BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022021
(304 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B0F9L7|GOGC2_ARATH Golgin candidate 2 OS=Arabidopsis thaliana GN=GC2 PE=1 SV=1
Length = 668
Score = 384 bits (985), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/302 (64%), Positives = 242/302 (80%), Gaps = 4/302 (1%)
Query: 5 ASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQ 64
A+ELQT+MMET++A +LEKQ+HNNTRME L LA LE NA+L R+LAA QKKLE + +Q
Sbjct: 365 AAELQTNMMETLEAADLEKQKHNNTRMEVLTRLAGLEAENAELTRSLAAGQKKLETQIDQ 424
Query: 65 VAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKII 124
VA L+QQ ELKE EEL + N G LK+L S+G +FE ++LEAE + + DKI
Sbjct: 425 VAVLKQQVELKESTLEELKRNTFNIGGRGTTLKQLDTSRGDKFEHQMLEAEISLLTDKIG 484
Query: 125 QLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAF 184
+L+DKA KLE +IEM RKE+E+PTEVEIELKRRL QLTDHLIQKQ+QVEALSSEKAT+ F
Sbjct: 485 RLQDKATKLEADIEMMRKELEEPTEVEIELKRRLNQLTDHLIQKQSQVEALSSEKATILF 544
Query: 185 RIEAVSRLLDENKPV--TGSSSRDLEFGAWDLSQSNLRPLFEEKIRSGKKHIGSLLKQLD 242
RIEAVSRL++ENK + T +SS+DLE G W+LS S +P F++KIRSGKKH+G L+ QL+
Sbjct: 545 RIEAVSRLIEENKGMSATEASSQDLEAGDWELSGSKFKPAFQDKIRSGKKHLGWLVMQLN 604
Query: 243 SIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQ--SSAEARSGAVFSLENINN 300
+IF++G VFLRRNP AK+W++VYLVCLHLWV+YILLSHS SS E RSGAV SLEN +N
Sbjct: 605 AIFISGTVFLRRNPTAKIWAVVYLVCLHLWVLYILLSHSDASSSGELRSGAVISLENFSN 664
Query: 301 TA 302
++
Sbjct: 665 SS 666
>sp|Q3ZU82|GOGA5_RAT Golgin subfamily A member 5 OS=Rattus norvegicus GN=Golga5 PE=1
SV=1
Length = 728
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 109/201 (54%), Gaps = 19/201 (9%)
Query: 97 KRLAASKGVEFEREILEAEYTFIADKIIQ----LEDKAKKLEGNIEMTRKEIEDPT---E 149
K+ A+ + +E E + ++ E+ ++ + + + L+ + K E I+ R ++ + T
Sbjct: 520 KQRASKQELETELDRMKQEFHYVEEDLHRTKNTLQSRIKDREEEIQKLRNQLTNKTLSNS 579
Query: 150 VEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDE--NKPVTGSSSRDL 207
+ EL+ RL QLT+ LIQKQ +E+LS+EK +L F++E + + L P +GSS +
Sbjct: 580 SQSELESRLHQLTETLIQKQTLLESLSTEKNSLVFQLERLEQQLHSAATGPSSGSS---I 636
Query: 208 EFGAWDLSQS----NLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGV---VFLRRNPIAKL 260
D + N+ LF + + G + K SI + +FLRR PIA++
Sbjct: 637 NMSGVDSGEGTRLRNVPVLFNDTETNLAGMYGKVRKAASSIDQFSIRLGIFLRRYPIARV 696
Query: 261 WSLVYLVCLHLWVIYILLSHS 281
+ ++Y+ LHLWV+ +LL++S
Sbjct: 697 FVIIYMALLHLWVMIVLLTYS 717
>sp|Q6GNT7|GOGA5_XENLA Golgin subfamily A member 5 OS=Xenopus laevis GN=golga5 PE=2 SV=1
Length = 722
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 138/278 (49%), Gaps = 36/278 (12%)
Query: 18 AFELEKQRH--NNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELK 75
ELE+ RH + R E +L+ +++ A+L ++ET QV+E E
Sbjct: 456 TMELEEMRHERDMQREEIQKLMGQIQQLKAELQ----------DVETQQVSEAESAREQL 505
Query: 76 EVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEG 135
+ HE+ + + + L+R + ++ +E L + +I ED+ +KL
