Query 022021
Match_columns 304
No_of_seqs 130 out of 149
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:25:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022021.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022021hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08172 CASP_C: CASP C termin 100.0 1E-31 2.3E-36 248.8 15.6 202 51-286 1-246 (248)
2 PF09787 Golgin_A5: Golgin sub 100.0 1.6E-28 3.4E-33 247.9 23.2 265 6-272 158-511 (511)
3 KOG4677 Golgi integral membran 100.0 1.8E-27 4E-32 231.4 27.2 272 7-284 210-553 (554)
4 KOG0963 Transcription factor/C 99.6 8E-16 1.7E-20 155.6 11.1 213 9-278 370-615 (629)
5 KOG1937 Uncharacterized conser 97.3 0.14 3E-06 51.7 23.0 183 6-193 234-426 (521)
6 TIGR02169 SMC_prok_A chromosom 97.2 0.14 3E-06 56.1 24.6 30 36-65 323-352 (1164)
7 TIGR02168 SMC_prok_B chromosom 97.1 0.11 2.5E-06 56.4 22.8 22 157-178 832-853 (1179)
8 TIGR02169 SMC_prok_A chromosom 97.1 0.11 2.4E-06 56.8 22.6 33 155-187 454-486 (1164)
9 TIGR02168 SMC_prok_B chromosom 97.0 0.21 4.6E-06 54.4 23.8 14 175-188 913-926 (1179)
10 PRK11637 AmiB activator; Provi 97.0 0.29 6.3E-06 48.9 23.0 68 16-83 49-116 (428)
11 PF00261 Tropomyosin: Tropomyo 96.9 0.1 2.2E-06 48.3 17.7 167 27-193 21-213 (237)
12 KOG0161 Myosin class II heavy 96.8 0.27 5.9E-06 57.5 23.7 154 18-194 877-1030(1930)
13 PF10168 Nup88: Nuclear pore c 96.7 0.17 3.7E-06 54.1 19.2 161 14-179 543-708 (717)
14 PF13851 GAS: Growth-arrest sp 96.6 0.5 1.1E-05 42.9 19.6 156 18-179 10-173 (201)
15 COG1196 Smc Chromosome segrega 96.6 0.6 1.3E-05 52.5 23.9 42 150-191 885-926 (1163)
16 KOG4643 Uncharacterized coiled 96.5 0.18 3.9E-06 55.2 18.2 157 37-193 172-345 (1195)
17 PF07888 CALCOCO1: Calcium bin 96.3 0.65 1.4E-05 48.2 20.4 25 157-181 291-315 (546)
18 KOG0971 Microtubule-associated 96.3 0.45 9.7E-06 51.8 19.4 138 7-144 269-440 (1243)
19 PF05667 DUF812: Protein of un 96.3 1.7 3.7E-05 45.7 23.4 83 112-194 445-529 (594)
20 PF10174 Cast: RIM-binding pro 96.2 0.88 1.9E-05 49.2 21.5 173 12-193 285-488 (775)
21 PF12718 Tropomyosin_1: Tropom 96.1 0.76 1.6E-05 39.6 18.4 54 32-85 11-64 (143)
22 PRK02224 chromosome segregatio 96.1 2.2 4.7E-05 46.2 24.3 47 39-85 255-301 (880)
23 COG1196 Smc Chromosome segrega 96.1 1.6 3.4E-05 49.2 23.9 77 7-83 730-806 (1163)
24 PF15070 GOLGA2L5: Putative go 96.1 0.6 1.3E-05 49.3 19.2 63 12-77 2-64 (617)
25 PRK11637 AmiB activator; Provi 96.0 2 4.4E-05 42.8 22.8 67 18-84 58-124 (428)
26 PF10174 Cast: RIM-binding pro 95.9 1.1 2.4E-05 48.5 20.6 131 53-192 228-358 (775)
27 PHA02562 46 endonuclease subun 95.9 2.1 4.5E-05 43.6 21.8 30 53-82 217-246 (562)
28 PF11559 ADIP: Afadin- and alp 95.9 0.98 2.1E-05 38.6 17.8 115 12-145 36-150 (151)
29 PRK02224 chromosome segregatio 95.9 3.3 7.2E-05 44.7 25.6 30 117-146 275-304 (880)
30 PF12718 Tropomyosin_1: Tropom 95.9 1 2.2E-05 38.8 17.8 67 16-82 2-68 (143)
31 PF07888 CALCOCO1: Calcium bin 95.7 3.1 6.8E-05 43.3 23.8 51 35-85 185-235 (546)
32 PRK09039 hypothetical protein; 95.7 1.2 2.5E-05 43.7 18.1 63 111-180 120-182 (343)
33 KOG0161 Myosin class II heavy 95.6 1.9 4.2E-05 50.8 21.7 33 113-145 1476-1508(1930)
34 PRK04863 mukB cell division pr 95.5 1.7 3.7E-05 50.2 21.2 65 20-84 271-335 (1486)
35 COG1579 Zn-ribbon protein, pos 95.5 2.1 4.5E-05 40.2 18.3 64 16-86 12-75 (239)
36 PF00038 Filament: Intermediat 95.4 1.7 3.8E-05 41.0 17.8 57 107-163 75-131 (312)
37 PRK04863 mukB cell division pr 95.2 3.9 8.4E-05 47.5 22.6 82 113-194 396-480 (1486)
38 PF15619 Lebercilin: Ciliary p 95.2 1.3 2.8E-05 40.1 15.4 124 44-176 14-145 (194)
39 COG1579 Zn-ribbon protein, pos 95.2 0.73 1.6E-05 43.2 14.0 99 46-144 28-126 (239)
40 KOG1029 Endocytic adaptor prot 95.1 2.2 4.7E-05 46.1 18.6 81 109-189 481-589 (1118)
41 KOG0977 Nuclear envelope prote 94.8 0.77 1.7E-05 47.7 14.2 123 47-169 90-217 (546)
42 PF09726 Macoilin: Transmembra 94.7 6.4 0.00014 42.3 21.4 40 31-70 456-495 (697)
43 KOG0996 Structural maintenance 94.7 4.7 0.0001 45.4 20.4 153 29-181 385-553 (1293)
44 PF08614 ATG16: Autophagy prot 94.6 0.42 9E-06 42.8 10.7 66 18-83 78-143 (194)
45 PF04156 IncA: IncA protein; 94.6 2.5 5.5E-05 37.2 15.4 41 41-81 80-120 (191)
46 KOG0994 Extracellular matrix g 94.6 5.8 0.00013 44.8 20.6 35 157-191 1711-1745(1758)
47 TIGR00606 rad50 rad50. This fa 94.5 8.8 0.00019 43.9 23.1 26 40-65 756-781 (1311)
48 PF08317 Spc7: Spc7 kinetochor 94.5 5 0.00011 38.8 18.9 35 157-191 231-265 (325)
49 PF09730 BicD: Microtubule-ass 94.4 4.2 9.1E-05 43.8 19.0 144 34-188 26-181 (717)
50 PF08317 Spc7: Spc7 kinetochor 94.3 5.5 0.00012 38.5 19.8 12 180-191 279-290 (325)
51 KOG0250 DNA repair protein RAD 94.3 11 0.00025 42.1 23.0 36 154-189 420-455 (1074)
52 TIGR00606 rad50 rad50. This fa 94.3 6.4 0.00014 45.0 21.3 52 33-84 879-930 (1311)
53 PRK10884 SH3 domain-containing 94.0 1.5 3.3E-05 40.1 13.0 27 33-59 91-117 (206)
54 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.9 3.4 7.3E-05 34.8 15.4 113 24-138 13-129 (132)
55 PF09730 BicD: Microtubule-ass 93.9 3.6 7.8E-05 44.2 17.3 86 103-188 72-160 (717)
56 PF04849 HAP1_N: HAP1 N-termin 93.7 6.6 0.00014 38.2 17.4 160 29-188 76-266 (306)
57 PRK09039 hypothetical protein; 93.7 7.6 0.00016 38.1 20.3 36 109-144 125-160 (343)
58 PRK03918 chromosome segregatio 93.4 13 0.00029 40.0 23.7 22 40-61 198-219 (880)
59 PF05911 DUF869: Plant protein 93.4 2.9 6.2E-05 45.3 15.7 113 30-158 591-703 (769)
60 PF04849 HAP1_N: HAP1 N-termin 93.0 3.5 7.5E-05 40.1 14.2 70 108-177 228-304 (306)
61 KOG0996 Structural maintenance 93.0 16 0.00034 41.4 20.6 83 108-190 501-583 (1293)
62 PF09726 Macoilin: Transmembra 92.9 15 0.00033 39.5 20.1 27 104-130 549-575 (697)
63 KOG4643 Uncharacterized coiled 92.9 19 0.00041 40.3 20.7 51 34-84 400-450 (1195)
64 KOG0999 Microtubule-associated 92.8 14 0.00031 38.8 20.6 19 170-188 233-254 (772)
65 PRK11281 hypothetical protein; 92.8 21 0.00045 40.5 23.8 34 158-191 287-320 (1113)
66 KOG0250 DNA repair protein RAD 92.7 20 0.00044 40.1 20.9 67 113-179 400-466 (1074)
67 PF09304 Cortex-I_coil: Cortex 92.7 3.7 8.1E-05 34.0 11.9 44 40-83 7-50 (107)
68 TIGR01843 type_I_hlyD type I s 92.6 10 0.00023 36.7 19.3 50 34-83 129-178 (423)
69 KOG4674 Uncharacterized conser 92.5 6.9 0.00015 46.0 17.7 42 41-82 51-92 (1822)
70 PF12128 DUF3584: Protein of u 92.4 20 0.00044 40.7 21.4 24 121-144 685-708 (1201)
71 PF12325 TMF_TATA_bd: TATA ele 92.1 5.6 0.00012 33.5 12.7 31 150-180 76-106 (120)
72 TIGR01843 type_I_hlyD type I s 92.0 12 0.00027 36.2 19.7 45 35-79 137-181 (423)
73 PF14662 CCDC155: Coiled-coil 91.9 9.7 0.00021 34.7 18.0 51 33-83 6-56 (193)
74 PRK03918 chromosome segregatio 91.7 22 0.00047 38.4 22.8 32 113-144 618-649 (880)
75 PF11932 DUF3450: Protein of u 91.6 11 0.00025 34.8 15.7 76 23-98 30-105 (251)
76 KOG0999 Microtubule-associated 91.4 14 0.00031 38.7 17.0 126 14-155 68-197 (772)
77 PLN02939 transferase, transfer 91.4 24 0.00052 39.4 19.8 61 26-86 147-210 (977)
78 TIGR03007 pepcterm_ChnLen poly 91.3 18 0.00038 36.5 22.7 53 4-56 135-189 (498)
79 PF04156 IncA: IncA protein; 91.2 9.8 0.00021 33.4 15.2 23 116-138 139-161 (191)
80 KOG1003 Actin filament-coating 91.2 12 0.00026 34.3 18.9 150 33-191 23-179 (205)
81 PF00038 Filament: Intermediat 91.1 14 0.0003 34.9 23.7 67 18-84 72-138 (312)
82 PF00261 Tropomyosin: Tropomyo 91.0 13 0.00028 34.3 22.3 52 32-83 61-112 (237)
83 KOG0979 Structural maintenance 90.8 32 0.00069 38.5 19.7 82 108-189 256-344 (1072)
84 KOG0964 Structural maintenance 90.8 16 0.00035 40.6 17.4 59 27-85 663-721 (1200)
85 PF10234 Cluap1: Clusterin-ass 90.7 8.3 0.00018 36.8 13.8 62 5-67 126-187 (267)
86 PF10186 Atg14: UV radiation r 90.7 14 0.0003 34.2 17.6 22 37-58 22-43 (302)
87 KOG0994 Extracellular matrix g 90.7 21 0.00045 40.7 18.2 36 147-182 1708-1743(1758)
88 COG2433 Uncharacterized conser 90.6 5.3 0.00012 42.1 13.3 87 38-144 418-504 (652)
89 PRK02119 hypothetical protein; 90.6 0.78 1.7E-05 35.3 5.6 32 115-146 3-34 (73)
90 PF04582 Reo_sigmaC: Reovirus 90.6 0.24 5.2E-06 48.3 3.4 118 32-158 32-149 (326)
91 PF10212 TTKRSYEDQ: Predicted 90.4 11 0.00023 39.2 15.1 65 116-183 450-514 (518)
92 KOG0980 Actin-binding protein 90.3 33 0.00071 37.9 22.2 76 9-84 332-407 (980)
93 PF06818 Fez1: Fez1; InterPro 89.8 16 0.00035 33.5 14.9 53 37-89 54-106 (202)
94 COG4942 Membrane-bound metallo 89.7 25 0.00054 35.7 22.3 49 31-79 55-103 (420)
95 KOG0977 Nuclear envelope prote 89.7 19 0.0004 37.7 16.3 136 54-189 47-195 (546)
96 PF00769 ERM: Ezrin/radixin/mo 89.6 7.1 0.00015 36.5 12.3 50 30-79 7-56 (246)
97 KOG4673 Transcription factor T 89.5 24 0.00052 38.0 17.0 48 18-65 588-635 (961)
98 COG4026 Uncharacterized protei 89.4 3.3 7.1E-05 38.8 9.6 42 44-85 130-171 (290)
99 PF00769 ERM: Ezrin/radixin/mo 88.9 20 0.00044 33.5 15.3 47 37-83 7-53 (246)
100 PF04111 APG6: Autophagy prote 88.8 5.3 0.00012 38.7 11.2 59 133-191 76-134 (314)
101 PF04111 APG6: Autophagy prote 88.8 4.4 9.4E-05 39.3 10.5 84 111-194 47-130 (314)
102 PRK10929 putative mechanosensi 88.7 49 0.0011 37.7 23.8 35 158-192 267-301 (1109)
103 PRK00736 hypothetical protein; 88.5 1.3 2.7E-05 33.6 5.3 41 118-158 2-42 (68)
104 PRK10929 putative mechanosensi 88.5 30 0.00065 39.3 18.0 27 39-65 106-132 (1109)
105 PF07106 TBPIP: Tat binding pr 88.3 7.4 0.00016 33.9 10.8 61 117-177 75-137 (169)
106 TIGR03185 DNA_S_dndD DNA sulfu 88.1 38 0.00083 35.7 23.8 59 122-180 392-452 (650)
107 PRK04325 hypothetical protein; 87.9 1.7 3.7E-05 33.4 5.8 41 118-158 6-46 (74)
108 PF08614 ATG16: Autophagy prot 87.9 5.2 0.00011 35.8 9.8 37 110-146 119-155 (194)
109 KOG4674 Uncharacterized conser 87.5 71 0.0015 38.1 23.3 46 39-84 707-752 (1822)
110 KOG1853 LIS1-interacting prote 87.4 18 0.0004 34.5 13.3 107 29-139 71-182 (333)
111 PRK00295 hypothetical protein; 87.3 1.7 3.7E-05 32.9 5.3 40 119-158 3-42 (68)
112 PF15254 CCDC14: Coiled-coil d 87.1 50 0.0011 36.1 19.6 68 102-174 489-557 (861)
113 KOG3647 Predicted coiled-coil 87.0 26 0.00057 33.7 14.1 61 25-85 88-155 (338)
114 PF04102 SlyX: SlyX; InterPro 86.9 1.5 3.4E-05 33.1 4.9 28 119-146 2-29 (69)
115 PF09486 HrpB7: Bacterial type 86.7 22 0.00047 31.4 16.3 111 38-158 18-130 (158)
116 PF12808 Mto2_bdg: Micro-tubul 86.7 2.6 5.6E-05 30.6 5.7 44 12-55 6-49 (52)
117 PRK04406 hypothetical protein; 86.7 2.4 5.2E-05 32.8 6.0 41 118-158 8-48 (75)
118 PF12795 MscS_porin: Mechanose 86.7 26 0.00056 32.2 15.6 58 31-88 81-138 (240)
119 KOG0804 Cytoplasmic Zn-finger 86.3 25 0.00053 36.1 14.3 19 151-169 437-455 (493)
120 PRK11281 hypothetical protein; 86.3 12 0.00026 42.3 13.4 46 38-83 124-169 (1113)
121 PF15070 GOLGA2L5: Putative go 86.2 51 0.0011 35.1 21.9 23 125-147 199-221 (617)
122 PF15066 CAGE1: Cancer-associa 86.1 31 0.00068 35.5 14.9 50 36-85 384-433 (527)
123 KOG0995 Centromere-associated 86.0 49 0.0011 34.8 16.7 59 121-179 301-362 (581)
124 PF07798 DUF1640: Protein of u 86.0 24 0.00051 31.1 15.9 100 38-146 47-149 (177)
125 PRK02793 phi X174 lysis protei 85.9 2.6 5.6E-05 32.3 5.7 28 119-146 6-33 (72)
126 KOG0963 Transcription factor/C 85.9 34 0.00073 36.3 15.5 41 109-149 305-345 (629)
127 TIGR02680 conserved hypothetic 85.7 77 0.0017 36.8 20.1 38 46-83 280-317 (1353)
128 PF12761 End3: Actin cytoskele 85.4 21 0.00045 32.6 12.2 89 37-141 98-194 (195)
129 PF10212 TTKRSYEDQ: Predicted 85.4 22 0.00049 36.9 13.8 30 112-141 485-514 (518)
130 KOG1962 B-cell receptor-associ 85.2 13 0.00028 34.5 10.9 21 109-129 188-208 (216)
131 PF05701 WEMBL: Weak chloropla 84.9 52 0.0011 34.1 21.3 24 231-254 480-503 (522)
132 PRK10884 SH3 domain-containing 84.6 9.4 0.0002 34.9 9.8 31 151-181 134-164 (206)
133 PF04012 PspA_IM30: PspA/IM30 84.6 30 0.00065 31.1 13.4 48 38-85 26-73 (221)
134 KOG0933 Structural maintenance 84.4 77 0.0017 35.7 20.5 38 153-190 826-863 (1174)
135 COG2433 Uncharacterized conser 84.3 13 0.00028 39.4 11.6 69 113-181 435-506 (652)
136 TIGR03007 pepcterm_ChnLen poly 84.3 49 0.0011 33.3 19.1 87 4-90 169-274 (498)
137 KOG0976 Rho/Rac1-interacting s 84.2 65 0.0014 35.6 16.9 65 115-189 142-206 (1265)
138 PF09755 DUF2046: Uncharacteri 84.1 44 0.00095 32.6 19.5 34 27-60 19-52 (310)
139 PF09311 Rab5-bind: Rabaptin-l 84.1 1.3 2.8E-05 39.4 3.9 77 7-83 1-77 (181)
140 KOG1962 B-cell receptor-associ 83.9 12 0.00027 34.6 10.3 16 108-123 194-209 (216)
141 KOG4460 Nuclear pore complex, 83.6 31 0.00066 36.4 13.8 49 115-165 670-718 (741)
142 PF11180 DUF2968: Protein of u 83.4 36 0.00077 31.1 14.2 103 21-148 86-188 (192)
143 PF09789 DUF2353: Uncharacteri 83.3 48 0.001 32.5 18.3 96 47-144 14-116 (319)
144 PF14662 CCDC155: Coiled-coil 83.1 37 0.0008 31.0 22.6 32 115-146 96-127 (193)
145 PF05384 DegS: Sensor protein 82.9 33 0.00071 30.3 18.7 134 29-164 14-148 (159)
146 TIGR01005 eps_transp_fam exopo 82.5 74 0.0016 34.1 24.2 31 27-57 193-223 (754)
147 KOG0804 Cytoplasmic Zn-finger 82.5 62 0.0013 33.3 15.2 74 118-191 379-456 (493)
148 PF10473 CENP-F_leu_zip: Leuci 82.3 32 0.00069 29.8 16.1 32 54-85 8-39 (140)
149 smart00787 Spc7 Spc7 kinetocho 82.3 51 0.0011 32.0 19.0 14 129-142 247-260 (312)
150 TIGR02231 conserved hypothetic 81.0 26 0.00056 36.0 12.5 34 113-146 137-170 (525)
151 PF06120 Phage_HK97_TLTM: Tail 80.8 57 0.0012 31.7 15.9 74 116-189 83-167 (301)
152 PRK00846 hypothetical protein; 80.5 5.6 0.00012 31.1 5.7 28 119-146 11-38 (77)
153 PF15619 Lebercilin: Ciliary p 80.4 45 0.00097 30.2 16.6 20 174-193 168-187 (194)
154 KOG0976 Rho/Rac1-interacting s 80.3 1E+02 0.0022 34.2 17.4 66 15-80 93-158 (1265)
155 PF15397 DUF4618: Domain of un 80.1 56 0.0012 31.1 15.0 33 114-146 193-225 (258)
156 PF06637 PV-1: PV-1 protein (P 79.8 29 0.00062 34.9 11.6 80 2-81 298-388 (442)
157 PF04102 SlyX: SlyX; InterPro 79.7 15 0.00033 27.6 7.8 51 40-90 2-52 (69)
158 KOG4360 Uncharacterized coiled 79.5 24 0.00052 36.7 11.3 100 39-141 202-302 (596)
159 PF10267 Tmemb_cc2: Predicted 79.4 65 0.0014 32.5 14.2 42 133-175 274-317 (395)
160 PF06120 Phage_HK97_TLTM: Tail 79.3 65 0.0014 31.3 14.0 45 44-88 69-113 (301)
161 PF11559 ADIP: Afadin- and alp 78.9 40 0.00086 28.7 15.2 69 14-82 52-120 (151)
162 KOG0933 Structural maintenance 78.5 1.2E+02 0.0027 34.2 21.6 40 107-146 822-861 (1174)
163 PF01576 Myosin_tail_1: Myosin 78.3 0.68 1.5E-05 50.6 0.0 170 29-198 540-735 (859)
164 KOG0612 Rho-associated, coiled 77.7 1.4E+02 0.003 34.4 21.7 36 33-68 499-534 (1317)
165 PF12252 SidE: Dot/Icm substra 77.4 1.2E+02 0.0025 34.7 16.3 145 18-179 1004-1195(1439)
166 PF14257 DUF4349: Domain of un 77.2 41 0.00089 31.2 11.6 55 120-181 131-187 (262)
167 PF09304 Cortex-I_coil: Cortex 77.1 41 0.00089 27.9 14.3 64 22-85 3-66 (107)
168 PRK10698 phage shock protein P 77.0 61 0.0013 29.8 13.4 33 51-83 101-133 (222)
169 PRK04778 septation ring format 76.4 1E+02 0.0022 32.1 19.4 73 123-195 350-429 (569)
170 COG2900 SlyX Uncharacterized p 76.1 9 0.00019 29.6 5.5 29 118-146 5-33 (72)
171 TIGR02680 conserved hypothetic 76.0 1.6E+02 0.0035 34.2 22.8 39 151-189 923-961 (1353)
172 KOG0971 Microtubule-associated 76.0 1.4E+02 0.0031 33.5 24.9 80 118-197 329-430 (1243)
173 PF03962 Mnd1: Mnd1 family; I 76.0 59 0.0013 29.2 11.8 33 50-82 63-95 (188)
174 KOG0249 LAR-interacting protei 75.9 45 0.00097 36.2 12.4 36 109-144 218-253 (916)
175 KOG0612 Rho-associated, coiled 75.5 1.6E+02 0.0035 33.9 21.2 13 263-275 905-917 (1317)
176 TIGR03185 DNA_S_dndD DNA sulfu 75.5 1.1E+02 0.0025 32.2 16.6 32 60-91 388-419 (650)
177 PF14915 CCDC144C: CCDC144C pr 75.2 85 0.0018 30.6 19.4 65 132-196 141-205 (305)
178 PF10186 Atg14: UV radiation r 74.9 69 0.0015 29.5 17.6 11 268-278 263-273 (302)
179 PF15066 CAGE1: Cancer-associa 74.9 1E+02 0.0023 31.8 14.2 41 151-191 385-425 (527)
180 TIGR01010 BexC_CtrB_KpsE polys 74.7 85 0.0018 30.4 15.9 26 60-85 174-199 (362)
181 KOG1853 LIS1-interacting prote 74.7 82 0.0018 30.2 20.3 63 114-176 98-167 (333)
182 PRK09343 prefoldin subunit bet 74.6 49 0.0011 27.6 14.1 44 40-83 5-48 (121)
183 PF13851 GAS: Growth-arrest sp 74.4 68 0.0015 29.1 20.5 53 14-66 27-79 (201)
184 KOG0288 WD40 repeat protein Ti 73.5 1.1E+02 0.0024 31.2 16.2 54 32-85 10-63 (459)
185 PF02183 HALZ: Homeobox associ 73.4 21 0.00045 25.0 6.4 40 105-144 3-42 (45)
186 PRK10803 tol-pal system protei 73.1 15 0.00032 34.7 7.5 51 34-84 39-89 (263)
187 PF07227 DUF1423: Protein of u 73.0 45 0.00097 34.1 11.2 106 49-159 336-443 (446)
188 PF01920 Prefoldin_2: Prefoldi 72.8 43 0.00094 26.1 11.2 94 47-144 3-99 (106)
189 PF12777 MT: Microtubule-bindi 72.7 10 0.00022 37.0 6.5 83 113-195 227-309 (344)
190 PF07106 TBPIP: Tat binding pr 72.5 64 0.0014 28.0 11.4 34 50-83 73-106 (169)
191 TIGR01005 eps_transp_fam exopo 71.8 1.5E+02 0.0032 31.8 20.0 23 166-188 372-394 (754)
192 PF10481 CENP-F_N: Cenp-F N-te 71.8 1E+02 0.0022 29.9 13.3 24 121-144 109-132 (307)
193 TIGR02338 gimC_beta prefoldin, 71.7 53 0.0011 26.7 13.7 38 45-82 6-43 (110)
194 PF05701 WEMBL: Weak chloropla 71.4 1.3E+02 0.0029 31.1 23.2 23 43-65 212-234 (522)
195 KOG0982 Centrosomal protein Nu 71.4 1.3E+02 0.0028 30.9 15.7 30 116-145 355-384 (502)
196 TIGR01000 bacteriocin_acc bact 71.4 1.2E+02 0.0026 30.6 20.0 69 123-191 238-312 (457)
197 PF04012 PspA_IM30: PspA/IM30 71.2 76 0.0017 28.5 11.5 50 33-82 89-138 (221)
198 TIGR03017 EpsF chain length de 71.1 1.1E+02 0.0024 30.2 23.1 80 4-83 145-235 (444)
199 PRK02793 phi X174 lysis protei 71.1 41 0.0009 25.6 8.3 47 33-79 6-52 (72)
200 PF15035 Rootletin: Ciliary ro 70.8 80 0.0017 28.4 14.7 37 36-72 3-39 (182)
201 KOG0980 Actin-binding protein 70.6 1.8E+02 0.0039 32.4 22.8 66 18-83 369-437 (980)
202 PRK00846 hypothetical protein; 70.5 38 0.00082 26.5 8.0 53 36-88 7-59 (77)
203 KOG4637 Adaptor for phosphoino 70.2 1.3E+02 0.0028 30.5 17.8 56 116-174 232-287 (464)
204 PF09738 DUF2051: Double stran 70.1 1E+02 0.0022 30.0 12.6 64 59-138 108-171 (302)
205 PF05557 MAD: Mitotic checkpoi 70.0 39 0.00085 36.2 10.7 81 47-134 501-586 (722)
206 PF10481 CENP-F_N: Cenp-F N-te 69.7 1.1E+02 0.0024 29.6 14.3 71 114-191 60-130 (307)
207 PRK02119 hypothetical protein; 69.6 36 0.00077 26.1 7.6 46 41-86 8-53 (73)
208 PF02050 FliJ: Flagellar FliJ 69.5 51 0.0011 25.6 14.9 82 54-146 3-84 (123)
209 PF07716 bZIP_2: Basic region 69.5 21 0.00044 25.4 5.9 35 109-143 20-54 (54)
210 KOG1899 LAR transmembrane tyro 69.5 1.7E+02 0.0037 31.6 15.0 48 37-84 169-216 (861)
211 PRK13729 conjugal transfer pil 69.3 26 0.00056 36.1 8.7 55 32-86 66-120 (475)
212 PRK04406 hypothetical protein; 68.3 37 0.0008 26.2 7.5 44 42-85 11-54 (75)
213 PRK15422 septal ring assembly 68.2 57 0.0012 25.7 10.5 25 109-133 48-72 (79)
214 PF04582 Reo_sigmaC: Reovirus 67.8 9.9 0.00021 37.3 5.2 76 113-195 76-151 (326)
215 PF05622 HOOK: HOOK protein; 67.4 1.8 3.8E-05 46.2 0.0 19 66-84 263-281 (713)
216 TIGR02977 phageshock_pspA phag 67.2 1E+02 0.0022 28.1 13.3 47 39-85 28-74 (219)
217 TIGR03752 conj_TIGR03752 integ 67.0 82 0.0018 32.5 11.7 29 57-85 67-95 (472)
218 PF05377 FlaC_arch: Flagella a 66.8 25 0.00054 25.8 5.9 40 36-75 1-40 (55)
219 KOG0239 Kinesin (KAR3 subfamil 66.2 2E+02 0.0042 31.1 15.7 26 250-283 377-402 (670)
220 PF12925 APP_E2: E2 domain of 66.2 79 0.0017 28.9 10.3 81 96-189 12-100 (193)
221 KOG0249 LAR-interacting protei 66.0 2.1E+02 0.0046 31.4 15.6 35 108-142 224-258 (916)
222 PF08581 Tup_N: Tup N-terminal 65.9 44 0.00095 26.1 7.5 24 122-145 26-49 (79)
223 PF10267 Tmemb_cc2: Predicted 65.8 1.6E+02 0.0034 29.8 17.7 23 245-268 361-383 (395)
224 PF10226 DUF2216: Uncharacteri 65.7 1.1E+02 0.0024 28.0 14.7 57 28-84 16-76 (195)
225 PRK09841 cryptic autophosphory 65.4 2E+02 0.0043 30.9 18.3 26 60-85 271-296 (726)
226 PF06005 DUF904: Protein of un 65.2 60 0.0013 24.9 8.6 48 36-83 5-52 (72)
227 PF05667 DUF812: Protein of un 64.8 2E+02 0.0043 30.6 23.8 77 115-191 513-592 (594)
228 PRK00736 hypothetical protein; 64.2 44 0.00096 25.2 7.1 31 52-82 15-45 (68)
229 TIGR03495 phage_LysB phage lys 64.2 93 0.002 26.8 9.9 65 116-180 21-92 (135)
230 KOG4571 Activating transcripti 64.1 18 0.00038 35.0 6.0 38 107-144 248-285 (294)
231 PRK13729 conjugal transfer pil 63.9 36 0.00077 35.1 8.5 18 155-172 103-120 (475)
232 PF04201 TPD52: Tumour protein 63.6 22 0.00049 31.5 6.1 87 103-189 25-114 (162)
233 PF07926 TPR_MLP1_2: TPR/MLP1/ 63.6 88 0.0019 26.2 18.6 24 166-189 108-131 (132)
234 PF10458 Val_tRNA-synt_C: Valy 63.4 58 0.0013 24.1 8.5 27 121-147 4-30 (66)
235 PRK00295 hypothetical protein; 63.4 43 0.00093 25.3 6.9 40 45-84 8-47 (68)
236 PF07851 TMPIT: TMPIT-like pro 62.9 1.6E+02 0.0035 29.0 13.2 44 240-283 122-165 (330)
237 PF06785 UPF0242: Uncharacteri 62.7 1.7E+02 0.0037 29.2 15.8 37 48-84 84-120 (401)
238 TIGR03495 phage_LysB phage lys 62.6 1E+02 0.0022 26.6 10.8 30 54-83 24-53 (135)
239 PRK12704 phosphodiesterase; Pr 62.5 2E+02 0.0043 29.9 16.5 11 259-269 342-352 (520)
240 KOG0946 ER-Golgi vesicle-tethe 62.4 2.6E+02 0.0056 31.1 20.3 39 107-145 737-775 (970)
241 PRK04325 hypothetical protein; 61.9 55 0.0012 25.1 7.4 40 45-84 12-51 (74)
242 PRK15178 Vi polysaccharide exp 61.6 1.9E+02 0.0042 29.5 18.4 82 63-146 249-339 (434)
243 PF10458 Val_tRNA-synt_C: Valy 60.6 57 0.0012 24.1 7.1 29 62-90 3-31 (66)
244 PF11932 DUF3450: Protein of u 60.4 1.4E+02 0.0031 27.5 12.4 31 134-179 130-162 (251)
245 KOG0964 Structural maintenance 60.4 3E+02 0.0065 31.3 21.9 54 35-88 265-318 (1200)
246 KOG0995 Centromere-associated 60.3 2.3E+02 0.0051 30.0 16.7 38 238-275 516-558 (581)
247 KOG0239 Kinesin (KAR3 subfamil 59.6 2E+02 0.0043 31.1 13.4 13 157-169 284-296 (670)
248 PF01576 Myosin_tail_1: Myosin 59.5 3 6.6E-05 45.6 0.0 50 125-174 261-310 (859)
249 PF06818 Fez1: Fez1; InterPro 59.4 1.5E+02 0.0032 27.4 15.1 41 106-146 65-105 (202)
250 COG4026 Uncharacterized protei 59.1 1.6E+02 0.0035 27.8 12.4 27 118-144 174-200 (290)
251 PRK10636 putative ABC transpor 58.7 74 0.0016 33.6 10.1 73 116-189 558-631 (638)
252 PRK13169 DNA replication intia 58.3 91 0.002 25.9 8.5 53 30-82 3-55 (110)
253 KOG0018 Structural maintenance 58.1 3.3E+02 0.0072 31.1 14.9 42 25-66 210-251 (1141)
254 PF06156 DUF972: Protein of un 57.7 99 0.0022 25.4 8.7 54 30-83 3-56 (107)
255 COG3883 Uncharacterized protei 57.7 1.8E+02 0.0039 27.9 20.5 53 32-84 42-94 (265)
256 COG1842 PspA Phage shock prote 57.6 1.6E+02 0.0035 27.3 13.4 44 40-83 29-72 (225)
257 PRK11519 tyrosine kinase; Prov 57.6 2.7E+02 0.0059 29.9 17.1 26 60-85 271-296 (719)
258 KOG1029 Endocytic adaptor prot 57.2 3.1E+02 0.0068 30.5 19.8 32 113-144 443-474 (1118)
259 PF05557 MAD: Mitotic checkpoi 57.2 2.6E+02 0.0055 30.1 14.0 30 36-65 504-533 (722)
260 PRK10246 exonuclease subunit S 56.9 3.3E+02 0.0072 30.7 24.0 70 107-179 777-852 (1047)
261 PF10805 DUF2730: Protein of u 56.5 51 0.0011 26.8 6.7 25 124-148 38-63 (106)
262 COG4985 ABC-type phosphate tra 55.9 1.7E+02 0.0036 27.9 10.7 26 53-78 161-186 (289)
263 PF13514 AAA_27: AAA domain 55.9 3.5E+02 0.0076 30.6 22.5 33 114-146 743-775 (1111)
264 PF03148 Tektin: Tektin family 55.9 2.2E+02 0.0047 28.3 19.2 61 20-80 236-296 (384)
265 KOG1899 LAR transmembrane tyro 55.8 2.2E+02 0.0048 30.8 12.6 99 34-142 110-216 (861)
266 PF08826 DMPK_coil: DMPK coile 55.7 84 0.0018 23.4 9.2 30 18-51 5-34 (61)
267 PF14712 Snapin_Pallidin: Snap 55.3 96 0.0021 24.0 8.9 25 109-133 66-90 (92)
268 KOG0288 WD40 repeat protein Ti 54.9 1.7E+02 0.0037 29.9 11.3 20 37-56 8-27 (459)
269 PF04899 MbeD_MobD: MbeD/MobD 54.6 96 0.0021 23.8 7.6 43 40-82 19-61 (70)
270 PF13870 DUF4201: Domain of un 54.0 1.5E+02 0.0033 25.8 18.7 72 109-191 93-173 (177)
271 PF03961 DUF342: Protein of un 53.0 1.3E+02 0.0028 30.3 10.4 78 111-189 331-408 (451)
272 PF09789 DUF2353: Uncharacteri 53.0 2.4E+02 0.0051 27.8 16.0 36 49-84 72-107 (319)
273 PF05529 Bap31: B-cell recepto 52.8 1E+02 0.0022 27.2 8.7 34 113-146 153-186 (192)
274 PF11180 DUF2968: Protein of u 52.7 1.9E+02 0.004 26.5 12.8 83 31-129 101-183 (192)
275 TIGR02449 conserved hypothetic 52.6 1E+02 0.0022 23.4 8.2 51 32-82 11-61 (65)
276 cd00632 Prefoldin_beta Prefold 52.5 1.2E+02 0.0026 24.3 13.2 35 48-82 5-39 (105)
277 PF12795 MscS_porin: Mechanose 52.4 1.9E+02 0.0041 26.5 17.5 146 33-181 36-210 (240)
278 COG3883 Uncharacterized protei 52.1 2.2E+02 0.0048 27.2 17.8 69 16-84 33-101 (265)
279 KOG4360 Uncharacterized coiled 51.8 2E+02 0.0044 30.2 11.4 28 150-177 276-303 (596)
280 PF14197 Cep57_CLD_2: Centroso 51.8 1E+02 0.0023 23.3 10.0 30 109-138 35-64 (69)
281 KOG3457 Sec61 protein transloc 51.5 12 0.00026 29.9 2.2 16 260-275 68-83 (88)
282 PF12777 MT: Microtubule-bindi 51.3 1.2E+02 0.0025 29.6 9.5 7 151-157 300-306 (344)
283 PF08826 DMPK_coil: DMPK coile 51.2 1E+02 0.0022 23.0 9.7 50 14-63 11-60 (61)
284 PF13874 Nup54: Nucleoporin co 51.0 1.5E+02 0.0032 25.2 9.0 52 33-84 70-121 (141)
285 COG3074 Uncharacterized protei 50.2 1.2E+02 0.0026 23.6 10.3 19 62-80 24-42 (79)
286 COG2900 SlyX Uncharacterized p 50.2 1.2E+02 0.0026 23.5 8.2 54 30-83 3-56 (72)
287 KOG3478 Prefoldin subunit 6, K 49.9 1.6E+02 0.0034 24.8 13.3 98 43-144 6-106 (120)
288 PF06716 DUF1201: Protein of u 49.9 28 0.0006 24.9 3.5 30 260-289 17-48 (54)
289 PF04899 MbeD_MobD: MbeD/MobD 49.2 1.2E+02 0.0026 23.3 8.1 51 32-82 18-68 (70)
290 PF10205 KLRAQ: Predicted coil 48.8 92 0.002 25.7 7.0 39 153-191 23-61 (102)
291 PF02841 GBP_C: Guanylate-bind 48.6 1.9E+02 0.0042 27.4 10.4 109 31-141 179-297 (297)
292 TIGR03017 EpsF chain length de 48.4 2.8E+02 0.0061 27.3 20.0 23 166-188 338-360 (444)
293 COG3096 MukB Uncharacterized p 48.3 4.3E+02 0.0094 29.5 16.7 47 113-159 1079-1134(1480)
294 PF05010 TACC: Transforming ac 48.3 2.2E+02 0.0048 26.1 20.4 122 36-176 70-195 (207)
295 PF03962 Mnd1: Mnd1 family; I 48.2 2.1E+02 0.0044 25.7 10.4 64 113-177 68-131 (188)
296 PF05622 HOOK: HOOK protein; 48.0 6 0.00013 42.3 0.0 51 33-83 457-515 (713)
297 PF04880 NUDE_C: NUDE protein, 48.0 36 0.00077 30.3 4.9 14 124-137 34-47 (166)
298 PRK00106 hypothetical protein; 48.0 3.6E+02 0.0077 28.4 20.8 7 2-8 29-35 (535)
299 PF02403 Seryl_tRNA_N: Seryl-t 48.0 96 0.0021 24.7 7.1 59 27-85 35-96 (108)
300 PF13870 DUF4201: Domain of un 47.5 1.9E+02 0.0042 25.2 15.4 52 33-84 75-126 (177)
301 PF05266 DUF724: Protein of un 47.2 2.2E+02 0.0047 25.7 13.4 60 26-85 84-146 (190)
302 COG4942 Membrane-bound metallo 47.2 3.3E+02 0.0072 27.8 18.8 40 153-192 193-232 (420)
303 PF07334 IFP_35_N: Interferon- 46.6 41 0.00089 26.3 4.4 27 117-143 3-29 (76)
304 KOG0163 Myosin class VI heavy 46.6 4.6E+02 0.01 29.3 15.1 23 150-178 973-995 (1259)
305 PF10805 DUF2730: Protein of u 46.4 1.6E+02 0.0034 23.9 8.2 52 110-161 38-91 (106)
306 PF08657 DASH_Spc34: DASH comp 46.3 1.2E+02 0.0027 28.7 8.5 36 32-67 177-212 (259)
307 COG4372 Uncharacterized protei 46.0 3.5E+02 0.0075 27.7 22.5 57 28-84 116-172 (499)
308 TIGR03752 conj_TIGR03752 integ 45.8 3E+02 0.0065 28.5 11.6 40 46-85 63-102 (472)
309 PF10498 IFT57: Intra-flagella 45.4 3.2E+02 0.0069 27.2 14.0 57 27-83 251-307 (359)
310 PF15397 DUF4618: Domain of un 44.7 2.9E+02 0.0062 26.4 18.1 133 30-173 8-144 (258)
311 COG1340 Uncharacterized archae 44.5 3.1E+02 0.0067 26.7 23.8 41 151-191 202-242 (294)
312 PF08172 CASP_C: CASP C termin 44.5 1.2E+02 0.0026 28.5 8.1 54 58-134 81-134 (248)
313 PRK10869 recombination and rep 44.4 2.8E+02 0.0062 28.9 11.6 30 149-178 341-370 (553)
314 TIGR03319 YmdA_YtgF conserved 44.3 3.9E+02 0.0084 27.8 16.4 12 258-269 335-346 (514)
315 PF06005 DUF904: Protein of un 43.8 1.5E+02 0.0032 22.7 11.2 29 53-81 8-36 (72)
316 COG0419 SbcC ATPase involved i 43.8 4.9E+02 0.011 28.8 22.7 37 152-188 406-442 (908)
317 PF08537 NBP1: Fungal Nap bind 43.6 97 0.0021 30.5 7.4 49 35-83 175-223 (323)
318 PRK01203 prefoldin subunit alp 43.5 2.1E+02 0.0046 24.5 11.0 79 105-183 5-121 (130)
319 PF04201 TPD52: Tumour protein 43.5 36 0.00079 30.2 4.2 38 121-158 29-66 (162)
320 PF01166 TSC22: TSC-22/dip/bun 43.5 56 0.0012 24.3 4.5 26 121-146 21-46 (59)
321 PF10224 DUF2205: Predicted co 43.4 1.5E+02 0.0032 23.3 7.1 40 44-83 18-57 (80)
322 PF15188 CCDC-167: Coiled-coil 43.1 1.7E+02 0.0037 23.3 7.5 58 122-179 6-66 (85)
323 KOG3990 Uncharacterized conser 42.9 96 0.0021 29.7 7.0 53 116-168 227-282 (305)
324 PRK13182 racA polar chromosome 42.5 2.5E+02 0.0054 25.0 9.5 22 113-134 124-145 (175)
325 PF06785 UPF0242: Uncharacteri 42.3 3.7E+02 0.0079 26.9 14.6 19 65-83 87-105 (401)
326 PF06428 Sec2p: GDP/GTP exchan 42.3 24 0.00052 28.8 2.7 28 57-84 2-29 (100)
327 PRK09841 cryptic autophosphory 42.2 4.7E+02 0.01 28.1 18.6 29 29-57 268-296 (726)
328 PF12329 TMF_DNA_bd: TATA elem 41.8 1.6E+02 0.0034 22.5 8.0 49 17-72 22-70 (74)
329 PF10498 IFT57: Intra-flagella 41.7 3.7E+02 0.0079 26.7 13.9 61 18-79 197-264 (359)
330 KOG2264 Exostosin EXT1L [Signa 41.6 3E+02 0.0066 29.5 11.0 53 32-84 97-149 (907)
331 PRK10698 phage shock protein P 41.6 2.8E+02 0.0061 25.4 13.3 45 40-84 29-73 (222)
332 PRK14127 cell division protein 41.2 1.9E+02 0.0041 24.0 7.8 33 113-145 36-68 (109)
333 PRK04778 septation ring format 41.0 4.4E+02 0.0096 27.5 23.2 49 36-84 318-369 (569)
334 TIGR02977 phageshock_pspA phag 40.7 2.8E+02 0.0061 25.1 14.2 45 36-80 93-137 (219)
335 KOG4005 Transcription factor X 40.3 1.3E+02 0.0028 28.7 7.4 23 157-179 115-137 (292)
336 COG1340 Uncharacterized archae 40.3 3.6E+02 0.0078 26.3 20.4 39 131-169 110-151 (294)
337 PF14817 HAUS5: HAUS augmin-li 40.3 5E+02 0.011 27.9 16.7 74 107-191 358-431 (632)
338 PF05911 DUF869: Plant protein 40.2 5.5E+02 0.012 28.3 20.9 152 18-180 593-757 (769)
339 PF04859 DUF641: Plant protein 39.9 1.4E+02 0.0029 25.7 7.0 51 34-84 79-129 (131)
340 PF03915 AIP3: Actin interacti 39.6 4.3E+02 0.0093 27.0 13.9 59 109-167 255-317 (424)
341 PRK01156 chromosome segregatio 39.6 5.4E+02 0.012 28.1 22.6 33 52-84 412-444 (895)
342 KOG0962 DNA repair protein RAD 39.5 6.9E+02 0.015 29.3 22.4 93 27-146 201-293 (1294)
343 PF10146 zf-C4H2: Zinc finger- 39.3 3.2E+02 0.007 25.4 14.1 26 121-146 81-107 (230)
344 PF09738 DUF2051: Double stran 39.0 2.1E+02 0.0046 27.8 9.1 21 170-190 140-160 (302)
345 PF04912 Dynamitin: Dynamitin 39.0 3.9E+02 0.0086 26.4 14.1 24 30-53 204-227 (388)
346 COG3524 KpsE Capsule polysacch 38.7 4E+02 0.0088 26.4 15.6 152 118-281 183-366 (372)
347 PF06160 EzrA: Septation ring 38.6 4.8E+02 0.01 27.3 17.9 72 19-90 363-434 (560)
348 PF09755 DUF2046: Uncharacteri 38.6 3.9E+02 0.0085 26.2 20.9 38 151-188 165-203 (310)
349 PF15188 CCDC-167: Coiled-coil 38.5 2E+02 0.0044 22.9 8.1 26 109-134 38-63 (85)
350 KOG3091 Nuclear pore complex, 38.2 3.5E+02 0.0075 28.3 10.7 46 25-70 352-397 (508)
351 PF05008 V-SNARE: Vesicle tran 38.0 1.7E+02 0.0037 21.8 7.7 37 121-157 25-62 (79)
352 PF10211 Ax_dynein_light: Axon 37.4 3E+02 0.0066 24.6 15.3 33 44-76 122-154 (189)
353 KOG0243 Kinesin-like protein [ 37.4 6.8E+02 0.015 28.6 15.3 10 167-176 553-562 (1041)
