Query 022021
Match_columns 304
No_of_seqs 130 out of 149
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 12:49:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022021.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022021hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.5 0.043 1.5E-06 47.2 24.1 65 14-78 6-70 (284)
2 1c1g_A Tropomyosin; contractIl 97.3 0.064 2.2E-06 46.1 24.3 64 19-82 25-88 (284)
3 2v71_A Nuclear distribution pr 97.3 0.033 1.1E-06 49.1 19.3 157 19-191 8-168 (189)
4 3na7_A HP0958; flagellar bioge 97.2 0.094 3.2E-06 47.5 22.1 117 15-145 12-128 (256)
5 3na7_A HP0958; flagellar bioge 96.6 0.2 6.8E-06 45.4 18.3 66 114-179 90-155 (256)
6 1i84_S Smooth muscle myosin he 96.5 0.0046 1.6E-07 67.4 8.2 21 32-52 882-902 (1184)
7 2dfs_A Myosin-5A; myosin-V, in 95.9 0.048 1.7E-06 59.1 12.3 123 66-191 917-1044(1080)
8 3o0z_A RHO-associated protein 95.5 1 3.6E-05 38.8 16.9 121 38-195 30-154 (168)
9 2v66_B Nuclear distribution pr 95.5 0.14 4.8E-06 41.5 10.5 105 64-184 4-108 (111)
10 3vkg_A Dynein heavy chain, cyt 95.2 2.7 9.3E-05 50.5 24.2 87 109-195 2016-2102(3245)
11 2v71_A Nuclear distribution pr 95.1 0.22 7.4E-06 43.9 11.3 55 30-84 69-123 (189)
12 3vkg_A Dynein heavy chain, cyt 94.1 9.3 0.00032 46.1 24.8 33 152-184 2017-2049(3245)
13 2b9c_A Striated-muscle alpha t 92.9 3.1 0.00011 34.9 13.8 45 121-165 101-145 (147)
14 3oja_B Anopheles plasmodium-re 92.6 5.7 0.00019 39.0 17.5 81 109-196 504-584 (597)
15 2dfs_A Myosin-5A; myosin-V, in 92.4 2.2 7.6E-05 46.3 15.3 35 38-72 917-951 (1080)
16 2v66_B Nuclear distribution pr 92.3 3.2 0.00011 33.4 12.5 68 14-81 35-102 (111)
17 2v4h_A NF-kappa-B essential mo 92.2 3.8 0.00013 32.9 13.1 40 43-82 25-64 (110)
18 3q8t_A Beclin-1; autophagy, AT 91.6 3.1 0.00011 32.4 11.4 73 119-191 23-95 (96)
19 3oja_B Anopheles plasmodium-re 90.6 2.6 8.9E-05 41.5 12.6 23 39-61 467-489 (597)
20 2fxo_A Myosin heavy chain, car 90.2 6.3 0.00022 32.0 12.6 67 19-85 25-91 (129)
21 2ocy_A RAB guanine nucleotide 90.0 8.2 0.00028 32.7 15.8 31 152-182 111-141 (154)
22 3ol1_A Vimentin; structural ge 89.0 6.8 0.00023 31.5 11.7 34 133-166 67-100 (119)
23 3mq9_A Bone marrow stromal ant 88.7 3.2 0.00011 39.8 11.4 36 110-145 432-467 (471)
24 2eqb_B RAB guanine nucleotide 88.3 8 0.00027 30.4 12.5 53 32-84 9-61 (97)
25 1go4_E MAD1 (mitotic arrest de 88.1 0.92 3.1E-05 36.0 5.7 46 49-95 12-57 (100)
26 2zqm_A Prefoldin beta subunit 87.4 8.6 0.0003 29.8 11.9 102 42-144 6-107 (117)
27 3hnw_A Uncharacterized protein 87.3 7.8 0.00027 32.1 11.3 26 112-137 108-133 (138)
28 1fxk_A Prefoldin; archaeal pro 86.4 9.4 0.00032 29.2 11.7 99 45-144 4-102 (107)
29 2ocy_A RAB guanine nucleotide 86.3 14 0.00049 31.2 16.4 20 125-144 76-95 (154)
30 3s4r_A Vimentin; alpha-helix, 85.6 11 0.00037 29.1 12.7 76 57-143 17-92 (93)
31 3o0z_A RHO-associated protein 85.5 17 0.00057 31.3 14.8 30 109-138 106-135 (168)
32 1l8d_A DNA double-strand break 85.0 10 0.00035 29.4 10.4 93 48-145 9-102 (112)
33 3m91_A Proteasome-associated A 85.0 3.4 0.00012 28.8 6.6 47 26-74 2-48 (51)
34 3ghg_A Fibrinogen alpha chain; 84.6 11 0.00039 37.7 12.7 35 110-144 120-154 (562)
35 2fxo_A Myosin heavy chain, car 84.2 15 0.00052 29.6 17.0 30 116-145 92-121 (129)
36 3ol1_A Vimentin; structural ge 82.7 17 0.00058 29.1 13.5 8 136-143 109-116 (119)
37 2jee_A YIIU; FTSZ, septum, coi 82.6 14 0.00048 28.1 11.2 26 109-134 50-75 (81)
38 2xdj_A Uncharacterized protein 82.3 8.4 0.00029 29.3 8.5 51 35-85 6-56 (83)
39 3efg_A Protein SLYX homolog; x 81.4 1.6 5.6E-05 32.9 4.2 26 119-144 12-37 (78)
40 4gkw_A Spindle assembly abnorm 81.0 23 0.00078 29.5 17.6 39 157-195 99-137 (167)
41 3cvf_A Homer-3, homer protein 80.8 4.9 0.00017 30.5 6.6 45 30-74 8-52 (79)
42 3swk_A Vimentin; cytoskeleton, 80.4 15 0.00051 27.9 9.4 34 132-165 46-79 (86)
43 3cve_A Homer protein homolog 1 80.3 12 0.0004 27.9 8.4 42 32-73 4-45 (72)
44 2efr_A General control protein 80.1 26 0.00089 29.6 16.9 53 33-85 33-85 (155)
45 2v4h_A NF-kappa-B essential mo 78.2 25 0.00084 28.2 10.8 32 39-70 28-59 (110)
46 3u1c_A Tropomyosin alpha-1 cha 77.5 23 0.00079 27.5 14.3 20 30-49 18-37 (101)
47 2eqb_B RAB guanine nucleotide 76.6 17 0.00056 28.6 8.7 18 152-169 79-96 (97)
48 2lw1_A ABC transporter ATP-bin 76.2 12 0.00039 28.4 7.7 55 122-177 23-77 (89)
49 2i1j_A Moesin; FERM, coiled-co 75.6 4.9 0.00017 40.5 6.9 53 30-82 330-382 (575)
50 3u1c_A Tropomyosin alpha-1 cha 74.6 28 0.00095 27.0 15.1 17 69-85 36-52 (101)
51 3efg_A Protein SLYX homolog; x 73.8 17 0.00058 27.2 7.8 52 39-90 11-62 (78)
52 3viq_B Mating-type switching p 73.1 16 0.00054 28.1 7.6 33 117-149 4-36 (85)
53 1m1j_C Fibrinogen gamma chain; 72.9 33 0.0011 33.3 11.7 91 46-145 24-115 (409)
54 1ci6_A Transcription factor AT 72.5 11 0.00038 26.9 6.3 32 112-143 28-59 (63)
55 3cvf_A Homer-3, homer protein 72.1 29 0.001 26.2 9.1 28 54-81 11-38 (79)
56 3jsv_C NF-kappa-B essential mo 71.9 30 0.001 27.0 9.0 38 45-82 5-42 (94)
57 3oja_A Leucine-rich immune mol 71.1 73 0.0025 30.3 16.7 34 106-139 427-460 (487)
58 1f5n_A Interferon-induced guan 70.8 38 0.0013 34.2 12.1 131 13-145 437-584 (592)
59 2jee_A YIIU; FTSZ, septum, coi 70.8 32 0.0011 26.1 12.4 72 36-130 7-78 (81)
60 2e7s_A RAB guanine nucleotide 70.6 5.9 0.0002 32.9 5.0 56 125-180 64-127 (135)
61 3u59_A Tropomyosin beta chain; 70.6 34 0.0012 26.3 14.1 66 16-81 4-69 (101)
62 3tnu_A Keratin, type I cytoske 70.5 40 0.0014 27.1 10.4 26 57-82 46-71 (131)
63 3mq7_A Bone marrow stromal ant 69.8 43 0.0015 27.1 11.7 95 32-145 15-109 (121)
64 3tnu_B Keratin, type II cytosk 69.2 43 0.0015 26.8 11.7 28 55-82 42-69 (129)
65 3jsv_C NF-kappa-B essential mo 68.2 40 0.0014 26.2 11.3 42 39-80 6-50 (94)
66 3nmd_A CGMP dependent protein 66.9 16 0.00056 27.1 6.2 35 111-145 30-64 (72)
67 3mq9_A Bone marrow stromal ant 66.9 62 0.0021 30.7 12.3 27 115-141 444-470 (471)
68 2oqq_A Transcription factor HY 66.1 16 0.00054 24.4 5.4 29 117-145 13-41 (42)
69 2lw1_A ABC transporter ATP-bin 66.0 40 0.0014 25.3 8.8 63 62-134 21-83 (89)
70 2dgc_A Protein (GCN4); basic d 65.2 14 0.00048 26.5 5.5 37 109-145 25-61 (63)
71 3vmx_A Voltage-gated hydrogen 63.6 27 0.00092 24.0 6.3 38 109-146 6-43 (48)
72 1t2k_D Cyclic-AMP-dependent tr 62.9 20 0.0007 25.1 6.0 33 110-142 18-50 (61)
73 3m91_A Proteasome-associated A 62.8 27 0.00091 24.2 6.4 38 32-69 13-50 (51)
74 1ic2_A Tropomyosin alpha chain 62.3 45 0.0015 24.6 9.8 50 33-82 18-67 (81)
75 1ci6_A Transcription factor AT 62.2 21 0.00072 25.4 6.0 36 109-144 18-53 (63)
76 3qh9_A Liprin-beta-2; coiled-c 62.0 49 0.0017 25.0 9.2 31 52-82 15-45 (81)
77 2yy0_A C-MYC-binding protein; 61.6 19 0.00064 25.0 5.5 32 107-145 19-50 (53)
78 3swk_A Vimentin; cytoskeleton, 60.6 52 0.0018 24.8 10.4 37 105-141 47-83 (86)
79 1jnm_A Proto-oncogene C-JUN; B 59.5 24 0.00082 24.8 5.9 38 109-146 17-54 (62)
80 2no2_A HIP-I, huntingtin-inter 58.2 66 0.0023 25.3 13.4 40 44-83 3-42 (107)
81 3cve_A Homer protein homolog 1 58.2 54 0.0018 24.3 8.1 24 118-141 11-34 (72)
82 2i1j_A Moesin; FERM, coiled-co 57.0 7.8 0.00027 39.0 4.0 24 124-147 408-431 (575)
83 3swf_A CGMP-gated cation chann 56.9 43 0.0015 25.0 7.0 20 66-85 3-22 (74)
84 1x79_B RAB GTPase binding effe 56.8 46 0.0016 26.6 7.7 25 122-146 46-70 (112)
85 1dh3_A Transcription factor CR 56.2 28 0.00096 24.2 5.7 37 109-145 17-53 (55)
86 4h22_A Leucine-rich repeat fli 56.1 40 0.0014 26.7 7.1 19 65-83 32-50 (103)
87 1wt6_A Myotonin-protein kinase 55.9 45 0.0015 25.3 7.0 25 153-177 49-73 (81)
88 3a7o_A Autophagy protein 16; c 55.0 32 0.0011 25.5 5.9 36 110-145 21-56 (75)
89 1deq_A Fibrinogen (alpha chain 54.7 1.5E+02 0.0053 28.5 14.7 22 123-144 136-157 (390)
90 2e7s_A RAB guanine nucleotide 54.5 32 0.0011 28.5 6.6 84 47-145 44-127 (135)
91 2akf_A Coronin-1A; coiled coil 53.6 35 0.0012 21.1 5.0 28 111-138 3-30 (32)
92 1gd2_E Transcription factor PA 53.2 27 0.00092 25.6 5.4 37 109-145 24-60 (70)
93 1deq_A Fibrinogen (alpha chain 52.5 70 0.0024 30.8 9.5 47 115-161 135-188 (390)
94 3oja_A Leucine-rich immune mol 52.2 1.6E+02 0.0055 27.9 12.9 19 126-144 433-451 (487)
95 4dk0_A Putative MACA; alpha-ha 52.0 1.4E+02 0.0047 27.0 12.3 38 109-146 117-154 (369)
96 3bas_A Myosin heavy chain, str 51.6 75 0.0026 23.9 11.6 33 159-191 52-84 (89)
97 1t2k_D Cyclic-AMP-dependent tr 51.2 59 0.002 22.6 8.6 51 21-71 6-58 (61)
98 2wt7_A Proto-oncogene protein 50.8 42 0.0014 23.7 6.0 31 111-141 20-50 (63)
99 3hnw_A Uncharacterized protein 50.7 1E+02 0.0035 25.2 11.9 29 118-146 72-100 (138)
100 3htk_A Structural maintenance 50.4 44 0.0015 22.9 6.0 15 160-174 44-58 (60)