Sbjct: 506 QDVHEQFATQQRAKQELEAELER--QKQEFQYIQEDLYKTKNTLQGRIRDREDEIQKLRN 563
Query: 136 NIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDE 195
++T K + ++ E+E RL QLT+ LIQKQ +E LS+EK +L +++E RL +
Sbjct: 564 --QLTNKALSSSSQTELE--NRLHQLTETLIQKQTMLENLSTEKNSLVYQLE---RLEHQ 616
Query: 196 NKPVTGSSSRDLEFGAWDLS---------QSNLRPLFEEKIRSGKKHIGSLLKQLDSIFL 246
K V GSS L + ++S N+ LF + + G + K SI
Sbjct: 617 LKNVQGSS---LNGTSINMSVIESNEGARMRNVPVLFSDSDPNVAGMYGRVRKAATSIDQ 673
Query: 247 AGV---VFLRRNPIAKLWSLVYLVCLHLWVIYILLSHS 281
+ +FLRR PIA+++ ++Y+ LHLWV+ +LL+++
Sbjct: 674 FSIRLGIFLRRYPIARVFIIIYMALLHLWVMIVLLTYT 711
>sp|Q9QYE6|GOGA5_MOUSE Golgin subfamily A member 5 OS=Mus musculus GN=Golga5 PE=1 SV=2
Length = 729
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 109/201 (54%), Gaps = 19/201 (9%)
Query: 97 KRLAASKGVEFEREILEAEYTFIADKIIQ----LEDKAKKLEGNIEMTRKEIEDPT---E 149
K+ + + +E E E ++ E+ ++ + + + L+ + K E I+ R ++ + T
Sbjct: 521 KQRTSKQELETELERMKQEFRYMEEDLHRTKNTLQSRIKDREEEIQKLRNQLTNKTLSNS 580
Query: 150 VEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDE--NKPVTGSSSRDL 207
+ EL+ RL QLT+ LIQKQ +E+LS+EK +L F++E + + + + P +GS+ +
Sbjct: 581 SQSELESRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLEQQVHSASSGPNSGSA---I 637
Query: 208 EFGAWDLSQS----NLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGV---VFLRRNPIAKL 260
D + N+ LF + + G + K SI + +FLRR PIA++
Sbjct: 638 NMSGVDSGEGTRLRNVPVLFNDTETNLAGMYGKVRKAASSIDQFSIRLGIFLRRYPIARV 697
Query: 261 WSLVYLVCLHLWVIYILLSHS 281
+ ++Y+ LHLWV+ +LL++S
Sbjct: 698 FVIIYMALLHLWVMIVLLTYS 718
>sp|Q7SXE4|GOGA5_DANRE Golgin subfamily A member 5 OS=Danio rerio GN=golga5 PE=2 SV=1
Length = 760
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 107/202 (52%), Gaps = 18/202 (8%)
Query: 95 YLKRLAASKGVEFEREILEAEYTFIADK----IIQLEDKAKKLEGNIEMTRKEIED---P 147
+ +++ A + +E E E + E +I ++ I L+ + K E I+ R ++ +
Sbjct: 551 HAQQIRAKQEIEAELERSKQELQYIEEEHHRTKITLQGRVKDREDEIQKLRNQLTNKALS 610
Query: 148 TEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPVTG--SSSR 205
+ EL+ RL QLT+ LIQKQ +EAL +EK +L F++E RL + K + G +S+
Sbjct: 611 NSSQAELEGRLHQLTETLIQKQTMLEALGTEKNSLVFQLE---RLEQQLKSLQGGQNSAS 667
Query: 206 DLEFGAWD---LSQSNLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGV---VFLRRNPIAK 259
+ A + Q N LF + G G + K +I + +FLRR P+A+
Sbjct: 668 HINMAAMEGPGARQRNTPILFSDGDGPGTGVYGKVRKAASTIDRFSIRLGIFLRRYPMAR 727
Query: 260 LWSLVYLVCLHLWVIYILLSHS 281
++ ++Y+ LHLWV+ +LL+++
Sbjct: 728 VFVIIYMALLHLWVMIVLLTYT 749
>sp|Q8TBA6|GOGA5_HUMAN Golgin subfamily A member 5 OS=Homo sapiens GN=GOLGA5 PE=1 SV=3
Length = 731
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 107/195 (54%), Gaps = 13/195 (6%)
Query: 100 AASKGVEFEREILEAEYTFIADKIIQ----LEDKAKKLEGNIEMTRKEIEDPT---EVEI 152
A+ + +E E E L+ E+ +I + + + L+ + K + I+ R ++ + T +
Sbjct: 526 ASKQELETELERLKQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKLRNQLTNKTLSNSSQS 585
Query: 153 ELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPVTGSSSRDLEFGAW 212
EL+ RL QLT+ LIQKQ +E+LS+EK +L F++E + + ++ + + S G
Sbjct: 586 ELENRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLEQQMNSASGSSSNGSSINMSGID 645
Query: 213 DLSQSNLR--P-LFEEKIRSGKKHIGSLLKQLDSIFLAGV---VFLRRNPIAKLWSLVYL 266
+ + LR P LF + + G + K SI + +FLRR PIA+++ ++Y+
Sbjct: 646 NGEGTRLRNVPVLFNDTETNLAGMYGKVRKAASSIDQFSIRLGIFLRRYPIARVFVIIYM 705
Query: 267 VCLHLWVIYILLSHS 281
LHLWV+ +LL+++
Sbjct: 706 ALLHLWVMIVLLTYT 720
>sp|Q8S8N9|GOGC1_ARATH Golgin candidate 1 OS=Arabidopsis thaliana GN=GC1 PE=2 SV=2
Length = 707
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 134/293 (45%), Gaps = 23/293 (7%)
Query: 20 ELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAH 79
E E+ HN T+M A++ +LE D + AL Q+ + T +VA+ Q+ L E
Sbjct: 414 EEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFEQKVALLEA-- 471
Query: 80 EELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQ-----------LED 128
E + N + +R E + I + D+ Q +E
Sbjct: 472 -ECTSLNQELQDMEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEEKLSLMEA 530
Query: 129 KAKKLEGNIEMTRKEIEDPTEVE-IELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIE 187
+ +KL + +++ E + E EL++R +LTD L KQ Q+E ++SEKA F++E
Sbjct: 531 EMQKLRVEMAAMKRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLE 590
Query: 188 A-VSRLLDENKPVTGSSSRDLEFGAWDLSQSNLR-----PLFEEKIRSGKKHIGSLLKQL 241
V RL + V S W+ S ++ PL+ + + + + +K L
Sbjct: 591 KEVKRLHEAQVEVEKSRVSRRASATWE-EDSEIKTLEPLPLYHRHMATASTQLQNAVKLL 649
Query: 242 DSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQSSAEARSGAVFS 294
DS + FL R PIA+++ L YLV +HL+++Y L+ Q AEA+ A +
Sbjct: 650 DSGAVRATRFLWRYPIARMFLLFYLVFVHLFLMY-LIHRLQEQAEAQEVAAMT 701
>sp|Q5JLY8|GOGA5_ORYSJ Golgin-84 OS=Oryza sativa subsp. japonica GN=Os01g0744400 PE=2 SV=1
Length = 709
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 130/272 (47%), Gaps = 26/272 (9%)
Query: 26 HNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQ------------QTE 73
HN T+M A++ +LE + + ALA Q+ + +++ EL Q E
Sbjct: 420 HNATKMAAVEREVELEHRAVEASNALARIQRAADQSSSRAMELEHKVAVLEVECASLQQE 479
Query: 74 LKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREI-LEAEYTFIADKIIQLEDKAKK 132
L+E+ + + + ++ A + VE R+ EAE KI LE + +K
Sbjct: 480 LQEMEARNRRAQKKPSEEANQVIQMQAWQEEVERARQSQREAET-----KISSLEAELQK 534
Query: 133 LEGNIEMTRKEIEDPTEVE-IELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 191
+ + +++ E + E +EL++R +LTD L KQ Q+E+++SEKA L F++E +
Sbjct: 535 MRVEMAGMKRDAEHYSRQEHVELEKRYRELTDLLYHKQTQLESMASEKAALEFQLEKSIK 594
Query: 192 LLDENKPVTGSSSR--DLEFGAW----DLSQSNLRPLFEEKIRSGKKHIGSLLKQLDSIF 245
E + + SR AW D+ PL + + + + K LDS
Sbjct: 595 QFHEVQ-MEAERSRVARRSASAWEEDADIKALEPLPLHHRHMATANQQLQKAAKLLDSGA 653
Query: 246 LAGVVFLRRNPIAKLWSLVYLVCLHLWVIYIL 277
+ FL R+P+A++ L YLV +HL+++Y++
Sbjct: 654 VRATRFLWRHPVARVSLLFYLVFVHLFLMYLM 685
>sp|Q8SZ63|GOGA5_DROME Golgin-84 OS=Drosophila melanogaster GN=Golgin84 PE=1 SV=2