354 PF04859 DUF641: Plant protein 37.2 2.7E+02 0.0058 23.9 12.6 49 110-158 83-131 (131)
355 PF09602 PhaP_Bmeg: Polyhydrox 36.9 3.1E+02 0.0067 24.5 15.0 62 118-179 82-152 (165)
356 KOG3894 SNARE protein Syntaxin 36.6 43 0.00093 32.8 3.8 33 248-280 283-315 (316)
357 PF14992 TMCO5: TMCO5 family 36.6 4E+02 0.0087 25.8 20.1 23 116-138 118-140 (280)
358 PF04880 NUDE_C: NUDE protein, 36.6 69 0.0015 28.5 4.9 22 51-72 2-23 (166)
359 PF11471 Sugarporin_N: Maltopo 36.5 57 0.0012 24.2 3.7 27 119-145 30-56 (60)
360 PF07058 Myosin_HC-like: Myosi 36.4 4.3E+02 0.0094 26.1 13.6 43 38-80 3-52 (351)
361 PF02403 Seryl_tRNA_N: Seryl-t 36.4 1.9E+02 0.0042 22.9 7.2 31 109-139 69-99 (108)
362 PRK15422 septal ring assembly 36.2 2.2E+02 0.0047 22.5 10.9 23 108-130 54-76 (79)
363 PF04977 DivIC: Septum formati 36.2 1E+02 0.0023 22.6 5.3 26 121-146 24-49 (80)
364 PF12329 TMF_DNA_bd: TATA elem 36.0 2E+02 0.0043 22.0 10.4 28 54-81 3-30 (74)
365 PF09753 Use1: Membrane fusion 36.0 84 0.0018 29.1 5.6 15 239-253 209-223 (251)
366 PRK00888 ftsB cell division pr 35.9 1.2E+02 0.0025 24.8 5.8 29 113-141 33-61 (105)
367 PF13815 Dzip-like_N: Iguana/D 35.7 1.1E+02 0.0023 25.3 5.6 36 109-144 82-117 (118)
368 KOG0978 E3 ubiquitin ligase in 35.5 6.2E+02 0.013 27.6 22.7 10 268-277 661-670 (698)
369 PF12761 End3: Actin cytoskele 35.4 2.4E+02 0.0052 25.8 8.2 26 151-176 169-194 (195)
370 PF10779 XhlA: Haemolysin XhlA 35.1 1.9E+02 0.0042 21.6 7.9 45 32-76 3-47 (71)
371 PF13514 AAA_27: AAA domain 34.9 7.2E+02 0.016 28.2 24.0 38 109-146 891-928 (1111)
372 smart00340 HALZ homeobox assoc 34.9 1.3E+02 0.0027 21.1 4.8 31 105-142 3-33 (44)
373 KOG0240 Kinesin (SMY1 subfamil 34.7 5.6E+02 0.012 27.4 11.6 40 41-80 413-452 (607)
374 TIGR02894 DNA_bind_RsfA transc 34.6 1.9E+02 0.0041 25.7 7.2 38 42-79 104-141 (161)
375 PF14193 DUF4315: Domain of un 34.5 1.2E+02 0.0026 23.9 5.4 28 109-136 3-30 (83)
376 COG3879 Uncharacterized protei 34.4 1.3E+02 0.0027 28.6 6.5 23 113-135 56-78 (247)
377 PRK00888 ftsB cell division pr 34.2 1.1E+02 0.0025 24.8 5.5 27 50-76 35-61 (105)
378 PF06156 DUF972: Protein of un 34.1 2.1E+02 0.0046 23.5 7.1 48 42-89 8-55 (107)
379 KOG4010 Coiled-coil protein TP 34.1 1.3E+02 0.0028 27.6 6.1 29 106-134 43-71 (208)
380 PF10779 XhlA: Haemolysin XhlA 34.0 1.3E+02 0.0028 22.5 5.4 20 121-140 6-25 (71)
381 PRK11519 tyrosine kinase; Prov 33.8 6.3E+02 0.014 27.2 16.6 28 29-56 268-295 (719)
382 KOG4001 Axonemal dynein light 33.7 4E+02 0.0087 24.9 11.5 25 60-84 189-213 (259)
383 COG0216 PrfA Protein chain rel 33.6 5E+02 0.011 26.0 11.8 38 33-70 5-47 (363)
384 PF02994 Transposase_22: L1 tr 33.5 70 0.0015 31.7 4.9 132 23-159 54-189 (370)
385 PF04912 Dynamitin: Dynamitin 33.3 4.9E+02 0.011 25.7 12.9 58 26-83 206-281 (388)
386 PF10146 zf-C4H2: Zinc finger- 33.2 4.1E+02 0.0088 24.8 12.7 18 127-144 52-69 (230)
387 KOG0018 Structural maintenance 33.1 8.1E+02 0.017 28.2 20.2 31 151-181 404-434 (1141)
388 TIGR02894 DNA_bind_RsfA transc 33.1 1.4E+02 0.0031 26.5 6.2 31 113-143 103-133 (161)
389 PF10168 Nup88: Nuclear pore c 33.0 6.7E+02 0.015 27.3 20.0 33 133-165 612-648 (717)
390 PRK13169 DNA replication intia 32.9 2E+02 0.0044 23.9 6.8 46 43-88 9-54 (110)
391 PF08409 DUF1736: Domain of un 32.8 53 0.0011 25.7 3.1 28 255-282 21-48 (80)
392 PF11365 DUF3166: Protein of u 32.8 2.7E+02 0.0059 22.6 9.8 83 45-134 4-89 (96)
393 PF13942 Lipoprotein_20: YfhG 32.4 1.8E+02 0.004 26.2 6.8 45 18-62 113-157 (179)
394 KOG2991 Splicing regulator [RN 32.1 4.8E+02 0.01 25.3 15.2 21 109-129 179-199 (330)
395 KOG2129 Uncharacterized conser 31.9 5.9E+02 0.013 26.3 16.5 22 30-51 185-206 (552)
396 PRK14011 prefoldin subunit alp 31.8 3.4E+02 0.0073 23.5 11.7 28 118-145 92-119 (144)
397 PRK10636 putative ABC transpor 31.8 4.8E+02 0.01 27.6 11.0 69 63-140 563-631 (638)
398 PF10241 KxDL: Uncharacterized 31.7 2.5E+02 0.0055 22.0 10.5 63 6-71 17-79 (88)
399 TIGR01010 BexC_CtrB_KpsE polys 31.7 4.8E+02 0.01 25.2 21.4 8 172-179 280-287 (362)
400 PRK13182 racA polar chromosome 31.6 3.5E+02 0.0077 24.1 8.6 27 35-61 85-111 (175)
401 KOG4657 Uncharacterized conser 31.6 4.5E+02 0.0098 24.8 12.5 36 109-144 88-123 (246)
402 PLN02939 transferase, transfer 31.5 8.2E+02 0.018 27.8 19.8 55 9-67 235-289 (977)
403 PF10224 DUF2205: Predicted co 31.4 2.6E+02 0.0056 22.0 7.4 46 39-84 20-65 (80)
404 PF07200 Mod_r: Modifier of ru 31.3 3.2E+02 0.0069 23.0 8.4 79 32-110 31-111 (150)
405 PF06770 Arif-1: Actin-rearran 31.2 64 0.0014 29.5 3.9 30 250-279 163-192 (196)
406 cd00890 Prefoldin Prefoldin is 31.1 2.8E+02 0.006 22.3 11.6 35 110-144 90-124 (129)
407 COG3879 Uncharacterized protei 30.9 2.7E+02 0.0059 26.4 8.0 51 35-85 50-104 (247)
408 PF04977 DivIC: Septum formati 30.8 1.9E+02 0.0041 21.2 5.9 27 49-75 24-50 (80)
409 TIGR01000 bacteriocin_acc bact 30.8 5.6E+02 0.012 25.7 15.9 16 109-124 245-260 (457)
410 PF04380 BMFP: Membrane fusoge 30.6 94 0.002 24.0 4.2 28 107-134 50-77 (79)
411 COG5293 Predicted ATPase [Gene 30.4 2.1E+02 0.0046 29.8 7.6 70 66-142 338-407 (591)
412 PF07111 HCR: Alpha helical co 30.2 7.6E+02 0.017 27.0 23.1 46 35-80 394-439 (739)
413 PF05103 DivIVA: DivIVA protei 30.1 69 0.0015 26.1 3.7 53 126-178 30-82 (131)
414 PF05700 BCAS2: Breast carcino 30.1 4.3E+02 0.0093 24.1 12.8 28 118-145 186-213 (221)
415 PRK14127 cell division protein 30.0 3.2E+02 0.0069 22.7 7.5 31 57-87 38-68 (109)
416 PF04799 Fzo_mitofusin: fzo-li 29.7 4.2E+02 0.009 23.8 9.0 23 17-39 74-96 (171)
417 PF05384 DegS: Sensor protein 29.6 3.9E+02 0.0086 23.5 14.5 36 50-85 28-63 (159)
418 KOG4603 TBP-1 interacting prot 29.3 3.3E+02 0.0071 24.8 7.8 37 109-145 81-117 (201)
419 PF05529 Bap31: B-cell recepto 29.3 4E+02 0.0086 23.4 9.5 56 121-176 118-181 (192)
420 KOG4673 Transcription factor T 29.2 8.1E+02 0.018 27.0 21.7 89 107-195 530-630 (961)
421 KOG2391 Vacuolar sorting prote 28.9 5.4E+02 0.012 25.7 9.9 67 8-74 207-278 (365)
422 PF13118 DUF3972: Protein of u 28.5 1.9E+02 0.004 24.8 5.9 38 37-74 87-124 (126)
423 COG1730 GIM5 Predicted prefold 28.4 4E+02 0.0086 23.2 12.0 41 43-83 7-47 (145)
424 COG3206 GumC Uncharacterized p 28.4 6.2E+02 0.013 25.4 13.2 113 37-164 287-402 (458)
425 COG5570 Uncharacterized small 28.3 1.2E+02 0.0026 22.2 4.1 24 33-56 3-26 (57)
426 KOG0243 Kinesin-like protein [ 27.9 9.6E+02 0.021 27.5 17.6 66 13-78 447-512 (1041)
427 PF02185 HR1: Hr1 repeat; Int 27.9 2E+02 0.0043 21.3 5.5 52 34-85 10-62 (70)
428 PF15456 Uds1: Up-regulated Du 27.6 3.7E+02 0.0081 22.6 9.0 67 18-85 26-110 (124)
429 PF14988 DUF4515: Domain of un 27.6 3.6E+02 0.0079 24.6 8.2 68 116-183 6-74 (206)
430 COG4467 Regulator of replicati 27.5 2.4E+02 0.0052 23.6 6.2 42 154-195 13-54 (114)
431 KOG4552 Vitamin-D-receptor int 27.4 5.2E+02 0.011 24.2 11.3 30 117-146 70-99 (272)
432 KOG2257 N-acetylglucosaminyltr 27.1 56 0.0012 28.2 2.6 30 261-290 11-40 (135)
433 PF12072 DUF3552: Domain of un 27.0 4.6E+02 0.01 23.5 15.1 45 25-69 54-98 (201)
434 KOG4074 Leucine zipper nuclear 27.0 1.8E+02 0.0038 28.7 6.2 55 132-189 141-196 (383)
435 PLN02943 aminoacyl-tRNA ligase 26.8 2.9E+02 0.0062 31.0 8.7 28 120-147 888-915 (958)
436 TIGR00634 recN DNA repair prot 26.8 7.3E+02 0.016 25.7 14.3 14 6-19 225-238 (563)
437 KOG0946 ER-Golgi vesicle-tethe 26.8 9.4E+02 0.02 27.0 19.3 31 115-145 800-830 (970)
438 TIGR03545 conserved hypothetic 26.6 5.4E+02 0.012 27.1 10.2 39 124-163 167-205 (555)
439 COG1382 GimC Prefoldin, chaper 26.5 4E+02 0.0086 22.5 13.5 39 44-82 8-46 (119)
440 PF14915 CCDC144C: CCDC144C pr 26.4 6.2E+02 0.013 24.8 17.9 22 125-146 218-239 (305)
441 PF14992 TMCO5: TMCO5 family 26.3 6E+02 0.013 24.6 10.5 29 151-179 111-139 (280)
442 PRK11578 macrolide transporter 26.2 6E+02 0.013 24.5 10.0 50 35-84 130-179 (370)
443 PF12240 Angiomotin_C: Angiomo 26.0 5.3E+02 0.012 23.8 15.0 27 151-177 138-164 (205)
444 KOG4593 Mitotic checkpoint pro 25.6 9.1E+02 0.02 26.4 21.5 67 18-84 127-193 (716)
445 PF08606 Prp19: Prp19/Pso4-lik 25.5 2.4E+02 0.0051 21.8 5.5 23 124-146 11-33 (70)
446 TIGR02449 conserved hypothetic 25.5 3E+02 0.0065 20.8 8.7 33 51-83 2-34 (65)
447 PF09787 Golgin_A5: Golgin sub 25.5 4.9E+02 0.011 26.8 9.6 39 108-146 275-313 (511)
448 TIGR02231 conserved hypothetic 24.8 7.6E+02 0.017 25.2 12.9 84 108-191 72-173 (525)
449 COG1842 PspA Phage shock prote 24.6 5.7E+02 0.012 23.7 14.3 15 68-82 29-43 (225)
450 PF03961 DUF342: Protein of un 24.5 7.3E+02 0.016 24.9 11.1 31 110-140 378-408 (451)
451 TIGR02473 flagell_FliJ flagell 24.3 3.9E+02 0.0085 21.7 15.0 25 121-145 75-99 (141)
452 PF07889 DUF1664: Protein of u 24.2 4.5E+02 0.0097 22.4 13.2 25 43-67 37-61 (126)
453 PF06305 DUF1049: Protein of u 24.2 91 0.002 22.5 3.0 21 121-141 48-68 (68)
454 KOG4010 Coiled-coil protein TP 24.1 1.3E+02 0.0027 27.6 4.4 37 122-158 45-81 (208)
455 KOG0639 Transducin-like enhanc 24.1 2.6E+02 0.0056 29.6 7.0 58 109-166 25-92 (705)
456 PLN02678 seryl-tRNA synthetase 23.9 4.5E+02 0.0098 26.9 8.9 81 63-149 33-114 (448)
457 PF05700 BCAS2: Breast carcino 23.9 5.6E+02 0.012 23.3 9.3 37 151-187 177-213 (221)
458 PF10241 KxDL: Uncharacterized 23.7 3.6E+02 0.0078 21.1 7.8 48 37-84 24-71 (88)
459 PRK10803 tol-pal system protei 23.7 6.1E+02 0.013 23.8 9.3 60 18-84 44-103 (263)
460 PRK05892 nucleoside diphosphat 23.5 3.5E+02 0.0077 23.5 7.0 15 151-165 56-70 (158)
461 PF14770 TMEM18: Transmembrane 23.4 59 0.0013 27.5 2.0 39 263-301 17-61 (123)
462 KOG2264 Exostosin EXT1L [Signa 23.3 4.9E+02 0.011 28.1 8.9 52 34-85 92-143 (907)
463 PF05663 DUF809: Protein of un 23.1 62 0.0013 26.8 2.0 28 259-290 26-53 (138)
464 PF10205 KLRAQ: Predicted coil 22.9 4.3E+02 0.0094 21.7 10.0 26 113-138 46-71 (102)
465 PF06694 Plant_NMP1: Plant nuc 22.7 4E+02 0.0088 26.2 7.7 31 149-179 168-198 (325)
466 PF06698 DUF1192: Protein of u 22.6 1.3E+02 0.0029 22.3 3.5 23 124-146 24-46 (59)
467 KOG3385 V-SNARE [Intracellular 22.5 94 0.002 26.2 3.0 23 258-280 94-116 (118)
468 PF09340 NuA4: Histone acetylt 22.5 1.8E+02 0.0039 22.6 4.5 27 114-140 2-28 (80)
469 PF06143 Baculo_11_kDa: Baculo 22.4 2.1E+02 0.0046 22.8 4.8 16 239-254 20-35 (84)
470 PTZ00464 SNF-7-like protein; P 22.4 6.1E+02 0.013 23.3 9.6 28 119-146 23-50 (211)
471 PF07851 TMPIT: TMPIT-like pro 22.4 7.6E+02 0.017 24.4 11.0 22 123-144 70-91 (330)
472 TIGR03061 pip_yhgE_Nterm YhgE/ 22.2 1.2E+02 0.0026 25.9 3.8 19 250-268 4-22 (164)
473 PF13815 Dzip-like_N: Iguana/D 22.1 4.4E+02 0.0096 21.5 7.4 52 34-85 60-116 (118)
474 PF06657 Cep57_MT_bd: Centroso 21.9 3.8E+02 0.0082 20.7 8.3 26 150-175 51-76 (79)
475 PF10359 Fmp27_WPPW: RNA pol I 21.8 3.8E+02 0.0082 27.4 7.9 53 33-85 168-229 (475)
476 PLN03188 kinesin-12 family pro 21.7 1.4E+03 0.029 27.0 19.8 66 117-193 1176-1241(1320)
477 PF03981 Ubiq_cyt_C_chap: Ubiq 21.5 70 0.0015 26.5 2.2 19 264-282 13-31 (141)
478 PRK05431 seryl-tRNA synthetase 21.4 5.3E+02 0.011 26.0 8.7 37 110-146 69-105 (425)
479 PRK06342 transcription elongat 21.3 2.3E+02 0.0051 24.8 5.5 11 151-161 66-76 (160)
480 PF13755 Sensor_TM1: Sensor N- 21.2 1.3E+02 0.0029 23.6 3.5 32 250-281 7-38 (79)
481 PLN03229 acetyl-coenzyme A car 20.9 8.8E+02 0.019 26.7 10.5 16 74-89 433-448 (762)
482 PF07061 Swi5: Swi5; InterPro 20.9 4.2E+02 0.0091 20.8 6.6 27 118-144 4-30 (83)
483 PF13600 DUF4140: N-terminal d 20.8 2.2E+02 0.0047 22.4 4.8 30 115-144 71-100 (104)
484 PF08657 DASH_Spc34: DASH comp 20.8 2.7E+02 0.0058 26.5 6.1 40 46-85 177-216 (259)
485 TIGR03545 conserved hypothetic 20.7 1E+03 0.022 25.1 12.4 24 108-131 220-243 (555)
486 KOG0517 Beta-spectrin [Cytoske 20.7 1.7E+03 0.037 27.8 16.1 37 151-188 1455-1491(2473)
487 PRK03947 prefoldin subunit alp 20.7 5E+02 0.011 21.6 11.8 89 107-195 13-140 (140)
488 PRK15178 Vi polysaccharide exp 20.7 9.3E+02 0.02 24.7 17.7 26 58-83 281-306 (434)
489 PF05010 TACC: Transforming ac 20.7 6.7E+02 0.014 23.0 16.5 35 107-141 76-110 (207)
490 PRK00106 hypothetical protein; 20.6 1E+03 0.022 25.1 16.5 12 157-168 181-192 (535)
491 PRK11578 macrolide transporter 20.3 7.8E+02 0.017 23.7 12.0 75 114-192 106-180 (370)
492 PRK10361 DNA recombination pro 20.2 9.8E+02 0.021 24.8 19.0 7 183-189 207-213 (475)
493 PF06387 Calcyon: D1 dopamine 20.2 80 0.0017 28.5 2.3 35 253-287 80-116 (186)
494 COG1566 EmrA Multidrug resista 20.2 8.6E+02 0.019 24.1 12.6 121 45-188 87-208 (352)
495 KOG3119 Basic region leucine z 20.1 4E+02 0.0086 25.2 7.1 48 16-63 203-250 (269)
496 cd00890 Prefoldin Prefoldin is 20.1 4.6E+02 0.01 20.9 9.4 99 37-140 1-127 (129)
No 1
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=99.97 E-value=1e-31 Score=248.78 Aligned_cols=202 Identities=19% Similarity=0.299 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------------------------ccCCC--------cchhh
Q 022021 51 LAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRN--------------------------SNTHQ--------TGIYL 96 (304)
Q Consensus 51 la~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~--------------------------~~~~~--------~~~~~ 96 (304)
|..+|.+++..++++++++++|++||+|+..++... +...| ..++|
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Confidence 467899999999999999999999999999998420 01111 12347
Q ss_pred hHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChhHHHHHH-HHHHHHHHHHHHHHHHHH
Q 022021 97 KRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED-PTEVEIELKR-RLGQLTDHLIQKQAQVEA 174 (304)
Q Consensus 97 ~~i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~-~s~~~~elEk-Rl~~LTe~Li~KQtqlEs 174 (304)
+|||++| ||||| +++.+||+++++.+++|..|+.+++. ++||.++||| || |.+
T Consensus 81 LpIVtsQ-----RDRFR-------~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRy-------------lqS 135 (248)
T PF08172_consen 81 LPIVTSQ-----RDRFR-------QRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRY-------------LQS 135 (248)
T ss_pred HHHHHHH-----HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------Hhh
Confidence 9999999 99999 99999999999999999999999998 9999999999 99 999
Q ss_pred hhhhhHHHHHHHHHHHhhHhhcCCC----C-CCCCCCCCCCcccc-CCCccCCc--chhhhhccchhhhhhhhhHHHHHH
Q 022021 175 LSSEKATLAFRIEAVSRLLDENKPV----T-GSSSRDLEFGAWDL-SQSNLRPL--FEEKIRSGKKHIGSLLKQLDSIFL 246 (304)
Q Consensus 175 l~sEk~al~~qLErl~~~~~~~~~~----~-~~~~~~~~~~~~~~-~~~~l~p~--f~~~~~~~~r~~~~al~~lD~~~l 246 (304)
|....+. .-.......... + .....|.+.++|.. |+.++.|| |+.++. .|++++ |+|+|++++
T Consensus 136 Y~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~d~e~~rY~~~YE~~l~PF~~F~~~E~--~R~~~~-L~~~eR~~l 206 (248)
T PF08172_consen 136 YNNKGSG------SSSSAVSNSPGRSSVSPEPGGSSDVESNRYSSAYEESLNPFAAFRKRER--QRRYKR-LSPPERIFL 206 (248)
T ss_pred CcccccC------CCcccccCCCCcccCCCCCCCCCchhHHHHHHHHHhccChHHHHhHhhH--HHHHhc-CChHHHHHH
Confidence 9864211 000000000000 0 11133556668876 99999998 999998 888888 999999999
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Q 022021 247 AGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQSSAE 286 (304)
Q Consensus 247 ~~~r~lrr~p~aR~~~~~Y~v~LHl~V~~~L~~~s~~~~~ 286 (304)
.+||++.+++++|++|||||++||+|||++||+++.++++
T Consensus 207 s~~r~vL~nr~~R~~f~~Y~l~LH~lvf~~l~~~~~~~~~ 246 (248)
T PF08172_consen 207 SLTRFVLSNRTTRMLFFFYCLGLHLLVFFVLYYMSHSTSM 246 (248)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999999999997766544
No 2
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=99.96 E-value=1.6e-28 Score=247.89 Aligned_cols=265 Identities=25% Similarity=0.317 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 022021 6 SELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHE----- 80 (304)
Q Consensus 6 ~~l~~~~~~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~----- 80 (304)
..|++.+.+.=.|++.+...+..+...++.|..+.+..+..|+..+.++ .++.....+..++.++++.+.....
T Consensus 158 ~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~~~~~L~~~~~A~-~~~~~~l~~~~e~~~~l~l~~~~~~~~~~e 236 (511)
T PF09787_consen 158 RSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEIERQELEERPKAL-RHYIEYLRESGELQEQLELLKAEGESEEAE 236 (511)
T ss_pred hhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4566666666668888888888999999999999999999999888744 4566666666666666655544443
Q ss_pred --HHhh--------------hccc------CCCcc-----hhh---------------hHH---H---------------
Q 022021 81 --ELSQ--------------RNSN------THQTG-----IYL---------------KRL---A--------------- 100 (304)
Q Consensus 81 --~l~~--------------~~~~------~~~~~-----~~~---------------~~i---~--------------- 100 (304)
.++. .+-. ..... ..+ .+| .
T Consensus 237 l~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~ 316 (511)
T PF09787_consen 237 LQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQE 316 (511)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3331 0000 00000 000 000 0
Q ss_pred --------------hhhchhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCC--ChhHHHHHHHHHH
Q 022021 101 --------------ASKGVEFEREILEAEYTFIADKII----QLEDKAKKLEGNIEMTRKEIEDP--TEVEIELKRRLGQ 160 (304)
Q Consensus 101 --------------t~~~~e~E~e~~r~El~~l~~~~~----~Le~~l~~~e~eI~~lr~~l~~~--s~~~~elEkRl~~ 160 (304)
.....|.|..++.+|+.+..+... .+..++...+.||+.+|.+++.. +....++|+||++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~ 396 (511)
T PF09787_consen 317 SFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQ 396 (511)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhh
Confidence 000114556666777777776653 46677778899999999999872 3457899999999
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHhhcCCC-CCCCCCCCCCCcccc-CCCccCCcchhhhh--ccchhhhh
Q 022021 161 LTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPV-TGSSSRDLEFGAWDL-SQSNLRPLFEEKIR--SGKKHIGS 236 (304)
Q Consensus 161 LTe~Li~KQtqlEsl~sEk~al~~qLErl~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~l~p~f~~~~~--~~~r~~~~ 236 (304)
|||+||+||++||.+.+||++|.+||||+...+++..+. .+... ......|.. ...++.|++..... +..|++++
T Consensus 397 lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~~~~~~~~~~~-~~~~~~~~~d~~~r~~~~~~~~~~d~~~~~r~~~ 475 (511)
T PF09787_consen 397 LTESLIQKQTQLESLGSEKNALRLQLERLETQLKEEASNNRPSSI-LMKYSNSEDDAESRVPLLMKDSPHDIGVARRVKR 475 (511)
T ss_pred ccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHhhccCCCCchh-hHhhccCCCchhhhhhhhccCCCccchHHHHHHH
Confidence 999999999999999999999999999999887742121 11110 000011111 12333333332222 33699999
Q ss_pred hhhhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 022021 237 LLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLW 272 (304)
Q Consensus 237 al~~lD~~~l~~~r~lrr~p~aR~~~~~Y~v~LHl~ 272 (304)
|++.||+++||+|+||||||++|+|||+||++||+|
T Consensus 476 a~~~iD~~~ir~g~fLrr~p~~R~~~i~Y~~~LhlW 511 (511)
T PF09787_consen 476 AASVIDSFSIRLGIFLRRYPMARIFVIIYMALLHLW 511 (511)
T ss_pred HHHHHhHhhHHHHHHHhcCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999
No 3
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=99.96 E-value=1.8e-27 Score=231.39 Aligned_cols=272 Identities=15% Similarity=0.091 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H----HHHHH
Q 022021 7 ELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTEL--K----EVAHE 80 (304)
Q Consensus 7 ~l~~~~~~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~--l----E~~l~ 80 (304)
.||.-+-.+-+++..+.......-..+..|...+|.+..++..++.-+.+++.+.+.+++++++++.+ + |.-.+
T Consensus 210 ~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~ 289 (554)
T KOG4677|consen 210 SLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELAL 289 (554)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 45555666667788888888888888999999999999999999999999999999999999999888 2 22223
Q ss_pred HHhhh---cccCCC-cchhh---------------------------hHHH------------------------h----
Q 022021 81 ELSQR---NSNTHQ-TGIYL---------------------------KRLA------------------------A---- 101 (304)
Q Consensus 81 ~l~~~---~~~~~~-~~~~~---------------------------~~i~------------------------t---- 101 (304)
+.++. ++.+.+ +.+.+ .+|+ +
T Consensus 290 s~~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~ 369 (554)
T KOG4677|consen 290 SHYREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILN 369 (554)
T ss_pred HHHHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhh
Confidence 33332 111111 00010 1111 0
Q ss_pred -hhchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 102 -SKGVEFEREILEAEYTFIADKI----IQLEDKAKKLEGNIEMTRKEIEDPT--EVEIELKRRLGQLTDHLIQKQAQVEA 174 (304)
Q Consensus 102 -~~~~e~E~e~~r~El~~l~~~~----~~Le~~l~~~e~eI~~lr~~l~~~s--~~~~elEkRl~~LTe~Li~KQtqlEs 174 (304)
..-.+.+.+.|+.|..+..+.. ..++.++.+.+.+|.+|+.++...+ +....++.+.++||++|++||+++|+
T Consensus 370 ~~~~l~~~~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~r~~~~s~~~l~~~~~qLt~tl~qkq~~le~ 449 (554)
T KOG4677|consen 370 MPLVLTLFYECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKLRAWNDSVDALFTTKNQLTYTLKQKQIGLER 449 (554)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHHHhhhhhHHHHhchhHHHHHHHHHHHHHHHH
Confidence 0112233455565555555443 3578888889999999999998853 34789999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhhHhhcCCCCCCCCCCCCCCccccCCCccCCcchhhhhccchhhhhhhhhHHHHHHHHHHHHhh
Q 022021 175 LSSEKATLAFRIEAVSRLLDENKPVTGSSSRDLEFGAWDLSQSNLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRR 254 (304)
Q Consensus 175 l~sEk~al~~qLErl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~f~~~~~~~~r~~~~al~~lD~~~l~~~r~lrr 254 (304)
+..+++.|.++|||++...+..... .....+...++ ..+.+.|.|++... ..++.+|++.+|+++++++.|+|+
T Consensus 450 v~~~~~~ln~~lerLq~~~N~~~~v-~~~~~~n~~~~---~~~~v~~l~~d~~~--~~q~r~a~s~VD~~s~~l~~~lr~ 523 (554)
T KOG4677|consen 450 VVEILHKLNAPLERLQEYVNLVEDV-DTKLNLNTKFK---CHDVVIDLYRDLKD--RQQLRAARSKVDKGSAELEKILRL 523 (554)
T ss_pred HHHHHhhhhhhHHHHHHHhcccccc-ceeeccCCCcc---cccccchHhhhhhh--hHHHHHHHhhcchhhHHHHHHHhc
Confidence 9999999999999998854322211 11111111111 23445677887654 356777789999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 022021 255 NPIAKLWSLVYLVCLHLWVIYILLSHSQSS 284 (304)
Q Consensus 255 ~p~aR~~~~~Y~v~LHl~V~~~L~~~s~~~ 284 (304)
||.||+||++||++|||||||||++|||..
T Consensus 524 ~psArif~~~YmallHLWvmivlLTYTPEm 553 (554)
T KOG4677|consen 524 LPSARIFWKNYMALLHLWVMIVLLTYTPEM 553 (554)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 999999999999999999999999999974
No 4
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=99.64 E-value=8e-16 Score=155.61 Aligned_cols=213 Identities=20% Similarity=0.268 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---
Q 022021 9 QTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR--- 85 (304)
Q Consensus 9 ~~~~~~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~--- 85 (304)
++-|+.+++-+=+++++- +..=.+.|++.|.+++..+..++.+.++..+++++.+..+.++|.|+...+..
T Consensus 370 ~~~~~~~leslLl~knr~------lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~~~~~~~~ 443 (629)
T KOG0963|consen 370 EDETAKTLESLLLEKNRK------LQNENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLKVQVSPPA 443 (629)
T ss_pred cccccchHHHHHHHHHhh------hhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhhcccCCCC
Confidence 334567788777777764 33457889999999999999999999999999999999999999999998830
Q ss_pred -------cc------------cCCCcc------hhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 86 -------NS------------NTHQTG------IYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMT 140 (304)
Q Consensus 86 -------~~------------~~~~~~------~~~~~i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~l 140 (304)
.. +.+|.. +++.|||+++ |+||+ .++..++..++.....|..|
T Consensus 444 ~~~~~~~~~~~~~~v~e~s~~~~~p~~~~~~~~s~~l~ii~~q-----Rdrfr-------~~n~~~e~~~r~a~~~~~~l 511 (629)
T KOG0963|consen 444 EGATARREEGSGQPVPESSIMGGGPSLPNGGVLSRILSVISSQ-----RDRFR-------ARNVELEAQVRLANDKIGFL 511 (629)
T ss_pred CcchhhhcccCCcCCCcccccCCCCCccccccccccchhhhcc-----cchhh-------hhhhhHHHHHhhccCchhHH
Confidence 00 011111 2247889999 99999 88899999998888889989
Q ss_pred HHHhcC-CChhHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHhhcCCCCCCCCCCCCCCccc-cCCC
Q 022021 141 RKEIED-PTEVEIELKR-RLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPVTGSSSRDLEFGAWD-LSQS 217 (304)
Q Consensus 141 r~~l~~-~s~~~~elEk-Rl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 217 (304)
...+.. +.+|.+.||+ || +++|- ..+ ..+.|++. .|. .|+.
T Consensus 512 ~~el~~~~a~n~~lyekir~-------------~q~y~-------------------~~~---~~~~d~e~-~y~~~yee 555 (629)
T KOG0963|consen 512 ESELEKLKADNTKLYEKIRY-------------LQSYD-------------------GKS---GESSDVES-QYSAAYEE 555 (629)
T ss_pred hhhhhhhhcccccccccccC-------------ccccc-------------------cCC---CCCcchhh-hhhhHHHh
Confidence 888877 7889999999 99 77771 111 11123332 343 3788
Q ss_pred ccCCc--chhhhhccchhhhhhhhhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Q 022021 218 NLRPL--FEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILL 278 (304)
Q Consensus 218 ~l~p~--f~~~~~~~~r~~~~al~~lD~~~l~~~r~lrr~p~aR~~~~~Y~v~LHl~V~~~L~ 278 (304)
++.|| |+-.+. .|++.. +.++|++++.+++++..++++|.+||||+|+||++||++|+
T Consensus 556 ~l~p~a~f~k~e~--~~k~~~-l~~~~~~~~s~~r~~l~nk~~r~~~~~y~i~lh~~v~~~l~ 615 (629)
T KOG0963|consen 556 SISPFASFRKKER--ERKYKR-LGSFERITLSLGRTLLFNKMTRTLFFFYTIGLHLLVFIVLY 615 (629)
T ss_pred hcCHHHHHHHHHH--hhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 777766 788988 99999999999999999999999999999999999999999
No 5
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.14 Score=51.72 Aligned_cols=183 Identities=19% Similarity=0.203 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 022021 6 SELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEME---TNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 6 ~~l~~~~~~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~---~~~~~~l~q~v~~lE~~l~~l 82 (304)
.||.+.. +..+.+..|++.|-..=.++..+..+++.++.++...+---.+-++.. .+=++.|..+++.+--...++
T Consensus 234 eel~eq~-eeneel~ae~kqh~v~~~ales~~sq~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~l 312 (521)
T KOG1937|consen 234 EELTEQN-EENEELQAEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEEL 312 (521)
T ss_pred HHHHhhh-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHH
Confidence 3444444 555788889999999999999999999999999997665555544443 344555555555555555555
Q ss_pred hhhcccCCCc-chhhhHHH---hhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCh-hHHHHHH
Q 022021 83 SQRNSNTHQT-GIYLKRLA---ASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED-PTE-VEIELKR 156 (304)
Q Consensus 83 ~~~~~~~~~~-~~~~~~i~---t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~-~s~-~~~elEk 156 (304)
.+...+.-.+ ......+- -....+.++ + .++..+++.+..+-+++.+-+..-..||+++.. |.+ .-+.|..
T Consensus 313 tqqwed~R~pll~kkl~Lr~~l~~~e~e~~e--~-~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytq 389 (521)
T KOG1937|consen 313 TQQWEDTRQPLLQKKLQLREELKNLETEDEE--I-RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQ 389 (521)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcccchHHH--H-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 5443333211 11112221 122333333 3 356667777777777777777777889999987 544 4799999
Q ss_pred HHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHhhH
Q 022021 157 RLGQLTDHLIQKQ-AQVEALSSEKATLAFRIEAVSRLL 193 (304)
Q Consensus 157 Rl~~LTe~Li~KQ-tqlEsl~sEk~al~~qLErl~~~~ 193 (304)
|++.++-. |.|| +-|-.+..|...|+.+++.++.++
T Consensus 390 rikEi~gn-iRKq~~DI~Kil~etreLqkq~ns~se~L 426 (521)
T KOG1937|consen 390 RIKEIDGN-IRKQEQDIVKILEETRELQKQENSESEAL 426 (521)
T ss_pred HHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999876 5666 558889999999999988887644
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.19 E-value=0.14 Score=56.12 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 36 LLAKLETANADLARALAAAQKKLEMETNQV 65 (304)
Q Consensus 36 R~~~Le~~n~~la~ala~~q~~l~~~~~~~ 65 (304)
+...++.+...+...+..++..++....++
T Consensus 323 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 352 (1164)
T TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERKRR 352 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.10 E-value=0.11 Score=56.45 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 022021 157 RLGQLTDHLIQKQAQVEALSSE 178 (304)
Q Consensus 157 Rl~~LTe~Li~KQtqlEsl~sE 178 (304)
++..+.+.+-.-+.++..+..+
T Consensus 832 ~~~~l~~~~~~~~~~l~~~~~~ 853 (1179)
T TIGR02168 832 RIAATERRLEDLEEQIEELSED 853 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.08 E-value=0.11 Score=56.84 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 022021 155 KRRLGQLTDHLIQKQAQVEALSSEKATLAFRIE 187 (304)
Q Consensus 155 EkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLE 187 (304)
++.+..+.+.+-..+.++..+..+...+.-++.
T Consensus 454 ~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~ 486 (1164)
T TIGR02169 454 EWKLEQLAADLSKYEQELYDLKEEYDRVEKELS 486 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334433434434444444444444433333333
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.00 E-value=0.21 Score=54.40 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=5.2
Q ss_pred hhhhhHHHHHHHHH
Q 022021 175 LSSEKATLAFRIEA 188 (304)
Q Consensus 175 l~sEk~al~~qLEr 188 (304)
+..+...+..++++
T Consensus 913 l~~~l~~l~~~~~~ 926 (1179)
T TIGR02168 913 LRRELEELREKLAQ 926 (1179)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 10
>PRK11637 AmiB activator; Provisional
Probab=97.00 E-value=0.29 Score=48.85 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 16 MDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 16 ~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
++.++.++.....-..+....+.+++.+..++.+.|..++.++.....++..+..++..++.++..++
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444555555555555555555555555555555555444444444444444443
No 11
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.92 E-value=0.1 Score=48.29 Aligned_cols=167 Identities=21% Similarity=0.227 Sum_probs=105.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcc----hhh------
Q 022021 27 NNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTG----IYL------ 96 (304)
Q Consensus 27 ~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~----~~~------ 96 (304)
...-..+-.|..+.+.+...|.+.|..++..++....++....+++...+...+...+......... ..+
T Consensus 21 ~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~ 100 (237)
T PF00261_consen 21 EEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQ 100 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344456667777777777777777777666666655555555555555554444433211111100 001
Q ss_pred -hHH---Hh---hhchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------ChhHHHHHHHHHH
Q 022021 97 -KRL---AA---SKGVEFE--REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDP-------TEVEIELKRRLGQ 160 (304)
Q Consensus 97 -~~i---~t---~~~~e~E--~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~-------s~~~~elEkRl~~ 160 (304)
..+ .. ..-.+++ ......++...+++...++.++..++.+|..+...+++. +.-...||.+|+.