101 1joc_A EEA1, early endosomal a 50.0 96 0.0033 24.7 9.1 53 29-81 5-57 (125)
102 2wq1_A General control protein 48.3 46 0.0016 21.0 5.0 28 117-144 3-30 (33)
103 3m48_A General control protein 47.9 32 0.0011 21.8 4.3 29 117-145 3-31 (33)
104 1ic2_A Tropomyosin alpha chain 47.0 83 0.0028 23.1 11.0 29 38-66 37-65 (81)
105 3iox_A AGI/II, PA; alpha helix 46.5 2.3E+02 0.0079 28.1 15.1 12 290-301 305-316 (497)
106 1kd8_A GABH AIV, GCN4 acid bas 46.0 23 0.00079 22.8 3.4 28 117-144 4-31 (36)
107 3swy_A Cyclic nucleotide-gated 45.9 67 0.0023 21.7 6.7 19 67-85 2-20 (46)
108 3m9b_A Proteasome-associated A 45.7 12 0.00041 34.1 2.9 64 133-198 29-96 (251)
109 2k48_A Nucleoprotein; viral pr 45.6 96 0.0033 24.6 7.7 22 12-33 33-54 (107)
110 1gu4_A CAAT/enhancer binding p 45.4 40 0.0014 25.2 5.4 34 113-146 42-75 (78)
111 3s4r_A Vimentin; alpha-helix, 43.8 1.1E+02 0.0036 23.4 9.8 62 121-191 23-84 (93)
112 3i00_A HIP-I, huntingtin-inter 43.1 1.3E+02 0.0044 24.2 10.7 11 30-40 35-45 (120)
113 3a7p_A Autophagy protein 16; c 42.7 1.5E+02 0.0052 24.9 13.6 36 48-83 67-102 (152)
114 3fpp_A Macrolide-specific effl 42.2 1.2E+02 0.0041 27.1 9.3 35 110-144 117-151 (341)
115 4etp_A Kinesin-like protein KA 41.5 80 0.0028 30.2 8.2 24 121-144 38-61 (403)
116 1kd8_B GABH BLL, GCN4 acid bas 40.2 57 0.0019 21.0 4.6 28 117-144 4-31 (36)
117 3nmd_A CGMP dependent protein 39.7 1.1E+02 0.0038 22.6 6.9 45 45-89 22-66 (72)
118 3c3f_A Alpha/beta peptide with 39.7 70 0.0024 20.3 4.9 28 117-144 4-31 (34)
119 2yy0_A C-MYC-binding protein; 39.4 64 0.0022 22.2 5.3 25 107-131 26-50 (53)
120 1l8d_A DNA double-strand break 39.4 1.2E+02 0.0043 23.0 13.0 38 49-86 3-40 (112)
121 3ghg_A Fibrinogen alpha chain; 39.3 1.2E+02 0.0039 30.6 9.0 14 176-189 232-245 (562)
122 1x8y_A Lamin A/C; structural p 38.2 75 0.0026 23.8 6.0 18 65-82 5-22 (86)
123 1x79_B RAB GTPase binding effe 37.7 1.5E+02 0.0053 23.6 8.1 46 37-85 22-67 (112)
124 2oxj_A Hybrid alpha/beta pepti 37.6 78 0.0027 20.1 5.0 29 117-145 4-32 (34)
125 3a7o_A Autophagy protein 16; c 37.4 1.2E+02 0.0042 22.4 9.1 40 46-85 15-54 (75)
126 1uo4_A General control protein 36.3 81 0.0028 20.1 4.8 29 117-145 4-32 (34)
127 3fpp_A Macrolide-specific effl 36.2 1.4E+02 0.0047 26.8 8.6 78 109-190 71-148 (341)
128 1zxa_A CGMP-dependent protein 36.1 52 0.0018 24.0 4.5 32 115-146 19-50 (67)
129 3ghg_C Fibrinogen gamma chain; 36.1 3.1E+02 0.01 26.5 11.4 109 45-163 23-133 (411)
130 4dk0_A Putative MACA; alpha-ha 35.9 1.8E+02 0.0061 26.2 9.4 80 109-192 72-151 (369)
131 2w83_C C-JUN-amino-terminal ki 35.6 1.1E+02 0.0038 22.9 6.3 51 23-73 25-75 (77)
132 2pnv_A Small conductance calci 34.5 61 0.0021 21.6 4.3 33 33-65 7-39 (43)
133 3c3g_A Alpha/beta peptide with 34.4 88 0.003 19.7 4.9 28 117-144 3-30 (33)
134 2zdi_C Prefoldin subunit alpha 33.9 1.3E+02 0.0045 24.4 7.3 44 40-83 7-53 (151)
135 4dzn_A Coiled-coil peptide CC- 33.8 84 0.0029 19.3 4.8 23 119-141 7-29 (33)
136 3a2a_A Voltage-gated hydrogen 33.4 1.1E+02 0.0037 21.6 5.6 38 109-146 13-50 (58)
137 2efr_A General control protein 33.1 2.2E+02 0.0074 23.9 22.2 67 110-177 73-140 (155)
138 1hjb_A Ccaat/enhancer binding 33.0 1.6E+02 0.0055 22.3 7.7 14 35-48 43-56 (87)
139 3mov_A Lamin-B1; LMNB1, B-type 32.8 1.7E+02 0.0057 22.4 8.5 43 38-83 15-57 (95)
140 3qh9_A Liprin-beta-2; coiled-c 32.4 1.6E+02 0.0055 22.2 9.1 55 32-86 23-77 (81)
141 3u06_A Protein claret segregat 32.2 70 0.0024 30.8 6.1 55 107-161 3-57 (412)
142 3thf_A Protein shroom; coiled- 31.8 2.6E+02 0.0087 24.3 10.7 98 48-145 86-186 (190)
143 1dip_A Delta-sleep-inducing pe 31.4 51 0.0017 24.6 3.8 25 121-145 22-46 (78)
144 3ra3_B P2F; coiled coil domain 31.4 55 0.0019 19.5 3.2 20 121-140 7-26 (28)
145 1lwu_C Fibrinogen gamma chain; 31.3 1.4E+02 0.0048 27.9 7.9 44 35-78 12-55 (323)
146 1lwu_C Fibrinogen gamma chain; 31.0 60 0.0021 30.4 5.3 27 119-145 10-36 (323)
147 3s9g_A Protein hexim1; cyclin 30.8 1.3E+02 0.0045 23.6 6.3 23 121-143 65-87 (104)
148 3ni0_A Bone marrow stromal ant 30.6 1.9E+02 0.0066 22.5 8.3 46 42-87 39-84 (99)
149 1fzc_C Fibrin; blood coagulati 29.7 27 0.00091 32.8 2.6 46 33-78 2-47 (319)
150 4etp_A Kinesin-like protein KA 29.3 1.7E+02 0.0057 27.9 8.2 53 32-84 7-59 (403)
151 3vp9_A General transcriptional 29.2 1E+02 0.0034 23.9 5.3 35 112-146 48-86 (92)
152 2wwb_C SEC61BETA, protein tran 29.1 12 0.00041 29.3 0.1 14 260-273 78-91 (96)
153 2w83_C C-JUN-amino-terminal ki 29.0 1.8E+02 0.0062 21.7 8.8 31 108-138 45-75 (77)
154 2ww9_C Protein transport prote 28.7 18 0.0006 27.9 1.0 15 260-274 69-83 (87)
155 1x8y_A Lamin A/C; structural p 28.6 1.8E+02 0.0062 21.6 9.2 41 40-83 8-48 (86)
156 2b9c_A Striated-muscle alpha t 28.4 2.5E+02 0.0085 23.1 12.7 26 119-144 92-117 (147)
157 1fmh_A General control protein 28.2 1.1E+02 0.0037 18.8 4.4 28 52-79 4-31 (33)
158 1gd2_E Transcription factor PA 27.5 1.2E+02 0.0042 22.0 5.4 34 47-80 34-67 (70)
159 3tnu_A Keratin, type I cytoske 27.3 2.3E+02 0.008 22.4 12.3 29 55-83 30-58 (131)
160 1gk4_A Vimentin; intermediate 27.2 1.9E+02 0.0064 21.3 9.2 22 64-85 2-23 (84)
161 4h22_A Leucine-rich repeat fli 26.5 2.4E+02 0.008 22.2 9.5 52 33-84 28-79 (103)
162 3trt_A Vimentin; cytoskeleton, 26.5 1.8E+02 0.006 20.8 8.0 44 40-83 33-76 (77)
163 2r2v_A GCN4 leucine zipper; co 26.1 1.3E+02 0.0044 19.1 4.6 28 117-144 4-31 (34)
164 3oa7_A Head morphogenesis prot 26.0 1.3E+02 0.0045 26.4 6.1 48 29-79 27-74 (206)
165 1wle_A Seryl-tRNA synthetase; 25.9 2.4E+02 0.0082 27.8 8.8 57 28-84 77-144 (501)
166 1nkp_B MAX protein, MYC proto- 25.6 98 0.0034 22.6 4.7 29 118-146 51-79 (83)
167 2oqq_A Transcription factor HY 25.2 1.5E+02 0.0052 19.6 6.4 23 35-57 10-32 (42)
168 3he4_A Synzip6; heterodimeric 25.2 1.1E+02 0.0039 20.8 4.4 23 38-60 27-49 (56)
169 1d7m_A Cortexillin I; coiled-c 25.0 2.4E+02 0.0082 21.8 11.4 39 47-85 2-40 (101)
170 4e61_A Protein BIM1; EB1-like 25.0 1.5E+02 0.0052 23.4 5.9 33 50-82 5-37 (106)
171 4emc_A Monopolin complex subun 25.0 2.7E+02 0.0093 24.2 7.9 35 38-79 23-57 (190)
172 2dq0_A Seryl-tRNA synthetase; 24.4 1.6E+02 0.0053 28.6 7.1 57 28-84 38-97 (455)
173 4e61_A Protein BIM1; EB1-like 24.2 1.8E+02 0.0062 23.0 6.1 32 45-76 7-38 (106)
174 1go4_E MAD1 (mitotic arrest de 24.1 2.6E+02 0.0088 21.8 10.1 17 128-144 75-91 (100)
175 3k29_A Putative uncharacterize 24.0 2.4E+02 0.0081 24.1 7.2 42 34-75 84-125 (169)
176 1m1j_B Fibrinogen beta chain; 23.9 5.2E+02 0.018 25.3 12.4 20 113-132 99-118 (464)
177 2bni_A General control protein 23.9 1.4E+02 0.005 18.9 4.4 28 117-144 4-31 (34)
178 3m9b_A Proteasome-associated A 23.7 1.1E+02 0.0036 27.9 5.3 40 45-84 57-96 (251)
179 1g6u_A Domain swapped dimer; d 23.6 1.3E+02 0.0043 19.9 4.3 11 121-131 27-37 (48)
180 3ra3_A P1C; coiled coil domain 23.5 1.2E+02 0.0042 17.9 4.0 20 40-59 5-24 (28)
181 2dq0_A Seryl-tRNA synthetase; 23.4 1.9E+02 0.0065 28.0 7.5 37 110-146 72-108 (455)
182 1wt6_A Myotonin-protein kinase 23.3 2.4E+02 0.0083 21.2 9.2 60 14-84 14-73 (81)
183 3tnu_B Keratin, type II cytosk 22.9 2.8E+02 0.0096 21.9 13.7 28 56-83 29-56 (129)
184 1m1j_C Fibrinogen gamma chain; 22.8 5.1E+02 0.017 24.8 14.5 25 119-143 103-127 (409)
185 1ses_A Seryl-tRNA synthetase; 22.8 3.3E+02 0.011 26.0 9.0 38 109-146 66-103 (421)
186 3pmr_A Amyloid-like protein 1; 22.7 4E+02 0.014 23.6 10.0 79 98-189 16-95 (219)
187 1a93_B MAX protein, coiled coi 22.7 1.4E+02 0.0046 19.0 4.1 22 52-73 10-31 (34)
188 3d5a_X RF1, peptide chain rele 22.7 4.5E+02 0.015 24.8 9.7 40 35-74 3-47 (354)
189 1gk4_A Vimentin; intermediate 22.3 2.4E+02 0.0081 20.8 12.2 43 39-84 5-47 (84)
190 2hy6_A General control protein 22.0 1.6E+02 0.0054 18.7 4.6 28 117-144 4-31 (34)
191 3qne_A Seryl-tRNA synthetase, 21.3 2.5E+02 0.0085 27.7 7.9 36 111-146 75-110 (485)
192 3qne_A Seryl-tRNA synthetase, 21.2 2.3E+02 0.0077 28.0 7.6 57 28-84 40-99 (485)
193 1zme_C Proline utilization tra 20.7 1E+02 0.0036 21.1 3.8 21 125-145 48-68 (70)
194 1nlw_A MAD protein, MAX dimeri 20.5 1.4E+02 0.0049 21.9 4.7 27 118-144 51-77 (80)
195 4emc_A Monopolin complex subun 20.5 4E+02 0.014 23.1 8.1 8 219-226 134-141 (190)
196 3kin_B Kinesin heavy chain; mo 20.2 1.4E+02 0.0047 23.6 4.8 31 111-141 86-116 (117)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.46 E-value=0.043 Score=47.17 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 14 ETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVA 78 (304)
Q Consensus 14 ~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~ 78 (304)
.-|.+++.+.........+....+..++....++...+..++..+......+..+...+..+...