Length = 516
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 15/134 (11%)
Query: 157 RLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPVT-----GSSSRDLEFGA 211
RL LT L+++Q+ +E ++SE+ L + E L +N + SSR +
Sbjct: 383 RLKALTQSLVERQSLLERVTSERNALRLQHEKAQTQLQQNMHLVEMESQRGSSRHTMLNS 442
Query: 212 WDLSQSNLRPL------FEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVY 265
D ++ PL F+ ++ + L+Q DS+ + FLRR P+ ++ +VY
Sbjct: 443 TDDVKAQF-PLLMHPSPFDNRV---ARRFKRALRQADSMGIRVGTFLRRYPMMRVSVIVY 498
Query: 266 LVCLHLWVIYILLS 279
+ LHLWV+++LLS
Sbjct: 499 VALLHLWVMFVLLS 512
>sp|P90970|GOGA5_CAEEL Golgin-84 OS=Caenorhabditis elegans GN=T24B1.1 PE=3 SV=2
Length = 530
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 238 LKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHS 281
L +DS + LR +P A+L+ ++Y + +HLW+ +I+L+++
Sbjct: 483 LHTVDSTAFKLLSMLRGHPSARLFFVLYFIIMHLWLFFIVLTYT 526
>sp|Q92817|EVPL_HUMAN Envoplakin OS=Homo sapiens GN=EVPL PE=1 SV=3
Length = 2033
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 16/159 (10%)
Query: 36 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIY 95
L A+LE +AR Q +LE + +Q+ +LR Q L+ + +E+ + + G
Sbjct: 917 LKAQLEEERKRVARV----QHELEAQRSQLLQLRTQRPLERLEEKEVVEFYRDPQLEG-S 971
Query: 96 LKRLAASKGVEFEREI-LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIEL 154
L R+ A E +R L+A+ A K++QLE K K ++ ++ +T KE+ T+VE
Sbjct: 972 LSRVKAQVEEEGKRRAGLQADLEVAAQKVVQLESKRKTMQPHL-LT-KEV---TQVE--- 1023
Query: 155 KRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLL 193
R L Q + Q++ L E A ++ R+E + + L
Sbjct: 1024 --RDPGLDSQAAQLRIQIQQLRGEDAVISARLEGLKKEL 1060
>sp|Q9JLT0|MYH10_RAT Myosin-10 OS=Rattus norvegicus GN=Myh10 PE=1 SV=1
Length = 1976
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 4 MASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARAL--AAAQKKLEME 61
+A ELQ + E + FE EK N + L +LE +L L AAQ++L +
Sbjct: 1112 VARELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTK 1171
Query: 62 TNQ-VAELRQQTELKEVAHEELSQRNSNTHQTGI--------YLKRLAAS-----KGVEF 107
Q VAEL++ E + HE Q H T + KR A+ +G+E
Sbjct: 1172 REQEVAELKKALEDETKNHEAQIQDMRQRHATALEELSEQLEQAKRFKANLEKNKQGLET 1231
Query: 108 EREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHL 165
+ + L E + + E K KKL+ ++ ++ + + +EL + +L + L
Sbjct: 1232 DNKELACEVKVLQQVKAESEHKRKKLDAQVQELHAKVSEGDRLRVELAEKANKLQNEL 1289
>sp|Q61879|MYH10_MOUSE Myosin-10 OS=Mus musculus GN=Myh10 PE=1 SV=2
Length = 1976
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 4 MASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARAL--AAAQKKLEME 61
+A ELQ + E + FE EK N + L +LE +L L AAQ++L +
Sbjct: 1112 VARELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTK 1171
Query: 62 TNQ-VAELRQQTELKEVAHEELSQRNSNTHQTGI--------YLKRLAAS-----KGVEF 107
Q VAEL++ E + HE Q H T + KR A+ +G+E
Sbjct: 1172 REQEVAELKKALEDETKNHEAQIQDMRQRHATALEELSEQLEQAKRFKANLEKNKQGLET 1231