T Consensus 101 l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~ 180 (237)
T PF00261_consen 101 LKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRD 180 (237)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 000 00 0001111 345566777777888888888888888888888777651 2237899999999
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhH
Q 022021 161 LTDHLIQKQAQVEALSSEKATLAFRIEAVSRLL 193 (304)
Q Consensus 161 LTe~Li~KQtqlEsl~sEk~al~~qLErl~~~~ 193 (304)
|++.|-.=-+..+........|+.++.+++..+
T Consensus 181 L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL 213 (237)
T PF00261_consen 181 LEEKLKEAENRAEFAERRVKKLEKEIDRLEDEL 213 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888888888888876543
No 12
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.85 E-value=0.27 Score=57.51 Aligned_cols=154 Identities=25% Similarity=0.343 Sum_probs=91.4
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhh
Q 022021 18 AFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLK 97 (304)
Q Consensus 18 a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~ 97 (304)
.+..+++.-..+..++-+++..+.....++...+...+..+++...+...+..+..+++..+..++..+
T Consensus 877 ~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~----------- 945 (1930)
T KOG0161|consen 877 DLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQL----------- 945 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 455555555666666666666666666666666666666666666666666655555555555543321
Q ss_pred HHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 98 RLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSS 177 (304)
Q Consensus 98 ~i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~s 177 (304)
...|..+.-+. .+...++.+++.++.+|..++..++.=....+++|.++++|++.|.....++.++..
T Consensus 946 -----~~~E~~~~k~~-------~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k 1013 (1930)
T KOG0161|consen 946 -----EELELTLQKLE-------LEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNK 1013 (1930)
T ss_pred -----HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111122222 333344444555555555544444332234577999999999999999999999988
Q ss_pred hhHHHHHHHHHHHhhHh
Q 022021 178 EKATLAFRIEAVSRLLD 194 (304)
Q Consensus 178 Ek~al~~qLErl~~~~~ 194 (304)
-++.+.-+|+.++..+.
T Consensus 1014 ~~~kle~~l~~le~~le 1030 (1930)
T KOG0161|consen 1014 AKAKLEQQLDDLEVTLE 1030 (1930)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88777777776654333
No 13
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.65 E-value=0.17 Score=54.15 Aligned_cols=161 Identities=16% Similarity=0.191 Sum_probs=109.0
Q ss_pred HHHHHHHHHH-HHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCc
Q 022021 14 ETMDAFELEK-QRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQT 92 (304)
Q Consensus 14 ~~~~a~~~E~-~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~ 92 (304)
++.+-+-.|+ ..|...|.+...|...|..+...--+.|..|+...+..+..+..|.++.+......+.|.+|+...-..
T Consensus 543 ~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~ 622 (717)
T PF10168_consen 543 QATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQL 622 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677774 778899999999999999999999999999999999999999999988888888888887764333111
Q ss_pred chhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----ChhHHHHHHHHHHHHHHHHHH
Q 022021 93 GIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDP----TEVEIELKRRLGQLTDHLIQK 168 (304)
Q Consensus 93 ~~~~~~i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~----s~~~~elEkRl~~LTe~Li~K 168 (304)
-..-.|. ..++|++. ++|+..+.+++..+...++++...++..+.++... +.+...-+++.+.+.+.|-+=
T Consensus 623 l~~~~P~----LS~AEr~~-~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~ 697 (717)
T PF10168_consen 623 LNSQLPV----LSEAEREF-KKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQ 697 (717)
T ss_pred HhccCCC----CCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHH
Confidence 0000111 33456554 56777777777777777777776666666666431 112233344666666666555
Q ss_pred HHHHHHhhhhh
Q 022021 169 QAQVEALSSEK 179 (304)
Q Consensus 169 QtqlEsl~sEk 179 (304)
=.+|+.+..+.
T Consensus 698 ~~~I~~~v~~i 708 (717)
T PF10168_consen 698 GEEIDELVKQI 708 (717)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 14
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.64 E-value=0.5 Score=42.90 Aligned_cols=156 Identities=22% Similarity=0.268 Sum_probs=82.9
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhh
Q 022021 18 AFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLK 97 (304)
Q Consensus 18 a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~ 97 (304)
|+..=++.++.-=-.=+.=...|..+.+++-+......+.+.+...+...|.+-+..++.+...|+..+..+......+.
T Consensus 10 af~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~ 89 (201)
T PF13851_consen 10 AFQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQ 89 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433444445556666666666666666666666666666666666666666666555444332221111
Q ss_pred HHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhcCCCh-hHHHHHHHHHHHHHHHHHHH
Q 022021 98 RLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRK-------EIEDPTE-VEIELKRRLGQLTDHLIQKQ 169 (304)
Q Consensus 98 ~i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~-------~l~~~s~-~~~elEkRl~~LTe~Li~KQ 169 (304)
.+ -++ .....+++..++-+...|+.+..+++.+-..|.. ++.+.+. -...||+++..|++.|=.|.
T Consensus 90 ~~-k~r-----l~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~ke 163 (201)
T PF13851_consen 90 NL-KAR-----LKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKE 163 (201)
T ss_pred HH-HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111 1122233333333333344443333433333332 2233333 36899999999999999999
Q ss_pred HHHHHhhhhh
Q 022021 170 AQVEALSSEK 179 (304)
Q Consensus 170 tqlEsl~sEk 179 (304)
+||..+.+-.
T Consensus 164 aqL~evl~~~ 173 (201)
T PF13851_consen 164 AQLNEVLAAA 173 (201)
T ss_pred HHHHHHHHHc
Confidence 9999987654
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.60 E-value=0.6 Score=52.45 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 022021 150 VEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 191 (304)
Q Consensus 150 ~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~ 191 (304)
...+++++|+.+...+.+...+++.+....+.+..+++++..
T Consensus 885 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 926 (1163)
T COG1196 885 EKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEV 926 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777776666666666543
No 16
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.53 E-value=0.18 Score=55.22 Aligned_cols=157 Identities=18% Similarity=0.206 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchh----hhHHHhh------hchh
Q 022021 37 LAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIY----LKRLAAS------KGVE 106 (304)
Q Consensus 37 ~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~----~~~i~t~------~~~e 106 (304)
...|.++.+++.+.|-.++.+++++..-+-.+++.++.|+..+..+++.+++......+ ...+.+. |+.-
T Consensus 172 ~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ 251 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTT 251 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCc
Confidence 45689999999999999999999999999999999999999999999876555432211 2221111 1000
Q ss_pred -H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022021 107 -F----EREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED--PTEVEIELKRRLGQLTDHLIQKQAQVEALSSEK 179 (304)
Q Consensus 107 -~----E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~--~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk 179 (304)
. +.+..+.-...+++.|+.|.++-.-++++|+.+|.+-.. +......|.+.++.|-...---|++++.|.-|+
T Consensus 252 ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEn 331 (1195)
T KOG4643|consen 252 YKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEEN 331 (1195)
T ss_pred cchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 1 122344333344455555555555566777777766643 333567888899999999989999999999999
Q ss_pred HHHHHHHHHHHhhH
Q 022021 180 ATLAFRIEAVSRLL 193 (304)
Q Consensus 180 ~al~~qLErl~~~~ 193 (304)
..|..+=+.+...+
T Consensus 332 stLq~q~eqL~~~~ 345 (1195)
T KOG4643|consen 332 STLQVQKEQLDGQM 345 (1195)
T ss_pred HHHHHHHHHhhhhh
Confidence 88888777765443
No 17
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.33 E-value=0.65 Score=48.20 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHH
Q 022021 157 RLGQLTDHLIQKQAQVEALSSEKAT 181 (304)
Q Consensus 157 Rl~~LTe~Li~KQtqlEsl~sEk~a 181 (304)
.|+.+=++|-..|.+.+-|..|.++
T Consensus 291 qLr~~qe~lqaSqq~~~~L~~EL~~ 315 (546)
T PF07888_consen 291 QLRSAQEQLQASQQEAELLRKELSD 315 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555443
No 18
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.30 E-value=0.45 Score=51.83 Aligned_cols=138 Identities=20% Similarity=0.242 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 7 ELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAA-------QKKLEMETNQVAELRQQTELKEVAH 79 (304)
Q Consensus 7 ~l~~~~~~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~-------q~~l~~~~~~~~~l~q~v~~lE~~l 79 (304)
|..+.||+-..-+..|+..-.....+|++=-.++.++.+|.+.++.-+ +...+..+.++..+++.++.|+.|+
T Consensus 269 EfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdl 348 (1243)
T KOG0971|consen 269 EFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDL 348 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888999999888888899998889999999999887543 3444555778888999999999999
Q ss_pred HHHhhhcccCCCcc---hh--hhHH-----------Hh-----------hhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 80 EELSQRNSNTHQTG---IY--LKRL-----------AA-----------SKGVEFEREILEAEYTFIADKIIQLEDKAKK 132 (304)
Q Consensus 80 ~~l~~~~~~~~~~~---~~--~~~i-----------~t-----------~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~ 132 (304)
+=|+..+.+.+..+ ++ +.++ |. -+...-|.++.+.|+..+...-..|..++..
T Consensus 349 EILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~ 428 (1243)
T KOG0971|consen 349 EILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQ 428 (1243)
T ss_pred HHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99998766554322 11 1111 10 1122234455555555554444455555555
Q ss_pred HHHHHHHHHHHh
Q 022021 133 LEGNIEMTRKEI 144 (304)
Q Consensus 133 ~e~eI~~lr~~l 144 (304)
++..|..|+.++
T Consensus 429 aEs~iadlkEQV 440 (1243)
T KOG0971|consen 429 AESTIADLKEQV 440 (1243)
T ss_pred HHHHHHHHHHHH
Confidence 666666666555
No 19
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.27 E-value=1.7 Score=45.72 Aligned_cols=83 Identities=19% Similarity=0.303 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 022021 112 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED-PT-EVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 189 (304)
Q Consensus 112 ~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~-~s-~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl 189 (304)
.-+++..+.+++..+..+++..++.+.+|..++.. |. .+-.-|=+||.+.+-..=-=++.|+.+..+...++.++..+
T Consensus 445 ~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l 524 (594)
T PF05667_consen 445 KLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSL 524 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777788888888888888899988876 43 46899999999999986666678999999988888887777
Q ss_pred HhhHh
Q 022021 190 SRLLD 194 (304)
Q Consensus 190 ~~~~~ 194 (304)
+..++
T Consensus 525 ~gkL~ 529 (594)
T PF05667_consen 525 TGKLD 529 (594)
T ss_pred HHHHH
Confidence 66443
No 20
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.24 E-value=0.88 Score=49.24 Aligned_cols=173 Identities=18% Similarity=0.296 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 022021 12 MMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ 91 (304)
Q Consensus 12 ~~~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~ 91 (304)
|..=|+.++.|+..-..--+.+..|+-++..++.|+-.-|..++..+.....+.+.|+.-|+.|...++.-...+++...
T Consensus 285 mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~ 364 (775)
T PF10174_consen 285 MKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQA 364 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33447788888888887888888888888888888877788888777777777777777777777666665443222221
Q ss_pred cchhhhHHHhhhchhHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC----hh--
Q 022021 92 TGIYLKRLAASKGVEFEREILEAEY--------------TFIADKIIQLEDKAKKLEGNIEMTRKEIED-PT----EV-- 150 (304)
Q Consensus 92 ~~~~~~~i~t~~~~e~E~e~~r~El--------------~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~-~s----~~-- 150 (304)
. ....+.|..++..|+ ..+..++..|++.+++-...+..++..+.+ |. +.
T Consensus 365 ~---------~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~ 435 (775)
T PF10174_consen 365 Q---------IEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEAL 435 (775)
T ss_pred H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHH
Confidence 0 111223333333333 334444444555555555555555555553 21 10
Q ss_pred ------HHHHHH---HHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHhhH
Q 022021 151 ------EIELKR---RLGQLTDHL-IQKQAQVEALSSEKATLAFRIEAVSRLL 193 (304)
Q Consensus 151 ------~~elEk---Rl~~LTe~L-i~KQtqlEsl~sEk~al~~qLErl~~~~ 193 (304)
..++++ ++..+-+.. ..++..++.+..+..-+...++.++..+
T Consensus 436 ~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eL 488 (775)
T PF10174_consen 436 ETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKEL 488 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 122222 111111111 2456666777766666666666665433
No 21
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.15 E-value=0.76 Score=39.62 Aligned_cols=54 Identities=13% Similarity=0.160 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 32 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 32 ~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
.|..|...++...-++..........+...+.++..+...|+.++..+..++..
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666666666666666666666555543
No 22
>PRK02224 chromosome segregation protein; Provisional
Probab=96.14 E-value=2.2 Score=46.16 Aligned_cols=47 Identities=26% Similarity=0.359 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 39 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 39 ~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
.++.....+...+..++..++....++..+...+..++.....+...
T Consensus 255 ~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~ 301 (880)
T PRK02224 255 TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAE 301 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555555555555555555555444
No 23
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.13 E-value=1.6 Score=49.16 Aligned_cols=77 Identities=22% Similarity=0.212 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 7 ELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 7 ~l~~~~~~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
.-......-+..++.++............|..+++.....+...+..++..++........+.+.+..++..+..++
T Consensus 730 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (1163)
T COG1196 730 EELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAE 806 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556667788888888888888888888888888888888888887777777666666666666666666554
No 24
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.11 E-value=0.6 Score=49.26 Aligned_cols=63 Identities=13% Similarity=0.216 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 12 MMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEV 77 (304)
Q Consensus 12 ~~~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~ 77 (304)
+++++.-+..|+.-+..- ...--+.+...+..++..+..+..+.+....++.+|...+..|.+
T Consensus 2 l~e~l~qlq~Erd~ya~~---lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~ 64 (617)
T PF15070_consen 2 LMESLKQLQAERDQYAQQ---LKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKN 64 (617)
T ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777765432 111112345555555555555555555555555555444444433
No 25
>PRK11637 AmiB activator; Provisional
Probab=95.95 E-value=2 Score=42.85 Aligned_cols=67 Identities=24% Similarity=0.232 Sum_probs=44.7
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 18 AFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 18 a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
..+-+++.=..-..+....+..++.+...+...|...+..+...+.++..++..+..++.++...+.
T Consensus 58 ~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 58 AKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444333444456666777777777777777777777777777777777777777777666654
No 26
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.94 E-value=1.1 Score=48.49 Aligned_cols=131 Identities=19% Similarity=0.248 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 53 AAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKK 132 (304)
Q Consensus 53 ~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~ 132 (304)
++|.-|+.+..++..+.-.+..++..+..|+.++.-.....+.. .-+.+..+.+...+..++-.+.-++.+
T Consensus 228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~---------~k~le~~~s~~~~mK~k~d~~~~eL~r 298 (775)
T PF10174_consen 228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRL---------DKQLEVYKSHSLAMKSKMDRLKLELSR 298 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH---------HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 56777777777888888888888888888877643322221111 011223333444455556666666666
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Q 022021 133 LEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL 192 (304)
Q Consensus 133 ~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~~ 192 (304)
...+|..+...+.+......++-.+|.-|=+.|-.|+..-+-|.++.-+|+++||+....
T Consensus 299 k~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~ 358 (775)
T PF10174_consen 299 KKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQ 358 (775)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 666666666666654444556655777777777777777777777777777777765543
No 27
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.91 E-value=2.1 Score=43.64 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 53 AAQKKLEMETNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 53 ~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l 82 (304)
.++.+++....++..+..++..++..+.++
T Consensus 217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 217 RKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 28
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=95.88 E-value=0.98 Score=38.63 Aligned_cols=115 Identities=16% Similarity=0.211 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 022021 12 MMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ 91 (304)
Q Consensus 12 ~~~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~ 91 (304)
++-++..+=..+......++.+......++.++.-+...+..++..+++...++..+......++..+.++...
T Consensus 36 vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~------ 109 (151)
T PF11559_consen 36 VINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAK------ 109 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 44556677788888899999999999999999999999999998888888888887777777777777666433
Q ss_pred cchhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 92 TGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 92 ~~~~~~~i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
.+....|..+++ ..+.+.-....-++++.+.+|+.|+..+.
T Consensus 110 ----------~k~~kee~~klk---~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 110 ----------LKQEKEELQKLK---NQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred ----------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222222233332 12223335677788889999999887764
No 29
>PRK02224 chromosome segregation protein; Provisional
Probab=95.88 E-value=3.3 Score=44.73 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 117 TFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 117 ~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
..+.+++..++..+..++.++..+...+..
T Consensus 275 ~~l~~~i~~~~~~~~~le~e~~~l~~~l~~ 304 (880)
T PRK02224 275 EELAEEVRDLRERLEELEEERDDLLAEAGL 304 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444445555555555555555555543
No 30
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.87 E-value=1 Score=38.81 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 16 MDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 16 ~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l 82 (304)
|+++.+|...-...=.++-+..-.|+..+......|..++.++...-.+++.+...+......+..-
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~ 68 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES 68 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4566666666666666667777777777777777777777777777777777777766666666554
No 31
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.73 E-value=3.1 Score=43.32 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 35 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 35 ~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
.+..+|+..+.++......+..+.+....+.+++...+..||.++..+.++
T Consensus 185 ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk 235 (546)
T PF07888_consen 185 EEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQK 235 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555666666666666555543
No 32
>PRK09039 hypothetical protein; Validated
Probab=95.68 E-value=1.2 Score=43.73 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 022021 111 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKA 180 (304)
Q Consensus 111 ~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~ 180 (304)
.+..+|........+..-++..+.++|+.||.++. .++..|...-+..-.+|.+++.|..+.+
T Consensus 120 ~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla-------~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 120 ELAQELDSEKQVSARALAQVELLNQQIAALRRQLA-------ALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555566666666777777776643 3444444444444666666777766654
No 33
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.55 E-value=1.9 Score=50.81 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 113 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 113 r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
+..+..+.+.+..+..+-+.+.++|.++..++.
T Consensus 1476 ~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~ 1508 (1930)
T KOG0161|consen 1476 KNALEELLEQLEELRRENKNLSQEIEDLEEQKD 1508 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444443
No 34
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.55 E-value=1.7 Score=50.22 Aligned_cols=65 Identities=26% Similarity=0.201 Sum_probs=48.3
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 20 ELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 20 ~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
.-=.-+|..-|...++--+..+.+..+..+.|...+.++......+.++..++..|+.+.....+
T Consensus 271 aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~k 335 (1486)
T PRK04863 271 AADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASD 335 (1486)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345677777777777777777777777777777777777777777777777777777777654
No 35
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.52 E-value=2.1 Score=40.16 Aligned_cols=64 Identities=25% Similarity=0.271 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022021 16 MDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRN 86 (304)
Q Consensus 16 ~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~ 86 (304)
++.+..|+.+-..-+-....=+.+++++. .++-..+.....+++.++.++..++.++..++.++
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~-------e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~ 75 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAEL-------EALNKALEALEIELEDLENQVSQLESEIQEIRERI 75 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555443322223333333444444 44444444455555555556666666666666543
No 36
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.39 E-value=1.7 Score=41.03 Aligned_cols=57 Identities=23% Similarity=0.356 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 022021 107 FEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTD 163 (304)
Q Consensus 107 ~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe 163 (304)
.+.+.++.++..+..+..........++.+|..+|.++...+....+|+.++..|-+
T Consensus 75 ~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~e 131 (312)
T PF00038_consen 75 LEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKE 131 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHH
Confidence 334444444444444444444445556666666665555544445555555544443
No 37
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.22 E-value=3.9 Score=47.45 Aligned_cols=82 Identities=5% Similarity=0.055 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 022021 113 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE--D-PTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 189 (304)
Q Consensus 113 r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~--~-~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl 189 (304)
+.++......+..++.++...++.|+.+...=. . |.-+..+|+..+....+.+-+++.++..+..+.+.+.-.++.+
T Consensus 396 qeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql 475 (1486)
T PRK04863 396 KSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQF 475 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444332211 1 3334567777777888888888888877777777777666666
Q ss_pred HhhHh
Q 022021 190 SRLLD 194 (304)
Q Consensus 190 ~~~~~ 194 (304)
...+.
T Consensus 476 ~~~~~ 480 (1486)
T PRK04863 476 EQAYQ 480 (1486)
T ss_pred HHHHH
Confidence 55433
No 38
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.17 E-value=1.3 Score=40.15 Aligned_cols=124 Identities=24% Similarity=0.294 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHHHHHHHHHHHHH
Q 022021 44 NADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKI 123 (304)
Q Consensus 44 n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~El~~l~~~~ 123 (304)
..+|.+.|..++.++++...+..-|++....-+..+..+ ..+.+.+.+++... ..|...++..|....+..
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~-------e~~e~~Lpqll~~h--~eEvr~Lr~~LR~~q~~~ 84 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKY-------EDTEAELPQLLQRH--NEEVRVLRERLRKSQEQE 84 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 346777777777777777777777777766655555443 33334456665443 556677888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-------C-ChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 124 IQLEDKAKKLEGNIEMTRKEIED-------P-TEVEIELKRRLGQLTDHLIQKQAQVEALS 176 (304)
Q Consensus 124 ~~Le~~l~~~e~eI~~lr~~l~~-------~-s~~~~elEkRl~~LTe~Li~KQtqlEsl~ 176 (304)
..++.++++.+.+|..++.++.. + -+.-.+|..++..+...|-.+-..+..|.
T Consensus 85 r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Le 145 (194)
T PF15619_consen 85 RELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELE 145 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877754 1 11246667777777777766666665554
No 39
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.16 E-value=0.73 Score=43.19 Aligned_cols=99 Identities=23% Similarity=0.212 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 022021 46 DLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQ 125 (304)
Q Consensus 46 ~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~El~~l~~~~~~ 125 (304)
..-++|..++..++..+..+..++..++.+++....+...+.++.......-.-..+-..+.|..-+..|++.++++...
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~ 107 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINS 107 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444322221111111122223344444455554455444
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 022021 126 LEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 126 Le~~l~~~e~eI~~lr~~l 144 (304)
|++++..+..+++.+..++
T Consensus 108 le~el~~l~~~~~~l~~~i 126 (239)
T COG1579 108 LEDELAELMEEIEKLEKEI 126 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 40
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=2.2 Score=46.12 Aligned_cols=81 Identities=21% Similarity=0.327 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CChh-HHHHHH--HHHHHHHHHHHH-----------
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED------PTEV-EIELKR--RLGQLTDHLIQK----------- 168 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~------~s~~-~~elEk--Rl~~LTe~Li~K----------- 168 (304)
||.-..|++.+.+++.++++++.++-.|-+.|-.++++ +++. ..+|++ +-++|.-+=|.-
T Consensus 481 ~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~es 560 (1118)
T KOG1029|consen 481 RELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETES 560 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777899999999999999999998888888888865 1222 455655 222332222211
Q ss_pred --------HHHHHHhhhhhHHHHHHHHHH
Q 022021 169 --------QAQVEALSSEKATLAFRIEAV 189 (304)
Q Consensus 169 --------QtqlEsl~sEk~al~~qLErl 189 (304)
-+|++.|..+.+++.+.+|.+
T Consensus 561 k~~eidi~n~qlkelk~~~~~q~lake~~ 589 (1118)
T KOG1029|consen 561 KLNEIDIFNNQLKELKEDVNSQQLAKEEL 589 (1118)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 135555666667777777664
No 41
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.76 E-value=0.77 Score=47.69 Aligned_cols=123 Identities=21% Similarity=0.311 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC--cchh--hh-HHHhhhchhHHHHHHHHHHHHHHH
Q 022021 47 LARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ--TGIY--LK-RLAASKGVEFEREILEAEYTFIAD 121 (304)
Q Consensus 47 la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~--~~~~--~~-~i~t~~~~e~E~e~~r~El~~l~~ 121 (304)
|...|+++.+-+++...+.+.++..+.++..++..++.+..+... .+.+ +. .....-..++|...++..+..+++
T Consensus 90 ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~ 169 (546)
T KOG0977|consen 90 YEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALED 169 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 445667777778888888888888888888888888876444422 1111 11 011122345566666666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHH
Q 022021 122 KIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQ 169 (304)
Q Consensus 122 ~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQ 169 (304)
++..|..+...+..+|..+|.++..-+--..+++.+...|.+-|--++
T Consensus 170 e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 170 ELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 777777777777777777776665544345666666666666554433
No 42
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.71 E-value=6.4 Score=42.27 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 31 MEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQ 70 (304)
Q Consensus 31 ~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q 70 (304)
..+-.=+..++.+|+.|.+.+..+.+..+..+.-+..|+.
T Consensus 456 r~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEk 495 (697)
T PF09726_consen 456 RSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEK 495 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445667777777777777666666555544444443
No 43
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.69 E-value=4.7 Score=45.35 Aligned_cols=153 Identities=17% Similarity=0.173 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHH--------
Q 022021 29 TRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLA-------- 100 (304)
Q Consensus 29 Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~-------- 100 (304)
-+.....+..+++.+.+.....+-.+.+++.....+++..+.+...++...+..+..+++.+.....+..+.
T Consensus 385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777788887777777777777777777777766666554444333222221110
Q ss_pred ---h-----hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 022021 101 ---A-----SKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQV 172 (304)
Q Consensus 101 ---t-----~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtql 172 (304)
. ..+...|.+.+..|+.-...++.+...+++..+.+...|..-..+-...-.++..+|-.....+..+++.+
T Consensus 465 e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l 544 (1293)
T KOG0996|consen 465 EILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTEL 544 (1293)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01111222333333333333333444444444444444433333322234566667777777777777776
Q ss_pred HHhhhhhHH
Q 022021 173 EALSSEKAT 181 (304)
Q Consensus 173 Esl~sEk~a 181 (304)
.++..+..+
T Consensus 545 ~~~k~~l~~ 553 (1293)
T KOG0996|consen 545 DDLKEELPS 553 (1293)
T ss_pred HHHHHhhhh
Confidence 666555544
No 44
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.64 E-value=0.42 Score=42.84 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=20.2
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 18 AFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 18 a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
.+..|+..=.-++-+...|+..+..++..+.+.+...+..+.....++..|+.++..++..+...+
T Consensus 78 ~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~ 143 (194)
T PF08614_consen 78 KLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKN 143 (194)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666777777777777777777777777777777777777766666666666554
No 45
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.58 E-value=2.5 Score=37.18 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 41 ETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEE 81 (304)
Q Consensus 41 e~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~ 81 (304)
+.+-.+....++.+++++++...+...+...+..++.+...
T Consensus 80 ~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~ 120 (191)
T PF04156_consen 80 QGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQE 120 (191)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555554444444444444444444433
No 46
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.57 E-value=5.8 Score=44.77 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 022021 157 RLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 191 (304)
Q Consensus 157 Rl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~ 191 (304)
||+.|.-....++.+|+.+.++..-|+-+++.+-.
T Consensus 1711 ~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~ 1745 (1758)
T KOG0994|consen 1711 RLKDLELEYLRNEQALEDKAAELAGLEKRVESVLD 1745 (1758)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 66666666678888899999988888888888654
No 47
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.52 E-value=8.8 Score=43.90 Aligned_cols=26 Identities=8% Similarity=0.041 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 40 LETANADLARALAAAQKKLEMETNQV 65 (304)
Q Consensus 40 Le~~n~~la~ala~~q~~l~~~~~~~ 65 (304)
++.+..++...+..+...++.....+
T Consensus 756 le~~l~~~~~~le~~~~~l~~~~~~~ 781 (1311)
T TIGR00606 756 VNRDIQRLKNDIEEQETLLGTIMPEE 781 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33333333333333333333333333
No 48
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.49 E-value=5 Score=38.84 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 022021 157 RLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 191 (304)
Q Consensus 157 Rl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~ 191 (304)
.+.+|...|-.++..++.+..++..+.-++..+++
T Consensus 231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 231 ELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443
No 49
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.39 E-value=4.2 Score=43.75 Aligned_cols=144 Identities=18% Similarity=0.211 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHHH
Q 022021 34 LQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILE 113 (304)
Q Consensus 34 ~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r 113 (304)
..|++.|.....+|...|..+...++..+++.+.|...+..+..+++.+...-... ..-+.+. +. . -.|+=
T Consensus 26 a~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~l---r~e~ke~--K~---r-E~rll 96 (717)
T PF09730_consen 26 ASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRL---REEIKEY--KF---R-EARLL 96 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HH---H-HHHHh
Confidence 34555555555555555555555555555555555555555444444432210000 0000111 11 0 23566
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCChh----HHHHHH--HHHHHHHHHHHHHHHHHHhhhhh---HH
Q 022021 114 AEYTFIADKIIQLEDKAKK---LEGNIEMTRKEIEDPTEV----EIELKR--RLGQLTDHLIQKQAQVEALSSEK---AT 181 (304)
Q Consensus 114 ~El~~l~~~~~~Le~~l~~---~e~eI~~lr~~l~~~s~~----~~elEk--Rl~~LTe~Li~KQtqlEsl~sEk---~a 181 (304)
++|+.|+++|..||..+.. -+.+.+-++.+++.-... ...+|- ||+.+++.=+ -..||++..|+ ++
T Consensus 97 ~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~ql--eEALesl~~EReqk~~ 174 (717)
T PF09730_consen 97 QDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQL--EEALESLKSEREQKNA 174 (717)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 7888899998888887543 345666667766552221 222332 5655544322 24678888776 66
Q ss_pred HHHHHHH
Q 022021 182 LAFRIEA 188 (304)
Q Consensus 182 l~~qLEr 188 (304)
|+..|..
T Consensus 175 LrkEL~~ 181 (717)
T PF09730_consen 175 LRKELDQ 181 (717)
T ss_pred HHHHHHH
Confidence 6666655
No 50
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.28 E-value=5.5 Score=38.53 Aligned_cols=12 Identities=17% Similarity=0.454 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHh
Q 022021 180 ATLAFRIEAVSR 191 (304)
Q Consensus 180 ~al~~qLErl~~ 191 (304)
..|.-+++.++.
T Consensus 279 ~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 279 KRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 51
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.26 E-value=11 Score=42.05 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 022021 154 LKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 189 (304)
Q Consensus 154 lEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl 189 (304)
|..-+..+.+-+-..|...+...+++..++-.++-.
T Consensus 420 L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~ 455 (1074)
T KOG0250|consen 420 LREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENI 455 (1074)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555555554444444443
No 52
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.25 E-value=6.4 Score=44.95 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 33 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 33 a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
.+.+...|+.+..+|.+.+..+...+.+...++..+...+..+......++.
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELIS 930 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 5556677777777777777777777777777776666666666666655543
No 53
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.98 E-value=1.5 Score=40.06 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 33 ALQLLAKLETANADLARALAAAQKKLE 59 (304)
Q Consensus 33 a~~R~~~Le~~n~~la~ala~~q~~l~ 59 (304)
+-.|+.+++.+.+++...|++.....+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 556777777777777777777765544
No 54
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.94 E-value=3.4 Score=34.84 Aligned_cols=113 Identities=26% Similarity=0.230 Sum_probs=53.8
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchh----hhHH
Q 022021 24 QRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIY----LKRL 99 (304)
Q Consensus 24 ~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~----~~~i 99 (304)
..-..--..+..++..++......++....+|.+++.....-+..-+.+..+...+..++..+......... +...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~ 92 (132)
T PF07926_consen 13 QRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEES 92 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344445555555666666666666666665554444444444444444444444321111111000 0111
Q ss_pred HhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 100 AASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIE 138 (304)
Q Consensus 100 ~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~ 138 (304)
-.+| +.++..+..|+..++.++.+|..+-+-+...|+
T Consensus 93 e~sw--~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 93 EASW--EEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1233 333556666666666666666666555555554
No 55
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.86 E-value=3.6 Score=44.23 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=47.6
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHH---HHHHHHHHHHHHHHHHHHhhhhh
Q 022021 103 KGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKR---RLGQLTDHLIQKQAQVEALSSEK 179 (304)
Q Consensus 103 ~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEk---Rl~~LTe~Li~KQtqlEsl~sEk 179 (304)
...|.++.++|.|+.....+=.+|=.....++.|.=.|.++++.-..++.+||. -++.|.|-.-.=..|+|....=|
T Consensus 72 ~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk 151 (717)
T PF09730_consen 72 EDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLK 151 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667776666655554444444444555555555555553335566665 56666666666666676666555
Q ss_pred HHHHHHHHH
Q 022021 180 ATLAFRIEA 188 (304)
Q Consensus 180 ~al~~qLEr 188 (304)
.-.+-|||-
T Consensus 152 ~iae~qleE 160 (717)
T PF09730_consen 152 EIAEKQLEE 160 (717)
T ss_pred HHHHHHHHH
Confidence 433444433
No 56
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.75 E-value=6.6 Score=38.16 Aligned_cols=160 Identities=20% Similarity=0.245 Sum_probs=85.7
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC---cchhh--------
Q 022021 29 TRMEALQLL-AKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ---TGIYL-------- 96 (304)
Q Consensus 29 Tr~~a~~R~-~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~---~~~~~-------- 96 (304)
..-+..+|. ..|-..|.+|......++..|......+..|+..+.....-+.-+-..-....+ ..+++
T Consensus 76 rDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~ 155 (306)
T PF04849_consen 76 RDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLS 155 (306)
T ss_pred hhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccc
Confidence 344566777 778889999999999999999999999999999887765544332210000011 11111
Q ss_pred ------hHHHh--hhchhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 022021 97 ------KRLAA--SKGVEFEREILEAEYTFIADKIIQLEDK-----------AKKLEGNIEMTRKEIEDPTEVEIELKRR 157 (304)
Q Consensus 97 ------~~i~t--~~~~e~E~e~~r~El~~l~~~~~~Le~~-----------l~~~e~eI~~lr~~l~~~s~~~~elEkR 157 (304)
...+. .+..|.|...+|.|.+.+...-..+|++ +......|..|..++..++........-
T Consensus 156 ~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEE 235 (306)
T PF04849_consen 156 SQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEE 235 (306)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 2234455555555555554433333333 2222334444444444444444444445
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 022021 158 LGQLTDHLIQKQAQVEALSSEKATLAFRIEA 188 (304)
Q Consensus 158 l~~LTe~Li~KQtqlEsl~sEk~al~~qLEr 188 (304)
+-+|.-+++..|..+-.+..|+--|...|..
T Consensus 236 It~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 236 ITSLLSQIVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5555555555555555555555444444443
No 57
>PRK09039 hypothetical protein; Validated
Probab=93.70 E-value=7.6 Score=38.06 Aligned_cols=36 Identities=6% Similarity=0.020 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
.+..+.+++....++..|..++..++..+..+..++
T Consensus 125 L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L 160 (343)
T PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAAL 160 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444333333333333333333333333333
No 58
>PRK03918 chromosome segregation protein; Provisional
Probab=93.42 E-value=13 Score=40.02 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022021 40 LETANADLARALAAAQKKLEME 61 (304)
Q Consensus 40 Le~~n~~la~ala~~q~~l~~~ 61 (304)
++.+..++.+.+..++.++...
T Consensus 198 l~~~~~~l~~ei~~l~~e~~~l 219 (880)
T PRK03918 198 KEKELEEVLREINEISSELPEL 219 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 59
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.36 E-value=2.9 Score=45.34 Aligned_cols=113 Identities=25% Similarity=0.322 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHH
Q 022021 30 RMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFER 109 (304)
Q Consensus 30 r~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~ 109 (304)
...-..-+-.++.+-.++...|+.|+..++....++.++.+.+..|...+..++.. +...+.+.
T Consensus 591 ~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS----------------~s~~E~ql 654 (769)
T PF05911_consen 591 KKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKES----------------NSLAETQL 654 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHH
Confidence 33456677788888889999999999999999999999999999988888876543 22222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 022021 110 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRL 158 (304)
Q Consensus 110 e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl 158 (304)
.-.+.-+..++-++..++.++..+...|..|..++..-.....+++.++
T Consensus 655 ~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc 703 (769)
T PF05911_consen 655 KAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKC 703 (769)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHH
Confidence 3333334444444455555555555555555555544222345555555
No 60
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.01 E-value=3.5 Score=40.05 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh-------hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 108 EREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTE-------VEIELKRRLGQLTDHLIQKQAQVEALSS 177 (304)
Q Consensus 108 E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~-------~~~elEkRl~~LTe~Li~KQtqlEsl~s 177 (304)
|..++..|+.++..++..|+.+++..-.+-+.|...+....+ ...+|..||......|..=|.++-.+..
T Consensus 228 e~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 228 ENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 356677889999999999999999988888888888754222 3677888888888888888888877653
No 61
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.98 E-value=16 Score=41.37 Aligned_cols=83 Identities=18% Similarity=0.289 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 022021 108 EREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIE 187 (304)
Q Consensus 108 E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLE 187 (304)
|.++...|+.-|..+...+..++..+...+..++............++.-|.++-+-+.++-+.++.+..+-..+.-+|-
T Consensus 501 e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~ 580 (1293)
T KOG0996|consen 501 ELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLN 580 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444445544444444444444444444444444443333334444444555555555555555555544444444444
Q ss_pred HHH
Q 022021 188 AVS 190 (304)
Q Consensus 188 rl~ 190 (304)
++.
T Consensus 581 ~~r 583 (1293)
T KOG0996|consen 581 KLR 583 (1293)
T ss_pred HHH
Confidence 443
No 62
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.90 E-value=15 Score=39.52 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=14.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 104 GVEFEREILEAEYTFIADKIIQLEDKA 130 (304)
Q Consensus 104 ~~e~E~e~~r~El~~l~~~~~~Le~~l 130 (304)
+.|.|...++.|+...++++..+|.++
T Consensus 549 ~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 549 QLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555544
No 63
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=92.87 E-value=19 Score=40.25 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 34 LQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 34 ~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
..-..+|+.+|..|...+..++.++-....+..+++...+.|....+.+..
T Consensus 400 ~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~ 450 (1195)
T KOG4643|consen 400 ISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLE 450 (1195)
T ss_pred HHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556777777777777777777777777777777766666666666654
No 64
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.83 E-value=14 Score=38.76 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=11.3
Q ss_pred HHHHHhhhhh---HHHHHHHHH
Q 022021 170 AQVEALSSEK---ATLAFRIEA 188 (304)
Q Consensus 170 tqlEsl~sEk---~al~~qLEr 188 (304)
..||++..|+ ++|...|+.
T Consensus 233 EALeTlq~EReqk~alkkEL~q 254 (772)
T KOG0999|consen 233 EALETLQQEREQKNALKKELSQ 254 (772)
T ss_pred HHHHHHHhHHHHHHHHHHHHHH
Confidence 3566666665 566655554
No 65
>PRK11281 hypothetical protein; Provisional
Probab=92.79 E-value=21 Score=40.52 Aligned_cols=34 Identities=12% Similarity=0.278 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 022021 158 LGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 191 (304)
Q Consensus 158 l~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~ 191 (304)
=+.|++.|++=-..++.+..+.....-+++++.+
T Consensus 287 N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q 320 (1113)
T PRK11281 287 NLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQ 320 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777666777777776666666666543
No 66
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=92.67 E-value=20 Score=40.13 Aligned_cols=67 Identities=13% Similarity=0.271 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022021 113 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEK 179 (304)
Q Consensus 113 r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk 179 (304)
..++..|+.++..+|..+..+.++.+..+..+..--......+..+.+|-..+=..+..|..+..-+
T Consensus 400 e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k 466 (1074)
T KOG0250|consen 400 ENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTK 466 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455556666666666666666666666666655333344456678888888888888888887655
No 67
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=92.66 E-value=3.7 Score=34.00 Aligned_cols=44 Identities=30% Similarity=0.379 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 40 LETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 40 Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
|+..+.++++.|+.+++.++..+.-..+|-.+-+.|++.+..|+
T Consensus 7 l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~ 50 (107)
T PF09304_consen 7 LEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQ 50 (107)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHH
Confidence 55566666667777777777776666666555555555555554
No 68
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.63 E-value=10 Score=36.66 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 34 LQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 34 ~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
..+...+......+.+.++.++..+.....++..++.++..++..+...+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~ 178 (423)
T TIGR01843 129 KGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVIS 178 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555554444443
No 69
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.48 E-value=6.9 Score=46.00 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 41 ETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 41 e~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l 82 (304)
+..-..+.+.+..+++.++....++..++..+..+-+.+..+
T Consensus 51 eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~ 92 (1822)
T KOG4674|consen 51 EQQLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQL 92 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444555555555555555555555555554444444443
No 70
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.40 E-value=20 Score=40.73 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 121 DKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 121 ~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
.++..++.+++...++++.+...+
T Consensus 685 ~~l~~l~~~l~~~~~e~~~~~~~~ 708 (1201)
T PF12128_consen 685 EQLNELEEELKQLKQELEELLEEL 708 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 71
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.13 E-value=5.6 Score=33.50 Aligned_cols=31 Identities=29% Similarity=0.318 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 022021 150 VEIELKRRLGQLTDHLIQKQAQVEALSSEKA 180 (304)
Q Consensus 150 ~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~ 180 (304)
...+++.||..+=+.|=+|=..+|.|..+..
T Consensus 76 el~~l~~ry~t~LellGEK~E~veEL~~Dv~ 106 (120)
T PF12325_consen 76 ELEELQQRYQTLLELLGEKSEEVEELRADVQ 106 (120)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3577888998888888888888777776654
No 72
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.03 E-value=12 Score=36.15 Aligned_cols=45 Identities=18% Similarity=0.101 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 35 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAH 79 (304)
Q Consensus 35 ~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l 79 (304)
.+...+..+...+...++..+..++....++..++..+...+..+
T Consensus 137 ~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~ 181 (423)
T TIGR01843 137 SRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEEL 181 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444333
No 73
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.90 E-value=9.7 Score=34.67 Aligned_cols=51 Identities=22% Similarity=0.199 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 33 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 33 a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
.+.-+..|+..|..|+..-+.+++.++....--+.|...+..|...+.+++
T Consensus 6 L~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q 56 (193)
T PF14662_consen 6 LLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ 56 (193)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666555555555555555555555444
No 74
>PRK03918 chromosome segregation protein; Provisional
Probab=91.74 E-value=22 Score=38.39 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 113 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 113 r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
..++..+.+.+..++.++..+..+|..++.++
T Consensus 618 ~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~ 649 (880)
T PRK03918 618 EKELKKLEEELDKAFEELAETEKRLEELRKEL 649 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444
No 75
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.60 E-value=11 Score=34.85 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=59.1
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhH
Q 022021 23 KQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKR 98 (304)
Q Consensus 23 ~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~ 98 (304)
.+.-..++.+.+.|..++..+..++...+..+.++++........++..+...+..+++|++++.........+.|
T Consensus 30 ~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 30 QQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455567888999999999999999999999999999999999999999999999988775555444333333
No 76
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.42 E-value=14 Score=38.72 Aligned_cols=126 Identities=16% Similarity=0.201 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 022021 14 ETMDAFELEKQRHNNTRMEALQLLAKLETANA----DLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 89 (304)
Q Consensus 14 ~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~----~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~ 89 (304)
.+-+|+.-=+-.|+-+-..-..|+-.|-.+-+ .|-..|..++..|.....+++.-+..++.++....++...