T Consensus 6 ~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (284)
T 1c1g_A 6 KKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEK 70 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544444444444444444444444444444444444444444444443333333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.32 E-value=0.064 Score=46.05 Aligned_cols=64 Identities=13% Similarity=0.091 Sum_probs=26.0
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 19 FELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 19 ~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l 82 (304)
+..+.........++...+..++.....+...+..+...+.....++..+...+..++..+..+
T Consensus 25 l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (284)
T 1c1g_A 25 AEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASL 88 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444444444444444444444444444444444444333
No 3
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.32 E-value=0.033 Score=49.07 Aligned_cols=157 Identities=15% Similarity=0.159 Sum_probs=104.2
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcch
Q 022021 19 FELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLE----METNQVAELRQQTELKEVAHEELSQRNSNTHQTGI 94 (304)
Q Consensus 19 ~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~----~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~ 94 (304)
.+.|....+..=.++..+...++.+..++..+=..++..++ ....+...|+.++..|..++++++.+.......
T Consensus 8 ~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e-- 85 (189)
T 2v71_A 8 LKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ-- 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34555566666667777888888888887777665555544 456677888888999999999888652221110
Q ss_pred hhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 95 YLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEA 174 (304)
Q Consensus 95 ~~~~i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEs 174 (304)
. .++ ...+..|++.+...+..|...++++++.-..|.+..-..+....++|.+|+.. |.+=+.||+
T Consensus 86 ----~-~~~-----~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~a----iEr~alLE~ 151 (189)
T 2v71_A 86 ----S-YKQ-----VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQA----IERNAFLES 151 (189)
T ss_dssp ----H-HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred ----H-HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHH
Confidence 0 011 33456677777788888888888888888877777666566789999999555 455555665
Q ss_pred hhhhhHHHHHHHHHHHh
Q 022021 175 LSSEKATLAFRIEAVSR 191 (304)
Q Consensus 175 l~sEk~al~~qLErl~~ 191 (304)
=..||..|...+.|+.-
T Consensus 152 El~EKe~l~~~~QRLkd 168 (189)
T 2v71_A 152 ELDEKESLLVSVQRLKD 168 (189)
T ss_dssp HHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55578888777777754
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.23 E-value=0.094 Score=47.54 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcch
Q 022021 15 TMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGI 94 (304)
Q Consensus 15 ~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~ 94 (304)
-++.+..+...-...+...-..+..|+.+...+...+...+..+++...++..+...++.........+.++....
T Consensus 12 ~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~---- 87 (256)
T 3na7_A 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK---- 87 (256)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS----
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----
Confidence 3456666666666666666666666666666666666666666666666555555555555555555554432221
Q ss_pred hhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 95 YLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 95 ~~~~i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
..-|.+.+..|+.+++.++..+++++..+...|+.++..+.
T Consensus 88 ----------~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~ 128 (256)
T 3na7_A 88 ----------SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQE 128 (256)
T ss_dssp ----------SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11234555666666666777777776666666666655543
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.57 E-value=0.2 Score=45.37 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022021 114 AEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEK 179 (304)
Q Consensus 114 ~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk 179 (304)
.||..+..++..++.++..++.+|..+-..+.........++.++..+...|-.+++.++.-..+.
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~ 155 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNI 155 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777777777777777777776666444556666667677777766666666555443
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.51 E-value=0.0046 Score=67.41 Aligned_cols=21 Identities=24% Similarity=0.088 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022021 32 EALQLLAKLETANADLARALA 52 (304)
Q Consensus 32 ~a~~R~~~Le~~n~~la~ala 52 (304)
++..++..|+.+..++...+.
T Consensus 882 ele~~l~~Le~e~~~l~~~L~ 902 (1184)
T 1i84_S 882 ELEQKHTQLCEEKNLLQEKLQ 902 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444333333
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.93 E-value=0.048 Score=59.14 Aligned_cols=123 Identities=13% Similarity=0.120 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHh--hhchhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 66 AELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAA--SKGVEFEREILEA---EYTFIADKIIQLEDKAKKLEGNIEMT 140 (304)
Q Consensus 66 ~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t--~~~~e~E~e~~r~---El~~l~~~~~~Le~~l~~~e~eI~~l 140 (304)
..+...+..||+.+.+|+.++.........+..-+. ....+.|.+.++. ++...+.++..++.+++.++++|+.+
T Consensus 917 ~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l 996 (1080)
T 2dfs_A 917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKL 996 (1080)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777777665443322211111000 0111233333322 23334445556667777777777777
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 022021 141 RKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 191 (304)
Q Consensus 141 r~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~ 191 (304)
+.++..-....+.+|.++.++.+.| |..+..|..|++-|+-|++.++.
T Consensus 997 ~~~~~~~~ke~~~lee~~~~~~~~L---~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 997 RKELHQTQTEKKTIEEWADKYKHET---EQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777664445566777777777644 46678888888888888888774
No 8
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.54 E-value=1 Score=38.79 Aligned_cols=121 Identities=14% Similarity=0.276 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHHHHHHH
Q 022021 38 AKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYT 117 (304)
Q Consensus 38 ~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~El~ 117 (304)
++++-.++++.++++..+..+-+...++..|...-..|+.++..|+.. .+.|+ ...+
T Consensus 30 ~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~-------------------L~qEr----~~r~ 86 (168)
T 3o0z_A 30 VRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAI-------------------LEAER----RDRG 86 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHH----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHH----HHHH
Confidence 456677888888888888888888888888888888888888887643 11122 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH----HHHHHHHhhH
Q 022021 118 FIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLA----FRIEAVSRLL 193 (304)
Q Consensus 118 ~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~----~qLErl~~~~ 193 (304)
...+.+.+|+.++..+..++..++..... ..-|+| .|+|. +-.+.-+++++. |.|-.+++.+
T Consensus 87 q~se~~~elq~ri~~L~~El~~~k~~~~k-----~~~e~r--~L~Ek-------l~~lEKe~a~~eid~~~eLKalQ~~~ 152 (168)
T 3o0z_A 87 HDSEMIGDLQARITSLQEEVKHLKHNLEK-----VEGERK--EAQDM-------LNHSEKEKNNLEIDLNYKLKSLQQRL 152 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH--HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH--HHHHH-------HHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455666777777777777766654433 222221 22222 334445566666 6677776655
Q ss_pred hh
Q 022021 194 DE 195 (304)
Q Consensus 194 ~~ 195 (304)
+.
T Consensus 153 eq 154 (168)
T 3o0z_A 153 EQ 154 (168)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 9
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=95.50 E-value=0.14 Score=41.47 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 64 QVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE 143 (304)
Q Consensus 64 ~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~ 143 (304)
+...|+.++..|..++++++.+........ -...-.+..|+..+.+....+...++++++.-..|.++
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~------------~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQS------------YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 456677777888888887776522211110 01133455677777788888888888888888877777
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 022021 144 IEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAF 184 (304)
Q Consensus 144 l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~ 184 (304)
--..+.+..++|.+| +.-|.+-+-||+=..||..|..
T Consensus 72 ~R~t~~SLeD~E~k~----n~aiErnalLE~El~EKe~L~~ 108 (111)
T 2v66_B 72 KRATIVSLEDFEQRL----NQAIERNAFLESELDEKESLLV 108 (111)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 655566789999999 5566777777777777766553
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.25 E-value=2.7 Score=50.48 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEA 188 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLEr 188 (304)
.+.+.+++...++++...+++++.+++.|+.|+.+..........++.........|-.=..-+.+|.+|+.-|.-+.+.
T Consensus 2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~ 2095 (3245)
T 3vkg_A 2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSEN 2095 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Confidence 34445566666667777777777777777777777766444556667777777777777777799999999888888777
Q ss_pred HHhhHhh
Q 022021 189 VSRLLDE 195 (304)
Q Consensus 189 l~~~~~~ 195 (304)
+......
T Consensus 2096 l~~~~~~ 2102 (3245)
T 3vkg_A 2096 FNTQMST 2102 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7654443
No 11
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.11 E-value=0.22 Score=43.87 Aligned_cols=55 Identities=20% Similarity=0.228 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 30 RMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 30 r~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
+.+.-.=-.++.....+..+.+..+|..+.........+...+-.||...++|.+
T Consensus 69 ~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr 123 (189)
T 2v71_A 69 KYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 123 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3333333345555555555666666666666666666666666666666665554
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.07 E-value=9.3 Score=46.08 Aligned_cols=33 Identities=21% Similarity=0.093 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 022021 152 IELKRRLGQLTDHLIQKQAQVEALSSEKATLAF 184 (304)
Q Consensus 152 ~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~ 184 (304)
..+|+.+....+.|-.||.+|..+....+.|.-
T Consensus 2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~ 2049 (3245)
T 3vkg_A 2017 EQLENAANELKLKQDEIVATITALEKSIATYKE 2049 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333333
No 13
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=92.89 E-value=3.1 Score=34.88 Aligned_cols=45 Identities=18% Similarity=0.336 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q 022021 121 DKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHL 165 (304)
Q Consensus 121 ~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~L 165 (304)
.++..|+++++.+-+.+..|...-...+.-+..||.+|+.||+.|
T Consensus 101 ~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~~kL 145 (147)
T 2b9c_A 101 GKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKKLV 145 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666665555555444333333445889999999888765
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.57 E-value=5.7 Score=39.03 Aligned_cols=81 Identities=17% Similarity=0.211 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEA 188 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLEr 188 (304)
.+.+++++..++++.+.++.+....+++++....+... +++....+=..+=.++.+++.+..|.+.+..++..
T Consensus 504 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 504 SDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETED-------LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhh-------HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666666655554444322 22333333333344556667777777777777777
Q ss_pred HHhhHhhc
Q 022021 189 VSRLLDEN 196 (304)
Q Consensus 189 l~~~~~~~ 196 (304)
+......+
T Consensus 577 l~~~~~~~ 584 (597)
T 3oja_B 577 LEAKKNRN 584 (597)
T ss_dssp HHHTTC--
T ss_pred HHHHhcCC
Confidence 66644333
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.42 E-value=2.2 Score=46.25 Aligned_cols=35 Identities=11% Similarity=0.266 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 38 AKLETANADLARALAAAQKKLEMETNQVAELRQQT 72 (304)
Q Consensus 38 ~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v 72 (304)
..+...+..|.+.|..+|+.+++...+...|.++.
T Consensus 917 ~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~ 951 (1080)
T 2dfs_A 917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKM 951 (1080)
T ss_dssp ----------------------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888888888888888776666665543
No 16
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=92.32 E-value=3.2 Score=33.42 Aligned_cols=68 Identities=21% Similarity=0.241 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 14 ETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEE 81 (304)
Q Consensus 14 ~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~ 81 (304)
-++..+..|...-..++.....++-+||..|.||.++--...-.|++...+....=+.+..||..+..
