Query: 278 --LSHSQSSAEARSGAVFSLENINN 300
L + A A S AV S++ + N
Sbjct: 213 GRLVTGVNPASAHSTAVRSIDALKN 237
>pdb|1QVW|A Chain A, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
pdb|1QVW|B Chain B, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
Length = 237
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 220 RPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYIL-- 277
RPL E K +G +G + +DSI A + + +AK + YL + W Y +
Sbjct: 154 RPLIEGKSITGFTDVGETIMGVDSILKAKNLATVED-VAKKYGAKYLAPVGPWDDYSITD 212
Query: 278 --LSHSQSSAEARSGAVFSLENINN 300
L + A A S AV S++ + N
Sbjct: 213 GRLVTGVNPASAHSTAVRSIDALKN 237
>pdb|1QVV|A Chain A, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
pdb|1QVV|B Chain B, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
pdb|1QVV|C Chain C, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
pdb|1QVV|D Chain D, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
Length = 237
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 220 RPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYIL-- 277
RPL E K +G +G + +DSI A + + +AK + YL + W Y +
Sbjct: 154 RPLIEGKSITGFTDVGETILGVDSILKAKNLATVED-VAKKYGAKYLAPVGPWDDYSITD 212
Query: 278 --LSHSQSSAEARSGAVFSLENINN 300
L + A A S AV S++ + N
Sbjct: 213 GRLVTGVNPASAHSTAVRSIDALKN 237
>pdb|1RW7|A Chain A, Crystal Structure Of Ydr533cp
Length = 243
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 220 RPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYIL-- 277
RPL E K +G +G + +DSI A + + +AK + YL + W Y +
Sbjct: 154 RPLIEGKSITGFTDVGETILGVDSILKAKNLATVED-VAKKYGAKYLAPVGPWDDYSITD 212
Query: 278 --LSHSQSSAEARSGAVFSLENINN 300
L + A A S AV S++ + N
Sbjct: 213 GRLVTGVNPASAHSTAVRSIDALKN 237
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 19/124 (15%)
Query: 91 QTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIE------------ 138
+ G+Y + + REI E ++ + + ++Q + +L G +
Sbjct: 199 KAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETD 258
Query: 139 ------MTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL 192
TR +ED E + +L+ +G D + A V L+S+K L +EA+ L
Sbjct: 259 LLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKG-LDLVLEALPGL 317
Query: 193 LDEN 196
L++
Sbjct: 318 LEQG 321
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 19/124 (15%)
Query: 91 QTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIE------------ 138
+ G+Y + + REI E ++ + + ++Q + +L G +
Sbjct: 199 KAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETD 258
Query: 139 ------MTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL 192
TR +ED E + +L+ +G D + A V L+S+K L +EA+ L
Sbjct: 259 LLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKG-LDLVLEALPGL 317
Query: 193 LDEN 196
L++
Sbjct: 318 LEQG 321
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 19/124 (15%)
Query: 91 QTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIE------------ 138
+ G+Y + + REI E ++ + + ++Q + +L G +
Sbjct: 199 KAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETD 258
Query: 139 ------MTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL 192
TR +ED E + +L+ +G D + A V L+S+K L +EA+ L
Sbjct: 259 LLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKG-LDLVLEALPGL 317
Query: 193 LDEN 196
L++
Sbjct: 318 LEQG 321
>pdb|1FOK|A Chain A, Structure Of Restriction Endonuclease Foki Bound To Dna
Length = 576
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 122 KIIQLEDKAKKLEGN--IEMTRKEIED--PTEVEIELKRRLGQLTDHLIQ 167
KI Q++D KKL + IE +I+ T + IE+K R QL DH++Q
Sbjct: 321 KIEQIQDNLKKLGFDEVIETIENDIKGLINTGIFIEIKGRFYQLKDHILQ 370
>pdb|2FOK|A Chain A, Structure Of Restriction Endonuclease Foki
pdb|2FOK|B Chain B, Structure Of Restriction Endonuclease Foki
Length = 579
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 122 KIIQLEDKAKKLEGN--IEMTRKEIED--PTEVEIELKRRLGQLTDHLIQ 167
KI Q++D KKL + IE +I+ T + IE+K R QL DH++Q
Sbjct: 324 KIEQIQDNLKKLGFDEVIETIENDIKGLINTGIFIEIKGRFYQLKDHILQ 373
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,974,056
Number of Sequences: 62578
Number of extensions: 244384
Number of successful extensions: 743
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 724
Number of HSP's gapped (non-prelim): 32
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)