T Consensus 68 qtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~---- 143 (772)
T KOG0999|consen 68 QTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKES---- 143 (772)
T ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----
Confidence 34445555555565554555566555544433 3444555666666666666666666666665555555332
Q ss_pred CCcchhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH
Q 022021 90 HQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELK 155 (304)
Q Consensus 90 ~~~~~~~~~i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elE 155 (304)
....|.+|-|+|.|+....-+-++|=.+...++.+-=-|.+++++-..+..+||
T Consensus 144 ------------~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyE 197 (772)
T KOG0999|consen 144 ------------NAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYE 197 (772)
T ss_pred ------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhh
Confidence 334455566666555554444333333333333333333444443222344444
No 77
>PLN02939 transferase, transferring glycosyl groups
Probab=91.39 E-value=24 Score=39.42 Aligned_cols=61 Identities=21% Similarity=0.242 Sum_probs=47.0
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhc
Q 022021 26 HNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELR---QQTELKEVAHEELSQRN 86 (304)
Q Consensus 26 H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~---q~v~~lE~~l~~l~~~~ 86 (304)
-+..|.+|+..+.+...+..+|...+..++-+|.+...+..-.. .-++.+|..++.|+..+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (977)
T PLN02939 147 LNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNEL 210 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhh
Confidence 37889999999999999999999999999999999755543322 23455666677776543
No 78
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.33 E-value=18 Score=36.55 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 4 MASELQTSMMETMDAFELEKQRH--NNTRMEALQLLAKLETANADLARALAAAQK 56 (304)
Q Consensus 4 ~~~~l~~~~~~~~~a~~~E~~~H--~~Tr~~a~~R~~~Le~~n~~la~ala~~q~ 56 (304)
.|..+=+.+++..-.--.+.+.. ..+..-...++.+++.+..+..+++.+.+.
T Consensus 135 ~Aa~i~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~ 189 (498)
T TIGR03007 135 LAKDVVQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQ 189 (498)
T ss_pred HHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455544433222222222 234444455677777777777777776653
No 79
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.21 E-value=9.8 Score=33.41 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022021 116 YTFIADKIIQLEDKAKKLEGNIE 138 (304)
Q Consensus 116 l~~l~~~~~~Le~~l~~~e~eI~ 138 (304)
+..+.+++.++++++++....++
T Consensus 139 ~~~~~~e~~~l~~~~~~~~~~~~ 161 (191)
T PF04156_consen 139 IKELEKEIRELQKELQDSREEVQ 161 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444333333333333
No 80
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=91.19 E-value=12 Score=34.30 Aligned_cols=150 Identities=17% Similarity=0.230 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHH
Q 022021 33 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREIL 112 (304)
Q Consensus 33 a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~ 112 (304)
+..|+.++...+.+...+-.--.+-.-....+...+.++...++..+...+.-..++-..- -. +... .-+.
T Consensus 23 aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~---eE-Vark-----L~ii 93 (205)
T KOG1003|consen 23 AQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKY---EE-VARK-----LVII 93 (205)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHH-----HHHH
Confidence 4455555555555555544444444444444444455555555554444322100000000 00 0000 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 022021 113 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED-------PTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFR 185 (304)
Q Consensus 113 r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~-------~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~q 185 (304)
..+|...+++...-+.++..++.++..+.+.+++ ..+....|+..++.||+.|=+=-+..|......+.|...
T Consensus 94 E~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke 173 (205)
T KOG1003|consen 94 EGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKE 173 (205)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHccc
Confidence 4444444455444444445555555544444443 234578899999999999987777777777666777666
Q ss_pred HHHHHh
Q 022021 186 IEAVSR 191 (304)
Q Consensus 186 LErl~~ 191 (304)
.++++.
T Consensus 174 ~DdlE~ 179 (205)
T KOG1003|consen 174 RDDLEE 179 (205)
T ss_pred HHHHHH
Confidence 666654
No 81
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.07 E-value=14 Score=34.88 Aligned_cols=67 Identities=22% Similarity=0.187 Sum_probs=47.2
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 18 AFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 18 a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
.++.|...-...-.++-.|..+....+.++...+..+...++..+.....|+.++..|+.++.-++.
T Consensus 72 ~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~ 138 (312)
T PF00038_consen 72 RLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ 138 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Confidence 3444444445555566666666677777777788888888888888888888888888887766664
No 82
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=91.02 E-value=13 Score=34.34 Aligned_cols=52 Identities=23% Similarity=0.256 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 32 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 32 ~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
.+..|+..++....+...++..++........++..+..++......+.+..
T Consensus 61 ~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e 112 (237)
T PF00261_consen 61 EATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAE 112 (237)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444444444444444444444444444444444433
No 83
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.77 E-value=32 Score=38.48 Aligned_cols=82 Identities=23% Similarity=0.310 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 022021 108 EREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEV-------EIELKRRLGQLTDHLIQKQAQVEALSSEKA 180 (304)
Q Consensus 108 E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~-------~~elEkRl~~LTe~Li~KQtqlEsl~sEk~ 180 (304)
..++.+.++..+...+..++++...++.++..++.+++..+.. -.+.=..+...=+.++.|+.++|++.....
T Consensus 256 ~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~ 335 (1072)
T KOG0979|consen 256 AKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAE 335 (1072)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777777776666666666666666666666553221 111111345556678888999999887665
Q ss_pred HHHHHHHHH
Q 022021 181 TLAFRIEAV 189 (304)
Q Consensus 181 al~~qLErl 189 (304)
-.+-++++.
T Consensus 336 ~rq~~i~~~ 344 (1072)
T KOG0979|consen 336 KRQKRIEKA 344 (1072)
T ss_pred HHHHHHHHH
Confidence 555555554
No 84
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.76 E-value=16 Score=40.65 Aligned_cols=59 Identities=14% Similarity=0.264 Sum_probs=53.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 27 NNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 27 ~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
+.+|-+++--+.+.+.++.+|.++|+.|.+++++...+++.+.......+++.....+.
T Consensus 663 krsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~ 721 (1200)
T KOG0964|consen 663 KRSRLELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKRE 721 (1200)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 56788888888999999999999999999999999999999999999999988777654
No 85
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=90.71 E-value=8.3 Score=36.78 Aligned_cols=62 Identities=24% Similarity=0.253 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 5 ASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAE 67 (304)
Q Consensus 5 ~~~l~~~~~~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~ 67 (304)
|||+=.+--...+.+.-|. .....|+.++.|-.++..--..+..++...+.+++..+..+..
T Consensus 126 aseit~~GA~LydlL~kE~-~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~ 187 (267)
T PF10234_consen 126 ASEITQRGASLYDLLGKEV-ELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNN 187 (267)
T ss_pred HHHHHHHHHHHHHHHhchH-hHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555666677776 6677788888887776665555555555555555554444433
No 86
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.69 E-value=14 Score=34.19 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022021 37 LAKLETANADLARALAAAQKKL 58 (304)
Q Consensus 37 ~~~Le~~n~~la~ala~~q~~l 58 (304)
+..++....++..+...++.++
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i 43 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRI 43 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 87
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=90.68 E-value=21 Score=40.67 Aligned_cols=36 Identities=14% Similarity=0.113 Sum_probs=24.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 022021 147 PTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATL 182 (304)
Q Consensus 147 ~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al 182 (304)
+-+..++||.-|-.=-..|..|+++|..|..+..+.
T Consensus 1708 kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~v 1743 (1758)
T KOG0994|consen 1708 KLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESV 1743 (1758)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Confidence 334466777666666677888888888887776554
No 88
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.62 E-value=5.3 Score=42.08 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHHHHHHH
Q 022021 38 AKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYT 117 (304)
Q Consensus 38 ~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~El~ 117 (304)
+....+.-++.+.+..++.+......++.+++..+++|+..|+++++++.. .-+...|+.
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~--------------------~~~~~rei~ 477 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRD--------------------KVRKDREIR 477 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHhhhHHHH
Confidence 555666666667777777777777777777777777777777777655110 111233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 118 FIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 118 ~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
.+..++..|+.++......|++|++.+
T Consensus 478 ~~~~~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 478 ARDRRIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666655555555555444
No 89
>PRK02119 hypothetical protein; Provisional
Probab=90.60 E-value=0.78 Score=35.29 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 115 EYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 115 El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
|...+++++.+||.++.-++..|+.|-..+..
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~ 34 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIE 34 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788999999988888777766655544
No 90
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=90.57 E-value=0.24 Score=48.25 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHH
Q 022021 32 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREI 111 (304)
Q Consensus 32 ~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~ 111 (304)
+..+|+..||...+.|...++.+...+.+....+..+.--+..+..++..+...+...+..-+.+..-++.
T Consensus 32 ~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~--------- 102 (326)
T PF04582_consen 32 PIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSS--------- 102 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh---------
Confidence 46678888888888888887777777777777777666666666666666554333322211111110100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 022021 112 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRL 158 (304)
Q Consensus 112 ~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl 158 (304)
+..-+..+...+..|+..+..+.-+|.-|+..++...-+...||+|+
T Consensus 103 lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV 149 (326)
T PF04582_consen 103 LSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRV 149 (326)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHH
Confidence 01111222234445555566666666666666665555566777775
No 91
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=90.39 E-value=11 Score=39.20 Aligned_cols=65 Identities=22% Similarity=0.283 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 022021 116 YTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLA 183 (304)
Q Consensus 116 l~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~ 183 (304)
+...+.+...+.++++...+.|..|..++... ..-||.+|..|||+|+.=..+|..-..++.+|.
T Consensus 450 L~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TT---r~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 450 LESAEKEKESLEEELKEANQNISRLQDELETT---RRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444456666666666677777666652 267999999999999998888888877776654
No 92
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=90.32 E-value=33 Score=37.90 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 9 QTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 9 ~~~~~~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
+.....++..++-.+-.-.+...+|-.|-..++..+.++.-+++..++..++...+...|+.+...+...-..+++
T Consensus 332 ~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~ek 407 (980)
T KOG0980|consen 332 ELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEK 407 (980)
T ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555556677888888889999999999888888888888888888888777776665555443
No 93
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=89.76 E-value=16 Score=33.52 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 022021 37 LAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 89 (304)
Q Consensus 37 ~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~ 89 (304)
...|+.....-.-.+..|+.++...+.++..+++++..++.++..|+..+...
T Consensus 54 ~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 54 IQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 33444444445557788899999999999999999999999999999865554
No 94
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.74 E-value=25 Score=35.68 Aligned_cols=49 Identities=22% Similarity=0.201 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 31 MEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAH 79 (304)
Q Consensus 31 ~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l 79 (304)
.+...+..+|+.+..++.+.++.+...+-+....+..++..++.++..+
T Consensus 55 ~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 55 REQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444333
No 95
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.66 E-value=19 Score=37.74 Aligned_cols=136 Identities=24% Similarity=0.209 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhh--hHHHhh----hchhHHHHHHHHHHHHHHHHHHHHH
Q 022021 54 AQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL--KRLAAS----KGVEFEREILEAEYTFIADKIIQLE 127 (304)
Q Consensus 54 ~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~--~~i~t~----~~~e~E~e~~r~El~~l~~~~~~Le 127 (304)
+--.|..-..+|..|+.+|..|++|+.-++...+.-...-..+ .++.+. .....++..+..|+..+.+++.+|.
T Consensus 47 LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr 126 (546)
T KOG0977|consen 47 LNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELR 126 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3334444567788999999999999999986422221111111 122111 1222357777888888889998888
Q ss_pred HHHHHHHHHHHHHHHHhcC----CCh--h-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 022021 128 DKAKKLEGNIEMTRKEIED----PTE--V-EIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 189 (304)
Q Consensus 128 ~~l~~~e~eI~~lr~~l~~----~s~--~-~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl 189 (304)
.+|.+.++....-|..+.. .+. + ...+..|++.|-|-+..=-.+...+..+...+..+|+..
T Consensus 127 ~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E 195 (546)
T KOG0977|consen 127 KKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDE 195 (546)
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8888887777666666653 122 2 233444888887777666666666666666666666653
No 96
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=89.64 E-value=7.1 Score=36.52 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 30 RMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAH 79 (304)
Q Consensus 30 r~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l 79 (304)
+.+...|+-.++.++.....+|...+..+...-.++..+++.-..|+...
T Consensus 7 k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~ 56 (246)
T PF00769_consen 7 KQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKR 56 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777776666666555555555544444444433
No 97
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=89.54 E-value=24 Score=38.04 Aligned_cols=48 Identities=25% Similarity=0.205 Sum_probs=33.7
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 18 AFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQV 65 (304)
Q Consensus 18 a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~ 65 (304)
++..=+..-+-+-.+|.-|+.-++.++.+|...|...++.-++...+|
T Consensus 588 qv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v 635 (961)
T KOG4673|consen 588 QVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQV 635 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444444555556667788888888888888888888777776665
No 98
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=89.43 E-value=3.3 Score=38.78 Aligned_cols=42 Identities=29% Similarity=0.301 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 44 NADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 44 n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
.-|+-.-+..|..++++...+-++|...++.++.....+|.+
T Consensus 130 ~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~er 171 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQER 171 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777777777777777776544
No 99
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=88.86 E-value=20 Score=33.48 Aligned_cols=47 Identities=26% Similarity=0.299 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 37 LAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 37 ~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
...|+.....+.......+..|......+..|.++....+..-..|.
T Consensus 7 k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le 53 (246)
T PF00769_consen 7 KQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELE 53 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555444443
No 100
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.80 E-value=5.3 Score=38.68 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 022021 133 LEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 191 (304)
Q Consensus 133 ~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~ 191 (304)
+.++|..+..+...-...+..+=+.++.+--.|++.+...+++........-+|+++++
T Consensus 76 l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 76 LDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333223345666677788888888888889998888888888888875
No 101
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.76 E-value=4.4 Score=39.28 Aligned_cols=84 Identities=23% Similarity=0.196 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 022021 111 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 190 (304)
Q Consensus 111 ~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~ 190 (304)
.+..|+..++.+..++..++.+++.+-+.+.+++..-......++..-...-...-..|-++-.+..+..++..|++...
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~ 126 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYAS 126 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555554422122223222223333333344444444445555555555544
Q ss_pred hhHh
Q 022021 191 RLLD 194 (304)
Q Consensus 191 ~~~~ 194 (304)
..++
T Consensus 127 ~~L~ 130 (314)
T PF04111_consen 127 NQLD 130 (314)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 102
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=88.70 E-value=49 Score=37.65 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Q 022021 158 LGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL 192 (304)
Q Consensus 158 l~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~~ 192 (304)
=+.|++.|++=-..+..+..+.....-+++++.+.
T Consensus 267 N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~ 301 (1109)
T PRK10929 267 NRELSQALNQQAQRMDLIASQQRQAASQTLQVRQA 301 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777765556666665443
No 103
>PRK00736 hypothetical protein; Provisional
Probab=88.53 E-value=1.3 Score=33.62 Aligned_cols=41 Identities=15% Similarity=0.279 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 022021 118 FIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRL 158 (304)
Q Consensus 118 ~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl 158 (304)
++++++.+||.++.-++..|+.|-..+..+......|.+++
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql 42 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKL 42 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888988888888877777665554333334444444
No 104
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=88.50 E-value=30 Score=39.27 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 39 KLETANADLARALAAAQKKLEMETNQV 65 (304)
Q Consensus 39 ~Le~~n~~la~ala~~q~~l~~~~~~~ 65 (304)
+|+.........++..|+.+...+.+.
T Consensus 106 ~Leq~l~~~~~~L~~~q~~l~~~~~~~ 132 (1109)
T PRK10929 106 ALEQEILQVSSQLLEKSRQAQQEQDRA 132 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344444444444444444444444444
No 105
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=88.28 E-value=7.4 Score=33.88 Aligned_cols=61 Identities=16% Similarity=0.323 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 117 TFIADKIIQLEDKAKKLEGNIEMTRKEIED--PTEVEIELKRRLGQLTDHLIQKQAQVEALSS 177 (304)
Q Consensus 117 ~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~--~s~~~~elEkRl~~LTe~Li~KQtqlEsl~s 177 (304)
..+..++.+|++++..+..++..|+.++.. ..+...++...+.+|...+-.-+..|+.+.+
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555555555555543 2233467777765555555555555555543
No 106
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.09 E-value=38 Score=35.74 Aligned_cols=59 Identities=25% Similarity=0.380 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CCh-hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 022021 122 KIIQLEDKAKKLEGNIEMTRKEIED-PTE-VEIELKRRLGQLTDHLIQKQAQVEALSSEKA 180 (304)
Q Consensus 122 ~~~~Le~~l~~~e~eI~~lr~~l~~-~s~-~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~ 180 (304)
++..+-+++++++.+|..+...+.. |.+ ....|.+++..+...+-.-+..++.+..+..
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~ 452 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLE 452 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778888888888888876 552 3344444444444444444444444443333
No 107
>PRK04325 hypothetical protein; Provisional
Probab=87.89 E-value=1.7 Score=33.44 Aligned_cols=41 Identities=20% Similarity=0.145 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 022021 118 FIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRL 158 (304)
Q Consensus 118 ~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl 158 (304)
.+++++.+||.++.-++..|+.|-..+..+......|++++
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql 46 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQL 46 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888888777665554332233334443
No 108
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.87 E-value=5.2 Score=35.76 Aligned_cols=37 Identities=30% Similarity=0.400 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 110 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 110 e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
..++.++..++.++..++.+++.....|+.++.++..
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~ 155 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQA 155 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666666666666655543
No 109
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=87.47 E-value=71 Score=38.10 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 39 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 39 ~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
+|+..+..|..-|..-+........++.....+++.++..+..|++
T Consensus 707 tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKq 752 (1822)
T KOG4674|consen 707 TLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQ 752 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666666666666666666666654
No 110
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=87.44 E-value=18 Score=34.51 Aligned_cols=107 Identities=16% Similarity=0.160 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cccCCCcchhhhHHHhh-h
Q 022021 29 TRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR----NSNTHQTGIYLKRLAAS-K 103 (304)
Q Consensus 29 Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~----~~~~~~~~~~~~~i~t~-~ 103 (304)
.+++...=--++++.++.....+..++..+....+..+.++.-+.+||...+.|.+- +-...+.+..+++.|.. .
T Consensus 71 l~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnA 150 (333)
T KOG1853|consen 71 LTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNA 150 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 344444455678999999999999999999999999999999999999877777542 11111122233443321 1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 104 GVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEM 139 (304)
Q Consensus 104 ~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~ 139 (304)
-.|.|.+ |-..+-+.+++|.++++++.++++-
T Consensus 151 fLESELd----Eke~llesvqRLkdEardlrqelav 182 (333)
T KOG1853|consen 151 FLESELD----EKEVLLESVQRLKDEARDLRQELAV 182 (333)
T ss_pred HHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122211 1122335666777777777766653
No 111
>PRK00295 hypothetical protein; Provisional
Probab=87.30 E-value=1.7 Score=32.94 Aligned_cols=40 Identities=13% Similarity=0.280 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 022021 119 IADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRL 158 (304)
Q Consensus 119 l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl 158 (304)
+++++.+||.++.-++..|+.|-..+..+......|++++
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql 42 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQM 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888777776655544332333344444
No 112
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=87.15 E-value=50 Score=36.05 Aligned_cols=68 Identities=16% Similarity=0.147 Sum_probs=49.7
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHH-HHHHHHHHHHHHHHHHHH
Q 022021 102 SKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKR-RLGQLTDHLIQKQAQVEA 174 (304)
Q Consensus 102 ~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEk-Rl~~LTe~Li~KQtqlEs 174 (304)
++..+.|-.++|.|+...-..+..++-++...+.|-+.|.-.+.+ .+-|- ||+.||..|-.-++.+=+
T Consensus 489 kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQ-----rDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 489 KQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQ-----RDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556677778888888888888888888888888777777765544 33344 888888888666666544
No 113
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=87.01 E-value=26 Score=33.72 Aligned_cols=61 Identities=26% Similarity=0.266 Sum_probs=41.1
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhh
Q 022021 25 RHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQV-------AELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 25 ~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~-------~~l~q~v~~lE~~l~~l~~~ 85 (304)
-|+..+|.|.+|=..|-..---+..+|.+.+..++...+++ +.|..++++....++..+++
T Consensus 88 ~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkR 155 (338)
T KOG3647|consen 88 LHKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKR 155 (338)
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888899999977776666666777777666666655544 45555666666666666555
No 114
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=86.87 E-value=1.5 Score=33.07 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 119 IADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 119 l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
+++++.+||.++.-++..|+.|-..+..
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~ 29 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTE 29 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888887777777766555444
No 115
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=86.74 E-value=22 Score=31.42 Aligned_cols=111 Identities=22% Similarity=0.264 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchh--hhHHHhhhchhHHHHHHHHH
Q 022021 38 AKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIY--LKRLAASKGVEFEREILEAE 115 (304)
Q Consensus 38 ~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~--~~~i~t~~~~e~E~e~~r~E 115 (304)
..|+....++-.+++.+...+++...++....+.+..-...++.+ -..+++ +..+.+... =++.+..+
T Consensus 18 ~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m-------~~gg~~f~i~~~~~~~~---~r~~l~~~ 87 (158)
T PF09486_consen 18 RRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAM-------MTGGAPFSIDEYLALRR---YRDVLEER 87 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HcCCCCccHHHHHHHHH---HHHHHHHH
Confidence 344444555555555555555555555554444444444443333 222222 333333221 14556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 022021 116 YTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRL 158 (304)
Q Consensus 116 l~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl 158 (304)
...+++.+..++..+.....+|..++..|..-.....-|.+|+
T Consensus 88 ~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~ 130 (158)
T PF09486_consen 88 VRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERI 130 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 6667777777777777777777777777754222234455554
No 116
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=86.70 E-value=2.6 Score=30.60 Aligned_cols=44 Identities=25% Similarity=0.241 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 12 MMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQ 55 (304)
Q Consensus 12 ~~~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q 55 (304)
+-|....+..|+.+++..+..|-.|+.+|+.+|..|-..|...+
T Consensus 6 l~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 6 LEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44666788999999999999999999999999999999888765
No 117
>PRK04406 hypothetical protein; Provisional
Probab=86.69 E-value=2.4 Score=32.78 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 022021 118 FIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRL 158 (304)
Q Consensus 118 ~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl 158 (304)
.+++++.+||.++.-++..|+.|-..+..+......|.+++
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql 48 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQM 48 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888777776655544332233333333
No 118
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=86.65 E-value=26 Score=32.23 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 022021 31 MEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 88 (304)
Q Consensus 31 ~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~ 88 (304)
.+.-.|+.+......+....|+.....+.........+++.....-..+..+..++..
T Consensus 81 ~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 81 EELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQN 138 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444444444444444444444444444444444444444444433
No 119
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.32 E-value=25 Score=36.06 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022021 151 EIELKRRLGQLTDHLIQKQ 169 (304)
Q Consensus 151 ~~elEkRl~~LTe~Li~KQ 169 (304)
..+|+.+++.|+=.|=.+|
T Consensus 437 I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 437 ITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHhHheehhhhh
Confidence 4455555555555444333
No 120
>PRK11281 hypothetical protein; Provisional
Probab=86.29 E-value=12 Score=42.30 Aligned_cols=46 Identities=28% Similarity=0.221 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 38 AKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 38 ~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
.+||....++...++..|..+.+.+.++..++.+-+.....+.+.+
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~ 169 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANS 169 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 4455555555555556666666665555555555554444443333
No 121
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=86.15 E-value=51 Score=35.11 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 022021 125 QLEDKAKKLEGNIEMTRKEIEDP 147 (304)
Q Consensus 125 ~Le~~l~~~e~eI~~lr~~l~~~ 147 (304)
+|..++..++..+..++..++.+
T Consensus 199 eL~~kl~~l~~~l~~~~e~le~K 221 (617)
T PF15070_consen 199 ELQKKLGELQEKLHNLKEKLELK 221 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555555555555555443
No 122
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=86.13 E-value=31 Score=35.49 Aligned_cols=50 Identities=24% Similarity=0.254 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 36 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 36 R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
--.+++..+.+|..++++.|+.|++...+-.-|+-+++++..+.-.|+.+
T Consensus 384 EKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEr 433 (527)
T PF15066_consen 384 EKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQER 433 (527)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHH
Confidence 33456777899999999999999999999999999999999999988864
No 123
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.03 E-value=49 Score=34.83 Aligned_cols=59 Identities=24% Similarity=0.292 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHH---HHHHHHHHHHHHHHHHHHhhhhh
Q 022021 121 DKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKR---RLGQLTDHLIQKQAQVEALSSEK 179 (304)
Q Consensus 121 ~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEk---Rl~~LTe~Li~KQtqlEsl~sEk 179 (304)
.++..-|+++.++.+++..|+.++..+.-+-.+.|+ -...|+..|-.=|-++++++.+.
T Consensus 301 ~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~v 362 (581)
T KOG0995|consen 301 SEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEV 362 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555556666666442111122222 22344555555555555555443
No 124
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=85.96 E-value=24 Score=31.14 Aligned_cols=100 Identities=26% Similarity=0.318 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHh--hhchhHHHHHHHH
Q 022021 38 AKLETANADLARALAAAQKKLEM-ETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAA--SKGVEFEREILEA 114 (304)
Q Consensus 38 ~~Le~~n~~la~ala~~q~~l~~-~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t--~~~~e~E~e~~r~ 114 (304)
.+++..--.+..+++.+...+.. ...+.+.++..++.|..+++.+++++..- +..+-+ .-+...|+.+.+.
T Consensus 47 ~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~e------i~~l~a~~klD~n~eK~~~r~ 120 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREE------INKLRAEVKLDLNLEKGRIRE 120 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHH
Confidence 44555555555555555555543 24566677777777777777776542211 011111 2233345666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 115 EYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 115 El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
|...++.++.++..++ ..+|..+|.++.+
T Consensus 121 e~~~~~~ki~e~~~ki---~~ei~~lr~~iE~ 149 (177)
T PF07798_consen 121 EQAKQELKIQELNNKI---DTEIANLRTEIES 149 (177)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 7777777766665553 4455666666554
No 125
>PRK02793 phi X174 lysis protein; Provisional
Probab=85.92 E-value=2.6 Score=32.30 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 119 IADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 119 l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
+++++.+||.++.-++..|+.|-..+..
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~ 33 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTA 33 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888777766655544
No 126
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=85.87 E-value=34 Score=36.32 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTE 149 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~ 149 (304)
...+..|....+..|..|+.+++....+|+.++..+...+|
T Consensus 305 ~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sD 345 (629)
T KOG0963|consen 305 EASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSD 345 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34556666677777888888888888888888888766544
No 127
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=85.70 E-value=77 Score=36.76 Aligned_cols=38 Identities=32% Similarity=0.400 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 46 DLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 46 ~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
++...+..++..++....+...+++....++..+..++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~ 317 (1353)
T TIGR02680 280 QLSRDLGRARDELETAREEERELDARTEALEREADALR 317 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444443
No 128
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=85.39 E-value=21 Score=32.61 Aligned_cols=89 Identities=18% Similarity=0.254 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHH----HHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHH
Q 022021 37 LAKLETANADLARALAAAQKKLEME----TNQV----AELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFE 108 (304)
Q Consensus 37 ~~~Le~~n~~la~ala~~q~~l~~~----~~~~----~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E 108 (304)
++.|+-+.++|.+.|+.+++..+.. .... .+++++++=++..+.++.. +.++.+..
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~---~~~~~~~~------------- 161 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE---GRSKSGKN------------- 161 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc---cCCCCCCC-------------
Confidence 4568888888888888888887762 2222 3444554545555555432 22222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTR 141 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr 141 (304)
...++..+..+++.+..||.=++...++++.|+
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 223456677777888888888888888888876
No 129
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=85.35 E-value=22 Score=36.89 Aligned_cols=30 Identities=10% Similarity=0.361 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 112 LEAEYTFIADKIIQLEDKAKKLEGNIEMTR 141 (304)
Q Consensus 112 ~r~El~~l~~~~~~Le~~l~~~e~eI~~lr 141 (304)
.+.-++.|.+-+..+-+++.++.++|+.||
T Consensus 485 YE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 485 YEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566788888999999999999999998
No 130
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=85.21 E-value=13 Score=34.49 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022021 109 REILEAEYTFIADKIIQLEDK 129 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~ 129 (304)
.+.+..||+.+.++...|+++
T Consensus 188 ~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 188 SEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHcccHHHHHHHHHHHHHHH
Confidence 334444555454555555444
No 131
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=84.87 E-value=52 Score=34.08 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=14.2
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhh
Q 022021 231 KKHIGSLLKQLDSIFLAGVVFLRR 254 (304)
Q Consensus 231 ~r~~~~al~~lD~~~l~~~r~lrr 254 (304)
..++..++..+|.+=-+=-..+.|
T Consensus 480 ~kkva~A~aqve~ak~se~e~l~k 503 (522)
T PF05701_consen 480 EKKVAAAMAQVEAAKASEKEILEK 503 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777765444444443
No 132
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.61 E-value=9.4 Score=34.94 Aligned_cols=31 Identities=26% Similarity=0.238 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 022021 151 EIELKRRLGQLTDHLIQKQAQVEALSSEKAT 181 (304)
Q Consensus 151 ~~elEkRl~~LTe~Li~KQtqlEsl~sEk~a 181 (304)
..+|+++..+|.+.|..-|+.++.+..+...
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4558888888888877777777776666544
No 133
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=84.60 E-value=30 Score=31.15 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 38 AKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 38 ~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
..|+....++...|..++..+.........++.++...+.....+..+
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777777777777777777654
No 134
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.43 E-value=77 Score=35.72 Aligned_cols=38 Identities=29% Similarity=0.475 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 022021 153 ELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 190 (304)
Q Consensus 153 elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~ 190 (304)
++++-+..+-.+|-+.-.++++|.++...+...+-.++
T Consensus 826 ~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~ 863 (1174)
T KOG0933|consen 826 ELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE 863 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444444555555555556666655555555554443
No 135
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=84.29 E-value=13 Score=39.38 Aligned_cols=69 Identities=28% Similarity=0.392 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCh-hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 022021 113 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED--PTE-VEIELKRRLGQLTDHLIQKQAQVEALSSEKAT 181 (304)
Q Consensus 113 r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~--~s~-~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~a 181 (304)
+.|.+.|+..+.+++.++.+++.+.+.++..+.. ..+ ....++.|+..|.-.|..|-..+|.|..+.+.
T Consensus 435 ~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 435 EEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAE 506 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444432 111 12224455555555555555555555554443
No 136
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=84.25 E-value=49 Score=33.34 Aligned_cols=87 Identities=14% Similarity=0.131 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Q 022021 4 MASELQTSMMETMDAFELEKQRHNN----TRMEALQLLAKLETANADLARALAAAQKKLEMETNQVA------------- 66 (304)
Q Consensus 4 ~~~~l~~~~~~~~~a~~~E~~~H~~----Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~------------- 66 (304)
+..+++..+-++..++..=++.|.. .......++..++.+.......+...+..++.....+.
T Consensus 169 ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~ 248 (498)
T TIGR03007 169 QIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVA 248 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccC
Confidence 4455666776666666666666643 12234566666666666666666666666655554432
Q ss_pred --HHHHHHHHHHHHHHHHhhhcccCC
Q 022021 67 --ELRQQTELKEVAHEELSQRNSNTH 90 (304)
Q Consensus 67 --~l~q~v~~lE~~l~~l~~~~~~~~ 90 (304)
.++.++..++..+..+..+..+-|
T Consensus 249 ~~~l~~~l~~l~~~l~~l~~~y~~~h 274 (498)
T TIGR03007 249 NSELDGRIEALEKQLDALRLRYTDKH 274 (498)
T ss_pred CCchHHHHHHHHHHHHHHHHHhcccC
Confidence 455666677777777765544444
No 137
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=84.24 E-value=65 Score=35.58 Aligned_cols=65 Identities=22% Similarity=0.298 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 022021 115 EYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 189 (304)
Q Consensus 115 El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl 189 (304)
|+..+..++..+++++..-..+|++--.++.++.....+++..| |+.++....+++++...++++
T Consensus 142 elE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~----------~tkl~e~~~en~~le~k~~k~ 206 (1265)
T KOG0976|consen 142 EIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEF----------QTKLAEANREKKALEEKLEKF 206 (1265)
T ss_pred HHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555666666666666666666655554555555555 344444445555444444443
No 138
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=84.13 E-value=44 Score=32.65 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=20.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 27 NNTRMEALQLLAKLETANADLARALAAAQKKLEM 60 (304)
Q Consensus 27 ~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~ 60 (304)
..|+.++.-|+..|+.+|.-|-..+..+......
T Consensus 19 ~~t~~~l~~~~~sL~qen~~Lk~El~~ek~~~~~ 52 (310)
T PF09755_consen 19 SATREQLRKRIESLQQENRVLKRELETEKARCKH 52 (310)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4566677777777777776665544444433333
No 139
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=84.08 E-value=1.3 Score=39.41 Aligned_cols=77 Identities=22% Similarity=0.189 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 7 ELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 7 ~l~~~~~~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
||+-+--.+|.++....+.=...|...-.-+..|..+|+-|-..++..+..+.....++..|.+.+..|+.-+...+
T Consensus 1 eL~~~~aq~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r 77 (181)
T PF09311_consen 1 ELGLGEAQVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKR 77 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHT------------------------------------------------
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhcc
Confidence 46666667788888888888888888888888999999999999999999998888888888888777777655444
No 140
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=83.92 E-value=12 Score=34.56 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 022021 108 EREILEAEYTFIADKI 123 (304)
Q Consensus 108 E~e~~r~El~~l~~~~ 123 (304)
|-||+-.|++.+++++
T Consensus 194 EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 194 EYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666666654
No 141
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.59 E-value=31 Score=36.38 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q 022021 115 EYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHL 165 (304)
Q Consensus 115 El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~L 165 (304)
+.+.+..-+..+..+.+|+..-|.+.-..+..++-... +++-+++++.|
T Consensus 670 ~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~--~~Q~~~iqsiL 718 (741)
T KOG4460|consen 670 QLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILS--AYQRKCIQSIL 718 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccc--HHHHHHHHHHH
Confidence 33344444445555555555444443333332222222 44555555554
No 142
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=83.39 E-value=36 Score=31.06 Aligned_cols=103 Identities=12% Similarity=0.207 Sum_probs=65.5
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHH
Q 022021 21 LEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLA 100 (304)
Q Consensus 21 ~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~ 100 (304)
.|...++..+.- .|++..+.....|+..-+-+++.+.....++..|+.-+...-.....+
T Consensus 86 AE~~Y~~F~~Qt--~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~v------------------ 145 (192)
T PF11180_consen 86 AEAIYRDFAQQT--ARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQV------------------ 145 (192)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 344444444433 466666666666766666777777776666666664433322222221
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 022021 101 ASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPT 148 (304)
Q Consensus 101 t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s 148 (304)
+.. ..-.++|...|..+-...+.+++++...|..|..+.+.+.
T Consensus 146 a~~-----Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~~~ 188 (192)
T PF11180_consen 146 AAR-----QQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQANEPI 188 (192)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 111 3344678888888888999999999999999998887643
No 143
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=83.26 E-value=48 Score=32.48 Aligned_cols=96 Identities=16% Similarity=0.142 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcc-------hhhhHHHhhhchhHHHHHHHHHHHHH
Q 022021 47 LARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTG-------IYLKRLAASKGVEFEREILEAEYTFI 119 (304)
Q Consensus 47 la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~-------~~~~~i~t~~~~e~E~e~~r~El~~l 119 (304)
+.+.|..|+.+-+.-+.-++.|++....++....++.......++.+ .++.+++.-. ....-.++.|+..+
T Consensus 14 L~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~s--re~Nk~L~~Ev~~L 91 (319)
T PF09789_consen 14 LSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSES--REQNKKLKEEVEEL 91 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHH--HHHHHHHHHHHHHH
Confidence 45678888888888888888888888888887777764333332111 1233333222 12234556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 120 ADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 120 ~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
.+++.+++..++-+...+.+.|...
T Consensus 92 rqkl~E~qGD~KlLR~~la~~r~~~ 116 (319)
T PF09789_consen 92 RQKLNEAQGDIKLLREKLARQRVGD 116 (319)
T ss_pred HHHHHHHhchHHHHHHHHHhhhhhh
Confidence 6777777777666666666655444
No 144
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=83.10 E-value=37 Score=31.00 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 115 EYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 115 El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
|-.++..++..|+++..++..++..+......
T Consensus 96 E~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~e 127 (193)
T PF14662_consen 96 EQQSLVAEIETLQEENGKLLAERDGLKKRSKE 127 (193)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHH
Confidence 33444455555555555555444444444433
No 145
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=82.94 E-value=33 Score=30.30 Aligned_cols=134 Identities=13% Similarity=0.192 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHH-HhhhchhH
Q 022021 29 TRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRL-AASKGVEF 107 (304)
Q Consensus 29 Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i-~t~~~~e~ 107 (304)
.|.+.+.=--..+.+...+.+.|..+...+.....+++.|...-...-..|..+.+...+++. .-+... -.+.....
T Consensus 14 sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE--~dik~AYe~A~~lQ~ 91 (159)
T PF05384_consen 14 SKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSE--EDIKEAYEEAHELQV 91 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCH--HHHHHHHHHHHHHHH
Confidence 344444444455666666666666666666666666666666666666666655444322221 111111 11222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 022021 108 EREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDH 164 (304)
Q Consensus 108 E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~ 164 (304)
+...++++-..|..+-..||..++.+...|++..+-+++=+....-|-..+..+++.
T Consensus 92 ~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~ 148 (159)
T PF05384_consen 92 RLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQ 148 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344455555556666677888888888888877666655444455555555555544
No 146
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=82.50 E-value=74 Score=34.06 Aligned_cols=31 Identities=16% Similarity=0.087 Sum_probs=21.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 27 NNTRMEALQLLAKLETANADLARALAAAQKK 57 (304)
Q Consensus 27 ~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~ 57 (304)
..+..-.-.|+.+++.+..+.+.++...+.+
T Consensus 193 ~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~ 223 (754)
T TIGR01005 193 TAAADFLAPEIADLSKQSRDAEAEVAAYRAQ 223 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677888888888888888777553
No 147
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.48 E-value=62 Score=33.28 Aligned_cols=74 Identities=23% Similarity=0.273 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 022021 118 FIADKIIQLEDKAKKLEGNIEMTRKEI----EDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 191 (304)
Q Consensus 118 ~l~~~~~~Le~~l~~~e~eI~~lr~~l----~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~ 191 (304)
.++.++.+++.++++..++...+|..- +++....+-|++--.++.+.+-.|+.++..|.....-|-|.||.-+.
T Consensus 379 ~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qqk 456 (493)
T KOG0804|consen 379 IVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQK 456 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhhh
Confidence 344566666666666666666555221 22333456666666677888889999999998888888888887544
No 148
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=82.35 E-value=32 Score=29.77 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 54 AQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 54 ~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
...+|.....+.+.+...|..||.+++..+..
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~ 39 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQEN 39 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Confidence 44566666677777777777777777766543
No 149
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=82.25 E-value=51 Score=32.04 Aligned_cols=14 Identities=29% Similarity=0.359 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 022021 129 KAKKLEGNIEMTRK 142 (304)
Q Consensus 129 ~l~~~e~eI~~lr~ 142 (304)
+...+..+|+.+++
T Consensus 247 ~k~e~~~~I~~ae~ 260 (312)
T smart00787 247 KKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 150
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=80.99 E-value=26 Score=35.96 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 113 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 113 r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
.+++..+..++.+++.++++++++|+.+++++..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 170 (525)
T TIGR02231 137 GSEIERLLTEDREAERRIRELEKQLSELQNELNA 170 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455566666777777777777777666644
No 151
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=80.84 E-value=57 Score=31.70 Aligned_cols=74 Identities=19% Similarity=0.285 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--Ch-----h----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 022021 116 YTFIADKIIQLEDKAKKLEGNIEMTRKEIEDP--TE-----V----EIELKRRLGQLTDHLIQKQAQVEALSSEKATLAF 184 (304)
Q Consensus 116 l~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~--s~-----~----~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~ 184 (304)
+....+.+.+++.++..+...|..+...+..+ +. + ..+.-.++..+|+.|-..|.+++...+-.+...-
T Consensus 83 i~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~ 162 (301)
T PF06120_consen 83 IAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQA 162 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555566666666666665555555442 11 1 2456678888888888888888887766555554
Q ss_pred HHHHH
Q 022021 185 RIEAV 189 (304)
Q Consensus 185 qLErl 189 (304)
.|..+
T Consensus 163 ~l~~~ 167 (301)
T PF06120_consen 163 TLNDL 167 (301)
T ss_pred HHHHH
Confidence 45443
No 152
>PRK00846 hypothetical protein; Provisional
Probab=80.53 E-value=5.6 Score=31.07 Aligned_cols=28 Identities=14% Similarity=0.327 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 119 IADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 119 l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
+++++.+||.++.-++..|+.|-..+..
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~ 38 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALAD 38 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578888888888888877777655544
No 153
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=80.44 E-value=45 Score=30.22 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=10.0
Q ss_pred HhhhhhHHHHHHHHHHHhhH
Q 022021 174 ALSSEKATLAFRIEAVSRLL 193 (304)
Q Consensus 174 sl~sEk~al~~qLErl~~~~ 193 (304)
.+..+...+...++++.+.+
T Consensus 168 ~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 168 EAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555443
No 154
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=80.31 E-value=1e+02 Score=34.21 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 15 TMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHE 80 (304)
Q Consensus 15 ~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~ 80 (304)
...-++..+.-|..-=...+-+..++|.+.+.|..+++.+|..+.+..-+++.+.....+++..+.
T Consensus 93 dv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLs 158 (1265)
T KOG0976|consen 93 DVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELS 158 (1265)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 334577778888888888889999999999999999999998888887777777776666666554
No 155
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=80.05 E-value=56 Score=31.11 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 114 AEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 114 ~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
+|+....+.+.+|++++..+.++|+.|+.+..+
T Consensus 193 kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~ 225 (258)
T PF15397_consen 193 KEIVQFREEIDELEEEIPQLRAEVEQLQAQAQD 225 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333333355666666666667777777666654
No 156
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=79.82 E-value=29 Score=34.94 Aligned_cols=80 Identities=23% Similarity=0.276 Sum_probs=56.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 2 CDMASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANA-----------DLARALAAAQKKLEMETNQVAELRQ 70 (304)
Q Consensus 2 ~~~~~~l~~~~~~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~-----------~la~ala~~q~~l~~~~~~~~~l~q 70 (304)
+.|-++||-+=.+..+++..-+.+--..--+|++|+++|+++.. .|.+.=..+.++|++++.+++.++.
T Consensus 298 arENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~keLeekkreleql~~ 377 (442)
T PF06637_consen 298 ARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKELEEKKRELEQLKM 377 (442)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899888888888777666666666789999999987653 3444445566666777777777766
Q ss_pred HHHHHHHHHHH
Q 022021 71 QTELKEVAHEE 81 (304)
Q Consensus 71 ~v~~lE~~l~~ 81 (304)
+++..-..++.
T Consensus 378 q~~v~~saLdt 388 (442)
T PF06637_consen 378 QLAVKTSALDT 388 (442)
T ss_pred HHHhhhhHHHH
Confidence 66555544443
No 157
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=79.69 E-value=15 Score=27.62 Aligned_cols=51 Identities=22% Similarity=0.190 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 022021 40 LETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 90 (304)
Q Consensus 40 Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~ 90 (304)
++....+|+..++-.+.-+++.+..+.....++..|+..+..|..++....
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555666666666666666666666666666666666666554443
No 158
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=79.48 E-value=24 Score=36.69 Aligned_cols=100 Identities=13% Similarity=0.095 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC-cchhhhHHHhhhchhHHHHHHHHHHH
Q 022021 39 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ-TGIYLKRLAASKGVEFEREILEAEYT 117 (304)
Q Consensus 39 ~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~-~~~~~~~i~t~~~~e~E~e~~r~El~ 117 (304)
.+..+..+...++...+..|+.++.++..+.+.+.+|.+.+.+++.+ .++.. ...-+..++..- ..=.+-+..|+.