T Consensus 35 ~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 35 KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888888888999999988888888888888888887777777777777753
No 17
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=92.22 E-value=3.8 Score=32.94 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 43 ANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 43 ~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l 82 (304)
+..+|...|..++..|...+..++++++.++.++.+++.+
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I 64 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETV 64 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888899999999999999888888877653
No 18
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=91.62 E-value=3.1 Score=32.41 Aligned_cols=73 Identities=11% Similarity=0.288 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 022021 119 IADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 191 (304)
Q Consensus 119 l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~ 191 (304)
+-+++..|+.+-..+..+|..++.+...-...+..|=+.|+.+--.|+.-|..+.|+.+...--..+|+++..
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344445555555555555555555544334567788889999999999999999999999888889988864
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.61 E-value=2.6 Score=41.48 Aligned_cols=23 Identities=9% Similarity=0.238 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022021 39 KLETANADLARALAAAQKKLEME 61 (304)
Q Consensus 39 ~Le~~n~~la~ala~~q~~l~~~ 61 (304)
.|+.+.....+.+...+.++++.
T Consensus 467 ~l~~~~~~~~~~l~~~~~~i~~~ 489 (597)
T 3oja_B 467 QLTNEQIQQEQLLQGLHAEIDTN 489 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444444444444444444443
No 20
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=90.18 E-value=6.3 Score=31.95 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=36.1
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 19 FELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 19 ~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
+..-+..--..|.+.-...+.|..+..+|...|...+..+.+....+..|...-..|+..+..+..+
T Consensus 25 lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~r 91 (129)
T 2fxo_A 25 LKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKR 91 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445555555555566666666666666655555555555555555545555555555443
No 21
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.97 E-value=8.2 Score=32.73 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 022021 152 IELKRRLGQLTDHLIQKQAQVEALSSEKATL 182 (304)
Q Consensus 152 ~elEkRl~~LTe~Li~KQtqlEsl~sEk~al 182 (304)
..+|+|...|-.+|-.|.+.|+++......|
T Consensus 111 ~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~L 141 (154)
T 2ocy_A 111 YAIEILNKRLTEQLREKDTLLDTLTLQLKNL 141 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554443
No 22
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=89.03 E-value=6.8 Score=31.49 Aligned_cols=34 Identities=15% Similarity=0.481 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Q 022021 133 LEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLI 166 (304)
Q Consensus 133 ~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li 166 (304)
++.+|..+|+.+..-+-+..+||.++.+|++-|.
T Consensus 67 ~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~ 100 (119)
T 3ol1_A 67 AENTLQSFRQDVDNASLARLDLERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666776665545556777777666655443
No 23
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=88.73 E-value=3.2 Score=39.81 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 110 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 110 e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
+.+.++.+.-+.++.+||.++.+++.+|+.++.+++
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 432 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556777888888888887777777664
No 24
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.32 E-value=8 Score=30.42 Aligned_cols=53 Identities=9% Similarity=0.120 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 32 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 32 ~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
.+-.++..|+.++.+....+..++..+.+..............++..+++|-.
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788889999999999999999999999999999999999999998843
No 25
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=88.10 E-value=0.92 Score=36.00 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchh
Q 022021 49 RALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIY 95 (304)
Q Consensus 49 ~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~ 95 (304)
..+..+..+++....+...|++.++.||..+....-+ +++.+..+.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~-Gd~~~~~TK 57 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQ-GDYDQSRTK 57 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC-SCCCTTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccCCccCe
Confidence 3677888889999999999999999999998774322 566654443
No 26
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=87.42 E-value=8.6 Score=29.82 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHHHHHHHHHHH
Q 022021 42 TANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIAD 121 (304)
Q Consensus 42 ~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~El~~l~~ 121 (304)
.+.+++.+.+..++..+.....++..+.......+....+|..- .+-..---++.++.-.+..+.=...+......++.
T Consensus 6 ~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l-~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~ 84 (117)
T 2zqm_A 6 PQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESL-PDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEV 84 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888888888888888877777531 10000000122221111111113334444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 022021 122 KIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 122 ~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
.+..|+.++..++.++..++..+
T Consensus 85 ~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 85 RLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666555554
No 27
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.31 E-value=7.8 Score=32.06 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 112 LEAEYTFIADKIIQLEDKAKKLEGNI 137 (304)
Q Consensus 112 ~r~El~~l~~~~~~Le~~l~~~e~eI 137 (304)
+++|+..+.+++..|+.++.+++.+.
T Consensus 108 ~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 108 SAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666655443
No 28
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=86.40 E-value=9.4 Score=29.18 Aligned_cols=99 Identities=12% Similarity=0.078 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 022021 45 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKII 124 (304)
Q Consensus 45 ~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~El~~l~~~~~ 124 (304)
++..+.+..++..+.....+...+.......+.....|..- .+-..---++.++.-.+..+.=...+......++.++.
T Consensus 4 Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l-~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~ 82 (107)
T 1fxk_A 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRA-ADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREK 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888888777777777777531 11000000122221122111113344444555566667
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 022021 125 QLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 125 ~Le~~l~~~e~eI~~lr~~l 144 (304)
.|+.++..++.++..++..+
T Consensus 83 ~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 83 TIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777666555
No 29
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.28 E-value=14 Score=31.22 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 022021 125 QLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 125 ~Le~~l~~~e~eI~~lr~~l 144 (304)
..|....++++|++.|...+
T Consensus 76 ~aE~~~~~ie~ElEeLTasL 95 (154)
T 2ocy_A 76 KAEEEADKLNKEVEDLTASL 95 (154)
T ss_dssp HHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 30
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=85.63 E-value=11 Score=29.13 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 57 KLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGN 136 (304)
Q Consensus 57 ~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~e 136 (304)
.+..=-.+|..|+++|..||..+..++.+. .+.+.++ -+.+..-+|..+..+......++-++..+..+
T Consensus 17 RlAsyIdKVR~LEqqN~~Le~~i~~l~~~~------~~~~~~~-----ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~ 85 (93)
T 3s4r_A 17 RFANLIDKVRFLEQQNKILLAELEQLKGQG------KSRLGDL-----YEEEMRELRRQVDQLTNDKARVEVERDNLAED 85 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------CCCcHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445678888888888888888776540 1112222 23345556666666667777788888888888
Q ss_pred HHHHHHH
Q 022021 137 IEMTRKE 143 (304)
Q Consensus 137 I~~lr~~ 143 (304)
+..+|..
T Consensus 86 ~~~~k~K 92 (93)
T 3s4r_A 86 IMRLREK 92 (93)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 8877754
No 31
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=85.50 E-value=17 Score=31.26 Aligned_cols=30 Identities=10% Similarity=0.054 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIE 138 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~ 138 (304)
.++.+.=++.....+..|++++..++.+..
T Consensus 106 l~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 106 VKHLKHNLEKVEGERKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443344444445555555555554443
No 32
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=85.04 E-value=10 Score=29.41 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC-cchhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHH
Q 022021 48 ARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ-TGIYLKRLAASKGVEFEREILEAEYTFIADKIIQL 126 (304)
Q Consensus 48 a~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~-~~~~~~~i~t~~~~e~E~e~~r~El~~l~~~~~~L 126 (304)
.+.+..+..++.........+..++..++..+..+... ++.=| =++++.+- .+ ....+....++..+..++..+
T Consensus 9 ~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~-g~~CPvCgs~l~~~--~~--~~~i~~~~~~l~~l~~~i~~l 83 (112)
T 1l8d_A 9 ETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA-KGKCPVCGRELTDE--HR--EELLSKYHLDLNNSKNTLAKL 83 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-SEECTTTCCEECHH--HH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCCcCCHH--HH--HHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555555554321 11111 01111110 00 001233344555555566666
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 022021 127 EDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 127 e~~l~~~e~eI~~lr~~l~ 145 (304)
..++..++.++..++.++.
T Consensus 84 ~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 84 IDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666665555543
No 33
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=84.96 E-value=3.4 Score=28.81 Aligned_cols=47 Identities=23% Similarity=0.264 Sum_probs=18.5
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 26 HNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTEL 74 (304)
Q Consensus 26 H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~ 74 (304)
|..|+. -.|+..|+.++..|++.-..+..-|.+...++..|++.++.
T Consensus 2 ~~~~~~--~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 2 HAPTRS--ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp -----C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 34444444444444444444444444444444444444433
No 34
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.65 E-value=11 Score=37.75 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 110 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 110 e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
..+|.++...-..++.||.-|+++..+|++|..+|
T Consensus 120 qyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 120 EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555544566677777777777777777777
No 35
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=84.15 E-value=15 Score=29.65 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 116 YTFIADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 116 l~~l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
+...++.+..|..+-++++.+|+.|+.++.
T Consensus 92 leeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 92 LEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666677777777777777776663
No 36
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=82.75 E-value=17 Score=29.11 Aligned_cols=8 Identities=13% Similarity=0.256 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 022021 136 NIEMTRKE 143 (304)
Q Consensus 136 eI~~lr~~ 143 (304)
||..|+.+
T Consensus 109 El~eLq~q 116 (119)
T 3ol1_A 109 EIQELQAQ 116 (119)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHHH
Confidence 44444433
No 37
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=82.63 E-value=14 Score=28.09 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLE 134 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e 134 (304)
++.+..|...+.++...++++++.+-
T Consensus 50 ~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 50 REELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555544443
No 38
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=82.26 E-value=8.4 Score=29.29 Aligned_cols=51 Identities=18% Similarity=0.280 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 35 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 35 ~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
.|++.|+........++..++..++....+++.|+-+++.+..++..++++
T Consensus 6 ~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 6 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 466666655555667788888889999999999999999988888888754
No 39
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=81.44 E-value=1.6 Score=32.86 Aligned_cols=26 Identities=12% Similarity=0.291 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 119 IADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 119 l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
+++++.+||.++.-++..|+.|-..+
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v 37 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEAL 37 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777776666665554333
No 40
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=81.01 E-value=23 Score=29.48 Aligned_cols=39 Identities=28% Similarity=0.351 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHhh
Q 022021 157 RLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDE 195 (304)
Q Consensus 157 Rl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~~~~~ 195 (304)
.|+.|---|-.|-+++|+|....-.|+..||.-.-...+
T Consensus 99 KLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E 137 (167)
T 4gkw_A 99 KLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAE 137 (167)
T ss_dssp HTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888999999999999999999999875443333
No 41
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=80.78 E-value=4.9 Score=30.49 Aligned_cols=45 Identities=31% Similarity=0.354 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 30 RMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTEL 74 (304)
Q Consensus 30 r~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~ 74 (304)
+..+..|+..++.+|.+|...+..++..+++.+.+-..++..+..
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~ 52 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGR 52 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555778999999999999999999999999987666555544433
No 42
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=80.44 E-value=15 Score=27.91 Aligned_cols=34 Identities=15% Similarity=0.501 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q 022021 132 KLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHL 165 (304)
Q Consensus 132 ~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~L 165 (304)
.++.+|..||+.+..-+-+..+||.++.+|++-|
T Consensus 46 ~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 46 EAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888777765666788888876666554
No 43
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=80.29 E-value=12 Score=27.91 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 32 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTE 73 (304)
Q Consensus 32 ~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~ 73 (304)
.+..|+..++.+|.+|...+..++..+++.+.+-..++..+.
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk 45 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999998766555544433
No 44
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=80.15 E-value=26 Score=29.60 Aligned_cols=53 Identities=21% Similarity=0.176 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 33 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 33 a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
+-.|....+....+|...|..+-+++......-....++-...+..+..|..+
T Consensus 33 aEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~k 85 (155)
T 2efr_A 33 AEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDK 85 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45566666666667777777776776666666666666666666666666544
No 45
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=78.21 E-value=25 Score=28.20 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 39 KLETANADLARALAAAQKKLEMETNQVAELRQ 70 (304)
Q Consensus 39 ~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q 70 (304)
.|.+......++|+..+..+++.+.+++....
T Consensus 28 ~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 28 DLRQQLQQAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555566666666666555555444
No 46
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=77.51 E-value=23 Score=27.50 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022021 30 RMEALQLLAKLETANADLAR 49 (304)
Q Consensus 30 r~~a~~R~~~Le~~n~~la~ 49 (304)
+..|..|...++...-++..
T Consensus 18 ~e~a~drae~~e~~~k~~e~ 37 (101)
T 3u1c_A 18 KENALDRAEQAEADKKAAEE 37 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333333
No 47
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.59 E-value=17 Score=28.59 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022021 152 IELKRRLGQLTDHLIQKQ 169 (304)
Q Consensus 152 ~elEkRl~~LTe~Li~KQ 169 (304)
..+|+|..+|-.+|-.|.