Query: 108 EREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHL 165
+ + L E + + E K KKL+ ++ ++ + + +EL + +L + L
Sbjct: 1232 DNKELACEVKVLQQVKAESEHKRKKLDAQVQELHAKVSEGDRLRVELAEKANKLQNEL 1289
>sp|Q27991|MYH10_BOVIN Myosin-10 OS=Bos taurus GN=MYH10 PE=2 SV=2
Length = 1976
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 16/175 (9%)
Query: 7 ELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARAL--AAAQKKLEMETNQ 64
ELQ + E + FE EK N + L +LE +L L AAQ++L + Q
Sbjct: 1115 ELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQ 1174
Query: 65 -VAELRQQTELKEVAHEELSQRNSNTHQTGI--------YLKRLAAS-----KGVEFERE 110
VAEL++ E + +HE Q H T + KR A+ +G+E + +
Sbjct: 1175 EVAELKKALEEETKSHEAQIQDMRQRHATALEELSEQLEQAKRFKANLEKNKQGLETDNK 1234
Query: 111 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHL 165
L E + + E K KKL+ ++ ++ + + +EL + +L + L
Sbjct: 1235 ELACEVKVLQQVKAESEHKRKKLDAQVQELHAKVSEGDRLRVELAEKANKLQNEL 1289
>sp|Q8TXI4|RAD50_METKA DNA double-strand break repair Rad50 ATPase OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=rad50 PE=3 SV=1
Length = 876
Score = 31.6 bits (70), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 17/90 (18%)
Query: 106 EFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHL 165
EFER LE E LE+K + L+G + RK +E+ E E EL+ RLG +
Sbjct: 238 EFER--LEGELRL-------LENKIESLKGRRDDLRKLVEEGKEAERELQ-RLGDVP--- 284
Query: 166 IQKQAQVEALSSEKATLAFRIEAVSRLLDE 195
++V L +E+A L RIE + LLD+
Sbjct: 285 ----SKVRELENEEAELRRRIEELRNLLDD 310
>sp|P35580|MYH10_HUMAN Myosin-10 OS=Homo sapiens GN=MYH10 PE=1 SV=3
Length = 1976
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 85/200 (42%), Gaps = 18/200 (9%)
Query: 7 ELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARAL--AAAQKKLEMETNQ 64
ELQ + E + FE EK N + L +LE +L L AAQ++L + Q
Sbjct: 1115 ELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQ 1174
Query: 65 -VAELRQQTELKEVAHEELSQRNSNTHQTGI--------YLKRLAAS-----KGVEFERE 110
VAEL++ E + HE Q H T + KR A+ +G+E + +
Sbjct: 1175 EVAELKKALEEETKNHEAQIQDMRQRHATALEELSEQLEQAKRFKANLEKNKQGLETDNK 1234
Query: 111 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQA 170
L E + + E K KKL+ ++ ++ + + +EL + +L + L
Sbjct: 1235 ELACEVKVLQQVKAESEHKRKKLDAQVQELHAKVSEGDRLRVELAEKASKLQNELDNVST 1294
Query: 171 QVEALSSEKATLAFRIEAVS 190
+E +EK + F +A S
Sbjct: 1295 LLE--EAEKKGIKFAKDAAS 1312
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,023,679
Number of Sequences: 539616
Number of extensions: 3555567
Number of successful extensions: 20611
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 1057
Number of HSP's that attempted gapping in prelim test: 18073
Number of HSP's gapped (non-prelim): 2950
length of query: 304
length of database: 191,569,459
effective HSP length: 117
effective length of query: 187
effective length of database: 128,434,387
effective search space: 24017230369
effective search space used: 24017230369
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)