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk-~k~~~~Ekeel~~~Lq~~--~da~~ql~aE~~ 278 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKK-IKYLRHEKEELDEHLQAY--KDAQRQLTAELE 278 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHH--HhhHHHHHHHHH
Confidence 34455566667778888888888888888888899999888888765 11111 111111221111 000122356666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 118 FIADKIIQLEDKAKKLEGNIEMTR 141 (304)
Q Consensus 118 ~l~~~~~~Le~~l~~~e~eI~~lr 141 (304)
.++++..+....+-..+.++..||
T Consensus 279 EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 279 ELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777777777666677777777666
No 159
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=79.38 E-value=65 Score=32.51 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHH--HHHHHHHHHHHHHHHHHHh
Q 022021 133 LEGNIEMTRKEIEDPTEVEIELKR--RLGQLTDHLIQKQAQVEAL 175 (304)
Q Consensus 133 ~e~eI~~lr~~l~~~s~~~~elEk--Rl~~LTe~Li~KQtqlEsl 175 (304)
...||.-||+++.. .....+|-. |.+.+-|.+=.=||.|..+
T Consensus 274 Hq~Ei~~LKqeLa~-~EEK~~Yqs~eRaRdi~E~~Es~qtRiskl 317 (395)
T PF10267_consen 274 HQNEIYNLKQELAS-MEEKMAYQSYERARDIWEVMESCQTRISKL 317 (395)
T ss_pred HHHHHHHHHHHHHh-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45677777777654 222334444 6666655544444444443
No 160
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=79.28 E-value=65 Score=31.35 Aligned_cols=45 Identities=11% Similarity=0.244 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 022021 44 NADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 88 (304)
Q Consensus 44 n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~ 88 (304)
+..+...++.+..+|.+.+..+++++.+++.++..+..++..+.+
T Consensus 69 ~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~ 113 (301)
T PF06120_consen 69 STQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAE 113 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555666666666666666677777777666666666544333
No 161
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=78.87 E-value=40 Score=28.67 Aligned_cols=69 Identities=17% Similarity=0.191 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 14 ETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 14 ~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l 82 (304)
+..+.+.....+..+.-.........|+..++++...++..+......+.++..+...+.....++..+
T Consensus 52 ~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 52 EQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL 120 (151)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444455555544444444444444444444444444444444333
No 162
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.55 E-value=1.2e+02 Score=34.20 Aligned_cols=40 Identities=23% Similarity=0.376 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 107 FEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 107 ~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
.|.+.+.+|+++.+..+..++.+++.+..++..++..+..
T Consensus 822 lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~ 861 (1174)
T KOG0933|consen 822 LEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDK 861 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556666666666666666666666666666555543
No 163
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=78.26 E-value=0.68 Score=50.59 Aligned_cols=170 Identities=25% Similarity=0.283 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchh-------h----h
Q 022021 29 TRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIY-------L----K 97 (304)
Q Consensus 29 Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~-------~----~ 97 (304)
.|..++.=--+|+....+|.-.+....+..++....+..++.++..+...++..++...+....... + .
T Consensus 540 ~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~ele 619 (859)
T PF01576_consen 540 ERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELE 619 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444345566666666655555555555555555555555555555444443321111110000 0 0
Q ss_pred HH------H--hhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHH-------HHHHHHHH
Q 022021 98 RL------A--ASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIEL-------KRRLGQLT 162 (304)
Q Consensus 98 ~i------~--t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~el-------EkRl~~LT 162 (304)
++ . +.+..+.|++-+..++..+...+..+....++++.+|..|..++..-.++...+ ......|+
T Consensus 620 e~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~ 699 (859)
T PF01576_consen 620 ELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLA 699 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 00 0 122333333333333444444445566667778888888888776522221222 22455677
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHhhcCC
Q 022021 163 DHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKP 198 (304)
Q Consensus 163 e~Li~KQtqlEsl~sEk~al~~qLErl~~~~~~~~~ 198 (304)
+-|..-|.....+-..+.+|+.++-.++..+.+..+
T Consensus 700 ~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~ 735 (859)
T PF01576_consen 700 EELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQ 735 (859)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888888888777766555433
No 164
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=77.68 E-value=1.4e+02 Score=34.37 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 33 ALQLLAKLETANADLARALAAAQKKLEMETNQVAEL 68 (304)
Q Consensus 33 a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l 68 (304)
...++.+.+.+..++.+-+...+.+++..+.+...+
T Consensus 499 ~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 499 VEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555554444444
No 165
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=77.45 E-value=1.2e+02 Score=34.67 Aligned_cols=145 Identities=26% Similarity=0.312 Sum_probs=83.5
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHH
Q 022021 18 AFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQV------------------AELRQQTELKEVAH 79 (304)
Q Consensus 18 a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~------------------~~l~q~v~~lE~~l 79 (304)
++.-+-.++.-..|.++.+.++=.+-.. +|+.||+-|+..+--- .+|+.++.....++
T Consensus 1004 aFNs~EA~~AK~QMDaIKqmIekKv~L~----~L~qCqdALeKqnIa~AL~ALn~IPSdKEms~Is~eLReQIq~~KQ~L 1079 (1439)
T PF12252_consen 1004 AFNSEEARQAKAQMDAIKQMIEKKVVLQ----ALTQCQDALEKQNIAGALQALNNIPSDKEMSKISSELREQIQSVKQDL 1079 (1439)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHH
Confidence 4455556677778888888887666666 8888888887663211 45666666777777
Q ss_pred HHHhhhcccCCCcchhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhc
Q 022021 80 EELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDK--------------AKKLEGNIEMTRKEIE 145 (304)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~--------------l~~~e~eI~~lr~~l~ 145 (304)
+.|++-+. .|+++ ..+..+.+...=+..+.+++..||.- +..+++||.-||++=.
T Consensus 1080 esLQRAV~---------TPVvt--d~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK~ 1148 (1439)
T PF12252_consen 1080 ESLQRAVV---------TPVVT--DAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEKI 1148 (1439)
T ss_pred HHHHHhhc---------ccccc--cHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 77764321 12221 12223333333344444555444432 2345666666666542
Q ss_pred ---CCCh-----hHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhh
Q 022021 146 ---DPTE-----VEIELKRRLGQLTDHLI-------QKQAQVEALSSEK 179 (304)
Q Consensus 146 ---~~s~-----~~~elEkRl~~LTe~Li-------~KQtqlEsl~sEk 179 (304)
..++ +..-||+||+.+...|+ .| ++..|..|+
T Consensus 1149 Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~eitK--qIsaLe~e~ 1195 (1439)
T PF12252_consen 1149 RMHSGTDKVDFSDIEKLEKQLQVIHTKLYDAYLVEITK--QISALEKEK 1195 (1439)
T ss_pred hhccCCCcccHHHHHHHHHHHHHhhhhhHHHHHHHHHH--HHHHHHhhC
Confidence 2121 36778899988877774 34 455555543
No 166
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=77.21 E-value=41 Score=31.20 Aligned_cols=55 Identities=24% Similarity=0.361 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 022021 120 ADKIIQLEDKAKKLEGNIEMTRKEIEDPT--EVEIELKRRLGQLTDHLIQKQAQVEALSSEKAT 181 (304)
Q Consensus 120 ~~~~~~Le~~l~~~e~eI~~lr~~l~~~s--~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~a 181 (304)
+++..+++.+++.++.+..+|+.-++... ++...+|++| -+-|.+||++...+..
T Consensus 131 T~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L-------~~v~~eIe~~~~~~~~ 187 (262)
T PF14257_consen 131 TEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIEREL-------SRVRSEIEQLEGQLKY 187 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 34556777778888888888887776532 2455666665 2345555555554443
No 167
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=77.10 E-value=41 Score=27.92 Aligned_cols=64 Identities=22% Similarity=0.217 Sum_probs=43.7
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 22 EKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 22 E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
|+.+--+.+++...|++.|+.+..++-.+...+...-+.....+..|+++.......+.+|+.+
T Consensus 3 e~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqak 66 (107)
T PF09304_consen 3 EKEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAK 66 (107)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556788888888888888888888888888888888888888888888888877777765
No 168
>PRK10698 phage shock protein PspA; Provisional
Probab=76.96 E-value=61 Score=29.81 Aligned_cols=33 Identities=12% Similarity=0.204 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 51 LAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 51 la~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
++.++..++.....++.|+..+..|+..+..++
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak 133 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETR 133 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444
No 169
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=76.36 E-value=1e+02 Score=32.13 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHhh
Q 022021 123 IIQLEDKAKKLEGNIEMTRKEIEDPTEVEIE-------LKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDE 195 (304)
Q Consensus 123 ~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~e-------lEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~~~~~ 195 (304)
...++.++..++..+..+...+.....+-.+ +.+++..+-..-..-+..++++..+-...+-+|+++...+..
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ 429 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHE 429 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888777777777664332333 333555555555666666667766655555666665544443
No 170
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.06 E-value=9 Score=29.61 Aligned_cols=29 Identities=24% Similarity=0.286 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 118 FIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 118 ~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
.+++|+.+||.++.-+++.|+.|-..+..
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laE 33 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAE 33 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888998888888888777655543
No 171
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=76.03 E-value=1.6e+02 Score=34.21 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 022021 151 EIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 189 (304)
Q Consensus 151 ~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl 189 (304)
..+++.+|.++-+.|-.-+..+.++..+..++.-.+.++
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a 961 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRA 961 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777776665555555554
No 172
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.99 E-value=1.4e+02 Score=33.52 Aligned_cols=80 Identities=26% Similarity=0.424 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-Ch-------hHHHHHHHHHHHHHHHHH--------H------HHHHHHh
Q 022021 118 FIADKIIQLEDKAKKLEGNIEMTRKEIEDP-TE-------VEIELKRRLGQLTDHLIQ--------K------QAQVEAL 175 (304)
Q Consensus 118 ~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~-s~-------~~~elEkRl~~LTe~Li~--------K------QtqlEsl 175 (304)
+++.++..+.+++..++-+++.||.++.++ ++ .-+.||.+=.-|-|.||. | |..+|..
T Consensus 329 sLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k 408 (1243)
T KOG0971|consen 329 SLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKK 408 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 455566666666677788888888888652 11 134555544444555542 2 4568888
Q ss_pred hhhhHHHHHHHHHHHhhHhhcC
Q 022021 176 SSEKATLAFRIEAVSRLLDENK 197 (304)
Q Consensus 176 ~sEk~al~~qLErl~~~~~~~~ 197 (304)
.+|.+.|..+-|++++..++..
T Consensus 409 ~sE~~eL~r~kE~Lsr~~d~aE 430 (1243)
T KOG0971|consen 409 NSELEELRRQKERLSRELDQAE 430 (1243)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877665443
No 173
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=75.95 E-value=59 Score=29.18 Aligned_cols=33 Identities=33% Similarity=0.295 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 50 ALAAAQKKLEMETNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 50 ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l 82 (304)
+....+..++..+.+++.++..++.++..++..
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666655
No 174
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=75.88 E-value=45 Score=36.23 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
.+++-+|+.+...++.+++-.-.++..+|+.||.++
T Consensus 218 kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~ 253 (916)
T KOG0249|consen 218 KNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGEL 253 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 355666666666655544444344444444444444
No 175
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=75.50 E-value=1.6e+02 Score=33.93 Aligned_cols=13 Identities=15% Similarity=-0.000 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHH
Q 022021 263 LVYLVCLHLWVIY 275 (304)
Q Consensus 263 ~~Y~v~LHl~V~~ 275 (304)
..|++++|=|=.+
T Consensus 905 t~~~~g~hRqe~~ 917 (1317)
T KOG0612|consen 905 TKDVLGLHRQELT 917 (1317)
T ss_pred HHHHHHHHHHHHH
Confidence 6889999976543
No 176
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=75.49 E-value=1.1e+02 Score=32.23 Aligned_cols=32 Identities=13% Similarity=0.063 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 022021 60 METNQVAELRQQTELKEVAHEELSQRNSNTHQ 91 (304)
Q Consensus 60 ~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~ 91 (304)
....++..+...+..++..++.+.+++..+..
T Consensus 388 ~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~ 419 (650)
T TIGR03185 388 ELQDAKSQLLKELRELEEELAEVDKKISTIPS 419 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34567788888888999999999888766543
No 177
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=75.15 E-value=85 Score=30.58 Aligned_cols=65 Identities=15% Similarity=0.252 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHhhc
Q 022021 132 KLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDEN 196 (304)
Q Consensus 132 ~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~~~~~~ 196 (304)
.+....+.|..+++..-.-..-|+..+|..+|.|-.|--.+|++..+.+--..|+..+++-++..
T Consensus 141 ~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne 205 (305)
T PF14915_consen 141 NLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNE 205 (305)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444555555665422234678889999999999999999999999988888888887765543
No 178
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=74.94 E-value=69 Score=29.47 Aligned_cols=11 Identities=9% Similarity=0.060 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 022021 268 CLHLWVIYILL 278 (304)
Q Consensus 268 ~LHl~V~~~L~ 278 (304)
+|.-=|.++.+
T Consensus 263 lLn~nI~~L~~ 273 (302)
T PF10186_consen 263 LLNKNIAQLCF 273 (302)
T ss_pred HHHHHHHHHHH
Confidence 33333444444
No 179
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=74.92 E-value=1e+02 Score=31.83 Aligned_cols=41 Identities=20% Similarity=0.396 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 022021 151 EIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 191 (304)
Q Consensus 151 ~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~ 191 (304)
.++.++.++-|-+.|..-|..|..-..||.+|.++|+++..
T Consensus 385 Knd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~ 425 (527)
T PF15066_consen 385 KNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKA 425 (527)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 57889999999999999999999999999999999999864
No 180
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=74.75 E-value=85 Score=30.40 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 60 METNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 60 ~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
-...++.++++++...|..+.+++.+
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666666666666655
No 181
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=74.73 E-value=82 Score=30.23 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH-------HHHHHHHHHHhh
Q 022021 114 AEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDH-------LIQKQAQVEALS 176 (304)
Q Consensus 114 ~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~-------Li~KQtqlEsl~ 176 (304)
.+++.+.+.-..|.+-++++++--..|.+.--..--...++|.||.+-++. |..||..+|++.
T Consensus 98 ddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvq 167 (333)
T KOG1853|consen 98 DDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQ 167 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333333333334555555555444433322212122467899999665442 455555555544
No 182
>PRK09343 prefoldin subunit beta; Provisional
Probab=74.64 E-value=49 Score=27.56 Aligned_cols=44 Identities=20% Similarity=0.142 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 40 LETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 40 Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
+..+.++....+..+|..+.....+...+.......+..+.+|.
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~ 48 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELE 48 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566667777777777777777777777677777777663
No 183
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=74.44 E-value=68 Score=29.10 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 14 ETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVA 66 (304)
Q Consensus 14 ~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~ 66 (304)
+.+..++.|...-...-...-....++..+|..|..-|..++.+.++...++.
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~ 79 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLK 79 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 55555666655554444444445556666666666666666665555544443
No 184
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=73.47 E-value=1.1e+02 Score=31.18 Aligned_cols=54 Identities=20% Similarity=0.211 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 32 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 32 ~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
+--+|+.+|+++.++-+++....-..+....++...++-++.++|+.+..|+..
T Consensus 10 ~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e 63 (459)
T KOG0288|consen 10 ENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEE 63 (459)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888888888888888888888888888888888999999888764
No 185
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=73.44 E-value=21 Score=25.00 Aligned_cols=40 Identities=18% Similarity=0.360 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 105 VEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 105 ~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
.|.+.+.+|..|..+...+..|..+...+..+|..|+..+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556778888888888888888888888888888777654
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=73.07 E-value=15 Score=34.66 Aligned_cols=51 Identities=16% Similarity=0.231 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 34 LQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 34 ~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
-.|++.|+.....-...+..++..|+..+.++..|+-+++.+..++..+++
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 356666666666666677777788888888888888887777777777654
No 187
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=73.05 E-value=45 Score=34.11 Aligned_cols=106 Identities=17% Similarity=0.275 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHHHHHHHH--HHHHHHHH
Q 022021 49 RALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTF--IADKIIQL 126 (304)
Q Consensus 49 ~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~El~~--l~~~~~~L 126 (304)
+.++.++-.....+..+++|..-|..++....=.|.+.+++-....++..|+-+. .+...+||.+ ++-++.+.
T Consensus 336 k~~~e~~~~~~~kk~~~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~LqrI~~aK-----~~k~EEEYas~~~kl~l~ea 410 (446)
T PF07227_consen 336 KEVAELQFERQRKKPQIEELESIVRIKQAEAKMFQLKADEARREAEGLQRIALAK-----SEKIEEEYASRYLKLRLNEA 410 (446)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHhhhhHHH
Confidence 4445555555555667777777777666666655555444444444556665555 4455667764 45567899
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 022021 127 EDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLG 159 (304)
Q Consensus 127 e~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~ 159 (304)
|++-++..++|+.+.+.-..+-+....++.-|+
T Consensus 411 ee~r~~~~eelk~~e~s~~~~~~mk~rM~~~I~ 443 (446)
T PF07227_consen 411 EEERKKKFEELKVLENSHRDYDNMKMRMQSEIQ 443 (446)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 999999999999887665554333444444443
No 188
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=72.79 E-value=43 Score=26.13 Aligned_cols=94 Identities=21% Similarity=0.264 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcc---hhhhHHHhhhchhHHHHHHHHHHHHHHHHH
Q 022021 47 LARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTG---IYLKRLAASKGVEFEREILEAEYTFIADKI 123 (304)
Q Consensus 47 la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~---~~~~~i~t~~~~e~E~e~~r~El~~l~~~~ 123 (304)
....+..+...+.....+...+.......+..+..|.. ..+.. -++.++.-....+.=.+.++.....++.++
T Consensus 3 ~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~----l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i 78 (106)
T PF01920_consen 3 LQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEK----LDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEI 78 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----SSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666666666666543 22110 011111111111111333444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 022021 124 IQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 124 ~~Le~~l~~~e~eI~~lr~~l 144 (304)
..++.+...++.++..++..+
T Consensus 79 ~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 79 KKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555444
No 189
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=72.74 E-value=10 Score=36.98 Aligned_cols=83 Identities=22% Similarity=0.311 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Q 022021 113 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL 192 (304)
Q Consensus 113 r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~~ 192 (304)
.+++...++++...+.++.+++..|+.|+.+..........++..+......|-.=+.-+.+|.+|+.-|.-+++.+...
T Consensus 227 ~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~ 306 (344)
T PF12777_consen 227 EAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQ 306 (344)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 33444555666667777777777777777777654444667777777777777777888888888887777777777664
Q ss_pred Hhh
Q 022021 193 LDE 195 (304)
Q Consensus 193 ~~~ 195 (304)
...
T Consensus 307 ~~~ 309 (344)
T PF12777_consen 307 LKN 309 (344)
T ss_dssp HHH
T ss_pred hcc
Confidence 443
No 190
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.50 E-value=64 Score=27.97 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 50 ALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 50 ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
.+..+..++.+...++..++..+..++..+..|.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666667777777777777777777777664
No 191
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=71.78 E-value=1.5e+02 Score=31.81 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHH
Q 022021 166 IQKQAQVEALSSEKATLAFRIEA 188 (304)
Q Consensus 166 i~KQtqlEsl~sEk~al~~qLEr 188 (304)
-.++.++..|..+....+-.++.
T Consensus 372 ~~~~~e~~~L~Re~~~~~~~Y~~ 394 (754)
T TIGR01005 372 GEQQVDLDALQRDAAAKRQLYES 394 (754)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666544444444
No 192
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=71.75 E-value=1e+02 Score=29.89 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 121 DKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 121 ~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
..+..|+.++++...++++.....
T Consensus 109 kqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 109 KQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555555555444433
No 193
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=71.68 E-value=53 Score=26.66 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 45 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 45 ~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l 82 (304)
+++...+..++..+.....+...+.......+..+.+|
T Consensus 6 q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL 43 (110)
T TIGR02338 6 QNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEEL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666665
No 194
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=71.41 E-value=1.3e+02 Score=31.12 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022021 43 ANADLARALAAAQKKLEMETNQV 65 (304)
Q Consensus 43 ~n~~la~ala~~q~~l~~~~~~~ 65 (304)
....+.+.+...+.++.....++
T Consensus 212 ~~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 212 DAEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555
No 195
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=71.37 E-value=1.3e+02 Score=30.95 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 116 YTFIADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 116 l~~l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
+..+-+++.+.+.+-...++-|+.||+++.
T Consensus 355 ~~rm~d~Lrrfq~ekeatqELieelrkele 384 (502)
T KOG0982|consen 355 RVRMNDILRRFQEEKEATQELIEELRKELE 384 (502)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334455555555555555556666665553
No 196
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=71.36 E-value=1.2e+02 Score=30.55 Aligned_cols=69 Identities=12% Similarity=0.259 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CC----hhHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHh
Q 022021 123 IIQLEDKAKKLEGNIEMTRKEIED-PT----EVEIELKRRLGQLTDHLI-QKQAQVEALSSEKATLAFRIEAVSR 191 (304)
Q Consensus 123 ~~~Le~~l~~~e~eI~~lr~~l~~-~s----~~~~elEkRl~~LTe~Li-~KQtqlEsl~sEk~al~~qLErl~~ 191 (304)
+.+++.++..++.+|..++.++.. +. .+..+.+.|+.++-..-. .=+.+++....+...++.+++.++.
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566655555543 11 122334455555443333 3455555566666666666666554
No 197
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=71.19 E-value=76 Score=28.51 Aligned_cols=50 Identities=34% Similarity=0.357 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 33 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 33 a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l 82 (304)
|+.|...++.....|...+......++.....+..++.++..++.....|
T Consensus 89 al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 89 ALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444333
No 198
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=71.10 E-value=1.1e+02 Score=30.18 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH--hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Q 022021 4 MASELQTSMMETMDAFELEKQR--HNNTRMEALQLLAKLETANADLARALAAAQKKL---------EMETNQVAELRQQT 72 (304)
Q Consensus 4 ~~~~l~~~~~~~~~a~~~E~~~--H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l---------~~~~~~~~~l~q~v 72 (304)
.|..+=+++++.....-.+.+. -..|..-.-.|+.+++.+..+...+|...+++- +....++..+..+.
T Consensus 145 ~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l 224 (444)
T TIGR03017 145 FAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQL 224 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHH
Confidence 3444555555544433333222 234555566777788888888888777776643 11234455555444
Q ss_pred HHHHHHHHHHh
Q 022021 73 ELKEVAHEELS 83 (304)
Q Consensus 73 ~~lE~~l~~l~ 83 (304)
...........
T Consensus 225 ~~~~~~~~~~~ 235 (444)
T TIGR03017 225 VAAQAQVMDAS 235 (444)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 199
>PRK02793 phi X174 lysis protein; Provisional
Probab=71.09 E-value=41 Score=25.63 Aligned_cols=47 Identities=19% Similarity=0.111 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 33 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAH 79 (304)
Q Consensus 33 a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l 79 (304)
+-.|+..||...+=....|..+-.-+-....+++.|+.++..|-..+
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444444444443333333333333333333333333
No 200
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=70.78 E-value=80 Score=28.35 Aligned_cols=37 Identities=24% Similarity=0.193 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 36 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQT 72 (304)
Q Consensus 36 R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v 72 (304)
|+.....+....+.-++.+|.++..-..+|.++.+++
T Consensus 3 rl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 3 RLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777778888888777777777777765
No 201
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=70.59 E-value=1.8e+02 Score=32.41 Aligned_cols=66 Identities=21% Similarity=0.131 Sum_probs=31.9
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 18 AFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKL---EMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 18 a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l---~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
+++-|.+--.--+.++.+=...|+.+.+.+-..=..+++.. ++...+..-.+.+.+++.....++.
T Consensus 369 ~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~ 437 (980)
T KOG0980|consen 369 ALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELR 437 (980)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444455444566666665555444444433 5554444444444444444444443
No 202
>PRK00846 hypothetical protein; Provisional
Probab=70.54 E-value=38 Score=26.48 Aligned_cols=53 Identities=15% Similarity=0.089 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 022021 36 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 88 (304)
Q Consensus 36 R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~ 88 (304)
|-..++....+|+..++--+.-+++.+..+...+..+..|...+..+..++..
T Consensus 7 ~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 7 RDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555566666666666666666666666666666655554433
No 203
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=70.19 E-value=1.3e+02 Score=30.47 Aligned_cols=56 Identities=29% Similarity=0.341 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 116 YTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEA 174 (304)
Q Consensus 116 l~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEs 174 (304)
+..+.+.+..|+++++.+ |+.+|.-+++....+.++++++.++-.-|++=|..-.-
T Consensus 232 i~ei~~sl~~l~d~lk~~---~q~~~~~~enr~~e~m~l~k~~nslkp~l~~lr~~~d~ 287 (464)
T KOG4637|consen 232 IREIHDSLTRLEDDLKAL---IQALRSNSENRLCELMELDKAMNSLKPDLIQLRKIRDQ 287 (464)
T ss_pred HHHHHHHHHhHHHHHHHH---HHHHhhhhhhhhHHHHHHHHHHhhcCchHHHHHHHHHH
Confidence 334445555666666554 77777666665556788999999998888876654443
No 204
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=70.11 E-value=1e+02 Score=30.00 Aligned_cols=64 Identities=19% Similarity=0.136 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 59 EMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIE 138 (304)
Q Consensus 59 ~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~ 138 (304)
....=+|+-|+.+++.++..+..+++...+ + -.|.+++|..+..+..++..|+++++.....|+
T Consensus 108 ~~l~yqvd~Lkd~lee~eE~~~~~~re~~e-------------K---~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~ 171 (302)
T PF09738_consen 108 SALMYQVDLLKDKLEELEETLAQLQREYRE-------------K---IRELERQKRAHDSLREELDELREQLKQRDELIE 171 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555666666666666666554111 1 123667777777777777788888777766665
No 205
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=69.97 E-value=39 Score=36.17 Aligned_cols=81 Identities=20% Similarity=0.227 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhh-----hHHHhhhchhHHHHHHHHHHHHHHH
Q 022021 47 LARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL-----KRLAASKGVEFEREILEAEYTFIAD 121 (304)
Q Consensus 47 la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~-----~~i~t~~~~e~E~e~~r~El~~l~~ 121 (304)
+...+..++.++.....++..|++.++.|+..+..+.=+ +.+.+....+ +|....+ .+-+.++..|..
T Consensus 501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~-g~~~~~~trVL~lr~NP~~~~~------~~k~~~l~~L~~ 573 (722)
T PF05557_consen 501 LSEELNELQKEIEELERENERLRQELEELESELEKLTLQ-GEFNPSKTRVLHLRDNPTSKAE------QIKKSTLEALQA 573 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-T--BTTTEEEEEESS-HHHHHH------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccCCCCceeeeeCCCcHHHHH------HHHHHHHHHHHH
Confidence 345566677777777788888888888888877764322 3444444433 5542222 222445555556
Q ss_pred HHHHHHHHHHHHH
Q 022021 122 KIIQLEDKAKKLE 134 (304)
Q Consensus 122 ~~~~Le~~l~~~e 134 (304)
++..|...++.++
T Consensus 574 En~~L~~~l~~le 586 (722)
T PF05557_consen 574 ENEDLLARLRSLE 586 (722)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcc
Confidence 6666655555444
No 206
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=69.69 E-value=1.1e+02 Score=29.58 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 022021 114 AEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 191 (304)
Q Consensus 114 ~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~ 191 (304)
.|++.+..+++.|-+....++..-+++-.++..+..--.-||.+|... -.++|.|..|..-+.-.|||.+.
T Consensus 60 ~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~-------Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 60 NEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSC-------KKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555544332223333333221 22577777777777777777655
No 207
>PRK02119 hypothetical protein; Provisional
Probab=69.60 E-value=36 Score=26.09 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022021 41 ETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRN 86 (304)
Q Consensus 41 e~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~ 86 (304)
+....+|+..++-.+.-+++.+.-+...++.+..|...+..|.+++
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555555555555555555555554443
No 208
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=69.52 E-value=51 Score=25.57 Aligned_cols=82 Identities=20% Similarity=0.347 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 54 AQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKL 133 (304)
Q Consensus 54 ~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~ 133 (304)
+++.+.....++......+..|+....++...+.... .+.++..+.. +..-+..+...+..++..+..+
T Consensus 3 a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~-~~~s~~~~~~----------~~~~~~~l~~~i~~~~~~~~~~ 71 (123)
T PF02050_consen 3 AEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ-QGVSVAQLRN----------YQRYISALEQAIQQQQQELERL 71 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SGGGHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666667776766655433333 2333322211 1222333445555566666666
Q ss_pred HHHHHHHHHHhcC
Q 022021 134 EGNIEMTRKEIED 146 (304)
Q Consensus 134 e~eI~~lr~~l~~ 146 (304)
+.+++..+..+..
T Consensus 72 ~~~~~~~r~~l~~ 84 (123)
T PF02050_consen 72 EQEVEQAREELQE 84 (123)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655543
No 209
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=69.51 E-value=21 Score=25.40 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE 143 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~ 143 (304)
|++.++....++.++..|+.+...+..+|..|+.+
T Consensus 20 R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 20 RQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56667777778888888888888888888877653
No 210
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=69.47 E-value=1.7e+02 Score=31.60 Aligned_cols=48 Identities=25% Similarity=0.274 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 37 LAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 37 ~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
-+.||.+-=||..+++.+.-++-....+-.+.+.+...-|+.+.++++
T Consensus 169 rtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~ 216 (861)
T KOG1899|consen 169 RTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQ 216 (861)
T ss_pred hhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHH
Confidence 378888888888888888888777776666777777777777777763
No 211
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=69.29 E-value=26 Score=36.11 Aligned_cols=55 Identities=9% Similarity=0.177 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022021 32 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRN 86 (304)
Q Consensus 32 ~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~ 86 (304)
-....+++-+....+|++.|+.++.+++....+...++++++.++.+...|+.++
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666777777766666666666666666667777666666553
No 212
>PRK04406 hypothetical protein; Provisional
Probab=68.33 E-value=37 Score=26.19 Aligned_cols=44 Identities=11% Similarity=0.072 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 42 TANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 42 ~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
....+|+..++-.+.-+++.+.-+...++.+..|...+..|.++
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~r 54 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGK 54 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555555555555555555555444
No 213
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=68.23 E-value=57 Score=25.68 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKL 133 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~ 133 (304)
++.+.+|...+.++...++++++.+
T Consensus 48 r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 48 REELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555444
No 214
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=67.79 E-value=9.9 Score=37.28 Aligned_cols=76 Identities=16% Similarity=0.276 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Q 022021 113 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL 192 (304)
Q Consensus 113 r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~~ 192 (304)
+.+|..+.-.+..++..+..+...|..|...+.........|-..+..++- .+-.|.+..+++.+++-.+++.
T Consensus 76 ~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsT-------dvsNLksdVSt~aL~ItdLe~R 148 (326)
T PF04582_consen 76 TSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALST-------DVSNLKSDVSTQALNITDLESR 148 (326)
T ss_dssp ------------------------------------------HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhh-------hhhhhhhhhhhhcchHhhHHHH
Confidence 456666667777777777777777777777776655555666666655553 3555555556666666555554
Q ss_pred Hhh
Q 022021 193 LDE 195 (304)
Q Consensus 193 ~~~ 195 (304)
...
T Consensus 149 V~~ 151 (326)
T PF04582_consen 149 VKA 151 (326)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 215
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=67.39 E-value=1.8 Score=46.23 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 022021 66 AELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 66 ~~l~q~v~~lE~~l~~l~~ 84 (304)
..++..++.++..+..|++
T Consensus 263 ~d~~~~~e~le~ei~~L~q 281 (713)
T PF05622_consen 263 DDLKIELEELEKEIDELRQ 281 (713)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444
No 216
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=67.16 E-value=1e+02 Score=28.09 Aligned_cols=47 Identities=9% Similarity=0.126 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 39 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 39 ~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
.|+.-..++...|..+...+....+.-..+..+++..+.....+..+
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~ 74 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEK 74 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666777777777777666666666666666666666554
No 217
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=67.00 E-value=82 Score=32.52 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 57 KLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 57 ~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
.+.+...++..+..+|+.|..+.+.|+++
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444444444443
No 218
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=66.85 E-value=25 Score=25.84 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 36 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELK 75 (304)
Q Consensus 36 R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~l 75 (304)
|..+||.+...+...+.+++.+.++....++.+.+-+..+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777777777777666443
No 219
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=66.22 E-value=2e+02 Score=31.11 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=18.7
Q ss_pred HHHhhchhHHHHHHHHHHHHHHHHHHHHHhccCC
Q 022021 250 VFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQS 283 (304)
Q Consensus 250 r~lrr~p~aR~~~~~Y~v~LHl~V~~~L~~~s~~ 283 (304)
+|-.-.|+.+.++=.|-|| +|.|+..
T Consensus 377 VF~e~~~lv~S~lDGYnVC--------IFAYGQT 402 (670)
T KOG0239|consen 377 VFEEVSPLVQSALDGYNVC--------IFAYGQT 402 (670)
T ss_pred HHHHHHHHHHHHhcCccee--------EEEeccc
Confidence 4555588888888888888 6666655
No 220
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=66.17 E-value=79 Score=28.86 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=55.5
Q ss_pred hhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChh-------HHHHHHHHHHHHHHHHH
Q 022021 96 LKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED-PTEV-------EIELKRRLGQLTDHLIQ 167 (304)
Q Consensus 96 ~~~i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~-~s~~-------~~elEkRl~~LTe~Li~ 167 (304)
..+-.+..+.+.|.++|++.-..|+++ ...++.++-++++.+....+. |+.+ .+.+=.|+
T Consensus 12 ~D~Y~~~~~~~~Eh~~f~~Ak~rLe~~---hr~r~~~VmkeW~eaE~~~~~l~~~DPk~Ae~~k~~m~~rF--------- 79 (193)
T PF12925_consen 12 VDPYFEHPDPENEHQRFKEAKERLEEK---HRERMTKVMKEWSEAEERYKELPKADPKKAEQFKKEMTQRF--------- 79 (193)
T ss_dssp HHHHHHSSTTSTHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHH---------
T ss_pred CChHhhcCCCCchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHH---------
Confidence 344556667778899998666666654 455677778888888888876 4322 34444455
Q ss_pred HHHHHHHhhhhhHHHHHHHHHH
Q 022021 168 KQAQVEALSSEKATLAFRIEAV 189 (304)
Q Consensus 168 KQtqlEsl~sEk~al~~qLErl 189 (304)
|+.+.+|..|.++-+-||+..
T Consensus 80 -Q~~v~aLE~e~~~er~qL~~~ 100 (193)
T PF12925_consen 80 -QKTVQALEQEAAAERQQLVET 100 (193)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHH
Confidence 677888888877777777765
No 221
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=65.98 E-value=2.1e+02 Score=31.38 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 108 EREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRK 142 (304)
Q Consensus 108 E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~ 142 (304)
|.+-+++-|..+.-.-..|.....++.+++.+|++
T Consensus 224 e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 224 ELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444444443333333344444455555566654
No 222
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=65.87 E-value=44 Score=26.15 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 122 KIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 122 ~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
.-.+++.++..+-+||+.+|+.+.
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~~v~ 49 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQKVY 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666666553
No 223
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=65.84 E-value=1.6e+02 Score=29.83 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=12.0
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHH
Q 022021 245 FLAGVVFLRRNPIAKLWSLVYLVC 268 (304)
Q Consensus 245 ~l~~~r~lrr~p~aR~~~~~Y~v~ 268 (304)
...+..-|.++| .|+++.+.+++
T Consensus 361 ~~~~~~Pl~~tR-~r~~~t~~~v~ 383 (395)
T PF10267_consen 361 VANCPLPLTRTR-LRTLTTLLLVG 383 (395)
T ss_pred HhcCCcHHhhcc-HHHHHHHHHHH
Confidence 334444445455 56666665555
No 224
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=65.70 E-value=1.1e+02 Score=27.99 Aligned_cols=57 Identities=18% Similarity=0.316 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 28 NTRMEALQLLAKLETANADLA----RALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 28 ~Tr~~a~~R~~~Le~~n~~la----~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
-.+++...|+-..|.++-.+- +-+...-+.++.-..++..|++-+.+|..+-.+|+.
T Consensus 16 ~skeel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 16 WSKEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999855443 344555677888888999999999999999988875
No 225
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=65.43 E-value=2e+02 Score=30.93 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 60 METNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 60 ~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
-...++..++++++..|..+.+++.+
T Consensus 271 fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 271 FLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555544
No 226
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=65.23 E-value=60 Score=24.87 Aligned_cols=48 Identities=25% Similarity=0.268 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 36 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 36 R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
-+.+|+...+.+-..|+.++.++++.+.+...+.+.++.|......|+
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666665555555555555544
No 227
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=64.78 E-value=2e+02 Score=30.63 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCChhHHHHHH--HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 022021 115 EYTFIADKIIQLEDKAKKLEGNIEM-TRKEIEDPTEVEIELKR--RLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 191 (304)
Q Consensus 115 El~~l~~~~~~Le~~l~~~e~eI~~-lr~~l~~~s~~~~elEk--Rl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~ 191 (304)
+-..++.++..+..++.+.+.-... +-++.+.-.....-|.. -||..-+.||.+=...-.+..|..-|+-|++..+.
T Consensus 513 DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~~e~~ 592 (594)
T PF05667_consen 513 DTRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLLASLHENCSQLIETVEETGTISREIRDLEEQIDTESQ 592 (594)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 3334445555566666555533332 22233321113566666 88999999999999999999999999988887654
No 228
>PRK00736 hypothetical protein; Provisional
Probab=64.23 E-value=44 Score=25.18 Aligned_cols=31 Identities=26% Similarity=0.271 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 52 AAAQKKLEMETNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 52 a~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l 82 (304)
+-.+.-+++.+..+......+..|...+..|
T Consensus 15 afqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 15 AEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444433334433333333
No 229
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=64.17 E-value=93 Score=26.79 Aligned_cols=65 Identities=15% Similarity=0.223 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 022021 116 YTFIADKIIQLEDKAKKLEGNIEMTRKEIED-------PTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKA 180 (304)
Q Consensus 116 l~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~-------~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~ 180 (304)
++.+...+...+..++.+..+|.++..++.. ....+..|...+......|-+.|.+++.|..|+.
T Consensus 21 ~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe 92 (135)
T TIGR03495 21 LRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENE 92 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 3334444444444455555555555555533 1223444555555555666666666666666643
No 230
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=64.08 E-value=18 Score=35.03 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 107 FEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 107 ~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
+|.+-+-.|+.-++.+|.+|.+++..++.||+-||+-|
T Consensus 248 ae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 248 AEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666777777888888888888888888887655
No 231
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=63.91 E-value=36 Score=35.12 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022021 155 KRRLGQLTDHLIQKQAQV 172 (304)
Q Consensus 155 EkRl~~LTe~Li~KQtql 172 (304)
|.+|..|-+.+-.-+.|+
T Consensus 103 e~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 103 QRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 232
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=63.62 E-value=22 Score=31.52 Aligned_cols=87 Identities=20% Similarity=0.218 Sum_probs=51.7
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC-hhHHHHHHHHHHHHHHHH-HHHHHHHHhhhhh
Q 022021 103 KGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED-PT-EVEIELKRRLGQLTDHLI-QKQAQVEALSSEK 179 (304)
Q Consensus 103 ~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~-~s-~~~~elEkRl~~LTe~Li-~KQtqlEsl~sEk 179 (304)
...|.|++.+|.||...+++|..|..-+...+.....||+.+-- |- .-...+-+=++.+.+.=. .+|..-+.+.+=.
T Consensus 25 ~LsEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlskg~~~vq~S~aY~gqKTsaa~s~~g 104 (162)
T PF04201_consen 25 GLSEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSKGWHDVQDSNAYKGQKTSAAFSSVG 104 (162)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHHhHhhhchhHHHHHHHHHHHHHHH
Confidence 35577888899999999999888888887777777778877753 21 111222222223322211 1455555555544
Q ss_pred HHHHHHHHHH
Q 022021 180 ATLAFRIEAV 189 (304)
Q Consensus 180 ~al~~qLErl 189 (304)
.+....|..+
T Consensus 105 ~~i~~Kl~dm 114 (162)
T PF04201_consen 105 SAISRKLGDM 114 (162)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 233
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=63.55 E-value=88 Score=26.19 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=13.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHH
Q 022021 166 IQKQAQVEALSSEKATLAFRIEAV 189 (304)
Q Consensus 166 i~KQtqlEsl~sEk~al~~qLErl 189 (304)
-.-+..++.|...+.-|.-|||.+
T Consensus 108 ~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 108 SELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444566666666666666653
No 234
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=63.41 E-value=58 Score=24.06 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 022021 121 DKIIQLEDKAKKLEGNIEMTRKEIEDP 147 (304)
Q Consensus 121 ~~~~~Le~~l~~~e~eI~~lr~~l~~~ 147 (304)
.++.+|+.++.+++.+|+.+..-+++|
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n~ 30 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSNE 30 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 455668888888899999999999874
No 235
>PRK00295 hypothetical protein; Provisional
Probab=63.36 E-value=43 Score=25.26 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 45 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 45 ~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
.+|+..++-.+.-+++.+.-+...+..+..|+..+..|.+
T Consensus 8 ~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 8 TELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444433
No 236
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=62.85 E-value=1.6e+02 Score=29.01 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhccCC
Q 022021 240 QLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQS 283 (304)
Q Consensus 240 ~lD~~~l~~~r~lrr~p~aR~~~~~Y~v~LHl~V~~~L~~~s~~ 283 (304)
-.+++=++++..+.--|.+=.+++=|-+.-.++-|.++|+|.+.
T Consensus 122 EYEkFKl~~tii~l~~~~~~~~~~~~r~~d~~~~f~lvwyY~tL 165 (330)
T PF07851_consen 122 EYEKFKLYLTIILLLFAVALLFLLNYRVLDQLFNFLLVWYYCTL 165 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 45666666666666677766677777777777777777777654
No 237
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=62.72 E-value=1.7e+02 Score=29.18 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 48 ARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 48 a~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
..-|...-..+++.+.+.++|+..+.+|.+.+-..+.
T Consensus 84 ~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~ 120 (401)
T PF06785_consen 84 DEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVRE 120 (401)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456667778899999999999999999999988875
No 238
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=62.63 E-value=1e+02 Score=26.57 Aligned_cols=30 Identities=17% Similarity=0.056 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 54 AQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 54 ~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
++..++..+..+...+..+..+.+.+..++
T Consensus 24 l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~ 53 (135)
T TIGR03495 24 ARADLERANRVLKAQQAELASKANQLIVLL 53 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 334444444444444444444555554443
No 239
>PRK12704 phosphodiesterase; Provisional
Probab=62.54 E-value=2e+02 Score=29.94 Aligned_cols=11 Identities=18% Similarity=0.129 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 022021 259 KLWSLVYLVCL 269 (304)
Q Consensus 259 R~~~~~Y~v~L 269 (304)
|+..+++.++-
T Consensus 342 ~Va~lA~~lA~ 352 (520)
T PRK12704 342 EVAHLAGLMAA 352 (520)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 240
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.35 E-value=2.6e+02 Score=31.13 Aligned_cols=39 Identities=15% Similarity=0.067 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 107 FEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 107 ~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
-|...++-|+..+..+...+.+++.+-.+.|+..+....