T Consensus 79 ~~~e~kn~~L~~qL~d~d 96 (97)
T 2eqb_B 79 YAIEILNKRLTEQLREKD 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 445555555555555443
No 48
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=76.21 E-value=12 Score=28.39 Aligned_cols=55 Identities=13% Similarity=0.206 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 122 KIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSS 177 (304)
Q Consensus 122 ~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~s 177 (304)
++..|+.+|.+++.+|..+..+|..|.-...+++ ++..|+..|-..+..|+.+..
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~-~~~~l~~~l~~~e~eLe~~~e 77 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHE-QTQKVLADMAAAEQELEQAFE 77 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666667777777888887653222232 455666666666666666553
No 49
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=75.59 E-value=4.9 Score=40.55 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 30 RMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 30 r~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l 82 (304)
|++|--...+|+.....+......++..|......+..|.++....+..-..|
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l 382 (575)
T 2i1j_A 330 RERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEEL 382 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444433
No 50
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=74.56 E-value=28 Score=27.01 Aligned_cols=17 Identities=12% Similarity=0.155 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHhhh
Q 022021 69 RQQTELKEVAHEELSQR 85 (304)
Q Consensus 69 ~q~v~~lE~~l~~l~~~ 85 (304)
.+....+|.++.+|+++
T Consensus 36 e~~~~~~E~Ei~sL~kk 52 (101)
T 3u1c_A 36 EERSKQLEDDIVQLEKQ 52 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 33333444444444443
No 51
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=73.76 E-value=17 Score=27.19 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 022021 39 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 90 (304)
Q Consensus 39 ~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~ 90 (304)
.++....+|+..++=.+.-+++.+..+...+..+..|...+..|..++....
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555566666666677777777777777777777777766544433
No 52
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=73.15 E-value=16 Score=28.05 Aligned_cols=33 Identities=12% Similarity=0.319 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 022021 117 TFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTE 149 (304)
Q Consensus 117 ~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~ 149 (304)
+.++.++..|+++...++++|+.++.+++++.+
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~ 36 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDA 36 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 456688889999999999999999999987654
No 53
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=72.92 E-value=33 Score=33.28 Aligned_cols=91 Identities=16% Similarity=0.084 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcc-hhhhHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 022021 46 DLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTG-IYLKRLAASKGVEFEREILEAEYTFIADKII 124 (304)
Q Consensus 46 ~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~-~~~~~i~t~~~~e~E~e~~r~El~~l~~~~~ 124 (304)
+++..|...|+.+...-.+++.+-++++.+......|..-+.+..... .+....+ ..+ -+-.+.|.+++.
T Consensus 24 ~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~--------e~~-tq~skkml~~~~ 94 (409)
T 1m1j_C 24 GIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSI--------EQL-TQKSKKIIEEII 94 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCH--------HHH-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCch--------hhH-HHHHHHHHHHHH
Confidence 566777778887777777776666666666666655554322221111 0100000 000 112223445666
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 022021 125 QLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 125 ~Le~~l~~~e~eI~~lr~~l~ 145 (304)
.||..+...+..|..|+..+.
T Consensus 95 ~~e~~~~~~~~~i~~l~~~~~ 115 (409)
T 1m1j_C 95 RYENTILAHENTIQQLTDMHI 115 (409)
T ss_dssp HTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHH
Confidence 666666666666666665554
No 54
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=72.49 E-value=11 Score=26.91 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 112 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE 143 (304)
Q Consensus 112 ~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~ 143 (304)
+..+...++.+|..|+.++..++.||..|+.-
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666666543
No 55
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=72.13 E-value=29 Score=26.16 Aligned_cols=28 Identities=32% Similarity=0.290 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 54 AQKKLEMETNQVAELRQQTELKEVAHEE 81 (304)
Q Consensus 54 ~q~~l~~~~~~~~~l~q~v~~lE~~l~~ 81 (304)
+..++++...+-..|+..|..++.++++
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~ 38 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEE 38 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555554
No 56
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=71.86 E-value=30 Score=26.98 Aligned_cols=38 Identities=21% Similarity=0.400 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 45 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 45 ~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l 82 (304)
.+|...|..++.-|...+..++++++.+..++.+++.+
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i 42 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETV 42 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777777777777666553
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=71.11 E-value=73 Score=30.34 Aligned_cols=34 Identities=12% Similarity=0.081 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 106 EFEREILEAEYTFIADKIIQLEDKAKKLEGNIEM 139 (304)
Q Consensus 106 e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~ 139 (304)
+.|+++++++...+.+++..++++-.+++.+|..
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (487)
T 3oja_A 427 QSVQNNAIRDWDMYQHKETQLAEENARLKKLNGE 460 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhh
Confidence 3444455544444444444444444444433333
No 58
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=70.80 E-value=38 Score=34.20 Aligned_cols=131 Identities=13% Similarity=0.151 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 13 METMDAFELEKQRHN-------NTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 13 ~~~~~a~~~E~~~H~-------~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
+..++.+..++.... ..-.+++.-....+...-..-.+|..-++.+++...+.+.++.+.+.|+.....+++.
T Consensus 437 ~~~~~~~~~~Y~~~~~kg~~~~~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~ 516 (592)
T 1f5n_A 437 VQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQM 516 (592)
T ss_dssp HHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554443 2223343333333333333334455667777777777777777777777666665543
Q ss_pred cccCCC-cchhhhHHHhhhchhHHHHHHHHHHHHH-HHHHH--------HHHHHHHHHHHHHHHHHHHhc
Q 022021 86 NSNTHQ-TGIYLKRLAASKGVEFEREILEAEYTFI-ADKII--------QLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 86 ~~~~~~-~~~~~~~i~t~~~~e~E~e~~r~El~~l-~~~~~--------~Le~~l~~~e~eI~~lr~~l~ 145 (304)
+..-.. ....+.++. ...|.|+..+.+|...+ +.++. -++.+.+.+.++|+.|+++..
T Consensus 517 ~~~~~~~~~e~~~ql~--~kme~~~~~~~~e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~~~ 584 (592)
T 1f5n_A 517 MEQKERSYQEHLKQLT--EKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMR 584 (592)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 211110 001123331 23455555555555432 22222 256677888888888888743
No 59
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=70.79 E-value=32 Score=26.08 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHHHHH
Q 022021 36 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAE 115 (304)
Q Consensus 36 R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~E 115 (304)
-+.+|+.....+-..|+-+|-++++.+.+-..|.+.+..+...-+.+ ..|.+.+++|
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L-----------------------~~en~qLk~E 63 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREEL-----------------------ERENNHLKEQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----------------------HHHHHHHHHH
Confidence 34455555555555555555444444444444444433333332222 2335566677
Q ss_pred HHHHHHHHHHHHHHH
Q 022021 116 YTFIADKIIQLEDKA 130 (304)
Q Consensus 116 l~~l~~~~~~Le~~l 130 (304)
...-.+++..|=.++
T Consensus 64 ~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 64 QNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777776665543
No 60
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.64 E-value=5.9 Score=32.92 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC--------CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 022021 125 QLEDKAKKLEGNIEMTRKEIED--------PTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKA 180 (304)
Q Consensus 125 ~Le~~l~~~e~eI~~lr~~l~~--------~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~ 180 (304)
..|.+..+++.|++.|...+=. -......+|+|...|-.+|-.|.+-|+++.....
T Consensus 64 ~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~ 127 (135)
T 2e7s_A 64 KAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLK 127 (135)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554411 1123567888888888888888887777654443
No 61
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=70.59 E-value=34 Score=26.34 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 16 MDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEE 81 (304)
Q Consensus 16 ~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~ 81 (304)
|++++.-.++=..-+..|..|...++...-++..........+...+.++..+...++..+..+..
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~ 69 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKE 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334445555555555555554444444444444444444444443333333333
No 62
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=70.52 E-value=40 Score=27.11 Aligned_cols=26 Identities=12% Similarity=-0.023 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 57 KLEMETNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 57 ~l~~~~~~~~~l~q~v~~lE~~l~~l 82 (304)
.++....++..++.+...||..+.++
T Consensus 46 ~iq~L~~el~~l~~~~~sLE~~l~e~ 71 (131)
T 3tnu_A 46 TMQNLEIELQSQLSMKASLENSLEET 71 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333333334444444444444433
No 63
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=69.81 E-value=43 Score=27.13 Aligned_cols=95 Identities=18% Similarity=0.181 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHH
Q 022021 32 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREI 111 (304)
Q Consensus 32 ~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~ 111 (304)
.-+-=+.+.+....=|...|...|..|-+..+++.--.+=|..|...+...+.+. .++ ..-
T Consensus 15 dGLrAq~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~--------------q~~-----vqe 75 (121)
T 3mq7_A 15 DGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG--------------QKK-----VEE 75 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH-----HHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH-----HHH
Confidence 3344445555566666677777777777777777666666666666665543330 011 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 112 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 112 ~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
++.|+..+.++++....++.++..+++.+...+.
T Consensus 76 LqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 76 LEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 4566666667766666666666666665555553
No 64
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.18 E-value=43 Score=26.85 Aligned_cols=28 Identities=7% Similarity=0.136 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 55 QKKLEMETNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 55 q~~l~~~~~~~~~l~q~v~~lE~~l~~l 82 (304)
.+.++....++..++.+...||..+.+.
T Consensus 42 rr~iq~L~~el~~l~~~~~~LE~~l~e~ 69 (129)
T 3tnu_B 42 NRMIQRLRAEIDNVKKQCANLQNAIADA 69 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333334444444444444444444443
No 65
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=68.19 E-value=40 Score=26.22 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 022021 39 KLETANADLARALAAAQKKLEMETNQVAELR---QQTELKEVAHE 80 (304)
Q Consensus 39 ~Le~~n~~la~ala~~q~~l~~~~~~~~~l~---q~v~~lE~~l~ 80 (304)
.|.+......++|+.-|..+++.+.++...+ +.+..|+....
T Consensus 6 ~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~ 50 (94)
T 3jsv_C 6 DLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQAD 50 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777788888888888877777766 34444444433
No 66
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=66.93 E-value=16 Score=27.14 Aligned_cols=35 Identities=20% Similarity=0.122 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 111 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 111 ~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
.-..|+...+..+.+|+.++...+.+|..|+.++.
T Consensus 30 ~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 30 EKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566777778889999999999999999998874
No 67
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=66.91 E-value=62 Score=30.72 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 115 EYTFIADKIIQLEDKAKKLEGNIEMTR 141 (304)
Q Consensus 115 El~~l~~~~~~Le~~l~~~e~eI~~lr 141 (304)
-+..++.++..|+.+++.++.+|..+|
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566677777777777788887776
No 68
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=66.10 E-value=16 Score=24.44 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 117 TFIADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 117 ~~l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
..++.++.+|+++++-++.|-++||+-+.
T Consensus 13 k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 13 KDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 35667888999999999999999997553
No 69
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=65.97 E-value=40 Score=25.31 Aligned_cols=63 Identities=16% Similarity=0.101 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 62 TNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLE 134 (304)
Q Consensus 62 ~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e 134 (304)
+.+++.+...++.||..+..|...+.++.--...... ...+-.++..+++++..+.++|-.++
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~----------~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQ----------TQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777777776666554311000000 11223445555566666666665544
No 70
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=65.21 E-value=14 Score=26.46 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
|.+-++.+..|+.++..|+.+...+..+|..|+.++.
T Consensus 25 R~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 25 RARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666777788888888888888888888887664
No 71
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=63.56 E-value=27 Score=24.00 Aligned_cols=38 Identities=26% Similarity=0.163 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
..++|+=+..+-.+++.|+..-.+.++||++|++-+.+
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 35667777888899999999999999999999876643
No 72
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=62.89 E-value=20 Score=25.10 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 110 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRK 142 (304)
Q Consensus 110 e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~ 142 (304)
++-++....+++++..|+.+...+..+|+.|+.
T Consensus 18 ~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 18 QKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333433344444444444444444444444333
No 73
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=62.81 E-value=27 Score=24.19 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 32 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELR 69 (304)
Q Consensus 32 ~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~ 69 (304)
++..++..|-..|..|+..|..+..+|...+.+++.|.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667788888888888888888888888888888763
No 74
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=62.28 E-value=45 Score=24.64 Aligned_cols=50 Identities=8% Similarity=0.048 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 33 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 33 a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l 82 (304)
+..|...++....+........+..+...+.++..+...++..+..+...
T Consensus 18 a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 18 ALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444333
No 75
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=62.22 E-value=21 Score=25.42 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
|..-+++.+.+++++..|+.+...+..+|+.|+.++
T Consensus 18 R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 18 RQKKRAEQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777777777776655
No 76
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=62.03 E-value=49 Score=25.05 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 52 AAAQKKLEMETNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 52 a~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l 82 (304)
...+++.++...++..|+-+|..+|+.=...
T Consensus 15 ee~~~~~E~L~qEi~~Lr~kv~elEnErlQy 45 (81)
T 3qh9_A 15 EEKQRKAEELLQELRHLKIKVEELENERNQY 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677778888888888888887765544
No 77
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=61.57 E-value=19 Score=25.02 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 107 FEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 107 ~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
.+-+.+++|.+.++.++..| .++++.++..+.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L-------~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAI-------VEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence 34556665554444444444 555555555554
No 78
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=60.63 E-value=52 Score=24.82 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 105 VEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTR 141 (304)
Q Consensus 105 ~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr 141 (304)
+|.+.-.+|+.++...-.-.+||.++..+.+||.=||
T Consensus 47 ~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 47 AENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444333566666666666666555
No 79
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=59.48 E-value=24 Score=24.84 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
|++-++....+++++..|+.+...+..+|..|+.++..
T Consensus 17 R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 17 RKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666666666666666666666665543
No 80
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=58.25 E-value=66 Score=25.30 Aligned_cols=40 Identities=28% Similarity=0.338 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 44 NADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 44 n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
|.+|-+..+.+.+.|...+.-..++......|+..+..++
T Consensus 3 Hi~LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 3 HADLLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444455555555543
No 81
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=58.23 E-value=54 Score=24.26 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 118 FIADKIIQLEDKAKKLEGNIEMTR 141 (304)
Q Consensus 118 ~l~~~~~~Le~~l~~~e~eI~~lr 141 (304)
.++.+|..|+++++.+++.++.-+
T Consensus 11 ~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 11 EVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444433
No 82
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=56.96 E-value=7.8 Score=39.04 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Q 022021 124 IQLEDKAKKLEGNIEMTRKEIEDP 147 (304)
Q Consensus 124 ~~Le~~l~~~e~eI~~lr~~l~~~ 147 (304)
..|+.++...+..|.++..+...+
T Consensus 408 ~~l~~~~~~~~~~~~~~~~~~~~~ 431 (575)
T 2i1j_A 408 QKLEDEIRAKQEEVSRIQQEVELK 431 (575)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666665555443
No 83
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=56.93 E-value=43 Score=24.96 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 022021 66 AELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 66 ~~l~q~v~~lE~~l~~l~~~ 85 (304)
..++++|..||..++.|+-+
T Consensus 3 ~dlEEKv~~LE~sld~LQTr 22 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTR 22 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888765
No 84
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=56.78 E-value=46 Score=26.64 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 122 KIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 122 ~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
++..|...+...++.+..|+...+.
T Consensus 46 qV~~L~~~~q~sE~~L~~Lqq~fsq 70 (112)
T 1x79_B 46 QISALVLRAQASEILLEELQQGLSQ 70 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555556666666655544
No 85
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=56.24 E-value=28 Score=24.15 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
+.+-++-+..|+.++..|+.+...+..++..|+..+.
T Consensus 17 R~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 17 RRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555666777777777777777777777766554
No 86
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=56.09 E-value=40 Score=26.70 Aligned_cols=19 Identities=21% Similarity=0.029 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 022021 65 VAELRQQTELKEVAHEELS 83 (304)
Q Consensus 65 ~~~l~q~v~~lE~~l~~l~ 83 (304)
|+-|+..++.+|..+..++
T Consensus 32 VdlLKD~LEe~eE~~aql~ 50 (103)
T 4h22_A 32 VDTLKDMLLELEEQLAESR 50 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 87
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=55.94 E-value=45 Score=25.28 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 153 ELKRRLGQLTDHLIQKQAQVEALSS 177 (304)
Q Consensus 153 elEkRl~~LTe~Li~KQtqlEsl~s 177 (304)
+.|+|.+.|-..+-.++.+++.+.+
T Consensus 49 eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 49 EAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444444444444444444433
No 88
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=54.98 E-value=32 Score=25.49 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 110 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 110 e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
..++.||...+.++..|++.++-..+..+.|-.++=
T Consensus 21 ~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEii 56 (75)
T 3a7o_A 21 AILQKELKSKEQEIRRLKEVIALKNKNTERLNDELI 56 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHH
Confidence 345666666666666666666655555555555443
No 89
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=54.74 E-value=1.5e+02 Score=28.45 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 022021 123 IIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 123 ~~~Le~~l~~~e~eI~~lr~~l 144 (304)
+..|+.-++++..+|++|...|
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666677777776666
No 90
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.50 E-value=32 Score=28.46 Aligned_cols=84 Identities=10% Similarity=0.078 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHH
Q 022021 47 LARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQL 126 (304)
Q Consensus 47 la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~El~~l~~~~~~L 126 (304)
....+..++..+.+....-.........++..+++|-..+. ..++.|++... .++.. ++.++..|
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLF------eEAN~MVa~ar--~~~~~-------~e~r~~~L 108 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF------DEANNLVADAR--MEKYA-------IEILNKRL 108 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHH------HHHHHHHHHTT--HHHHH-------HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH--HHHHH-------HHHHHHHH
Confidence 33444455555555555555666666666777766633211 01366665441 12222 33566666
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 022021 127 EDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 127 e~~l~~~e~eI~~lr~~l~ 145 (304)
+.++...+.-|..+..++.
T Consensus 109 ~~ql~e~e~ll~~lq~QL~ 127 (135)
T 2e7s_A 109 TEQLREKDMLLDTLTLQLK 127 (135)
T ss_dssp HHTTTHHHHCC--------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666555554444444443
No 91
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=53.64 E-value=35 Score=21.11 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 111 ILEAEYTFIADKIIQLEDKAKKLEGNIE 138 (304)
Q Consensus 111 ~~r~El~~l~~~~~~Le~~l~~~e~eI~ 138 (304)
|+..|+..+..-++.|++.+.+++..++
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555566666677777777776655
No 92
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=53.18 E-value=27 Score=25.64 Aligned_cols=37 Identities=11% Similarity=0.202 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
|+|-++.+..|++++..|+.....+..+++.||.++.
T Consensus 24 ReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~ 60 (70)
T 1gd2_E 24 RKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVR 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555655666666666666665555666666665543
No 93
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=52.46 E-value=70 Score=30.80 Aligned_cols=47 Identities=15% Similarity=0.165 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CChhHHHHHHHHHHH
Q 022021 115 EYTFIADKIIQLEDKAKKLEGNIEMTRKEIED-------PTEVEIELKRRLGQL 161 (304)
Q Consensus 115 El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~-------~s~~~~elEkRl~~L 161 (304)
.|..|+.-+..+-.+++++|..|.--+.--+. ...+...||+..++|
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL 188 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQL 188 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHH
Confidence 56667777888888888888888554443332 111356666666553
No 94
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=52.21 E-value=1.6e+02 Score=27.91 Aligned_cols=19 Identities=5% Similarity=-0.186 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 022021 126 LEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 126 Le~~l~~~e~eI~~lr~~l 144 (304)
....++....+|+.++.+-
T Consensus 433 ~~~~~~~~~~~~~~~~~~~ 451 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEEN 451 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHh
Confidence 4444444555555555433
No 95
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=51.99 E-value=1.4e+02 Score=27.04 Aligned_cols=38 Identities=8% Similarity=0.081 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
.+..+.++...+.++..++.++...+.++..++.++..
T Consensus 117 ~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~ 154 (369)
T 4dk0_A 117 LNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGY 154 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445556666667777777777777777777776643
No 96
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=51.60 E-value=75 Score=23.92 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 022021 159 GQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 191 (304)
Q Consensus 159 ~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~ 191 (304)
..|..+|...+...+.|...+..|..+|..++.
T Consensus 52 ~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 52 NDLFGSMKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444666666677777777777777766654
No 97
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=51.24 E-value=59 Score=22.62 Aligned_cols=51 Identities=27% Similarity=0.363 Sum_probs=24.4
Q ss_pred HHHHHhHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 21 LEKQRHNNTR--MEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQ 71 (304)
Q Consensus 21 ~E~~~H~~Tr--~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~ 71 (304)
+|+|..++.| .---.+...|+.....|...-..++..+.....++..|++.
T Consensus 6 ~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 6 LERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554443 33334455555555555555555554444444444444443
No 98
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=50.82 E-value=42 Score=23.68 Aligned_cols=31 Identities=19% Similarity=0.081 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 111 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTR 141 (304)
Q Consensus 111 ~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr 141 (304)
+-++....|++++..|+.+...+..+|+.|+
T Consensus 20 rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 20 RRRELTDTLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343333344444444443333333333333
No 99
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=50.68 E-value=1e+02 Score=25.21 Aligned_cols=29 Identities=10% Similarity=-0.041 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 118 FIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 118 ~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
.+.+++..|+.++.....+|..|+.++.+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~ 100 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIA 100 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666667777777766644
No 100
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=50.40 E-value=44 Score=22.92 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 022021 160 QLTDHLIQKQAQVEA 174 (304)
Q Consensus 160 ~LTe~Li~KQtqlEs 174 (304)
..++....++.++++
T Consensus 44 ~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 44 TIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 333344444444433
No 101
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=50.00 E-value=96 Score=24.71 Aligned_cols=53 Identities=25% Similarity=0.267 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 29 TRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEE 81 (304)
Q Consensus 29 Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~ 81 (304)
-|.+.+.|..+.+.+...|...+..+++.+++...-..++...+..+..+...
T Consensus 5 e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~~~ 57 (125)
T 1joc_A 5 ERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQ 57 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 36678899999999999999999999999988877777776666555554443
No 102
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=48.31 E-value=46 Score=21.04 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 117 TFIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 117 ~~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
..+++++.+|=.+...++.+|.+|+.-+
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4577888888888888888888888654
No 103
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=47.89 E-value=32 Score=21.77 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 117 TFIADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 117 ~~l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
..+++++.+|=.+-..+++||.+|+.-+.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 35677888888888888888888886553
No 104
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=46.98 E-value=83 Score=23.12 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 38 AKLETANADLARALAAAQKKLEMETNQVA 66 (304)
Q Consensus 38 ~~Le~~n~~la~ala~~q~~l~~~~~~~~ 66 (304)
.+++.+...|.+.+..++..++....++.
T Consensus 37 ~~~E~ev~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 37 KQLEDELVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444433333333333
No 105
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=46.51 E-value=2.3e+02 Score=28.12 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=6.3
Q ss_pred chhhhHHhhhhc
Q 022021 290 GAVFSLENINNT 301 (304)
Q Consensus 290 ~a~~~~~~~~~~ 301 (304)
+|.+++.+||..
T Consensus 305 ~AllS~sSLN~~ 316 (497)
T 3iox_A 305 NALLSVASLNRE 316 (497)
T ss_dssp EEEEEECCCCBC
T ss_pred cceeeeeeccCC
Confidence 345555555553
No 106
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=46.01 E-value=23 Score=22.83 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 117 TFIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 117 ~~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
..+++++.+|-.+-..++.++.+|+.-+
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4577888888888888888888888655
No 107
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=45.94 E-value=67 Score=21.74 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 022021 67 ELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 67 ~l~q~v~~lE~~l~~l~~~ 85 (304)
.++++|..||..++.|+-+
T Consensus 2 dlEekv~~Le~~ld~LqTr 20 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTR 20 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 3567788888888877655
No 108
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=45.70 E-value=12 Score=34.09 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhcC----CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHhhcCC
Q 022021 133 LEGNIEMTRKEIED----PTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKP 198 (304)
Q Consensus 133 ~e~eI~~lr~~l~~----~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~~~~~~~~ 198 (304)
+++++..|+.++.+ |.+... |.||++|...+...+.+.+.|..+...++-++++++...+...+
T Consensus 29 ~~~e~~~l~~~~~~~~~~~~~~~~--~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 29 LRREAAVLREQLENAVGSHAPTRS--ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp -----------------------C--CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhhcccCcccchh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44555566666632 222112 77888999999999999998888888888888888876665544
No 109
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=45.62 E-value=96 Score=24.57 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhHhhHHHH
Q 022021 12 MMETMDAFELEKQRHNNTRMEA 33 (304)
Q Consensus 12 ~~~~~~a~~~E~~~H~~Tr~~a 33 (304)
||+.++-++.|+..|-.--+-|
T Consensus 33 tM~~ieeLQ~Ei~~~E~QL~iA 54 (107)
T 2k48_A 33 TMSTLQELQENITAHEQQLVTA 54 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888875443333
No 110
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=45.37 E-value=40 Score=25.17 Aligned_cols=34 Identities=12% Similarity=0.191 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 113 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 113 r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
......|+.+|..|..++..+..++..|+.-+.+
T Consensus 42 ~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777778888888888888888766654
No 111
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=43.78 E-value=1.1e+02 Score=23.39 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 022021 121 DKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 191 (304)
Q Consensus 121 ~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLErl~~ 191 (304)
++++.||.+-+.++.+|..++.. .++.....||.-|..| +.+++.+..+++.+..++..+..