T Consensus 737 eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~ 775 (970)
T KOG0946|consen 737 EELNAALSENKKLENDQELLTKELNKKNADIESFKATQR 775 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 345556677777777777888888777777877776654
No 241
>PRK04325 hypothetical protein; Provisional
Probab=61.93 E-value=55 Score=25.08 Aligned_cols=40 Identities=23% Similarity=0.188 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 45 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 45 ~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
.+|+..++=.+.-+++.+.-+...+..+..|+..+..|..
T Consensus 12 ~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 12 TELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444443
No 242
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=61.64 E-value=1.9e+02 Score=29.52 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCcch--hhhHHHhhhchhHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 022021 63 NQVAELRQQTELKEVAHEELSQRNSNTHQTGI--YLKRLAASKGVEFEREILEAEYTFIAD-------KIIQLEDKAKKL 133 (304)
Q Consensus 63 ~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~--~~~~i~t~~~~e~E~e~~r~El~~l~~-------~~~~Le~~l~~~ 133 (304)
.+++..++.+......+..+|.+-+-..|..+ ...++|+. .+.+.-..+.++..+.. ++..|+.++..+
T Consensus 249 ~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~--Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aL 326 (434)
T PRK15178 249 NDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAG--FETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVL 326 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Confidence 33444444444444555555554333344332 23333332 23334444555554433 356788888888
Q ss_pred HHHHHHHHHHhcC
Q 022021 134 EGNIEMTRKEIED 146 (304)
Q Consensus 134 e~eI~~lr~~l~~ 146 (304)
+++|+..|..+..
T Consensus 327 e~QIa~er~kl~~ 339 (434)
T PRK15178 327 EKQIGEQRNRLSN 339 (434)
T ss_pred HHHHHHHHHHhhc
Confidence 8888888888864
No 243
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=60.55 E-value=57 Score=24.10 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 022021 62 TNQVAELRQQTELKEVAHEELSQRNSNTH 90 (304)
Q Consensus 62 ~~~~~~l~q~v~~lE~~l~~l~~~~~~~~ 90 (304)
..++..|..+.+.++.++..+..++++.+
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~ 31 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNEN 31 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 35666677777777777887777766654
No 244
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=60.41 E-value=1.4e+02 Score=27.53 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCChhHHHHHH--HHHHHHHHHHHHHHHHHHhhhhh
Q 022021 134 EGNIEMTRKEIEDPTEVEIELKR--RLGQLTDHLIQKQAQVEALSSEK 179 (304)
Q Consensus 134 e~eI~~lr~~l~~~s~~~~elEk--Rl~~LTe~Li~KQtqlEsl~sEk 179 (304)
.+.|+.|+..+..+.. ..-|| |+ +|.|.-|.
T Consensus 130 ~~Rl~~L~~~l~~~dv--~~~ek~r~v-------------lea~~~E~ 162 (251)
T PF11932_consen 130 QERLARLRAMLDDADV--SLAEKFRRV-------------LEAYQIEM 162 (251)
T ss_pred HHHHHHHHHhhhccCC--CHHHHHHHH-------------HHHHHHHH
Confidence 3455667777766443 22344 66 77777664
No 245
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=60.38 E-value=3e+02 Score=31.29 Aligned_cols=54 Identities=11% Similarity=0.152 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 022021 35 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 88 (304)
Q Consensus 35 ~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~ 88 (304)
.+-..+..+..++.+.|..+....+...++-...-++-..|+.+..+|++++..
T Consensus 265 d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~ 318 (1200)
T KOG0964|consen 265 DESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITG 318 (1200)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhh
Confidence 333444555555555555555555555555555555566778888888876533
No 246
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=60.35 E-value=2.3e+02 Score=30.00 Aligned_cols=38 Identities=24% Similarity=0.018 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHHH-----hhchhHHHHHHHHHHHHHHHHHH
Q 022021 238 LKQLDSIFLAGVVFL-----RRNPIAKLWSLVYLVCLHLWVIY 275 (304)
Q Consensus 238 l~~lD~~~l~~~r~l-----rr~p~aR~~~~~Y~v~LHl~V~~ 275 (304)
...++++-+.+-+.+ -|+.++-.+|.+|=..+|+-+-+
T Consensus 516 ~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~~k~~i 558 (581)
T KOG0995|consen 516 EELVKSIELELDRMVATGEEERQKIAKQLFAVIDQISDFKVSI 558 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455544444443 24566666777777777765544
No 247
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=59.56 E-value=2e+02 Score=31.09 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 022021 157 RLGQLTDHLIQKQ 169 (304)
Q Consensus 157 Rl~~LTe~Li~KQ 169 (304)
++..+-..|..|.
T Consensus 284 ~L~~~~~~l~~~~ 296 (670)
T KOG0239|consen 284 DLESLEENLVEKK 296 (670)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444555554
No 248
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=59.50 E-value=3 Score=45.64 Aligned_cols=50 Identities=32% Similarity=0.494 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 125 QLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEA 174 (304)
Q Consensus 125 ~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEs 174 (304)
.|+.+++.++.++..|+.++.....+...|++.|..+...|-.=++.++.
T Consensus 261 ~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~ 310 (859)
T PF01576_consen 261 ALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEE 310 (859)
T ss_dssp --------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46666677777777777777655545666777666666555544444444
No 249
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=59.42 E-value=1.5e+02 Score=27.36 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 106 EFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 106 e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
..|.+.+..|+.....+..-|.+++.+++.+|..||..+..
T Consensus 65 ~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 65 QLELEVCENELQRKKNEAELLREKLGQLEAELAELREELAC 105 (202)
T ss_pred hHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHh
Confidence 34556666677666666677777777778888888877754
No 250
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=59.15 E-value=1.6e+02 Score=27.81 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 118 FIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 118 ~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
.++-++..|+++.+++..++.+|+...
T Consensus 174 ~le~E~s~LeE~~~~l~~ev~~L~~r~ 200 (290)
T COG4026 174 RLEVENSRLEEMLKKLPGEVYDLKKRW 200 (290)
T ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 444444445555555554555444443
No 251
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=58.68 E-value=74 Score=33.59 Aligned_cols=73 Identities=12% Similarity=0.146 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 022021 116 YTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELK-RRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 189 (304)
Q Consensus 116 l~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elE-kRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl 189 (304)
+..++.++..+|.++.+++++|..+..++..|..- ...+ +++..|.+.+-..+.+++.+..+=-.|.-.||-+
T Consensus 558 ~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 558 TQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELY-DQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777888888888777777665321 1122 2677777777777777777776655555555544
No 252
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=58.30 E-value=91 Score=25.91 Aligned_cols=53 Identities=26% Similarity=0.273 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 30 RMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 30 r~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l 82 (304)
|.+.+.++..|+.....+.+.++.++..+.+...+-..|+-.|..|-..+..+
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888888777777777777776666666666666666666555554
No 253
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=58.14 E-value=3.3e+02 Score=31.09 Aligned_cols=42 Identities=10% Similarity=0.096 Sum_probs=28.2
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 25 RHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVA 66 (304)
Q Consensus 25 ~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~ 66 (304)
.|..+++.++-.+=.++..+..+...|+.....+...+.+.+
T Consensus 210 ~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d 251 (1141)
T KOG0018|consen 210 KGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERMD 251 (1141)
T ss_pred HHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhh
Confidence 466777888888877777777777776666655554444433
No 254
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=57.73 E-value=99 Score=25.45 Aligned_cols=54 Identities=28% Similarity=0.288 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 30 RMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 30 r~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
|.+.+.++..++.....+...+..++..+.+...+-..|+-.|..|-..+..+.
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446677888888777777777777776666666666666666665555555543
No 255
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.65 E-value=1.8e+02 Score=27.86 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 32 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 32 ~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
+...=+..++.+...|.+.+..++.++++.+.++++++++.+.++.++..++.
T Consensus 42 ~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 42 ELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666666666666666666666666666555553
No 256
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=57.62 E-value=1.6e+02 Score=27.31 Aligned_cols=44 Identities=27% Similarity=0.336 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 40 LETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 40 Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
|+....|....|..+.+.+.........+..++..+......+.
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e 72 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLE 72 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444
No 257
>PRK11519 tyrosine kinase; Provisional
Probab=57.59 E-value=2.7e+02 Score=29.89 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 60 METNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 60 ~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
=...++..++++++..|..+.+++++
T Consensus 271 fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 271 FLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555544
No 258
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.23 E-value=3.1e+02 Score=30.49 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 113 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 113 r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
..|+..|..++++|..++.+.+-.|..-|.+|
T Consensus 443 ~~eletLn~k~qqls~kl~Dvr~~~tt~kt~i 474 (1118)
T KOG1029|consen 443 QQELETLNFKLQQLSGKLQDVRVDITTQKTEI 474 (1118)
T ss_pred HHHHHHHHHHHHHHhhhhhhheeccchHHHHH
Confidence 45555555666666666555554444444444
No 259
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=57.22 E-value=2.6e+02 Score=30.07 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 36 LLAKLETANADLARALAAAQKKLEMETNQV 65 (304)
Q Consensus 36 R~~~Le~~n~~la~ala~~q~~l~~~~~~~ 65 (304)
+..+|+.++.+|...+..++..+.....++
T Consensus 504 ~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l 533 (722)
T PF05557_consen 504 ELNELQKEIEELERENERLRQELEELESEL 533 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544444443
No 260
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=56.95 E-value=3.3e+02 Score=30.71 Aligned_cols=70 Identities=11% Similarity=0.084 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-----CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022021 107 FEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE-D-----PTEVEIELKRRLGQLTDHLIQKQAQVEALSSEK 179 (304)
Q Consensus 107 ~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~-~-----~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk 179 (304)
.+.+.+++++....+....++..+...+..+.. .+. . +.++...++..+..+...+-..+.++..+....
T Consensus 777 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 852 (1047)
T PRK10246 777 ETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQ---HQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQGEIRQQL 852 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555454444433322221 111 1 123345555666666665555555555444433
No 261
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=56.46 E-value=51 Score=26.84 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CC
Q 022021 124 IQLEDKAKKLEGNIEMTRKEIED-PT 148 (304)
Q Consensus 124 ~~Le~~l~~~e~eI~~lr~~l~~-~s 148 (304)
..+++++.+.+..++.+...+.+ |+
T Consensus 38 ~~l~~~~~~~~~Rl~~lE~~l~~LPt 63 (106)
T PF10805_consen 38 EKLEERLDEHDRRLQALETKLEHLPT 63 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33444444444444444455555 54
No 262
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=55.93 E-value=1.7e+02 Score=27.87 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 53 AAQKKLEMETNQVAELRQQTELKEVA 78 (304)
Q Consensus 53 ~~q~~l~~~~~~~~~l~q~v~~lE~~ 78 (304)
.+.++|.....+++.+..++.+++..
T Consensus 161 ~l~~eLqkr~~~v~~l~~q~~k~~~~ 186 (289)
T COG4985 161 PLERELQKRLLEVETLRDQVDKMVEQ 186 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777776666543
No 263
>PF13514 AAA_27: AAA domain
Probab=55.89 E-value=3.5e+02 Score=30.63 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 114 AEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 114 ~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
.++..+..++..++..+...+.++..+-..+..
T Consensus 743 ~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~ 775 (1111)
T PF13514_consen 743 AEIRELRRRIEQMEADLAAFEEQVAALAERLGP 775 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 344444455555555555555555555555543
No 264
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=55.88 E-value=2.2e+02 Score=28.28 Aligned_cols=61 Identities=10% Similarity=0.120 Sum_probs=33.6
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 20 ELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHE 80 (304)
Q Consensus 20 ~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~ 80 (304)
..-...+..|=.++-.|..+.+..-.+|...+..+..++.+....+..|+.-+..++..+.
T Consensus 236 ~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lk 296 (384)
T PF03148_consen 236 NDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLK 296 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3334444555555666666666555555555555555555555555555555555555443
No 265
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=55.82 E-value=2.2e+02 Score=30.78 Aligned_cols=99 Identities=21% Similarity=0.181 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhh-hHHHh-------hhch
Q 022021 34 LQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL-KRLAA-------SKGV 105 (304)
Q Consensus 34 ~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~-~~i~t-------~~~~ 105 (304)
++|++.|+--..-| +-.....+.+|....+++.-||.-++.-+.++.... ..+ .+++. +-+.
T Consensus 110 QerLaRLe~dkesL-------~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatE---EmLQqellsrtsLETqKlDL 179 (861)
T KOG1899|consen 110 QERLARLEMDKESL-------QLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATE---EMLQQELLSRTSLETQKLDL 179 (861)
T ss_pred HHHHHHHhcchhhh-------eehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHH---HHHHHHHHhhhhHHHHHhHH
Confidence 35555554444333 333444556666666666666665554433221111 111 00111 1122
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 106 EFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRK 142 (304)
Q Consensus 106 e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~ 142 (304)
=+|..-+|--|..++.+-.+.|+|+++.+..|+.+++
T Consensus 180 maevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~ 216 (861)
T KOG1899|consen 180 MAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQ 216 (861)
T ss_pred HHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHH
Confidence 2444445555555666666777788887777777663
No 266
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=55.71 E-value=84 Score=23.44 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=14.2
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 022021 18 AFELEKQRHNNTRMEALQLLAKLETANADLARAL 51 (304)
Q Consensus 18 a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~al 51 (304)
|++.|..++.. ....+.+....|-.+...|
T Consensus 5 aL~~EirakQ~----~~eEL~kvk~~n~~~e~kL 34 (61)
T PF08826_consen 5 ALEAEIRAKQA----IQEELTKVKSANLAFESKL 34 (61)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 55556655543 3344444554444443333
No 267
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=55.33 E-value=96 Score=23.97 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKL 133 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~ 133 (304)
...+|+++..+.+++..+++++.++
T Consensus 66 L~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 66 LVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666666666666666665554
No 268
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=54.94 E-value=1.7e+02 Score=29.88 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022021 37 LAKLETANADLARALAAAQK 56 (304)
Q Consensus 37 ~~~Le~~n~~la~ala~~q~ 56 (304)
..+......++..+|+.|..
T Consensus 8 ~s~~dqr~~~~~~~laq~~k 27 (459)
T KOG0288|consen 8 KSENDQRLIDLNTELAQCEK 27 (459)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 33333333444444444333
No 269
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=54.56 E-value=96 Score=23.75 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 40 LETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 40 Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l 82 (304)
....+.+...+++.++..++....+.+.|+.+|..|-..+..|
T Consensus 19 y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~L 61 (70)
T PF04899_consen 19 YEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRL 61 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555444444444444444444444
No 270
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=54.01 E-value=1.5e+02 Score=25.83 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcC-CChhH-HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022021 109 REILEAEYTFIADKIIQLEDKAKK-------LEGNIEMTRKEIED-PTEVE-IELKRRLGQLTDHLIQKQAQVEALSSEK 179 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~-------~e~eI~~lr~~l~~-~s~~~-~elEkRl~~LTe~Li~KQtqlEsl~sEk 179 (304)
...++.++...++.+..+.+++.. ....+..++.+... ..|.. .+|++.. ..++.+..+.
T Consensus 93 ~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~-----------~~~~~l~~~i 161 (177)
T PF13870_consen 93 LERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTK-----------EEVEELRKEI 161 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH-----------HHHHHHHHHH
Confidence 445555555555555555555544 44445555555444 23433 3677654 2344444445
Q ss_pred HHHHHHHHHHHh
Q 022021 180 ATLAFRIEAVSR 191 (304)
Q Consensus 180 ~al~~qLErl~~ 191 (304)
..|+-+++.++.
T Consensus 162 ~~l~rk~~~l~~ 173 (177)
T PF13870_consen 162 KELERKVEILEM 173 (177)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 271
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=53.03 E-value=1.3e+02 Score=30.34 Aligned_cols=78 Identities=18% Similarity=0.259 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 022021 111 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 189 (304)
Q Consensus 111 ~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl 189 (304)
-++.++..+.+++..+++++.++...|..++..-..+. ...+...++..+.+.+.....+++.+..+...+.-++++.
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~-~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGK-LPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555566666777777777777776666664332211 1134444666666666666666666666666655555554
No 272
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=52.98 E-value=2.4e+02 Score=27.78 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 49 RALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 49 ~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
.-|.......-....++..|++++..+..|+.-|+.
T Consensus 72 ~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~ 107 (319)
T PF09789_consen 72 QLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLRE 107 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 333444444444455556666666666666555554
No 273
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=52.85 E-value=1e+02 Score=27.19 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 113 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 113 r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
+++.....+++..|++++.+.+.+++.|+.|.++
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455577777888888888888888877765
No 274
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=52.70 E-value=1.9e+02 Score=26.51 Aligned_cols=83 Identities=20% Similarity=0.261 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHH
Q 022021 31 MEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFERE 110 (304)
Q Consensus 31 ~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e 110 (304)
-+.-.|-++|+.+++-+.+.|+.-+..+...+..+.-.+++-..--......+.. .+..+.|+.
T Consensus 101 A~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~e----------------a~aL~~e~~ 164 (192)
T PF11180_consen 101 ADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQE----------------AQALEAERR 164 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHH
Confidence 3456688899999999999999999999999888888777755555555555444 334445565
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022021 111 ILEAEYTFIADKIIQLEDK 129 (304)
Q Consensus 111 ~~r~El~~l~~~~~~Le~~ 129 (304)
..+..|..+...+..|+.+
T Consensus 165 aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 165 AAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5565566666666666554
No 275
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=52.58 E-value=1e+02 Score=23.39 Aligned_cols=51 Identities=18% Similarity=0.140 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 32 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 32 ~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l 82 (304)
+.+.|-..|+.+|..|-..++.++.+-.....+.+..+++|+.|=..+.++
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456777888888888888888888888888888888888888776665554
No 276
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=52.47 E-value=1.2e+02 Score=24.25 Aligned_cols=35 Identities=26% Similarity=0.200 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 48 ARALAAAQKKLEMETNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 48 a~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l 82 (304)
...+..++..++....+...+.......+.....+
T Consensus 5 ~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL 39 (105)
T cd00632 5 LAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEEL 39 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444
No 277
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=52.38 E-value=1.9e+02 Score=26.51 Aligned_cols=146 Identities=18% Similarity=0.191 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhhhcccCCCcchhh----
Q 022021 33 ALQLLAKLETANADLARALAAAQKKLEMETNQ------------VAELRQQTELKEVAHEELSQRNSNTHQTGIYL---- 96 (304)
Q Consensus 33 a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~------------~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~---- 96 (304)
+-.+...|+....++-..+..++++|+..+.. +.+|.+.+......+..++..+.........+
T Consensus 36 ~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p 115 (240)
T PF12795_consen 36 QKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRP 115 (240)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 44566667777777777777777777666554 46666666666666666665444443211111
Q ss_pred ----hHHHhhhchhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 022021 97 ----KRLAASKGVEFEREILEAEYTF---------IADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTD 163 (304)
Q Consensus 97 ----~~i~t~~~~e~E~e~~r~El~~---------l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe 163 (304)
..+...... .+-.+..+.. -..+...|+.++..+..+|..++.++.+.+.-...+..|+..++-
T Consensus 116 ~~aq~~l~~~~~~---l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~ 192 (240)
T PF12795_consen 116 ERAQQQLSEARQR---LQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKA 192 (240)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHH
Confidence 011111100 0111111111 123344577777777788888888877643334555557755555
Q ss_pred HHHHHHHHHHHhhhhhHH
Q 022021 164 HLIQKQAQVEALSSEKAT 181 (304)
Q Consensus 164 ~Li~KQtqlEsl~sEk~a 181 (304)
.+=.-+..+..|..-.+.
T Consensus 193 ~~~~l~~~l~~Lq~~ln~ 210 (240)
T PF12795_consen 193 RIQRLQQQLQALQNLLNQ 210 (240)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555444
No 278
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.06 E-value=2.2e+02 Score=27.24 Aligned_cols=69 Identities=7% Similarity=0.146 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 16 MDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 16 ~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
+++-+-++..-..-...+..=+..|.....++.+.+...+.+++..+.++..++.+++.+++++.+-+.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~ 101 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQE 101 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777667777888888899999999999999999999999999999999999999988866553
No 279
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=51.81 E-value=2e+02 Score=30.18 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 150 VEIELKRRLGQLTDHLIQKQAQVEALSS 177 (304)
Q Consensus 150 ~~~elEkRl~~LTe~Li~KQtqlEsl~s 177 (304)
.+.++|-+|..+...|-.-|..|..+.+
T Consensus 276 E~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 276 ELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3566777777777777777766665543
No 280
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=51.79 E-value=1e+02 Score=23.34 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIE 138 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~ 138 (304)
||.+-.-+.....++..|..++..+.++++
T Consensus 35 Rd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 35 RDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443333444444444444444444433
No 281
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=51.53 E-value=12 Score=29.86 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 022021 260 LWSLVYLVCLHLWVIY 275 (304)
Q Consensus 260 ~~~~~Y~v~LHl~V~~ 275 (304)
+.||+.+++||+|-=|
T Consensus 68 vgFIasV~~LHi~gK~ 83 (88)
T KOG3457|consen 68 VGFIASVFALHIWGKL 83 (88)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5789999999999643
No 282
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=51.26 E-value=1.2e+02 Score=29.61 Aligned_cols=7 Identities=29% Similarity=0.254 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 022021 151 EIELKRR 157 (304)
Q Consensus 151 ~~elEkR 157 (304)
...|+.+
T Consensus 300 ~~~l~~~ 306 (344)
T PF12777_consen 300 IEELEEQ 306 (344)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 283
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=51.17 E-value=1e+02 Score=23.02 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 14 ETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETN 63 (304)
Q Consensus 14 ~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~ 63 (304)
-+-+++..|+..=+.+=-.+..|+-+-+..|.+|...|.+++..+++...
T Consensus 11 rakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 11 RAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45678888888888888888888888899999988888888888877543
No 284
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=51.05 E-value=1.5e+02 Score=25.20 Aligned_cols=52 Identities=19% Similarity=0.157 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 33 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 33 a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
...|+.+++..|.+|...+-.+-.+++....+=-.+...-+.|...++.+..
T Consensus 70 ~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~ 121 (141)
T PF13874_consen 70 TSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEA 121 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555544333322333333333344444433
No 285
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.23 E-value=1.2e+02 Score=23.55 Aligned_cols=19 Identities=11% Similarity=0.207 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022021 62 TNQVAELRQQTELKEVAHE 80 (304)
Q Consensus 62 ~~~~~~l~q~v~~lE~~l~ 80 (304)
+.++++|++++..|.....
T Consensus 24 QmEieELKEknn~l~~e~q 42 (79)
T COG3074 24 QMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHhhHhHHHHH
Confidence 3344444444444433333
No 286
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.18 E-value=1.2e+02 Score=23.53 Aligned_cols=54 Identities=19% Similarity=0.154 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 30 RMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 30 r~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
.+++-+|+.+||...+-=...|..+---+.+...-++.++.++..|-+.+.+++
T Consensus 3 ~~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 3 DMELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355667777777766655555555555555555555555555555555444443
No 287
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=49.93 E-value=1.6e+02 Score=24.84 Aligned_cols=98 Identities=19% Similarity=0.257 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcc---hhhhHHHhhhchhHHHHHHHHHHHHH
Q 022021 43 ANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTG---IYLKRLAASKGVEFEREILEAEYTFI 119 (304)
Q Consensus 43 ~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~---~~~~~i~t~~~~e~E~e~~r~El~~l 119 (304)
.-.+.++.+.++|..++.-..-...+..++..=+.-+++|.. ..+.. .-+.|++-++..+.-+.--+.-+.++
T Consensus 6 kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldl----le~d~~VYKliGpvLvkqel~EAr~nV~kRlefI 81 (120)
T KOG3478|consen 6 KMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDL----LEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFI 81 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----hcccchHHHHhcchhhHHHHHHHHhhHHHHHHHH
Confidence 344566666777776666555444444444333333444321 11111 01244433332222222223344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 120 ADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 120 ~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
..++.++++.++..+.+..+.|..+
T Consensus 82 ~~Eikr~e~~i~d~q~e~~k~R~~v 106 (120)
T KOG3478|consen 82 SKEIKRLENQIRDSQEEFEKQREAV 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666665555555444
No 288
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=49.93 E-value=28 Score=24.92 Aligned_cols=30 Identities=27% Similarity=0.670 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHH--HHHhccCCCccccc
Q 022021 260 LWSLVYLVCLHLWVIY--ILLSHSQSSAEARS 289 (304)
Q Consensus 260 ~~~~~Y~v~LHl~V~~--~L~~~s~~~~~~~~ 289 (304)
++++++++..-+|.++ |||..++.++++|.
T Consensus 17 IC~Fl~~~~~F~~F~~Kqilfr~~~~snear~ 48 (54)
T PF06716_consen 17 ICLFLFCLVVFIWFVYKQILFRNNPQSNEARF 48 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCcchhhc
Confidence 4555566666666665 56666776666654
No 289
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=49.24 E-value=1.2e+02 Score=23.25 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 32 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 32 ~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l 82 (304)
.+..+....+...+++..-++..++......+++..|..+|..|...++.|
T Consensus 18 ~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 18 SYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355677888888899999999999999999999999999999988888766
No 290
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=48.80 E-value=92 Score=25.66 Aligned_cols=39 Identities=23% Similarity=0.450 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 022021 153 ELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 191 (304)
Q Consensus 153 elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~ 191 (304)
+-..+...|.+.|-.|-+.|-.+..|.-+|.|+-.+|..
T Consensus 23 eEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~k 61 (102)
T PF10205_consen 23 EEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTK 61 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456667777777777777777777777777666543
No 291
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=48.62 E-value=1.9e+02 Score=27.37 Aligned_cols=109 Identities=22% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchh-hhHHHhhhchhHHH
Q 022021 31 MEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIY-LKRLAASKGVEFER 109 (304)
Q Consensus 31 ~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~-~~~i~t~~~~e~E~ 109 (304)
.+++..-..++...-.+..+|..-++.+.....+.+.++.....++.......+.+.+....-.. +.++ ....+.|+
T Consensus 179 ~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L--~ekme~e~ 256 (297)
T PF02841_consen 179 QEFLQSKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQL--KEKMEEER 256 (297)
T ss_dssp HHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 022021 110 EILEAEYTFIADKII---------QLEDKAKKLEGNIEMTR 141 (304)
Q Consensus 110 e~~r~El~~l~~~~~---------~Le~~l~~~e~eI~~lr 141 (304)
..+..|+..+-+.-. .++.++..++.+|..|+
T Consensus 257 ~~~~~e~e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 257 EQLLQEQERLLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 292
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=48.41 E-value=2.8e+02 Score=27.35 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHH
Q 022021 166 IQKQAQVEALSSEKATLAFRIEA 188 (304)
Q Consensus 166 i~KQtqlEsl~sEk~al~~qLEr 188 (304)
-.++.++..|..+....+-.++.
T Consensus 338 ~~~~~~~~~L~r~~~~~~~~y~~ 360 (444)
T TIGR03017 338 NRQRDEMSVLQRDVENAQRAYDA 360 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444444
No 293
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=48.33 E-value=4.3e+02 Score=29.50 Aligned_cols=47 Identities=26% Similarity=0.335 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCh--------hHHHHHHHHH
Q 022021 113 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED-PTE--------VEIELKRRLG 159 (304)
Q Consensus 113 r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~-~s~--------~~~elEkRl~ 159 (304)
.+-+.+.+.+...|..+++|.+.+-..+|..+-+ +.. -.+..|+|||
T Consensus 1079 EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~VV~AK~~WC~VmRl~r~n~vErRL~ 1134 (1480)
T COG3096 1079 EKQLTFCEAEMDNLTRKLRKLERDYFEMREQVVTAKAGWCAVMRMVKDNGVERRLH 1134 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhhhhhhhcccHHHHHH
Confidence 4455667777788999999999999999988854 211 1456667664
No 294
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=48.27 E-value=2.2e+02 Score=26.14 Aligned_cols=122 Identities=16% Similarity=0.148 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHHHHH
Q 022021 36 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAE 115 (304)
Q Consensus 36 R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~E 115 (304)
-...+..+...+..-|..++..+.+.-.+...+++-+.-+....+.|+.-+.++.. ....+..|
T Consensus 70 ~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~------------~l~~~eqr---- 133 (207)
T PF05010_consen 70 EIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEE------------RLKKEEQR---- 133 (207)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH------------HHHHHHHH----
Confidence 34445555555555555555555555555555555555555544444432111100 00000111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh----hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 116 YTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTE----VEIELKRRLGQLTDHLIQKQAQVEALS 176 (304)
Q Consensus 116 l~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~----~~~elEkRl~~LTe~Li~KQtqlEsl~ 176 (304)
|..|. .-.++++.....+|..+|.....-.. ...-.+-++.+|.+.|-+|-...+.|.
T Consensus 134 y~aLK---~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELt 195 (207)
T PF05010_consen 134 YQALK---AHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELT 195 (207)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 12445566666667666665544111 122223366677777777766655553
No 295
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=48.22 E-value=2.1e+02 Score=25.71 Aligned_cols=64 Identities=27% Similarity=0.350 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 113 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSS 177 (304)
Q Consensus 113 r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~s 177 (304)
+..+..+.+++..++.++..+...|+..+..- ..+..-..+-.++.+|...+-..+.+++.+..
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r-~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~ 131 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGR-EESEEREELLEELEELKKELKELKKELEKYSE 131 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555566666666666666666553222 13445556666788888888888888876653
No 296
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=48.01 E-value=6 Score=42.26 Aligned_cols=51 Identities=24% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 33 ALQLLAKLETANADLAR--------ALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 33 a~~R~~~Le~~n~~la~--------ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
.-.|+..|+.+|.-|.. .+..++..+++.+.....|+..+......+..++
T Consensus 457 l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq 515 (713)
T PF05622_consen 457 LRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQ 515 (713)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888843 3456677777777766666655544444444443
No 297
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=48.00 E-value=36 Score=30.33 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q 022021 124 IQLEDKAKKLEGNI 137 (304)
Q Consensus 124 ~~Le~~l~~~e~eI 137 (304)
++|.++++++.+|+
T Consensus 34 QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 34 QRLKDELRDLKQEL 47 (166)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 33334443333333
No 298
>PRK00106 hypothetical protein; Provisional
Probab=47.99 E-value=3.6e+02 Score=28.40 Aligned_cols=7 Identities=43% Similarity=0.482 Sum_probs=4.5
Q ss_pred cchhHHH
Q 022021 2 CDMASEL 8 (304)
Q Consensus 2 ~~~~~~l 8 (304)
++||.||
T Consensus 29 ~~~~~~~ 35 (535)
T PRK00106 29 AKEAAEL 35 (535)
T ss_pred hHHHHHH
Confidence 4667766
No 299
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=47.97 E-value=96 Score=24.68 Aligned_cols=59 Identities=24% Similarity=0.320 Sum_probs=46.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 27 NNTRMEALQLLAKLETANADLARALAAAQK---KLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 27 ~~Tr~~a~~R~~~Le~~n~~la~ala~~q~---~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
-..+.++......|+.+...+++.++.... ..++...++..+..++..++..+..+..+
T Consensus 35 d~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~ 96 (108)
T PF02403_consen 35 DQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEE 96 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888888889998888887 47788888888888888888888777654
No 300
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=47.45 E-value=1.9e+02 Score=25.16 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 33 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 33 a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
.+.-++-.+.....+...+..+...+.+....+..++..+.........++.
T Consensus 75 ~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~ 126 (177)
T PF13870_consen 75 TVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRK 126 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555555444443
No 301
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=47.25 E-value=2.2e+02 Score=25.73 Aligned_cols=60 Identities=22% Similarity=0.180 Sum_probs=35.6
Q ss_pred hHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 26 HNNTRMEALQLLAKLETANA---DLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 26 H~~Tr~~a~~R~~~Le~~n~---~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
|=..=.-...|+.+|-.--. .+......++.++.+......++.+.+..+|..+..+++.
T Consensus 84 ~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 84 HGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred cCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 43333356667776654444 3444444455555555555677777777777777777654
No 302
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=47.18 E-value=3.3e+02 Score=27.81 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Q 022021 153 ELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL 192 (304)
Q Consensus 153 elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~~ 192 (304)
+.-.+..-|.-.+.+||..+..+.++...-+-+++.+...
T Consensus 193 eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~ 232 (420)
T COG4942 193 EQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRAN 232 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4444777778888888888888888888877777777663
No 303
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=46.59 E-value=41 Score=26.29 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 117 TFIADKIIQLEDKAKKLEGNIEMTRKE 143 (304)
Q Consensus 117 ~~l~~~~~~Le~~l~~~e~eI~~lr~~ 143 (304)
+.+.+++.+|+.++++++.+.++++++
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345678888888888888888887776
No 304
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=46.56 E-value=4.6e+02 Score=29.29 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022021 150 VEIELKRRLGQLTDHLIQKQAQVEALSSE 178 (304)
Q Consensus 150 ~~~elEkRl~~LTe~Li~KQtqlEsl~sE 178 (304)
...+.|+|+ -.++|.|++.-..|
T Consensus 973 ~qee~e~~l------~~e~q~qla~e~ee 995 (1259)
T KOG0163|consen 973 AQEEEERRL------ALELQEQLAKEAEE 995 (1259)
T ss_pred hhhhHHHHH------HHHHHHHHHHHHHH
Confidence 357788887 33455555444433
No 305
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=46.41 E-value=1.6e+02 Score=23.92 Aligned_cols=52 Identities=23% Similarity=0.242 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 022021 110 EILEAEYTFIADKIIQLEDKAKKL--EGNIEMTRKEIEDPTEVEIELKRRLGQL 161 (304)
Q Consensus 110 e~~r~El~~l~~~~~~Le~~l~~~--e~eI~~lr~~l~~~s~~~~elEkRl~~L 161 (304)
+.+.+.++..+.++..+|.++..+ .+++.+|+-.+..-......++.+++.+
T Consensus 38 ~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 38 EKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334444445566667777777666 6667777766655333345555554433
No 306
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=46.32 E-value=1.2e+02 Score=28.73 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 32 EALQLLAKLETANADLARALAAAQKKLEMETNQVAE 67 (304)
Q Consensus 32 ~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~ 67 (304)
.+.+|...|+..+.++.+.|+.++..+.+.+.++..
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~ 212 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLER 212 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777666666666555554443
No 307
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=46.00 E-value=3.5e+02 Score=27.69 Aligned_cols=57 Identities=21% Similarity=0.155 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 28 NTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 28 ~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
.-|..+..+...++.......--++.++....+...++..+-.+-..++....+|..
T Consensus 116 ~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a 172 (499)
T COG4372 116 QEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQA 172 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333333333335556666666677777776666777777777654
No 308
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=45.85 E-value=3e+02 Score=28.54 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 46 DLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 46 ~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
.|...+..++.+++....+-..|+.+++.|.....++.++
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~ 102 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQ 102 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3444444445555555555555555555555555555433
No 309
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=45.44 E-value=3.2e+02 Score=27.15 Aligned_cols=57 Identities=12% Similarity=0.058 Sum_probs=35.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 27 NNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 27 ~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
+.|....-.|+.-|-.+...+-..+...+.++.+.+.+...+..-|..+...+..+.
T Consensus 251 ~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Is 307 (359)
T PF10498_consen 251 SKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEIS 307 (359)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445566666777666666666666666666666666666666655555555544443
No 310
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=44.67 E-value=2.9e+02 Score=26.38 Aligned_cols=133 Identities=19% Similarity=0.191 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHH
Q 022021 30 RMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFER 109 (304)
Q Consensus 30 r~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~ 109 (304)
=.+.-.++..|...|.+|.++|..++..-.. +|..+-++-..+....+.+... .+.....+..=+.+| .
T Consensus 8 l~el~~h~~~L~~~N~~L~~~IqdtE~st~~---~Vr~lLqqy~~~~~~i~~le~~---~~~~l~~ak~eLqe~-----e 76 (258)
T PF15397_consen 8 LQELKKHEDFLTKLNKELIKEIQDTEDSTAL---KVRKLLQQYDIYRTAIDILEYS---NHKQLQQAKAELQEW-----E 76 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHhhHHH---HHHHHHHHHHHHHHHHHHHHcc---ChHHHHHHHHHHHHH-----H
Confidence 3445566778889999999999888876544 4455555555555555554322 000000011111233 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC--hhHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 110 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED--PT--EVEIELKRRLGQLTDHLIQKQAQVE 173 (304)
Q Consensus 110 e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~--~s--~~~~elEkRl~~LTe~Li~KQtqlE 173 (304)
+....++..|++++..|..++.+..+++.-|+.=..+ |- .-...|.+.+.+|.+.--.-...+.
T Consensus 77 ek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~ 144 (258)
T PF15397_consen 77 EKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELN 144 (258)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666666666555544433 21 1245666666666665544443333
No 311
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=44.50 E-value=3.1e+02 Score=26.70 Aligned_cols=41 Identities=15% Similarity=0.343 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 022021 151 EIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 191 (304)
Q Consensus 151 ~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~ 191 (304)
..++-++...+-+..+..+..++.+..+.-.+.-.|..+..
T Consensus 202 ~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 202 ADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777777666555555555444
No 312
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=44.47 E-value=1.2e+02 Score=28.52 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 58 LEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLE 134 (304)
Q Consensus 58 l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e 134 (304)
|.-.+.+-+.+++.|..||.++...++. ...++.|+..++..|..|-+|++=++
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~-----------------------~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQT-----------------------ISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455788899999999999998876544 44467788888899999999887665
No 313
>PRK10869 recombination and repair protein; Provisional
Probab=44.36 E-value=2.8e+02 Score=28.91 Aligned_cols=30 Identities=3% Similarity=0.027 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022021 149 EVEIELKRRLGQLTDHLIQKQAQVEALSSE 178 (304)
Q Consensus 149 ~~~~elEkRl~~LTe~Li~KQtqlEsl~sE 178 (304)
.....|++++..+.+.|..+-..|-..+..
T Consensus 341 ~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 341 DDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777766555554433
No 314
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=44.29 E-value=3.9e+02 Score=27.80 Aligned_cols=12 Identities=8% Similarity=0.063 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 022021 258 AKLWSLVYLVCL 269 (304)
Q Consensus 258 aR~~~~~Y~v~L 269 (304)
.++.++.+.++-
T Consensus 335 ~~VA~lA~~LA~ 346 (514)
T TIGR03319 335 IEVAHLAGIMAA 346 (514)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 315
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=43.77 E-value=1.5e+02 Score=22.75 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 53 AAQKKLEMETNQVAELRQQTELKEVAHEE 81 (304)
Q Consensus 53 ~~q~~l~~~~~~~~~l~q~v~~lE~~l~~ 81 (304)
.++.++......++.|+.+|+.|+..-..
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~ 36 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNE 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444443333
No 316
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=43.76 E-value=4.9e+02 Score=28.76 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 022021 152 IELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEA 188 (304)
Q Consensus 152 ~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLEr 188 (304)
..+..+|..+...+-..+..++.+......+..++..
T Consensus 406 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 406 EEIQEELEELEKELEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444333333333
No 317
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=43.56 E-value=97 Score=30.46 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 35 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 35 ~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
-|+.-|+..+.+|...|..++.+|+-.+..+.-.++++..|+.-+++.+
T Consensus 175 D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddan 223 (323)
T PF08537_consen 175 DRVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDAN 223 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5778889999999999999999999999999999999999998888765
No 318
>PRK01203 prefoldin subunit alpha; Provisional
Probab=43.51 E-value=2.1e+02 Score=24.49 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-----C--------------C---------------
Q 022021 105 VEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE--D-----P--------------T--------------- 148 (304)
Q Consensus 105 ~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~--~-----~--------------s--------------- 148 (304)
.+.|...++++.+.+.+++..|+....+...-|+.+...-. . | .
T Consensus 5 ~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK~ 84 (130)
T PRK01203 5 VEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAEE 84 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEec
Confidence 34455666777777777777777776666666666665210 0 0 0
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 022021 149 --EVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLA 183 (304)
Q Consensus 149 --~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~ 183 (304)
+....+++++..|-+.+-.|+.+++++..-.+.|.
T Consensus 85 ~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 85 RERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00256777888999999999999999987777655
No 319
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=43.50 E-value=36 Score=30.21 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 022021 121 DKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRL 158 (304)
Q Consensus 121 ~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl 158 (304)
++-.+|..+|.++++||+.||+-+..+-.-..+|.++|
T Consensus 29 eE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 29 EEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45578999999999999999988766433346677664
No 320
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=43.45 E-value=56 Score=24.33 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 121 DKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 121 ~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
++|.+|+++...++.|-..||.-++.
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk~~~~p 46 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLKQNASP 46 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 88888999999999999999976643
No 321
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=43.44 E-value=1.5e+02 Score=23.35 Aligned_cols=40 Identities=25% Similarity=0.376 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 44 NADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 44 n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
++++-+.+-.+|..|+....+++.-+..+++|+..-.-|+
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq 57 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQ 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443
No 322
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=43.06 E-value=1.7e+02 Score=23.30 Aligned_cols=58 Identities=21% Similarity=0.355 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC---CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022021 122 KIIQLEDKAKKLEGNIEMTRKEIED---PTEVEIELKRRLGQLTDHLIQKQAQVEALSSEK 179 (304)
Q Consensus 122 ~~~~Le~~l~~~e~eI~~lr~~l~~---~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk 179 (304)
+|..+|+++......++..-..+.. +.++-..+|+-...|...|-....+|..|..|+
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhh
Confidence 4445566666666666666666654 233578888888888888888888888777664
No 323
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.95 E-value=96 Score=29.71 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC--hhHHHHHHHHHHHHHHHHHH
Q 022021 116 YTFIADKIIQLEDKAKKLEGNIEMTRKEIED-PT--EVEIELKRRLGQLTDHLIQK 168 (304)
Q Consensus 116 l~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~-~s--~~~~elEkRl~~LTe~Li~K 168 (304)
++.|+++|++|+.-+..-.+.|-.--.+|++ +. .+.+++|+--+.-+++|+.|
T Consensus 227 i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad~e~~~~~ek~Hke~v~qL~~k 282 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLHQKDQLILEKDKQISNLKADKEYQKELEKKHKERVQQLQKK 282 (305)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888778888877888877 44 35677888766778887766
No 324
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=42.47 E-value=2.5e+02 Score=25.05 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022021 113 EAEYTFIADKIIQLEDKAKKLE 134 (304)
Q Consensus 113 r~El~~l~~~~~~Le~~l~~~e 134 (304)
|.|+..|-.+++.||..+.+.+
T Consensus 124 r~e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 124 RREMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777778888888877755
No 325
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=42.33 E-value=3.7e+02 Score=26.93 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 022021 65 VAELRQQTELKEVAHEELS 83 (304)
Q Consensus 65 ~~~l~q~v~~lE~~l~~l~ 83 (304)
+...++-+++-..+-+.|+
T Consensus 87 lr~i~es~~e~q~e~~qL~ 105 (401)
T PF06785_consen 87 LRKIRESVEERQQESEQLQ 105 (401)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444443
No 326
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=42.25 E-value=24 Score=28.80 Aligned_cols=28 Identities=36% Similarity=0.370 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 57 KLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 57 ~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
+|.+...++..+.+....++..+++|-.
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTa 29 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTA 29 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666666666666643
No 327
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=42.23 E-value=4.7e+02 Score=28.15 Aligned_cols=29 Identities=7% Similarity=0.028 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 29 TRMEALQLLAKLETANADLARALAAAQKK 57 (304)
Q Consensus 29 Tr~~a~~R~~~Le~~n~~la~ala~~q~~ 57 (304)
|..-.-.|+.+++.+..+.+.++...+.+
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666555555555543
No 328
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=41.81 E-value=1.6e+02 Score=22.53 Aligned_cols=49 Identities=22% Similarity=0.361 Sum_probs=29.0
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 17 DAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQT 72 (304)
Q Consensus 17 ~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v 72 (304)
+.+...-..|++| .-+|+..+.++.+.+..+...++....++..++...
T Consensus 22 ekLSk~el~~~~~-------IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 22 EKLSKKELKLNNT-------IKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444445544 556666666666666666666666666666665543
No 329
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=41.66 E-value=3.7e+02 Score=26.74 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=32.7
Q ss_pred HHHHHHHHhHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 18 AFELEKQRHNNTRM-------EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAH 79 (304)
Q Consensus 18 a~~~E~~~H~~Tr~-------~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l 79 (304)
.+|+||...+. |. +--.++.....-+....+.+..+...|+....++...-+++...|..+
T Consensus 197 klEvERV~PqL-Kv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~i 264 (359)
T PF10498_consen 197 KLEVERVLPQL-KVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYI 264 (359)
T ss_pred HHHHHHHhhhh-eeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666554 21 333445555555555555666666666655555555555555544433
No 330
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=41.60 E-value=3e+02 Score=29.52 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 32 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 32 ~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
+...+-.+|..+.+++...+..|++.+..++.++..|+-.++..+..+.++.+
T Consensus 97 ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 97 ELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34445555666777777777777777777777888888888887887777775
No 331
>PRK10698 phage shock protein PspA; Provisional
Probab=41.58 E-value=2.8e+02 Score=25.43 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 40 LETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 40 Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
|+.-..++...+..+...+....+....+..++...+.....+..
T Consensus 29 l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~ 73 (222)
T PRK10698 29 VRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQE 73 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555555544
No 332
>PRK14127 cell division protein GpsB; Provisional
Probab=41.21 E-value=1.9e+02 Score=24.04 Aligned_cols=33 Identities=15% Similarity=0.377 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 113 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 113 r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
-++|..+..++.+|++++..++..+..++.++.
T Consensus 36 ~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 36 IKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555666666666666666666666554
No 333
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=41.00 E-value=4.4e+02 Score=27.50 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 36 LLAKLETANADLARALAAAQKKL---EMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 36 R~~~Le~~n~~la~ala~~q~~l---~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
-+..++..|..+...+..++.+. +.....+..+..++..++.....+..
T Consensus 318 ~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~ 369 (569)
T PRK04778 318 FLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITE 369 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555544442 12223344444445555555544443
No 334
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=40.70 E-value=2.8e+02 Score=25.14 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 36 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHE 80 (304)
Q Consensus 36 R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~ 80 (304)
|-...+.....|...+...+..++....++..|+.++........
T Consensus 93 ~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 93 EKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444433
No 335
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=40.34 E-value=1.3e+02 Score=28.67 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 022021 157 RLGQLTDHLIQKQAQVEALSSEK 179 (304)
Q Consensus 157 Rl~~LTe~Li~KQtqlEsl~sEk 179 (304)
+|+.-++.|+.|+..+.++..+.
T Consensus 115 ~Lr~~n~~L~~~n~el~~~le~~ 137 (292)
T KOG4005|consen 115 SLRAINESLLAKNHELDSELELL 137 (292)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 66667777777777766665544
No 336
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=40.30 E-value=3.6e+02 Score=26.26 Aligned_cols=39 Identities=28% Similarity=0.323 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhcC-CCh--hHHHHHHHHHHHHHHHHHHH
Q 022021 131 KKLEGNIEMTRKEIED-PTE--VEIELKRRLGQLTDHLIQKQ 169 (304)
Q Consensus 131 ~~~e~eI~~lr~~l~~-~s~--~~~elEkRl~~LTe~Li~KQ 169 (304)
..++.+|+.|..-.-+ |.+ .+..+-++|..|-..|=..+
T Consensus 110 ~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~ 151 (294)
T COG1340 110 KSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAK 151 (294)
T ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455544443322 322 35556666666666555555
No 337
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=40.28 E-value=5e+02 Score=27.92 Aligned_cols=74 Identities=16% Similarity=0.192 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 022021 107 FEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRI 186 (304)
Q Consensus 107 ~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qL 186 (304)
.|.-.++..+..|.+..+.|++-.......+..|+ .-.+||...-....+||.++..|...+.+..-+|
T Consensus 358 le~~~l~A~l~~L~se~q~L~~~~~~r~e~~~~Lq-----------~K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L 426 (632)
T PF14817_consen 358 LEVAGLKASLNALRSECQRLKEAAAERQEALRSLQ-----------AKWQRILDFRQLVSEKQEQIRALIKGNSAAKTQL 426 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34556666666666666666555444333222221 1223666677777788888888887777777777
Q ss_pred HHHHh
Q 022021 187 EAVSR 191 (304)
Q Consensus 187 Erl~~ 191 (304)
++...
T Consensus 427 ~q~~~ 431 (632)
T PF14817_consen 427 EQSPA 431 (632)
T ss_pred HhChH
Confidence 77544
No 338
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=40.19 E-value=5.5e+02 Score=28.33 Aligned_cols=152 Identities=18% Similarity=0.275 Sum_probs=96.4
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhh
Q 022021 18 AFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLK 97 (304)
Q Consensus 18 a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~ 97 (304)
.+..++..=.+.+......++........+...|...+.++.+.+.++..+..-...+|..+...... .
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~-----------~ 661 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKES-----------Y 661 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Confidence 45556666677788888888888889999999999999999999999998888888888888766432 1
Q ss_pred HHHhhh--chhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCC----ChhHHHHHHHHHHHHHH
Q 022021 98 RLAASK--GVEFEREILEAEYTFIADKII-------QLEDKAKKLEGNIEMTRKEIEDP----TEVEIELKRRLGQLTDH 164 (304)
Q Consensus 98 ~i~t~~--~~e~E~e~~r~El~~l~~~~~-------~Le~~l~~~e~eI~~lr~~l~~~----s~~~~elEkRl~~LTe~ 164 (304)
+.+..+ ..++|...+..-+..|+.++. ++..+-.+++.+++......... .+...-=|+-|..-++.
T Consensus 662 e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~K 741 (769)
T PF05911_consen 662 ESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEK 741 (769)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHH
Confidence 122222 223444434434444444432 34444555666666555443221 11123334567777888
Q ss_pred HHHHHHHHHHhhhhhH
Q 022021 165 LIQKQAQVEALSSEKA 180 (304)
Q Consensus 165 Li~KQtqlEsl~sEk~ 180 (304)
|..=|..|-+|.....
T Consensus 742 LAECQeTI~sLGkQLk 757 (769)
T PF05911_consen 742 LAECQETIASLGKQLK 757 (769)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888877764443
No 339
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=39.93 E-value=1.4e+02 Score=25.67 Aligned_cols=51 Identities=10% Similarity=0.169 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 34 LQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 34 ~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
.+...+++.....|...+..++..+..+..++..|+.+++.+......|..
T Consensus 79 ~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lek 129 (131)
T PF04859_consen 79 AAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEK 129 (131)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344566777888888888899999999999999999888877766665543
No 340
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=39.58 E-value=4.3e+02 Score=26.96 Aligned_cols=59 Identities=12% Similarity=0.062 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLE-GN---IEMTRKEIEDPTEVEIELKRRLGQLTDHLIQ 167 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e-~e---I~~lr~~l~~~s~~~~elEkRl~~LTe~Li~ 167 (304)
.+....++..|++-+....--|++.- .| |-.=+..++.+.+-..+|...+..+++++-.
T Consensus 255 i~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~QedL~~DL~eDl~k~~etf~l 317 (424)
T PF03915_consen 255 ISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQEDLLSDLKEDLKKASETFAL 317 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666665554444443321 11 1111222222333355666666666666543
No 341
>PRK01156 chromosome segregation protein; Provisional
Probab=39.57 E-value=5.4e+02 Score=28.11 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 52 AAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 52 a~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
..+..++++...++..+.+....++.....++.
T Consensus 412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~ 444 (895)
T PRK01156 412 NEINVKLQDISSKVSSLNQRIRALRENLDELSR 444 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555543
No 342
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=39.47 E-value=6.9e+02 Score=29.28 Aligned_cols=93 Identities=23% Similarity=0.292 Sum_probs=59.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchh
Q 022021 27 NNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVE 106 (304)
Q Consensus 27 ~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e 106 (304)
.-+.++.+.=+..+......+...+..++++++..+.++.++...+...+..+..+...+
T Consensus 201 vk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~-------------------- 260 (1294)
T KOG0962|consen 201 VKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSL-------------------- 260 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--------------------
Confidence 345556666677777777777888888888888888888888877777776666654321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 107 FEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 107 ~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
.|+.....++..|+.+...+..+|+.++..+..
T Consensus 261 -------~el~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~ 293 (1294)
T KOG0962|consen 261 -------KELEKLLKQVKLLDSEHKNLKKQISRLREKILK 293 (1294)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 233333344455555555566666666655553
No 343
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=39.29 E-value=3.2e+02 Score=25.44 Aligned_cols=26 Identities=35% Similarity=0.417 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcC
Q 022021 121 DKIIQLEDKAKKLEGNIEMTRKE-IED 146 (304)
Q Consensus 121 ~~~~~Le~~l~~~e~eI~~lr~~-l~~ 146 (304)
+.+..+.++...+..+|..+|.+ +.-
T Consensus 81 ~~i~r~~eey~~Lk~~in~~R~e~lgl 107 (230)
T PF10146_consen 81 EKIQRLYEEYKPLKDEINELRKEYLGL 107 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 67778888888888999999998 644
No 344
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=39.04 E-value=2.1e+02 Score=27.76 Aligned_cols=21 Identities=10% Similarity=0.208 Sum_probs=9.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHH
Q 022021 170 AQVEALSSEKATLAFRIEAVS 190 (304)
Q Consensus 170 tqlEsl~sEk~al~~qLErl~ 190 (304)
..+|.+......|.+++.-+.
T Consensus 140 ~elEr~K~~~d~L~~e~~~Lr 160 (302)
T PF09738_consen 140 RELERQKRAHDSLREELDELR 160 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444433444444444443
No 345
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=38.99 E-value=3.9e+02 Score=26.35 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 30 RMEALQLLAKLETANADLARALAA 53 (304)
Q Consensus 30 r~~a~~R~~~Le~~n~~la~ala~ 53 (304)
.....+|.+.|+.....|+++|-.
T Consensus 204 ~~~~la~~a~LE~RL~~LE~~lG~ 227 (388)
T PF04912_consen 204 KSQQLARAADLEKRLARLESALGI 227 (388)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCC
Confidence 345677888888888777777665
No 346
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=38.68 E-value=4e+02 Score=26.39 Aligned_cols=152 Identities=22% Similarity=0.287 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh-hHHHHHH-HHHHHHHHHHHHHHHHHHhhhhh-------HHHHHHHHH
Q 022021 118 FIADKIIQLEDKAKKLEGNIEMTRKEIEDPTE-VEIELKR-RLGQLTDHLIQKQAQVEALSSEK-------ATLAFRIEA 188 (304)
Q Consensus 118 ~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~-~~~elEk-Rl~~LTe~Li~KQtqlEsl~sEk-------~al~~qLEr 188 (304)
+.++.+...++++++....+-+.|..-..-++ ...+..- =+..|-+-||.+|++|..+.+-- -.|.-|.|-
T Consensus 183 ~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieS 262 (372)
T COG3524 183 FAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIES 262 (372)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHH
Confidence 44445555555555555544444432222111 2334433 45678899999999998876533 467777777
Q ss_pred HHhhHhhcCCC-CCCCCCCCCCCccccCCCccCC---cchhhhhc---cchhhhhhhhhHHHHHHHHHHHHh--------
Q 022021 189 VSRLLDENKPV-TGSSSRDLEFGAWDLSQSNLRP---LFEEKIRS---GKKHIGSLLKQLDSIFLAGVVFLR-------- 253 (304)
Q Consensus 189 l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~p---~f~~~~~~---~~r~~~~al~~lD~~~l~~~r~lr-------- 253 (304)
+..++...... +++ |+ +.++.. -|.+-.-. ..++|..|+..+++.-+-.-|-.+
T Consensus 263 lrkql~qe~q~isag-------~~----~~sl~~qaAefq~l~lE~~fAekay~AAl~SlEsArieAdrqq~yL~iis~P 331 (372)
T COG3524 263 LRKQLLQEKQAISAG-------GS----SQSLSNQAAEFQRLYLENTFAEKAYAAALTSLESARIEADRQQLYLEIISQP 331 (372)
T ss_pred HHHHHHHHHHHhcCC-------CC----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhheeeeecCC
Confidence 76554433322 111 00 011221 13332111 268888889888888766555433
Q ss_pred ------hchhHH--HHHHHHHHHHHHHHHHHHHhcc
Q 022021 254 ------RNPIAK--LWSLVYLVCLHLWVIYILLSHS 281 (304)
Q Consensus 254 ------r~p~aR--~~~~~Y~v~LHl~V~~~L~~~s 281 (304)
.|| -| .+|..++++|-+|=..++.+++
T Consensus 332 ~~pdlA~yP-~RLyni~at~iill~~yGI~~ll~~s 366 (372)
T COG3524 332 NLPDLAKYP-ERLYNILATFIILLIVYGIVVLLKAS 366 (372)
T ss_pred CchhhhhCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 24 3556666677777666666543
No 347
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=38.63 E-value=4.8e+02 Score=27.25 Aligned_cols=72 Identities=13% Similarity=0.151 Sum_probs=39.3
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 022021 19 FELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 90 (304)
Q Consensus 19 ~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~ 90 (304)
+......|...=.+...++.++.....+..+....+...++.....-..+++++..+...+...++.+.+-+
T Consensus 363 ~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~n 434 (560)
T PF06160_consen 363 LEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSN 434 (560)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333344444444445555555555555555555555555555555555556666666666666665544444
No 348
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=38.56 E-value=3.9e+02 Score=26.20 Aligned_cols=38 Identities=26% Similarity=0.452 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhhhhhHHHHHHHHH
Q 022021 151 EIELKRRLGQLTDHLIQK-QAQVEALSSEKATLAFRIEA 188 (304)
Q Consensus 151 ~~elEkRl~~LTe~Li~K-QtqlEsl~sEk~al~~qLEr 188 (304)
..++|+-|-+==+.|+-| |.+++.|.++|..|+.+|+.
T Consensus 165 KVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 165 KVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344555444444445544 66789999999888877665
No 349
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=38.50 E-value=2e+02 Score=22.87 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLE 134 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e 134 (304)
|..+..|+..+...+...|.+++.+.
T Consensus 38 R~~lE~E~~~l~~~l~~~E~eL~~Lr 63 (85)
T PF15188_consen 38 RRSLEKELNELKEKLENNEKELKLLR 63 (85)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 55555555555555555555555444
No 350
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.16 E-value=3.5e+02 Score=28.29 Aligned_cols=46 Identities=11% Similarity=0.115 Sum_probs=24.8
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 25 RHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQ 70 (304)
Q Consensus 25 ~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q 70 (304)
-|.--=....+++.+|...+++....|+.+++++.+...|+-.+--
T Consensus 352 ~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~i 397 (508)
T KOG3091|consen 352 QHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMI 397 (508)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333445566666666666666666666665555555544433
No 351
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=38.00 E-value=1.7e+02 Score=21.82 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CChhHHHHHHH
Q 022021 121 DKIIQLEDKAKKLEGNIEMTRKEIED-PTEVEIELKRR 157 (304)
Q Consensus 121 ~~~~~Le~~l~~~e~eI~~lr~~l~~-~s~~~~elEkR 157 (304)
..+...+..+...++.|.+|.-++.+ |+.....|..+
T Consensus 25 ~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~k 62 (79)
T PF05008_consen 25 SLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSK 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34566777788888888888888887 55445556555
No 352
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=37.41 E-value=3e+02 Score=24.60 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 44 NADLARALAAAQKKLEMETNQVAELRQQTELKE 76 (304)
Q Consensus 44 n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE 76 (304)
..++...+..++.+..+...++.+++.+.+.++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~e 154 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLE 154 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433333
No 353
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=37.36 E-value=6.8e+02 Score=28.62 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=3.8
Q ss_pred HHHHHHHHhh
Q 022021 167 QKQAQVEALS 176 (304)
Q Consensus 167 ~KQtqlEsl~ 176 (304)
.|....+++.
T Consensus 553 ~kld~~~~~~ 562 (1041)
T KOG0243|consen 553 EKLDRKDRLD 562 (1041)
T ss_pred HHhhhhhccc
Confidence 3333333333
No 354
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=37.17 E-value=2.7e+02 Score=23.87 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 022021 110 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRL 158 (304)
Q Consensus 110 e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl 158 (304)
+.++..+...+--+..|+.+++....+|..||.++..-......||+||
T Consensus 83 ~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 83 QEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3334444455556678999999999999999998876433445666653
No 355
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=36.93 E-value=3.1e+02 Score=24.52 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHHHHH--------HHHHhhhhh
Q 022021 118 FIADKIIQLEDKAKKLEGNIEMTRKEIE-DPTEVEIELKRRLGQLTDHLIQKQA--------QVEALSSEK 179 (304)
Q Consensus 118 ~l~~~~~~Le~~l~~~e~eI~~lr~~l~-~~s~~~~elEkRl~~LTe~Li~KQt--------qlEsl~sEk 179 (304)
.+++.+.+++++++.+...|+.+-.... ...+-..-.++.|++.+..+|++|. +++.|....
T Consensus 82 ~l~d~inE~t~k~~El~~~i~el~~~~~Ks~~~~l~q~~~~~eEtv~~~ieqqk~~r~e~qk~~~~yv~~~ 152 (165)
T PF09602_consen 82 SLNDSINEWTDKLNELSAKIQELLLSPSKSSFSLLSQISKQYEETVKQLIEQQKLTREEWQKVLDAYVEQA 152 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888877754332111 1122345556688889999998876 466666554
No 356
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.63 E-value=43 Score=32.75 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=28.3
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 248 GVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSH 280 (304)
Q Consensus 248 ~~r~lrr~p~aR~~~~~Y~v~LHl~V~~~L~~~ 280 (304)
+++..+.+...|.|.++.+|++-+.+.|+.|+|
T Consensus 283 irka~~~~~~~r~~~lf~llvlsf~lLFldwy~ 315 (316)
T KOG3894|consen 283 IRKAKRNNGGLRVFLLFFLLVLSFSLLFLDWYY 315 (316)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhhcC
Confidence 567778888999999999999999988888865
No 357
>PF14992 TMCO5: TMCO5 family
Probab=36.62 E-value=4e+02 Score=25.75 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022021 116 YTFIADKIIQLEDKAKKLEGNIE 138 (304)
Q Consensus 116 l~~l~~~~~~Le~~l~~~e~eI~ 138 (304)
++.+......++.++.+++.+.+
T Consensus 118 lqql~~~~~~qE~ei~kve~d~~ 140 (280)
T PF14992_consen 118 LQQLLESCASQEKEIAKVEDDYQ 140 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666665554333
No 358
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=36.55 E-value=69 Score=28.54 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022021 51 LAAAQKKLEMETNQVAELRQQT 72 (304)
Q Consensus 51 la~~q~~l~~~~~~~~~l~q~v 72 (304)
|.+++.++.....+-+.|+.++
T Consensus 2 LeD~EsklN~AIERnalLE~EL 23 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL 23 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 4444555544444444444433
No 359
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=36.55 E-value=57 Score=24.19 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 119 IADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 119 l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
+++|+..||.++...+++.+..+.++.
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666555543
No 360
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=36.45 E-value=4.3e+02 Score=26.08 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 022021 38 AKLETANADLARALAAAQKKLE-------METNQVAELRQQTELKEVAHE 80 (304)
Q Consensus 38 ~~Le~~n~~la~ala~~q~~l~-------~~~~~~~~l~q~v~~lE~~l~ 80 (304)
-+|+..|.+|.+.|..||.+-- .+..+++.|.+-|..||....
T Consensus 3 dd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiL 52 (351)
T PF07058_consen 3 DDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAIL 52 (351)
T ss_pred hhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999986532 234556666666666665543
No 361
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=36.42 E-value=1.9e+02 Score=22.90 Aligned_cols=31 Identities=32% Similarity=0.441 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEM 139 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~ 139 (304)
.+.++.|...+.+++..++.++..++.++..
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666655553
No 362
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=36.23 E-value=2.2e+02 Score=22.50 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022021 108 EREILEAEYTFIADKIIQLEDKA 130 (304)
Q Consensus 108 E~e~~r~El~~l~~~~~~Le~~l 130 (304)
|.+.+++|...-+++++.|=.++
T Consensus 54 en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 54 ENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566777777777777665543
No 363
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=36.19 E-value=1e+02 Score=22.61 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 121 DKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 121 ~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
.++..++.++.++.+++..|+.++..
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 364
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=36.05 E-value=2e+02 Score=21.99 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 54 AQKKLEMETNQVAELRQQTELKEVAHEE 81 (304)
Q Consensus 54 ~q~~l~~~~~~~~~l~q~v~~lE~~l~~ 81 (304)
+++.+.+...+++.|...-+.|-.....
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~ 30 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELK 30 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666555555444433
No 365
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=36.03 E-value=84 Score=29.12 Aligned_cols=15 Identities=7% Similarity=-0.308 Sum_probs=8.0
Q ss_pred hhHHHHHHHHHHHHh
Q 022021 239 KQLDSIFLAGVVFLR 253 (304)
Q Consensus 239 ~~lD~~~l~~~r~lr 253 (304)
..+++.+-+++....
T Consensus 209 ~~l~~~~~rl~~~~~ 223 (251)
T PF09753_consen 209 SSLKRESKRLKEHSS 223 (251)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555556655543
No 366
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=35.87 E-value=1.2e+02 Score=24.78 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 113 EAEYTFIADKIIQLEDKAKKLEGNIEMTR 141 (304)
Q Consensus 113 r~El~~l~~~~~~Le~~l~~~e~eI~~lr 141 (304)
++++..+++++..++.+...+..+|..|+
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333444444444444444444444443
No 367
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=35.73 E-value=1.1e+02 Score=25.28 Aligned_cols=36 Identities=31% Similarity=0.330 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
...++.++..+.+++..++.++++..++|..++++.
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455666666666677777777777777777654
No 368
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=35.55 E-value=6.2e+02 Score=27.62 Aligned_cols=10 Identities=20% Similarity=0.461 Sum_probs=5.9
Q ss_pred HHHHHHHHHH
Q 022021 268 CLHLWVIYIL 277 (304)
Q Consensus 268 ~LHl~V~~~L 277 (304)
|-|+|-+=.+
T Consensus 661 C~H~FC~~Cv 670 (698)
T KOG0978|consen 661 CGHVFCEECV 670 (698)
T ss_pred cchHHHHHHH
Confidence 6666665444
No 369
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=35.42 E-value=2.4e+02 Score=25.83 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 151 EIELKRRLGQLTDHLIQKQAQVEALS 176 (304)
Q Consensus 151 ~~elEkRl~~LTe~Li~KQtqlEsl~ 176 (304)
....|.+..-|=..|-.|+..|+.|.
T Consensus 169 l~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 169 LDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55667788888888888888888764
No 370
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=35.08 E-value=1.9e+02 Score=21.60 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 32 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKE 76 (304)
Q Consensus 32 ~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE 76 (304)
+..+|+..++....++.+.+..++...+....++..+...+..++
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666555555555554444444444444433333
No 371
>PF13514 AAA_27: AAA domain
Probab=34.93 E-value=7.2e+02 Score=28.18 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
.+.+..++..++.++..++.++..+..++..++.++..
T Consensus 891 ~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~ 928 (1111)
T PF13514_consen 891 PDELEAELEELEEELEELEEELEELQEERAELEQELEA 928 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666654
No 372
>smart00340 HALZ homeobox associated leucin zipper.
Probab=34.91 E-value=1.3e+02 Score=21.14 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 105 VEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRK 142 (304)
Q Consensus 105 ~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~ 142 (304)
+|.+++-+|.=..++.++|.+| +.|++.||.
T Consensus 3 TEvdCe~LKrcce~LteeNrRL-------~ke~~eLra 33 (44)
T smart00340 3 TEVDCELLKRCCESLTEENRRL-------QKEVQELRA 33 (44)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHh
Confidence 5667777775556666666666 555666663
No 373
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=34.75 E-value=5.6e+02 Score=27.38 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 41 ETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHE 80 (304)
Q Consensus 41 e~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~ 80 (304)
+....-+++.+..+++.+++...++....++..+++....
T Consensus 413 ~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~ 452 (607)
T KOG0240|consen 413 EEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLL 452 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777777777777777777666665543
No 374
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=34.60 E-value=1.9e+02 Score=25.73 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 42 TANADLARALAAAQKKLEMETNQVAELRQQTELKEVAH 79 (304)
Q Consensus 42 ~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l 79 (304)
.+|..+...++.++.+++....++..|.+.....+.|.
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333333333333333333333
No 375
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=34.46 E-value=1.2e+02 Score=23.94 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGN 136 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~e 136 (304)
.++++.|+....+++.+++.+++.++..
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~q 30 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQ 30 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777787777777643
No 376
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.43 E-value=1.3e+02 Score=28.62 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022021 113 EAEYTFIADKIIQLEDKAKKLEG 135 (304)
Q Consensus 113 r~El~~l~~~~~~Le~~l~~~e~ 135 (304)
.+|+.+++++..+|+.+++..+.
T Consensus 56 ~~e~~s~Q~~~~~L~~ev~~~~~ 78 (247)
T COG3879 56 VKELRSLQKKVNTLAAEVEDLEN 78 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433333
No 377
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=34.21 E-value=1.1e+02 Score=24.84 Aligned_cols=27 Identities=15% Similarity=0.043 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 50 ALAAAQKKLEMETNQVAELRQQTELKE 76 (304)
Q Consensus 50 ala~~q~~l~~~~~~~~~l~q~v~~lE 76 (304)
.++..+.+++..+++...|+.+++.|.
T Consensus 35 q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 35 QVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333444444444444443
No 378
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=34.09 E-value=2.1e+02 Score=23.50 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 022021 42 TANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 89 (304)
Q Consensus 42 ~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~ 89 (304)
.....+...|..+-.++.+.+..+..+-++|..|......|+.++...
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666677777777776665443
No 379
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=34.08 E-value=1.3e+02 Score=27.60 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 106 EFEREILEAEYTFIADKIIQLEDKAKKLE 134 (304)
Q Consensus 106 e~E~e~~r~El~~l~~~~~~Le~~l~~~e 134 (304)
+.|.+-+|+||...+++|..|..-+...+
T Consensus 43 e~Ekeelr~EL~kvEeEI~TLrqVLaAKe 71 (208)
T KOG4010|consen 43 EEEKEELRTELAKVEEEIVTLRQVLAAKE 71 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444444433333
No 380
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=33.99 E-value=1.3e+02 Score=22.52 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022021 121 DKIIQLEDKAKKLEGNIEMT 140 (304)
Q Consensus 121 ~~~~~Le~~l~~~e~eI~~l 140 (304)
+++.+.+.++...+..+..+
T Consensus 6 e~l~~ie~~l~~~~~~i~~l 25 (71)
T PF10779_consen 6 EKLNRIETKLDNHEERIDKL 25 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 381
>PRK11519 tyrosine kinase; Provisional
Probab=33.83 E-value=6.3e+02 Score=27.16 Aligned_cols=28 Identities=14% Similarity=0.018 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 29 TRMEALQLLAKLETANADLARALAAAQK 56 (304)
Q Consensus 29 Tr~~a~~R~~~Le~~n~~la~ala~~q~ 56 (304)
|..=.-.|+.+++.+..+.+.+|...+.
T Consensus 268 a~~fL~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 268 SLAFLAQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555544
No 382
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=33.66 E-value=4e+02 Score=24.88 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 60 METNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 60 ~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
....++..++.+.+.|+.....++.
T Consensus 189 ~~~~~~k~le~~k~~Le~~ia~~k~ 213 (259)
T KOG4001|consen 189 RATTEWKVLEDKKKELELKIAQLKK 213 (259)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344555555555555555555543
No 383
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=33.59 E-value=5e+02 Score=25.97 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 022021 33 ALQLLAKLETANADLARALAAAQ-----KKLEMETNQVAELRQ 70 (304)
Q Consensus 33 a~~R~~~Le~~n~~la~ala~~q-----~~l~~~~~~~~~l~q 70 (304)
++.++..+.....++..-|++-. .++.....+.+.|+.
T Consensus 5 ~~~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~ 47 (363)
T COG0216 5 LLEKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEP 47 (363)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHH
Confidence 56677777777777777776553 444444444444444
No 384
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=33.51 E-value=70 Score=31.72 Aligned_cols=132 Identities=18% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhH
Q 022021 23 KQRHNNTRMEALQLLAKLETANADLARALAA----AQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKR 98 (304)
Q Consensus 23 ~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~----~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~ 98 (304)
+.-|+.-|++-....-++....-++...+.. .....+....++.++...+..+...+..++............+..
T Consensus 54 k~~~~qLrE~~et~~KE~~~~eKe~kE~~~K~~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~ 133 (370)
T PF02994_consen 54 KDFKNQLREQDETPEKELKNKEKELKENIIKNLEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKK 133 (370)
T ss_dssp ----------------------------------------------------------------H---------------
T ss_pred hhhHHHHHHhhhhhhhhhhhhhhhhhHhhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q ss_pred HHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 022021 99 LAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLG 159 (304)
Q Consensus 99 i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~ 159 (304)
-.+.. ...+...+..+++++..+++.+..+.+.++.+...++.-.+...++|.|.+
T Consensus 134 ~~~~~-----~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 134 KLENI-----DESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-----HHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
No 385
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=33.29 E-value=4.9e+02 Score=25.71 Aligned_cols=58 Identities=22% Similarity=0.240 Sum_probs=29.7
Q ss_pred hHhhHHH-HHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 022021 26 HNNTRME-ALQLLAKLETANAD----------------LARALAAAQKKLEME-TNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 26 H~~Tr~~-a~~R~~~Le~~n~~----------------la~ala~~q~~l~~~-~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
|..+|.. +-.|++.||....- +..+|..++.++.-. ...++.....+..|-.+++.+.
T Consensus 206 ~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~ 281 (388)
T PF04912_consen 206 QQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELA 281 (388)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433 34577777765443 455666666665555 2344444444444444444443
No 386
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=33.18 E-value=4.1e+02 Score=24.78 Aligned_cols=18 Identities=11% Similarity=0.287 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 022021 127 EDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 127 e~~l~~~e~eI~~lr~~l 144 (304)
.++|+.+.++|..|...+
T Consensus 52 ~eeLrqI~~DIn~lE~iI 69 (230)
T PF10146_consen 52 VEELRQINQDINTLENII 69 (230)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444433333
No 387
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=33.07 E-value=8.1e+02 Score=28.20 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 022021 151 EIELKRRLGQLTDHLIQKQAQVEALSSEKAT 181 (304)
Q Consensus 151 ~~elEkRl~~LTe~Li~KQtqlEsl~sEk~a 181 (304)
..++|.|+.++...+-...++...|..-.++
T Consensus 404 ~~elE~r~k~l~~sver~~~~~~~L~~~i~s 434 (1141)
T KOG0018|consen 404 RAELEARIKQLKESVERLDKRRNKLAAKITS 434 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777775555555544444333
No 388
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=33.07 E-value=1.4e+02 Score=26.50 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 113 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKE 143 (304)
Q Consensus 113 r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~ 143 (304)
+.|...++.++..|+.++..++.++..|..+
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~ 133 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLRQR 133 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555554444433
No 389
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=33.05 E-value=6.7e+02 Score=27.29 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhcC--C--ChhHHHHHHHHHHHHHHH
Q 022021 133 LEGNIEMTRKEIED--P--TEVEIELKRRLGQLTDHL 165 (304)
Q Consensus 133 ~e~eI~~lr~~l~~--~--s~~~~elEkRl~~LTe~L 165 (304)
+.+.++.+.+.+.. | +..+.++-+-+..+.+.|
T Consensus 612 L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l 648 (717)
T PF10168_consen 612 LMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQL 648 (717)
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Confidence 33444444445544 2 444555555555555554
No 390
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=32.90 E-value=2e+02 Score=23.86 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 022021 43 ANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 88 (304)
Q Consensus 43 ~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~ 88 (304)
....+...+..+..++.+.+..+.++-++|..|....+.|+.++..
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666666666666666665443
No 391
>PF08409 DUF1736: Domain of unknown function (DUF1736); InterPro: IPR013618 This domain of unknown function is found in various hypothetical metazoan proteins.
Probab=32.81 E-value=53 Score=25.75 Aligned_cols=28 Identities=14% Similarity=0.335 Sum_probs=22.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhccC
Q 022021 255 NPIAKLWSLVYLVCLHLWVIYILLSHSQ 282 (304)
Q Consensus 255 ~p~aR~~~~~Y~v~LHl~V~~~L~~~s~ 282 (304)
+...|.+.+.|+..+|+|.++.-.+.+.
T Consensus 21 ~~~tR~LT~~yl~~~n~~LLl~P~~L~~ 48 (80)
T PF08409_consen 21 SLLTRWLTYNYLPAFNLWLLLFPSWLCF 48 (80)
T ss_pred cHHHHHHHHHHHHHHHHHHHHCccccCC
Confidence 4567899999999999999887665443
No 392
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=32.79 E-value=2.7e+02 Score=22.65 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC--cch-hhhHHHhhhchhHHHHHHHHHHHHHHH
Q 022021 45 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ--TGI-YLKRLAASKGVEFEREILEAEYTFIAD 121 (304)
Q Consensus 45 ~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~--~~~-~~~~i~t~~~~e~E~e~~r~El~~l~~ 121 (304)
+||-.-|.=.+.+.+-.-..+.++...++.|...+..++-..++..+ ..+ ...|... -.-++.||...+.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~-------~~~l~~eLk~a~~ 76 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGR-------EAELQEELKLARE 76 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccc-------cHHHHHHHHHHHH
Confidence 34444445555555555566666666667777777766654322221 100 0112211 1123555666666
Q ss_pred HHHHHHHHHHHHH
Q 022021 122 KIIQLEDKAKKLE 134 (304)
Q Consensus 122 ~~~~Le~~l~~~e 134 (304)
++..|-.++.+++
T Consensus 77 qi~~Ls~kv~eLq 89 (96)
T PF11365_consen 77 QINELSGKVMELQ 89 (96)
T ss_pred HHHHHhhHHHHHh
Confidence 6666666666655
No 393
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=32.37 E-value=1.8e+02 Score=26.21 Aligned_cols=45 Identities=22% Similarity=0.210 Sum_probs=25.7
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 18 AFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMET 62 (304)
Q Consensus 18 a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~ 62 (304)
++..|+.+++--....=..+-.|+..++.|...|....+||+-.+
T Consensus 113 ~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLT 157 (179)
T PF13942_consen 113 QLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLT 157 (179)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455566665555555555556666666666665555555555443
No 394
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=32.14 E-value=4.8e+02 Score=25.27 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022021 109 REILEAEYTFIADKIIQLEDK 129 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~ 129 (304)
..|+|.|+....+++.+++++
T Consensus 179 F~rlK~ele~tk~Klee~Qne 199 (330)
T KOG2991|consen 179 FLRLKGELEQTKDKLEEAQNE 199 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 556666666666666555554
No 395
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=31.87 E-value=5.9e+02 Score=26.30 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022021 30 RMEALQLLAKLETANADLARAL 51 (304)
Q Consensus 30 r~~a~~R~~~Le~~n~~la~al 51 (304)
|.+++.=+.+||.+-..+.+.|
T Consensus 185 Rre~V~lentlEQEqEalvN~L 206 (552)
T KOG2129|consen 185 RREAVQLENTLEQEQEALVNSL 206 (552)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 5556666666666666665554
No 396
>PRK14011 prefoldin subunit alpha; Provisional
Probab=31.84 E-value=3.4e+02 Score=23.47 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 118 FIADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 118 ~l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
+++.++..|++...++...|+.+...+.
T Consensus 92 ~~~~ri~~l~~~~~~l~~~i~~~~~~~~ 119 (144)
T PRK14011 92 DFKKSVEELDKTKKEGNKKIEELNKEIT 119 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666666666665555443
No 397
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=31.76 E-value=4.8e+02 Score=27.58 Aligned_cols=69 Identities=9% Similarity=0.047 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 63 NQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMT 140 (304)
Q Consensus 63 ~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~l 140 (304)
.++..+...++.+|..+..+...+.++..- ......+...+-.|+..++.++.++.++|..+..+++.+
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKLGDSELY---------DQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhc---------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666777777776666654332100 000000123334566667777777888887777655543
No 398
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=31.74 E-value=2.5e+02 Score=21.97 Aligned_cols=63 Identities=19% Similarity=0.203 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 6 SELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQ 71 (304)
Q Consensus 6 ~~l~~~~~~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~ 71 (304)
-.+|..|..-+++--.++..-+.- +..|+..+...-..-.+-+..+.+.|+-...++..++.+
T Consensus 17 l~~Q~~~l~~ln~tn~~L~~~n~~---s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~k 79 (88)
T PF10241_consen 17 LALQAQTLGRLNKTNEELLNLNDL---SQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAK 79 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544444444444433322 455555555555555555555555555555555555444
No 399
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=31.70 E-value=4.8e+02 Score=25.17 Aligned_cols=8 Identities=13% Similarity=0.144 Sum_probs=3.1
Q ss_pred HHHhhhhh
Q 022021 172 VEALSSEK 179 (304)
Q Consensus 172 lEsl~sEk 179 (304)
.+.|..|.
T Consensus 280 ~~~L~re~ 287 (362)
T TIGR01010 280 YQRLVLQN 287 (362)
T ss_pred HHHHHHHH
Confidence 33343333
No 400
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=31.63 E-value=3.5e+02 Score=24.08 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 35 QLLAKLETANADLARALAAAQKKLEME 61 (304)
Q Consensus 35 ~R~~~Le~~n~~la~ala~~q~~l~~~ 61 (304)
.|..-|+...+.+...++.++..++..
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~k 111 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQK 111 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 401
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.62 E-value=4.5e+02 Score=24.83 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
+-++++|+...++++..+..-++.+..+...++.-|
T Consensus 88 q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiI 123 (246)
T KOG4657|consen 88 QMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEII 123 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 344454444444444444444444444444333333
No 402
>PLN02939 transferase, transferring glycosyl groups
Probab=31.47 E-value=8.2e+02 Score=27.81 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 9 QTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAE 67 (304)
Q Consensus 9 ~~~~~~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~ 67 (304)
+..+.+.+++++.+...-..| -+|+..|+-+..-|..+|..++.++...+..+.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (977)
T PLN02939 235 NMLLKDDIQFLKAELIEVAET----EERVFKLEKERSLLDASLRELESKFIVAQEDVSK 289 (977)
T ss_pred hHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 346677788888888777766 4678888888888888888888888776665544
No 403
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=31.41 E-value=2.6e+02 Score=21.97 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 39 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 39 ~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
+|..+.-+|...|..+-..++..+.++..|...++-|..-+.+|-.
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888888888999999999999999999999888854
No 404
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=31.31 E-value=3.2e+02 Score=22.95 Aligned_cols=79 Identities=23% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchh--hhHHHhhhchhHHH
Q 022021 32 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIY--LKRLAASKGVEFER 109 (304)
Q Consensus 32 ~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~--~~~i~t~~~~e~E~ 109 (304)
....-...+..+|..+++..-..+..++....++...-.....++.....+.++.......-++ +...+.....++|-
T Consensus 31 ~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~e~ee 110 (150)
T PF07200_consen 31 ELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAASEAEE 110 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 022021 110 E 110 (304)
Q Consensus 110 e 110 (304)
+
T Consensus 111 e 111 (150)
T PF07200_consen 111 E 111 (150)
T ss_dssp H
T ss_pred H
No 405
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=31.24 E-value=64 Score=29.52 Aligned_cols=30 Identities=20% Similarity=0.626 Sum_probs=26.8
Q ss_pred HHHhhchhHHHHHHHHHHHHHHHHHHHHHh
Q 022021 250 VFLRRNPIAKLWSLVYLVCLHLWVIYILLS 279 (304)
Q Consensus 250 r~lrr~p~aR~~~~~Y~v~LHl~V~~~L~~ 279 (304)
-|++.|+..=+++++.++.+|+|-+++++.
T Consensus 163 Tf~kqnr~~l~~~~l~~l~~~~w~l~v~~k 192 (196)
T PF06770_consen 163 TFFKQNRFTLIMFVLLILVLNCWNLYVLYK 192 (196)
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 467779999999999999999999999874
No 406
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=31.09 E-value=2.8e+02 Score=22.25 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 110 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 110 e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
+.++.-+..++.++..+++.+.++.+++..++..+
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555566666666666666555544
No 407
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.94 E-value=2.7e+02 Score=26.43 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhh
Q 022021 35 QLLAKLETANADLARALAAAQKKLEMETNQVAELR----QQTELKEVAHEELSQR 85 (304)
Q Consensus 35 ~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~----q~v~~lE~~l~~l~~~ 85 (304)
.|..+|+.++..+.+...+++.++.+....+...+ .....+|+.++.|+.-
T Consensus 50 ~r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~ 104 (247)
T COG3879 50 ARDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRML 104 (247)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 45567788888888888888888888887777777 5555666666666653
No 408
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=30.85 E-value=1.9e+02 Score=21.18 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 49 RALAAAQKKLEMETNQVAELRQQTELK 75 (304)
Q Consensus 49 ~ala~~q~~l~~~~~~~~~l~q~v~~l 75 (304)
..++.++.+++..+.+.+.|+.+++.+
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444
No 409
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=30.82 E-value=5.6e+02 Score=25.69 Aligned_cols=16 Identities=6% Similarity=-0.085 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 022021 109 REILEAEYTFIADKII 124 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~ 124 (304)
.+.++.++..++.++.
T Consensus 245 i~~l~~~i~~~~~~~~ 260 (457)
T TIGR01000 245 IDQLQKSIASYQVQKA 260 (457)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3334444444444333
No 410
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=30.64 E-value=94 Score=23.99 Aligned_cols=28 Identities=25% Similarity=0.194 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 107 FEREILEAEYTFIADKIIQLEDKAKKLE 134 (304)
Q Consensus 107 ~E~e~~r~El~~l~~~~~~Le~~l~~~e 134 (304)
.|.|.+++.+..+.+++..||.++..++
T Consensus 50 EEFd~q~~~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 50 EEFDAQKAVLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666677777766666655
No 411
>COG5293 Predicted ATPase [General function prediction only]
Probab=30.40 E-value=2.1e+02 Score=29.80 Aligned_cols=70 Identities=21% Similarity=0.220 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 66 AELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRK 142 (304)
Q Consensus 66 ~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~ 142 (304)
+-+++++++++.|+-+++..+.+.+...+..+.++.+.+. =.+|+-++++...++.++..++-.|+.+|+
T Consensus 338 ~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~-------~e~y~~l~ee~~~~~~elae~~~rie~l~k 407 (591)
T COG5293 338 DYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGV-------FEKYQTLCEEIIALRGELAELEYRIEPLRK 407 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-------HHHHHHHHHHHHHHhhhHHHHHHhhhHHHH
Confidence 5567778888888888877666666555555555555543 245666667777777777777776776663
No 412
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=30.18 E-value=7.6e+02 Score=27.04 Aligned_cols=46 Identities=17% Similarity=0.073 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 35 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHE 80 (304)
Q Consensus 35 ~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~ 80 (304)
.+-...+....-++.++..++..|....+++...-..+..|++.+.