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~--~~~~~~~~ye~~i~~L-------r~~i~~~~~ek~~l~~e~dnl~~ 84 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQ--GKSRLGDLYEEEMREL-------RRQVDQLTNDKARVEVERDNLAE 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc--cCCCcHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666667667666643 1233344566655444 45688888888888888877654
No 112
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=43.08 E-value=1.3e+02 Score=24.16 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 022021 30 RMEALQLLAKL 40 (304)
Q Consensus 30 r~~a~~R~~~L 40 (304)
+.++.-+...|
T Consensus 35 ~~E~q~~v~ql 45 (120)
T 3i00_A 35 KTESQRVVLQL 45 (120)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 113
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=42.72 E-value=1.5e+02 Score=24.89 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 48 ARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 48 a~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
...|..++..+.....++..+...+......++.++
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~ 102 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLN 102 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 114
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=42.17 E-value=1.2e+02 Score=27.10 Aligned_cols=35 Identities=9% Similarity=0.246 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 110 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 110 e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
+..+.++...+.++..++.++...+..+..++.++
T Consensus 117 ~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l 151 (341)
T 3fpp_A 117 DNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNL 151 (341)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444455555566666666666555555554
No 115
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.45 E-value=80 Score=30.16 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 121 DKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 121 ~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
+++..-+..-+++..+|+.++-.|
T Consensus 38 ~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 38 EILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCe
Confidence 444444444455556666655544
No 116
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=40.23 E-value=57 Score=21.00 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 117 TFIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 117 ~~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
..+++++.+|-.+...++.++.+||.-+
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4567788888888888888888887654
No 117
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=39.74 E-value=1.1e+02 Score=22.56 Aligned_cols=45 Identities=20% Similarity=0.202 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 022021 45 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 89 (304)
Q Consensus 45 ~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~ 89 (304)
.+|..+|..-..+|..+...+.++...+..++..+..|+..+.++
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555566666666666666666666554444
No 118
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=39.67 E-value=70 Score=20.30 Aligned_cols=28 Identities=14% Similarity=0.033 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 117 TFIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 117 ~~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
..+++++.+|=.+...++.++.+||.-+
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4566777777777778888888887644
No 119
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=39.40 E-value=64 Score=22.23 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 107 FEREILEAEYTFIADKIIQLEDKAK 131 (304)
Q Consensus 107 ~E~e~~r~El~~l~~~~~~Le~~l~ 131 (304)
.|.+-+++++..+.+++.+|..++.
T Consensus 26 ~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 26 LELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566677777777788877777654
No 120
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=39.37 E-value=1.2e+02 Score=22.96 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022021 49 RALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRN 86 (304)
Q Consensus 49 ~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~ 86 (304)
+.+..+...+++...++..|+.....++..+..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l 40 (112)
T 1l8d_A 3 KLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAI 40 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666666665543
No 121
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=39.29 E-value=1.2e+02 Score=30.60 Aligned_cols=14 Identities=7% Similarity=0.221 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHH
Q 022021 176 SSEKATLAFRIEAV 189 (304)
Q Consensus 176 ~sEk~al~~qLErl 189 (304)
-.|...+++-||+-
T Consensus 232 l~ei~Qm~mvLE~~ 245 (562)
T 3ghg_A 232 LTDMPQMRMELERP 245 (562)
T ss_dssp --------------
T ss_pred hhhhhcEEEEEEec
Confidence 45667777778775
No 122
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=38.25 E-value=75 Score=23.81 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022021 65 VAELRQQTELKEVAHEEL 82 (304)
Q Consensus 65 ~~~l~q~v~~lE~~l~~l 82 (304)
+..++.++..||+.+.++
T Consensus 5 ie~L~~q~~~Le~~l~e~ 22 (86)
T 1x8y_A 5 LSQLQCQLAAKEAKLRDL 22 (86)
T ss_dssp -------CTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 123
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=37.70 E-value=1.5e+02 Score=23.56 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 37 LAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 37 ~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
+.++...-.+|... ...+-++-..+|..|...+..-|..+.+|++.
T Consensus 22 L~k~~~~r~~Le~~---w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~ 67 (112)
T 1x79_B 22 LEKTMKDKQELEDF---IKQSSEDSSHQISALVLRAQASEILLEELQQG 67 (112)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444433 66777788888888888888888888888653
No 124
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=37.62 E-value=78 Score=20.11 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 117 TFIADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 117 ~~l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
+.+++++.+|=.+-..++.++.+||.-+.
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 45667777777777778888888876543
No 125
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=37.41 E-value=1.2e+02 Score=22.36 Aligned_cols=40 Identities=28% Similarity=0.396 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 46 DLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 46 ~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
.+...++.++..|..+..++..|++-+...--+.+.|++.
T Consensus 15 ~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDE 54 (75)
T 3a7o_A 15 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDE 54 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHH
Confidence 3445777888888888888888887776666666666543
No 126
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=36.35 E-value=81 Score=20.06 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 117 TFIADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 117 ~~l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
..+++++.+|=.+...+++|+.+|+.-+.
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 35677888888888888888888886543
No 127
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=36.21 E-value=1.4e+02 Score=26.76 Aligned_cols=78 Identities=13% Similarity=0.099 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEA 188 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLEr 188 (304)
.+..+.++..++..+...+.++...+.+.++.+.-.+...-+..+|+..- ..+...+.+++.+.......+.+|+.
T Consensus 71 ~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~----~~~~~~~a~l~~~~a~l~~a~a~l~~ 146 (341)
T 3fpp_A 71 IKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAA----TEMAVKQAQIGTIDAQIKRNQASLDT 146 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHHHH----HHHHHTHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666666666666666666666655554333445555522 23344555566555555555555554
Q ss_pred HH
Q 022021 189 VS 190 (304)
Q Consensus 189 l~ 190 (304)
++
T Consensus 147 a~ 148 (341)
T 3fpp_A 147 AK 148 (341)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 128
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=36.10 E-value=52 Score=24.00 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 115 EYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 115 El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
.+..-..++.+||..+.....+|+.||.++..
T Consensus 19 ~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 19 ILMLKEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344567788888888889999999988743
No 129
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=36.07 E-value=3.1e+02 Score=26.52 Aligned_cols=109 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC-CCcchhhhHHHhhhchhHHHHHHHHHHHH-HHHH
Q 022021 45 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT-HQTGIYLKRLAASKGVEFEREILEAEYTF-IADK 122 (304)
Q Consensus 45 ~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~-~~~~~~~~~i~t~~~~e~E~e~~r~El~~-l~~~ 122 (304)
..++.-|.+.|+.++..-.+++..-+.++..-.....+-.-|.+. .+...+..+.+..- .+++. |-++
T Consensus 23 Cgl~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~----------~q~Skkml~~ 92 (411)
T 3ghg_C 23 CGIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAA----------TLKSRKMLEE 92 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHH----------HHHHHHHHHH
T ss_pred chHHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhH----------HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 022021 123 IIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTD 163 (304)
Q Consensus 123 ~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe 163 (304)
+..++.-+......|..|+..+++.......|+..+.+|..
T Consensus 93 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 93 IMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 130
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=35.94 E-value=1.8e+02 Score=26.21 Aligned_cols=80 Identities=8% Similarity=0.018 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEA 188 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~LTe~Li~KQtqlEsl~sEk~al~~qLEr 188 (304)
....+.++..++.++...+.++...+.+.++++.-.+....+..+|+..- ..+..-+.+++.+......++.+|+.
T Consensus 72 l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~----~~~~~a~a~~~~~~~~l~~~~~~l~~ 147 (369)
T 4dk0_A 72 LNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAK----ATLNNAKAEMDVVQENIKQAEIEVNT 147 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666666666666666666655554333334444422 23334455566666666666666666
Q ss_pred HHhh
Q 022021 189 VSRL 192 (304)
Q Consensus 189 l~~~ 192 (304)
++..
T Consensus 148 a~~~ 151 (369)
T 4dk0_A 148 AETN 151 (369)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6543
No 131
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=35.59 E-value=1.1e+02 Score=22.89 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=31.7
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 23 KQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTE 73 (304)
Q Consensus 23 ~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~ 73 (304)
+++=+--|-...+|+-+|-.++..+...+..++........++.++++...
T Consensus 25 KNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 25 KNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666788888888888888888887777777777766666665543
No 132
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=34.53 E-value=61 Score=21.62 Aligned_cols=33 Identities=15% Similarity=0.364 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 33 ALQLLAKLETANADLARALAAAQKKLEMETNQV 65 (304)
Q Consensus 33 a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~ 65 (304)
+..=..++...+.++.+.|..++.+|+..+..+
T Consensus 7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 7 MYDMISDLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444456667777777777777777776665544
No 133
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=34.38 E-value=88 Score=19.74 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 117 TFIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 117 ~~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
..+++++.+|=.+-..++.++.+||.-+
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4566777777777777888888887544
No 134
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=33.88 E-value=1.3e+02 Score=24.36 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Q 022021 40 LETANADLARALAAAQKKLEMETNQVAEL---RQQTELKEVAHEELS 83 (304)
Q Consensus 40 Le~~n~~la~ala~~q~~l~~~~~~~~~l---~q~v~~lE~~l~~l~ 83 (304)
++.+...+...+..++..++........+ ..++...+..++.+.
T Consensus 7 ~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~ 53 (151)
T 2zdi_C 7 NNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLK 53 (151)
T ss_dssp STTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555556666666 555555555555553
No 135
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=33.77 E-value=84 Score=19.32 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022021 119 IADKIIQLEDKAKKLEGNIEMTR 141 (304)
Q Consensus 119 l~~~~~~Le~~l~~~e~eI~~lr 141 (304)
+.+++..|..++..+.=+|..|+
T Consensus 7 lkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555444
No 136
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=33.35 E-value=1.1e+02 Score=21.56 Aligned_cols=38 Identities=26% Similarity=0.167 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
..++|+=--++-.+++.|+..-.+.++||.+|+.-+.+
T Consensus 13 ~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 13 LLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566555567778899999999999999999987754
No 137
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=33.09 E-value=2.2e+02 Score=23.87 Aligned_cols=67 Identities=24% Similarity=0.378 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHH-HHHHHHHHHHHHHHHHHHhhh
Q 022021 110 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKR-RLGQLTDHLIQKQAQVEALSS 177 (304)
Q Consensus 110 e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEk-Rl~~LTe~Li~KQtqlEsl~s 177 (304)
+.+...+..+++++.+.+.+..-.+..+.+|...+..--+ ...-++ .|..+.+-|-+--..|.++.+
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd-~L~~~Kek~~~i~~eLd~tl~el~~~~~ 140 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLED-ELYAQKLKYKAISEEMKQLEDKVEELLS 140 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4455555566666655544443333333333333322111 111122 555555555544444444433
No 138
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=32.95 E-value=1.6e+02 Score=22.32 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 022021 35 QLLAKLETANADLA 48 (304)
Q Consensus 35 ~R~~~Le~~n~~la 48 (304)
.|...|+.+|..|-
T Consensus 43 ~r~~~Le~EN~~Lr 56 (87)
T 1hjb_A 43 HKVLELTAENERLQ 56 (87)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344443333
No 139
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=32.78 E-value=1.7e+02 Score=22.44 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 38 AKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 38 ~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
..|+..++.|.+.|..++..++. ++..++..+..+|..+..++
T Consensus 15 ~~Lq~~~~~LE~~l~e~E~~~~~---e~~~~q~~i~~lE~eL~~~r 57 (95)
T 3mov_A 15 FQGQKESRACLERIQELEDLLAK---EKDNSRRMLTDKEREMAEIR 57 (95)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666654443 34445555555555555543
No 140
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=32.45 E-value=1.6e+02 Score=22.20 Aligned_cols=55 Identities=29% Similarity=0.325 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022021 32 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRN 86 (304)
Q Consensus 32 ~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~ 86 (304)
..+.=+..|+-.-.++.+.=..++++|-..+.++..|+++++..+..+..|+.++
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4566677788888888888889999999999999999999999999988887653
No 141
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=32.23 E-value=70 Score=30.77 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 022021 107 FEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQL 161 (304)
Q Consensus 107 ~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~~s~~~~elEkRl~~L 161 (304)
.|++-++.|+..+.++..+++.+++.+..++..++.++..-...-..|.+.+..|
T Consensus 3 ~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 3 SMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 142
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=31.79 E-value=2.6e+02 Score=24.32 Aligned_cols=98 Identities=15% Similarity=0.120 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHH---HHHHHHHHHHHHHH
Q 022021 48 ARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFERE---ILEAEYTFIADKII 124 (304)
Q Consensus 48 a~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e---~~r~El~~l~~~~~ 124 (304)
...|++.++.|.....+-..|.++...|-..+++.+.==.+...++..+..++++.-.+.+.. .|-.--+.+-.+-.