T Consensus 394 qq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~~RlS 439 (739)
T PF07111_consen 394 QQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLSNRLS 439 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3344444555566677777777777777776666555666665553
No 413
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=30.15 E-value=69 Score=26.07 Aligned_cols=53 Identities=25% Similarity=0.332 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022021 126 LEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSE 178 (304)
Q Consensus 126 Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sE 178 (304)
+...+..+..++..|+.++..-......|+.+...|.+.|+.-|...+.+...
T Consensus 30 l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~ 82 (131)
T PF05103_consen 30 LAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAE 82 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCT----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHH
Confidence 44444444555566666665533344556666677778888777777776554
No 414
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=30.09 E-value=4.3e+02 Score=24.09 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 118 FIADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 118 ~l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
.+..++.+++.....++++|.++|++..
T Consensus 186 ~~v~kn~eie~a~~~Le~ei~~l~~~~~ 213 (221)
T PF05700_consen 186 ELVSKNLEIEVACEELEQEIEQLKRKAA 213 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666667777776666543
No 415
>PRK14127 cell division protein GpsB; Provisional
Probab=30.02 E-value=3.2e+02 Score=22.66 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 022021 57 KLEMETNQVAELRQQTELKEVAHEELSQRNS 87 (304)
Q Consensus 57 ~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~ 87 (304)
.++....+...|+.++..++..+..++.++.
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444555555555555555655555433
No 416
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=29.66 E-value=4.2e+02 Score=23.81 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHH
Q 022021 17 DAFELEKQRHNNTRMEALQLLAK 39 (304)
Q Consensus 17 ~a~~~E~~~H~~Tr~~a~~R~~~ 39 (304)
.+++.|...|...|.......+.
T Consensus 74 R~fK~Qfv~hAt~KLr~iv~~ts 96 (171)
T PF04799_consen 74 RAFKRQFVDHATEKLRLIVSFTS 96 (171)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 47888888998888887776554
No 417
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=29.57 E-value=3.9e+02 Score=23.52 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 50 ALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 50 ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
.+..++++|++.+.++...=..|+.|+...-..+.+
T Consensus 28 E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~r 63 (159)
T PF05384_consen 28 EYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQR 63 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555544444
No 418
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=29.32 E-value=3.3e+02 Score=24.77 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
...+..++..++++++.|++..+.++.||-.|...++
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt 117 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT 117 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444555555555555555555556655555554443
No 419
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=29.28 E-value=4e+02 Score=23.44 Aligned_cols=56 Identities=27% Similarity=0.408 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCh--------hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 121 DKIIQLEDKAKKLEGNIEMTRKEIEDPTE--------VEIELKRRLGQLTDHLIQKQAQVEALS 176 (304)
Q Consensus 121 ~~~~~Le~~l~~~e~eI~~lr~~l~~~s~--------~~~elEkRl~~LTe~Li~KQtqlEsl~ 176 (304)
.++..+-.++.+.++.++.++.+.++.+. ..+.++.-+..|.+.|-.|+..++.+.
T Consensus 118 ~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~Lk 181 (192)
T PF05529_consen 118 RRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALK 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666667777777766654221 123344455555555555555555443
No 420
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=29.16 E-value=8.1e+02 Score=27.03 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C--CCh----hHHHHHHHHHHHHHHHHHHHHHHH----H
Q 022021 107 FEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE--D--PTE----VEIELKRRLGQLTDHLIQKQAQVE----A 174 (304)
Q Consensus 107 ~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~--~--~s~----~~~elEkRl~~LTe~Li~KQtqlE----s 174 (304)
+|..|++.+|......+..||.++...+.....++.++. + +-+ -+..|=.++..|-..|-.|-.++- -
T Consensus 530 ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~ 609 (961)
T KOG4673|consen 530 AELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDM 609 (961)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666777777776666666665441 1 111 244555566666666666655542 2
Q ss_pred hhhhhHHHHHHHHHHHhhHhh
Q 022021 175 LSSEKATLAFRIEAVSRLLDE 195 (304)
Q Consensus 175 l~sEk~al~~qLErl~~~~~~ 195 (304)
+..|+.-|..||+..++.+++
T Consensus 610 ~R~Ei~~LqrRlqaaE~R~ee 630 (961)
T KOG4673|consen 610 FRGEIEDLQRRLQAAERRCEE 630 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888877765444
No 421
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.89 E-value=5.4e+02 Score=25.73 Aligned_cols=67 Identities=12% Similarity=0.162 Sum_probs=35.4
Q ss_pred HHHHHHHHHH-----HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 8 LQTSMMETMD-----AFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTEL 74 (304)
Q Consensus 8 l~~~~~~~~~-----a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~ 74 (304)
++++|+.+.. +.+.|...-.+-....--|..+|..-.++|..-..++++.+...+..++-|..+++.
T Consensus 207 irasvisa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 207 IRASVISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 5666665433 444454444444444444555555555555555555555555555555555555444
No 422
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=28.49 E-value=1.9e+02 Score=24.76 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 37 LAKLETANADLARALAAAQKKLEMETNQVAELRQQTEL 74 (304)
Q Consensus 37 ~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~ 74 (304)
..-|+.+|..|-.||..+|..+++...-++-|+++++.
T Consensus 87 I~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 87 IEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKI 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 46788999999999999999999999999999888664
No 423
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=28.38 E-value=4e+02 Score=23.18 Aligned_cols=41 Identities=27% Similarity=0.243 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 43 ANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 43 ~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
+..++...+..++..++...+++..+......+....+.|+
T Consensus 7 ~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~ 47 (145)
T COG1730 7 ELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLE 47 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666665555555554444
No 424
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=28.38 E-value=6.2e+02 Score=25.38 Aligned_cols=113 Identities=17% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHHHHHH
Q 022021 37 LAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEY 116 (304)
Q Consensus 37 ~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~El 116 (304)
...|+.+.......++.+-..+-....++..++.+...++.....-=++ -......+.+++++..
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~---------------~~~~~~~~~~~l~~~~ 351 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQ---------------ILASLPNELALLEQQE 351 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHH---------------HHHhchhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 022021 117 TFIADKIIQLEDKAKK---LEGNIEMTRKEIEDPTEVEIELKRRLGQLTDH 164 (304)
Q Consensus 117 ~~l~~~~~~Le~~l~~---~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~ 164 (304)
..+.+++..++.++.+ .+.+...|.+++......-..|=.|+++++..
T Consensus 352 ~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~ 402 (458)
T COG3206 352 AALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQELSIQ 402 (458)
T ss_pred HHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 425
>COG5570 Uncharacterized small protein [Function unknown]
Probab=28.30 E-value=1.2e+02 Score=22.19 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 33 ALQLLAKLETANADLARALAAAQK 56 (304)
Q Consensus 33 a~~R~~~Le~~n~~la~ala~~q~ 56 (304)
...++++|+..|.++...|...-.
T Consensus 3 ieshl~eL~kkHg~le~ei~ea~n 26 (57)
T COG5570 3 IESHLAELEKKHGNLEREIQEAMN 26 (57)
T ss_pred HHHHHHHHHHhhchHHHHHHHHhc
Confidence 445677777777777666655443
No 426
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=27.94 E-value=9.6e+02 Score=27.48 Aligned_cols=66 Identities=12% Similarity=0.170 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 13 METMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVA 78 (304)
Q Consensus 13 ~~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~ 78 (304)
.+-++.++.|.+.-..-=.+..+...-....+..|.+.+..++.+|+....++..++..+..+...
T Consensus 447 ~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 447 AEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555443333344444444444455555555555555555555555555555544444
No 427
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=27.85 E-value=2e+02 Score=21.28 Aligned_cols=52 Identities=27% Similarity=0.338 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 34 LQLLAKLETANADLARALAAAQKK-LEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 34 ~~R~~~Le~~n~~la~ala~~q~~-l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
+.++.++......+-.++..-... +.....++.+...+++.|+..+..++..
T Consensus 10 i~~E~ki~~Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~ 62 (70)
T PF02185_consen 10 IDKELKIKEGAENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQQR 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555666666666654222222 5566666666666667777777766654
No 428
>PF15456 Uds1: Up-regulated During Septation
Probab=27.65 E-value=3.7e+02 Score=22.63 Aligned_cols=67 Identities=25% Similarity=0.253 Sum_probs=44.0
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 18 AFELEKQRHNNTRMEALQLLAKLETANADLARALAAA------------------QKKLEMETNQVAELRQQTELKEVAH 79 (304)
Q Consensus 18 a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~------------------q~~l~~~~~~~~~l~q~v~~lE~~l 79 (304)
.++.|... =.+|-+.+-|--.|+...-+.+.++..+ +..+.....+|+++.+++..+|+..
T Consensus 26 ~LKkEl~~-L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le~R~ 104 (124)
T PF15456_consen 26 ELKKELRS-LDSRLEYLRRKLALESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKLENRL 104 (124)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444332 3455666665555676666666666555 5566677788888888888888888
Q ss_pred HHHhhh
Q 022021 80 EELSQR 85 (304)
Q Consensus 80 ~~l~~~ 85 (304)
..++++
T Consensus 105 ~~~~~r 110 (124)
T PF15456_consen 105 AEVRQR 110 (124)
T ss_pred HHHHHH
Confidence 887765
No 429
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=27.62 E-value=3.6e+02 Score=24.57 Aligned_cols=68 Identities=24% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 022021 116 YTFIADKIIQLEDKAKKLEGNIEMTRKEIED-PTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLA 183 (304)
Q Consensus 116 l~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~-~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~ 183 (304)
+.+|..+..+-+.++.++.+....-+.++.. ...-...|.+++..|-+.|.+|...+..+..+..++.
T Consensus 6 l~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~ 74 (206)
T PF14988_consen 6 LEYLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALK 74 (206)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
No 430
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=27.51 E-value=2.4e+02 Score=23.62 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHhh
Q 022021 154 LKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDE 195 (304)
Q Consensus 154 lEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~~~~~ 195 (304)
+|.++.+|...|=.=-+++.++..|+++|++..+++...+.+
T Consensus 13 le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 13 LEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 333333333333333345788889999999999998765443
No 431
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=27.40 E-value=5.2e+02 Score=24.23 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 117 TFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 117 ~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
...++.+..|+.++.+...+|++|...++.
T Consensus 70 ~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~ 99 (272)
T KOG4552|consen 70 QKREQLMRTLEAHVEKRDEVIQQLQKNLKS 99 (272)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344566778888888889999998887765
No 432
>KOG2257 consensus N-acetylglucosaminyltransferase complex, subunit PIG-P, required for phosphatidylinositol biosynthesis [Function unknown]
Probab=27.14 E-value=56 Score=28.19 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcccccc
Q 022021 261 WSLVYLVCLHLWVIYILLSHSQSSAEARSG 290 (304)
Q Consensus 261 ~~~~Y~v~LHl~V~~~L~~~s~~~~~~~~~ 290 (304)
+|+.|++..-.+|.+++|.++|++--.+-|
T Consensus 11 gF~~yiv~~~~~ViylIWai~P~~~l~~~g 40 (135)
T KOG2257|consen 11 GFVLYIVSWTLFVIYLIWAITPVPILESLG 40 (135)
T ss_pred hhHHHHHHHHHHHHHHHhhcccHHHHhhcC
Confidence 699999999999999999999987443333
No 433
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=27.05 E-value=4.6e+02 Score=23.47 Aligned_cols=45 Identities=20% Similarity=0.224 Sum_probs=20.2
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 25 RHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELR 69 (304)
Q Consensus 25 ~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~ 69 (304)
+....+.+++..-.+++.+..+..+.|...++.+......++.-.
T Consensus 54 ~~~eakee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~ 98 (201)
T PF12072_consen 54 AELEAKEEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRL 98 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444544444444444444444444433333333
No 434
>KOG4074 consensus Leucine zipper nuclear factor [Function unknown]
Probab=27.03 E-value=1.8e+02 Score=28.72 Aligned_cols=55 Identities=40% Similarity=0.604 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 022021 132 KLEGNIEMTRKEIEDPTEVEIELKR-RLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 189 (304)
Q Consensus 132 ~~e~eI~~lr~~l~~~s~~~~elEk-Rl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl 189 (304)
+++++..-++++++-++....+|.+ =+.++.|-| |+++|.|..+|.-|..+++..
T Consensus 141 ~l~~e~~~l~~ql~iqt~vNsELK~LlVASvgddL---Q~~ve~LtedK~qLa~~~~~~ 196 (383)
T KOG4074|consen 141 ELERELDLLRKQLNIQTKVNSELKRLLVASVGDDL---QGQVEALTEDKVQLAHRVDEY 196 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666 556666655 778888888887777666654
No 435
>PLN02943 aminoacyl-tRNA ligase
Probab=26.82 E-value=2.9e+02 Score=30.99 Aligned_cols=28 Identities=11% Similarity=0.337 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 022021 120 ADKIIQLEDKAKKLEGNIEMTRKEIEDP 147 (304)
Q Consensus 120 ~~~~~~Le~~l~~~e~eI~~lr~~l~~~ 147 (304)
+.+..+|+.++.+++.+|++++..++++
T Consensus 888 ~~E~~rL~K~l~klekei~~~~~kLsN~ 915 (958)
T PLN02943 888 SAEVERLSKRLSKMQTEYDALAARLSSP 915 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3455678888899999999999999873
No 436
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=26.80 E-value=7.3e+02 Score=25.74 Aligned_cols=14 Identities=14% Similarity=0.257 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 022021 6 SELQTSMMETMDAF 19 (304)
Q Consensus 6 ~~l~~~~~~~~~a~ 19 (304)
.++....-.+++.+
T Consensus 225 e~i~~~~~~~~~~L 238 (563)
T TIGR00634 225 EKLRELSQNALAAL 238 (563)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 437
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.75 E-value=9.4e+02 Score=26.98 Aligned_cols=31 Identities=10% Similarity=0.194 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 115 EYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 115 El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
+++....++++++.++.+.+++|+.+-..++
T Consensus 800 ~l~e~~~~l~~~q~e~~~~keq~~t~~~~ts 830 (970)
T KOG0946|consen 800 NLSEESTRLQELQSELTQLKEQIQTLLERTS 830 (970)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667777777777777776665553
No 438
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=26.63 E-value=5.4e+02 Score=27.11 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 022021 124 IQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTD 163 (304)
Q Consensus 124 ~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe 163 (304)
.+++..+++.++.+.....++.+ .+...+|++|+.+|+.
T Consensus 167 ~~~~~~~k~~~~~w~~~~~~Lp~-~~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 167 EEIEKSLKAMQQKWKKRKKDLPN-KQDLEEYKKRLEAIKK 205 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHh
Confidence 34444455555555544444442 3334555556655554
No 439
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=26.48 E-value=4e+02 Score=22.54 Aligned_cols=39 Identities=28% Similarity=0.161 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 44 NADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 44 n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l 82 (304)
.++..+.+..+|..++..-.+-..+...+...+..+.++
T Consensus 8 ~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~El 46 (119)
T COG1382 8 VQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEEL 46 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556555555555555555555555555555
No 440
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=26.42 E-value=6.2e+02 Score=24.78 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 022021 125 QLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 125 ~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
.+|+++..++.+---||+++..
T Consensus 218 s~eERL~QlqsEN~LLrQQLdd 239 (305)
T PF14915_consen 218 SLEERLSQLQSENMLLRQQLDD 239 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666666666643
No 441
>PF14992 TMCO5: TMCO5 family
Probab=26.32 E-value=6e+02 Score=24.57 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022021 151 EIELKRRLGQLTDHLIQKQAQVEALSSEK 179 (304)
Q Consensus 151 ~~elEkRl~~LTe~Li~KQtqlEsl~sEk 179 (304)
....+.++.+++...+.+-.+++.+.++.
T Consensus 111 lq~sk~~lqql~~~~~~qE~ei~kve~d~ 139 (280)
T PF14992_consen 111 LQFSKNKLQQLLESCASQEKEIAKVEDDY 139 (280)
T ss_pred cHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555777777777777777777765443
No 442
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=26.25 E-value=6e+02 Score=24.51 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 35 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 35 ~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
.|...|-....-....+...+..+.....++..++..+..++.+++..+.
T Consensus 130 ~r~~~L~~~g~is~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 179 (370)
T PRK11578 130 SRQQRLAKTQAVSQQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKT 179 (370)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433333333334444444444445555555555555555555554
No 443
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=25.98 E-value=5.3e+02 Score=23.83 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 151 EIELKRRLGQLTDHLIQKQAQVEALSS 177 (304)
Q Consensus 151 ~~elEkRl~~LTe~Li~KQtqlEsl~s 177 (304)
..++|.||+.|--.|++|=++|--|..
T Consensus 138 ~qemE~RIK~LhaqI~EKDAmIkVLQq 164 (205)
T PF12240_consen 138 CQEMENRIKALHAQIAEKDAMIKVLQQ 164 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999877753
No 444
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.65 E-value=9.1e+02 Score=26.41 Aligned_cols=67 Identities=13% Similarity=0.087 Sum_probs=44.7
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 18 AFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 18 a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
-++..++.-++++.-...+..+++...+++..-.......+.+.+.+|..+.+.+..+...+..+..
T Consensus 127 q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~ek 193 (716)
T KOG4593|consen 127 QLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEK 193 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667777777888888888777777766666666666666666666666555555544443
No 445
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=25.54 E-value=2.4e+02 Score=21.77 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 022021 124 IQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 124 ~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
..|+++|..+--|.-.||+++..
T Consensus 11 ~~lQnEWDa~mLE~f~LRk~l~~ 33 (70)
T PF08606_consen 11 STLQNEWDALMLENFTLRKQLDQ 33 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666655544
No 446
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=25.51 E-value=3e+02 Score=20.81 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 51 LAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 51 la~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
|..++.+++..-..+..|+..|..|-.....++
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~ 34 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWR 34 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666555543
No 447
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=25.50 E-value=4.9e+02 Score=26.83 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 108 EREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 108 E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
|.+-++.|...+.+.+..|+.++..+..+++++..++..
T Consensus 275 el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~ 313 (511)
T PF09787_consen 275 ELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG 313 (511)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566666666666666666666666666665555543
No 448
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=24.80 E-value=7.6e+02 Score=25.25 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------CCh------hHHHHHHHHHHHHHHHHHHH
Q 022021 108 EREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED------------PTE------VEIELKRRLGQLTDHLIQKQ 169 (304)
Q Consensus 108 E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~------------~s~------~~~elEkRl~~LTe~Li~KQ 169 (304)
+...+++++..+++++..+++++..++..+.-+..--.. ..+ -..-|..++..+-..+..-.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAE 151 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777776666666555433210 001 02334446666666666666
Q ss_pred HHHHHhhhhhHHHHHHHHHHHh
Q 022021 170 AQVEALSSEKATLAFRIEAVSR 191 (304)
Q Consensus 170 tqlEsl~sEk~al~~qLErl~~ 191 (304)
.+++.+..+...++-+|.++..
T Consensus 152 ~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 152 RRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 6666666666666666666543
No 449
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=24.59 E-value=5.7e+02 Score=23.70 Aligned_cols=15 Identities=20% Similarity=0.047 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 022021 68 LRQQTELKEVAHEEL 82 (304)
Q Consensus 68 l~q~v~~lE~~l~~l 82 (304)
+.+-+..++.++..+
T Consensus 29 l~Q~ird~~~~l~~a 43 (225)
T COG1842 29 LEQAIRDMESELAKA 43 (225)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444433
No 450
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=24.48 E-value=7.3e+02 Score=24.93 Aligned_cols=31 Identities=16% Similarity=0.347 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 110 EILEAEYTFIADKIIQLEDKAKKLEGNIEMT 140 (304)
Q Consensus 110 e~~r~El~~l~~~~~~Le~~l~~~e~eI~~l 140 (304)
..++..+..+.+++.++++++..++++++..
T Consensus 378 ~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 378 KKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444455555555555555444433
No 451
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=24.27 E-value=3.9e+02 Score=21.69 Aligned_cols=25 Identities=20% Similarity=0.334 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 121 DKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 121 ~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
+.+...+..+...+..++..|..+.
T Consensus 75 ~~i~~q~~~l~~~~~~~e~~r~~l~ 99 (141)
T TIGR02473 75 QRIQQQQQELALLQQEVEAKRERLL 99 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555553
No 452
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=24.24 E-value=4.5e+02 Score=22.35 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 43 ANADLARALAAAQKKLEMETNQVAE 67 (304)
Q Consensus 43 ~n~~la~ala~~q~~l~~~~~~~~~ 67 (304)
+.-.+++|++.+-..|+.....+..
T Consensus 37 Trr~m~~A~~~v~kql~~vs~~l~~ 61 (126)
T PF07889_consen 37 TRRSMSDAVASVSKQLEQVSESLSS 61 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544433
No 453
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.24 E-value=91 Score=22.55 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022021 121 DKIIQLEDKAKKLEGNIEMTR 141 (304)
Q Consensus 121 ~~~~~Le~~l~~~e~eI~~lr 141 (304)
.++.+++.++++++++++.+|
T Consensus 48 ~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 48 RRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 455566666666677766654
No 454
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=24.14 E-value=1.3e+02 Score=27.63 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 022021 122 KIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRL 158 (304)
Q Consensus 122 ~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl 158 (304)
+-.+|..++.++|+||.-||+=+..+..--.+|.++|
T Consensus 45 Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 45 EKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3358999999999999999988877665567888876
No 455
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=24.08 E-value=2.6e+02 Score=29.59 Aligned_cols=58 Identities=19% Similarity=0.309 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CC---h--hHHHHHHHHHHHHHHHH
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED-----PT---E--VEIELKRRLGQLTDHLI 166 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~-----~s---~--~~~elEkRl~~LTe~Li 166 (304)
+||+|.|+++|+.....|.-+..|+-.|-..|.+---. .. + -..|.-|||..+.-+|+
T Consensus 25 ldRIKdEfqflqaqyhslkleceKlA~EKteMqRhYvmYyEmSygLniemhKq~EI~KRLn~i~aQl~ 92 (705)
T KOG0639|consen 25 LDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQTEIAKRLNTICAQLI 92 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhheeeeeeeccccchhhHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999988888877665555443211 11 1 25778889999888876
No 456
>PLN02678 seryl-tRNA synthetase
Probab=23.92 E-value=4.5e+02 Score=26.92 Aligned_cols=81 Identities=16% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 63 NQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRK 142 (304)
Q Consensus 63 ~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~ 142 (304)
.++-.+-++...+...++.++.+....+ .+|-.......+.+-+.+|...+.+++..++.+++.++++|..+-.
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~s------k~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~ 106 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLN------KEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLK 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhcC-CCh
Q 022021 143 EIED-PTE 149 (304)
Q Consensus 143 ~l~~-~s~ 149 (304)
.+-+ +.+
T Consensus 107 ~iPNi~~~ 114 (448)
T PLN02678 107 TIGNLVHD 114 (448)
T ss_pred hCCCCCCc
No 457
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=23.86 E-value=5.6e+02 Score=23.33 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 022021 151 EIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIE 187 (304)
Q Consensus 151 ~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLE 187 (304)
...||.+...+.-.-++-+.....|..+...++.+..
T Consensus 177 L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~ 213 (221)
T PF05700_consen 177 LRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAA 213 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999988888888888888888777655444433
No 458
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=23.71 E-value=3.6e+02 Score=21.09 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 37 LAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 37 ~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
+..|+..|..|.....-.+..+.....+...=-..+..+..|++...+
T Consensus 24 l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~k 71 (88)
T PF10241_consen 24 LGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFK 71 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555444444445555544443
No 459
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.70 E-value=6.1e+02 Score=23.75 Aligned_cols=60 Identities=12% Similarity=0.170 Sum_probs=32.2
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 18 AFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 18 a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
.++...+.|+..- .+|..+..++...++.+...+++.+-++..+.+.-..+-.+++.+-+
T Consensus 44 ~le~~~~~~~~~~-------~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 44 QLERISNAHSQLL-------TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555443 34444445555555555555666666666666655555566665543
No 460
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=23.47 E-value=3.5e+02 Score=23.52 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 022021 151 EIELKRRLGQLTDHL 165 (304)
Q Consensus 151 ~~elEkRl~~LTe~L 165 (304)
...+|.|++.|.+.|
T Consensus 56 q~~~e~RI~~L~~~L 70 (158)
T PRK05892 56 LARLDDRINELDRRL 70 (158)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666665554443
No 461
>PF14770 TMEM18: Transmembrane protein 18
Probab=23.38 E-value=59 Score=27.50 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCCc------ccccchhhhHHhhhhc
Q 022021 263 LVYLVCLHLWVIYILLSHSQSSA------EARSGAVFSLENINNT 301 (304)
Q Consensus 263 ~~Y~v~LHl~V~~~L~~~s~~~~------~~~~~a~~~~~~~~~~ 301 (304)
++|+++.|+..+++++..-.... ..--+-++|.|.||.-
T Consensus 17 l~~L~~fH~~~~~~~~~tr~~~~~q~~lf~~ll~~v~~aE~iN~~ 61 (123)
T PF14770_consen 17 LIGLIAFHVLLLLLAILTRRRYNFQMILFLILLLLVYCAEYINEY 61 (123)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666544444442222211 1223356677777753
No 462
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=23.27 E-value=4.9e+02 Score=28.08 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 34 LQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 34 ~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
-.-+.+||+..++|...|+.+-.++++.+..+..-+..+..|++..+..+..
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~ 143 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQ 143 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHH
Confidence 3446777888888888888888888888888877777777777777766654
No 463
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=23.05 E-value=62 Score=26.77 Aligned_cols=28 Identities=25% Similarity=0.479 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcccccc
Q 022021 259 KLWSLVYLVCLHLWVIYILLSHSQSSAEARSG 290 (304)
Q Consensus 259 R~~~~~Y~v~LHl~V~~~L~~~s~~~~~~~~~ 290 (304)
-.|.+.|++.-|+|+ .|++...+|-|..
T Consensus 26 sffllayllmahiwl----swfsnnqhclrtm 53 (138)
T PF05663_consen 26 SFFLLAYLLMAHIWL----SWFSNNQHCLRTM 53 (138)
T ss_pred HHHHHHHHHHHHHHH----HHHcCcHHHHHHH
Confidence 346688999999995 5666665555543
No 464
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=22.90 E-value=4.3e+02 Score=21.75 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 113 EAEYTFIADKIIQLEDKAKKLEGNIE 138 (304)
Q Consensus 113 r~El~~l~~~~~~Le~~l~~~e~eI~ 138 (304)
.+|++++.=+|..|..++..+..++.
T Consensus 46 eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 46 EQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666666666665
No 465
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=22.65 E-value=4e+02 Score=26.19 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022021 149 EVEIELKRRLGQLTDHLIQKQAQVEALSSEK 179 (304)
Q Consensus 149 ~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk 179 (304)
+..++||..+..++++|-.-|.+++.|.+.-
T Consensus 168 PD~seLe~~~s~~sk~Lq~lqq~v~~Lask~ 198 (325)
T PF06694_consen 168 PDVSELEKKASELSKQLQSLQQQVAELASKH 198 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4579999999999999999999999988754
No 466
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=22.55 E-value=1.3e+02 Score=22.29 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 022021 124 IQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 124 ~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
.+|++.+..++.||.+++..+..
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666666666666666644
No 467
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.49 E-value=94 Score=26.23 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 022021 258 AKLWSLVYLVCLHLWVIYILLSH 280 (304)
Q Consensus 258 aR~~~~~Y~v~LHl~V~~~L~~~ 280 (304)
.+.-..+||++.-+++||++|++
T Consensus 94 sg~~l~~~m~~f~lV~~fi~~~~ 116 (118)
T KOG3385|consen 94 SGISLLCWMAVFSLVAFFILWVW 116 (118)
T ss_pred CCcchHHHHHHHHHHHHHHhhee
Confidence 45556778877777777777754
No 468
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=22.48 E-value=1.8e+02 Score=22.60 Aligned_cols=27 Identities=26% Similarity=0.182 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 114 AEYTFIADKIIQLEDKAKKLEGNIEMT 140 (304)
Q Consensus 114 ~El~~l~~~~~~Le~~l~~~e~eI~~l 140 (304)
++|..+-++-..|++.|..+|++|-.+
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qIy~~ 28 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQIYDK 28 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666655533
No 469
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=22.45 E-value=2.1e+02 Score=22.77 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHHHhh
Q 022021 239 KQLDSIFLAGVVFLRR 254 (304)
Q Consensus 239 ~~lD~~~l~~~r~lrr 254 (304)
++||.+.-+-..|+|-
T Consensus 20 DQL~qlVsrN~sfird 35 (84)
T PF06143_consen 20 DQLEQLVSRNRSFIRD 35 (84)
T ss_pred HHHHHHHHhChHHHHH
Confidence 4555555555455543
No 470
>PTZ00464 SNF-7-like protein; Provisional
Probab=22.42 E-value=6.1e+02 Score=23.27 Aligned_cols=28 Identities=11% Similarity=0.328 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 119 IADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 119 l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
+.+++..|+.++.+++.+++..|..+..
T Consensus 23 l~~r~~~l~kKi~~ld~E~~~ak~~~k~ 50 (211)
T PTZ00464 23 IGGRSEVVDARINKIDAELMKLKEQIQR 50 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477778888888888888888888753
No 471
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=22.41 E-value=7.6e+02 Score=24.40 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 022021 123 IIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 123 ~~~Le~~l~~~e~eI~~lr~~l 144 (304)
+.++++++++....+.++..-+
T Consensus 70 i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 70 IEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred HHHHHHHHHHHHhhHHHHHhhC
Confidence 3445555555555555555444
No 472
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=22.16 E-value=1.2e+02 Score=25.85 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=13.0
Q ss_pred HHHhhchhHHHHHHHHHHH
Q 022021 250 VFLRRNPIAKLWSLVYLVC 268 (304)
Q Consensus 250 r~lrr~p~aR~~~~~Y~v~ 268 (304)
+.++|+|..++.+++.+++
T Consensus 4 ~~~~r~~~~~~~li~~~~~ 22 (164)
T TIGR03061 4 KRLRKNKLLRIALIAIMLI 22 (164)
T ss_pred HHhhcCcHHHHHHHHHHHH
Confidence 5678899888665555544
No 473
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=22.05 E-value=4.4e+02 Score=21.53 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=37.7
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 34 LQLLAKLETA-----NADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 34 ~~R~~~Le~~-----n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
+-|+++|-.+ ..-|...+..++..+.....++..++..+.+....+..++++
T Consensus 60 lfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 60 LFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466665554 455777788888888888888888888888888877777653
No 474
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=21.93 E-value=3.8e+02 Score=20.72 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 150 VEIELKRRLGQLTDHLIQKQAQVEAL 175 (304)
Q Consensus 150 ~~~elEkRl~~LTe~Li~KQtqlEsl 175 (304)
.-..|+..++.|.+.|=.|=.||..|
T Consensus 51 ~R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 51 KRRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888999999999988888888766
No 475
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=21.78 E-value=3.8e+02 Score=27.41 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 33 ALQLLAKLETANADLARALAAA---------QKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 33 a~~R~~~Le~~n~~la~ala~~---------q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
+..|+.+|+.+.......+... +..++....++..|++.++.++..+..+...
T Consensus 168 ~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~ 229 (475)
T PF10359_consen 168 IQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDS 229 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5679999999999988888884 6778888888999999999999999998863
No 476
>PLN03188 kinesin-12 family protein; Provisional
Probab=21.75 E-value=1.4e+03 Score=27.04 Aligned_cols=66 Identities=18% Similarity=0.204 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhH
Q 022021 117 TFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLL 193 (304)
Q Consensus 117 ~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~~~ 193 (304)
.++.+++..|+.++++.-+-|+ .-+||=-||+.--+.+..-|...-...-|..-+-.++|++.+.+
T Consensus 1176 ~~~~~enk~l~~qlrdtaeav~-----------aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh 1241 (1320)
T PLN03188 1176 RYLRDENKSLQAQLRDTAEAVQ-----------AAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKH 1241 (1320)
T ss_pred HHHHHhhHHHHHHHhhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555888888888777664443 23555556665554443333333333334334445566666655
No 477
>PF03981 Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone ; InterPro: IPR021150 Saccharomyces cerevisiae ubiquinol-cytochrome C chaperone is required for assembly of coenzyme QF-2-cytochrome C reductase. It appears to be found in a number of different organisms including Homo sapiens, Caenorhabditis elegans and Rhizobium meliloti. This entry also contains bacterial proteins belonging to the UPF0174 family.
Probab=21.53 E-value=70 Score=26.50 Aligned_cols=19 Identities=21% Similarity=0.524 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhccC
Q 022021 264 VYLVCLHLWVIYILLSHSQ 282 (304)
Q Consensus 264 ~Y~v~LHl~V~~~L~~~s~ 282 (304)
+++++||+|+.+.=+...+
T Consensus 13 f~~~~lh~~l~~~RLk~~~ 31 (141)
T PF03981_consen 13 FQMLGLHVWLVLRRLKAEG 31 (141)
T ss_pred HHHHHHHHHHHHHHHcccc
Confidence 5889999999887665554
No 478
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=21.40 E-value=5.3e+02 Score=26.00 Aligned_cols=37 Identities=30% Similarity=0.327 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 110 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 110 e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
+-+++|...+.+++..+++++..+++++..+-..+-+
T Consensus 69 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN 105 (425)
T PRK05431 69 EALIAEVKELKEEIKALEAELDELEAELEELLLRIPN 105 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3456667777788888888888888888877666633
No 479
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=21.32 E-value=2.3e+02 Score=24.78 Aligned_cols=11 Identities=27% Similarity=0.090 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 022021 151 EIELKRRLGQL 161 (304)
Q Consensus 151 ~~elEkRl~~L 161 (304)
...+|.||+.|
T Consensus 66 ~~~~e~rI~~L 76 (160)
T PRK06342 66 MARPLRDLRYL 76 (160)
T ss_pred HHHHHHHHHHH
Confidence 45556666443
No 480
>PF13755 Sensor_TM1: Sensor N-terminal transmembrane domain
Probab=21.22 E-value=1.3e+02 Score=23.59 Aligned_cols=32 Identities=28% Similarity=0.305 Sum_probs=27.5
Q ss_pred HHHhhchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 022021 250 VFLRRNPIAKLWSLVYLVCLHLWVIYILLSHS 281 (304)
Q Consensus 250 r~lrr~p~aR~~~~~Y~v~LHl~V~~~L~~~s 281 (304)
..++++|++|-++++=++.|-++|.-+||--+
T Consensus 7 ~~l~~S~LtrrIl~~Nl~aL~vLv~G~LyLn~ 38 (79)
T PF13755_consen 7 FRLRRSPLTRRILAFNLLALAVLVGGILYLNQ 38 (79)
T ss_pred hhhcCCcHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 35678999999999999999999999888443
No 481
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=20.87 E-value=8.8e+02 Score=26.75 Aligned_cols=16 Identities=19% Similarity=0.044 Sum_probs=10.2
Q ss_pred HHHHHHHHHhhhcccC
Q 022021 74 LKEVAHEELSQRNSNT 89 (304)
Q Consensus 74 ~lE~~l~~l~~~~~~~ 89 (304)
.|+..++.|++++.++
T Consensus 433 ~Le~elekLk~eilKA 448 (762)
T PLN03229 433 ELEGEVEKLKEQILKA 448 (762)
T ss_pred cHHHHHHHHHHHHHhc
Confidence 3566666777666665
No 482
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=20.86 E-value=4.2e+02 Score=20.77 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 118 FIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 118 ~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
.+..++..|+.+..+++.+|+.+..++
T Consensus 4 ~l~~~~~~L~~~~~~l~~~i~~~~~~l 30 (83)
T PF07061_consen 4 SLEAEIQELKEQIEQLEKEISELEAEL 30 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445677777777778888888888776
No 483
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=20.85 E-value=2.2e+02 Score=22.41 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 115 EYTFIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 115 El~~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
++..+++++..+++++..+..++..++.++
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555443
No 484
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=20.79 E-value=2.7e+02 Score=26.45 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 46 DLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 46 ~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
++...+..+..+....+..++.++.+|+.-+..+..++..
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~ 216 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRS 216 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6777888888888888888888888888888888887654
No 485
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.74 E-value=1e+03 Score=25.15 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 108 EREILEAEYTFIADKIIQLEDKAK 131 (304)
Q Consensus 108 E~e~~r~El~~l~~~~~~Le~~l~ 131 (304)
|.+.++.|+....+.+..+..++.
T Consensus 220 e~d~lk~e~~~~~~~i~~~~~~l~ 243 (555)
T TIGR03545 220 EFDKLKKEGKADKQKIKSAKNDLQ 243 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666565555444443
No 486
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=20.71 E-value=1.7e+03 Score=27.77 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 022021 151 EIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEA 188 (304)
Q Consensus 151 ~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLEr 188 (304)
...+..||..|-+-|-....+|+.- .+.+-..+.++.
T Consensus 1455 ~~~v~~Rf~~L~~Pl~~R~~~Le~S-~e~hQf~~dvdd 1491 (2473)
T KOG0517|consen 1455 TLAVLERFEDLLGPLQERRKQLEAS-KELHQFVRDVDD 1491 (2473)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHhhhH
Confidence 4567778988988888888888764 233444444443
No 487
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.67 E-value=5e+02 Score=21.56 Aligned_cols=89 Identities=18% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------------------------------CC
Q 022021 107 FEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE---------------------------------------DP 147 (304)
Q Consensus 107 ~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~---------------------------------------~~ 147 (304)
.....+++++..+...+..+...+.....-++.+..--+ +.
T Consensus 13 ~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~vE~~~ 92 (140)
T PRK03947 13 AQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSAEKDL 92 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEEEEecH
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHhh
Q 022021 148 TEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDE 195 (304)
Q Consensus 148 s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~~~~~ 195 (304)
.+....|++|+..|.+.+=.=+..+..+......+.-+++++......
T Consensus 93 ~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~ 140 (140)
T PRK03947 93 DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEAAA 140 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 488
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=20.66 E-value=9.3e+02 Score=24.71 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 58 LEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 58 l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
.+....-+..|+.+...++.++..|+
T Consensus 281 a~~~~~lI~~Le~qLa~~~aeL~~L~ 306 (434)
T PRK15178 281 ITAIYQLIAGFETQLAEAKAEYAQLM 306 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666666666554
No 489
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=20.66 E-value=6.7e+02 Score=23.04 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 107 FEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTR 141 (304)
Q Consensus 107 ~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr 141 (304)
.|+|-...++.+++....+|..+..++...|..++
T Consensus 76 ~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k 110 (207)
T PF05010_consen 76 KERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYK 110 (207)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44666666677777666666666666555555554
No 490
>PRK00106 hypothetical protein; Provisional
Probab=20.61 E-value=1e+03 Score=25.11 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 022021 157 RLGQLTDHLIQK 168 (304)
Q Consensus 157 Rl~~LTe~Li~K 168 (304)
.++.=...+|.+
T Consensus 181 ~~~~~~~~~i~~ 192 (535)
T PRK00106 181 KLTHEIATRIRE 192 (535)
T ss_pred HHHHHHHHHHHH
Confidence 333333444444
No 491
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=20.30 E-value=7.8e+02 Score=23.70 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Q 022021 114 AEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL 192 (304)
Q Consensus 114 ~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~~ 192 (304)
.++..++.++...+.++...+.+.++.+.-.+...-+..+|+. .-..+...|.+++.+.+..+.+...++.++..
T Consensus 106 a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 180 (370)
T PRK11578 106 ATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDT----AATELAVKQAQIGTIDAQIKRNQASLDTAKTN 180 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444333333333222222223344444 23455666777777777777777777776553
No 492
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=20.23 E-value=9.8e+02 Score=24.85 Aligned_cols=7 Identities=14% Similarity=0.173 Sum_probs=5.0
Q ss_pred HHHHHHH
Q 022021 183 AFRIEAV 189 (304)
Q Consensus 183 ~~qLErl 189 (304)
+++||++
T Consensus 207 E~qLerI 213 (475)
T PRK10361 207 EVVLTRV 213 (475)
T ss_pred HHHHHHH
Confidence 7777773
No 493
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=20.23 E-value=80 Score=28.53 Aligned_cols=35 Identities=26% Similarity=0.532 Sum_probs=0.0
Q ss_pred hhchhHHH--HHHHHHHHHHHHHHHHHHhccCCCccc
Q 022021 253 RRNPIAKL--WSLVYLVCLHLWVIYILLSHSQSSAEA 287 (304)
Q Consensus 253 rr~p~aR~--~~~~Y~v~LHl~V~~~L~~~s~~~~~~ 287 (304)
+|-|++|+ |.+.++.|+-++|||..+||-.+=+.|
T Consensus 80 ~rlk~t~lI~~alAfl~Cv~~Lv~YKa~wYDqsCPdG 116 (186)
T PF06387_consen 80 ERLKVTRLIAFALAFLGCVVFLVMYKAIWYDQSCPDG 116 (186)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhheeeeecccCCCc
No 494
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=20.19 E-value=8.6e+02 Score=24.13 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccCCCcchhhhHHHhhhchhHHHHHHHHHHHHHHHHH
Q 022021 45 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ-RNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKI 123 (304)
Q Consensus 45 ~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~-~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~El~~l~~~~ 123 (304)
.+|.-+++.++..+......+..++.++......++..+. . ......+.+|.. .|-++.
T Consensus 87 ~~y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~----------------l~~a~~~~~R~~----~L~~~g 146 (352)
T COG1566 87 RDYRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQD----------------LDQAQNELERRA----ELAQRG 146 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHH----HHHhcC
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 022021 124 IQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEA 188 (304)
Q Consensus 124 ~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLEr 188 (304)
.--.+++......+...+.+++... ......+..|......+|.++.++...+.--.+.|++
T Consensus 147 ~vs~~~~~~a~~a~~~A~A~~~~a~---~~~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~~ 208 (352)
T COG1566 147 VVSREELDRARAALQAAEAALAAAQ---AAQKQNLALLESEVSGAQAQVASAEAALDQAKLDLER 208 (352)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhC
No 495
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=20.10 E-value=4e+02 Score=25.24 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 16 MDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETN 63 (304)
Q Consensus 16 ~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~ 63 (304)
..|+...+.+=+.--.++..|...|+.+|+.|...+..++.++.....
T Consensus 203 N~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 203 NEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.06 E-value=4.6e+02 Score=20.94 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHhhhcc-cC-
Q 022021 37 LAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEV-------------------------AHEELSQRNS-NT- 89 (304)
Q Consensus 37 ~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~-------------------------~l~~l~~~~~-~~- 89 (304)
+..|......|...+..++..+........++....+.++. +-..+--.++ +.
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ 80 (129)
T cd00890 1 LQELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVY 80 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEE
Q ss_pred -CCcchhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 90 -HQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMT 140 (304)
Q Consensus 90 -~~~~~~~~~i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~l 140 (304)
..+...+...+..+ .+.++.++..++..+..++.++..+...++.+
T Consensus 81 ve~~~~eA~~~l~~r-----~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 81 VEKSLEEAIEFLKKR-----LETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred EEecHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!