T Consensus 86 s~RLaRvenaL~~~~~Er~sL~~K~~~L~~Q~EDAkeLKe~ldRRe~~V~~iL~~~L~~eql~DY~~fv~mKa~Ll~eqR 165 (190)
T 3thf_A 86 SERLAQTESSLETRQQERGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGLLAKNLSADMCADYDYFINMKAKLIADAR 165 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555554443310112222233455555554444432 22222223333445
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 022021 125 QLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 125 ~Le~~l~~~e~eI~~lr~~l~ 145 (304)
+|+++++--++.+..|+..+.
T Consensus 166 eLddkIklgeEQL~~L~~sL~ 186 (190)
T 3thf_A 166 DLAVRIKGSEEQLSSLSDALV 186 (190)
T ss_dssp HHHHHHHHHHHHHHHHTTC--
T ss_pred hHHHHHHhhHHHHHHHHHhhc
Confidence 777777777777776665543
No 143
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=31.42 E-value=51 Score=24.64 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 121 DKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 121 ~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
++|.+|+++...++.|-..||.-.+
T Consensus 22 e~I~EL~e~~~qLE~EN~~Lk~~as 46 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLLKTLAS 46 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8899999999999988888886554
No 144
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=31.41 E-value=55 Score=19.46 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022021 121 DKIIQLEDKAKKLEGNIEMT 140 (304)
Q Consensus 121 ~~~~~Le~~l~~~e~eI~~l 140 (304)
+++.+|..++..++=+|..|
T Consensus 7 qknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 7 QKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHh
Confidence 56666666666666555544
No 145
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=31.31 E-value=1.4e+02 Score=27.88 Aligned_cols=44 Identities=14% Similarity=0.078 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 35 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVA 78 (304)
Q Consensus 35 ~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~ 78 (304)
..+.+|+.........|..++..++....++.+|++++..++..
T Consensus 12 ~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 12 EEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555566665555555543
No 146
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=30.99 E-value=60 Score=30.42 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022021 119 IADKIIQLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 119 l~~~~~~Le~~l~~~e~eI~~lr~~l~ 145 (304)
|.+++..+|..+...+.+|..|+..+.
T Consensus 10 ~~~~~~~~e~~i~~~~~~i~~L~~~l~ 36 (323)
T 1lwu_C 10 ILEEVRILEQIGVSHDAQIQELSEMWR 36 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 334555555555555555555555444
No 147
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=30.82 E-value=1.3e+02 Score=23.57 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022021 121 DKIIQLEDKAKKLEGNIEMTRKE 143 (304)
Q Consensus 121 ~~~~~Le~~l~~~e~eI~~lr~~ 143 (304)
.++.+|+.++.++..+-+.|+.+
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444443
No 148
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=30.55 E-value=1.9e+02 Score=22.50 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 022021 42 TANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNS 87 (304)
Q Consensus 42 ~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~ 87 (304)
.+.+..-.-+-++...|+..+++--+.+.+++.|+..+..|++.+.
T Consensus 39 aQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lq 84 (99)
T 3ni0_A 39 TQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELE 84 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455556666666665555555556666666666655433
No 149
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=29.70 E-value=27 Score=32.79 Aligned_cols=46 Identities=13% Similarity=0.183 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 33 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVA 78 (304)
Q Consensus 33 a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~ 78 (304)
++.++..||.....+.+.+..++..++....++..|++++..|+..
T Consensus 2 ~~~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~ 47 (319)
T 1fzc_C 2 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 47 (319)
T ss_dssp --------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888888888888888877777653
No 150
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.32 E-value=1.7e+02 Score=27.90 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 32 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 32 ~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
+....+..|+.+..++...+..++..+.+...++.....+-.+|-+.+.+++.
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34456778888888889999999999999999888888888999999999985
No 151
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=29.19 E-value=1e+02 Score=23.86 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcC
Q 022021 112 LEAEYTFIADKIIQLEDKAKKL----EGNIEMTRKEIED 146 (304)
Q Consensus 112 ~r~El~~l~~~~~~Le~~l~~~----e~eI~~lr~~l~~ 146 (304)
+-+|+..+.+.+.+||..=.++ ++||.+||.++.+
T Consensus 48 Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 48 QLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666777777777664433 5788888888765
No 152
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=29.08 E-value=12 Score=29.35 Aligned_cols=14 Identities=29% Similarity=0.624 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q 022021 260 LWSLVYLVCLHLWV 273 (304)
Q Consensus 260 ~~~~~Y~v~LHl~V 273 (304)
++|++.+++||+|.
T Consensus 78 l~Fi~~Vi~Lhi~~ 91 (96)
T 2wwb_C 78 LLFIASVFMLHIWG 91 (96)
T ss_dssp HHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhh
Confidence 47888889999873
No 153
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=29.03 E-value=1.8e+02 Score=21.72 Aligned_cols=31 Identities=26% Similarity=0.569 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 108 EREILEAEYTFIADKIIQLEDKAKKLEGNIE 138 (304)
Q Consensus 108 E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~ 138 (304)
|++.++.|+.++.+-...++.+++.+++++.
T Consensus 45 E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 45 EKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4777777777777777777777777776554
No 154
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=28.71 E-value=18 Score=27.90 Aligned_cols=15 Identities=20% Similarity=0.281 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHH
Q 022021 260 LWSLVYLVCLHLWVI 274 (304)
Q Consensus 260 ~~~~~Y~v~LHl~V~ 274 (304)
+.|++.+++||+|-=
T Consensus 69 l~FIa~VilLHI~gK 83 (87)
T 2ww9_C 69 VGFIFSVIALHLLTK 83 (87)
T ss_dssp HHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhhh
Confidence 478888999999853
No 155
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=28.57 E-value=1.8e+02 Score=21.60 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 40 LETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 40 Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
|+..++.|.+.|+.++.... .++..++..+..+|..+..++
T Consensus 8 L~~q~~~Le~~l~e~E~~~~---~~l~~~q~~i~~lE~el~~~r 48 (86)
T 1x8y_A 8 LQCQLAAKEAKLRDLEDSLA---RERDTSRRLLAEKEREMAEMR 48 (86)
T ss_dssp ----CTTHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445554444332 234444444555555555443
No 156
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=28.42 E-value=2.5e+02 Score=23.11 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 119 IADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 119 l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
.+++....+.++..++.++..+-+.+
T Consensus 92 aeeRae~aE~k~~eLEeeL~~~~~nl 117 (147)
T 2b9c_A 92 AEERAELSEGKCAELEEELKTVTNNL 117 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333
No 157
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=28.22 E-value=1.1e+02 Score=18.84 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 52 AAAQKKLEMETNQVAELRQQTELKEVAH 79 (304)
Q Consensus 52 a~~q~~l~~~~~~~~~l~q~v~~lE~~l 79 (304)
+.++++.....++--.|.+.|..||+.|
T Consensus 4 aqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 3445555555556667777777777654
No 158
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=27.51 E-value=1.2e+02 Score=22.03 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 47 LARALAAAQKKLEMETNQVAELRQQTELKEVAHE 80 (304)
Q Consensus 47 la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~ 80 (304)
|...+..++...+....+...|+..+..|...+.
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444445555555555544443
No 159
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.29 E-value=2.3e+02 Score=22.44 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 55 QKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 55 q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
...+...+.++.+++..+..|+.++++++
T Consensus 30 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~ 58 (131)
T 3tnu_A 30 SELVQSGKSEISELRRTMQNLEIELQSQL 58 (131)
T ss_dssp -----------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555553
No 160
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=27.22 E-value=1.9e+02 Score=21.34 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 022021 64 QVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 64 ~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
++..++.++..||..+.++..+
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~ 23 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEEN 23 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666665443
No 161
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=26.51 E-value=2.4e+02 Score=22.21 Aligned_cols=52 Identities=12% Similarity=0.231 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 33 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 33 a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
.+==.-.|.-...++...++.++|++.++..+++.++-....|..++..++.
T Consensus 28 l~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~ 79 (103)
T 4h22_A 28 FMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKE 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334556777778888888888888888888888888888888887777764
No 162
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=26.48 E-value=1.8e+02 Score=20.77 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 40 LETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 40 Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
.....+++......-...+...+.++.+++-.+..|+.++++++
T Consensus 33 y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 33 YKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455566666666666677777788888888888888887764
No 163
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=26.08 E-value=1.3e+02 Score=19.09 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 117 TFIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 117 ~~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
..+++++.+|=.+...++.++.+++.-+
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4566777777777777777777777543
No 164
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=26.03 E-value=1.3e+02 Score=26.41 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 29 TRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAH 79 (304)
Q Consensus 29 Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l 79 (304)
.|.++ +.+||++.....++...++.+.++..++...|+..+.+|+.+.
T Consensus 27 ~~~~~---~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~ 74 (206)
T 3oa7_A 27 ERTEA---LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNT 74 (206)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCG
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCH
Confidence 34444 4578888888888888899999888888888888888777654
No 165
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=25.93 E-value=2.4e+02 Score=27.80 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 28 NTRMEALQLLAKLETANADLARALAAAQK-----------KLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 28 ~Tr~~a~~R~~~Le~~n~~la~ala~~q~-----------~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
..|.+...+...|+.+...+++.|....+ +.+...+++..++++++.++..+..+..
T Consensus 77 ~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~ 144 (501)
T 1wle_A 77 QELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEE 144 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777778888888888888876543 3445677778888888888777766665
No 166
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=25.59 E-value=98 Score=22.61 Aligned_cols=29 Identities=7% Similarity=0.194 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 118 FIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 118 ~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
.|++++..|+.++..+..++..|+.++..
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666543
No 167
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=25.24 E-value=1.5e+02 Score=19.63 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022021 35 QLLAKLETANADLARALAAAQKK 57 (304)
Q Consensus 35 ~R~~~Le~~n~~la~ala~~q~~ 57 (304)
.|..+|+..|++|...++.+|++
T Consensus 10 ~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 10 NRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555544
No 168
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=25.21 E-value=1.1e+02 Score=20.75 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022021 38 AKLETANADLARALAAAQKKLEM 60 (304)
Q Consensus 38 ~~Le~~n~~la~ala~~q~~l~~ 60 (304)
+.|+..|+.|.+-+++++..+..
T Consensus 27 arlendnanlekdianlekdian 49 (56)
T 3he4_A 27 ARLENDNANLEKDIANLEKDIAN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHHHHHHH
Confidence 34566677777777666665543
No 169
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=25.03 E-value=2.4e+02 Score=21.78 Aligned_cols=39 Identities=23% Similarity=0.237 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022021 47 LARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 85 (304)
Q Consensus 47 la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~ 85 (304)
+++.|+.+|..++..+.--++|-.+...|++.+.+++..
T Consensus 2 lan~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e 40 (101)
T 1d7m_A 2 MANRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESE 40 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888877766666666667777777777643
No 170
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.02 E-value=1.5e+02 Score=23.38 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 50 ALAAAQKKLEMETNQVAELRQQTELKEVAHEEL 82 (304)
Q Consensus 50 ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l 82 (304)
++.+++..+...+.++.+|.+++..++...+.+
T Consensus 5 s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~l 37 (106)
T 4e61_A 5 SLVAIQAELTKSQETIGSLNEEIEQYKGTVSTL 37 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666665555555544
No 171
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=24.98 E-value=2.7e+02 Score=24.16 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 38 AKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAH 79 (304)
Q Consensus 38 ~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l 79 (304)
++|..+|..|...|. .+..++..|+.+++.++++.
T Consensus 23 ~~L~~En~~L~~ql~-------~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 23 ANLVNENFVLSEKLD-------TKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhh
Confidence 345555555555444 34444444444444444443
No 172
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=24.42 E-value=1.6e+02 Score=28.64 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 28 NTRMEALQLLAKLETANADLARALAAAQKK---LEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 28 ~Tr~~a~~R~~~Le~~n~~la~ala~~q~~---l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
..|.+...+...|+.+...+++.|....++ .+...+++..++++++.++..+..+..
T Consensus 38 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (455)
T 2dq0_A 38 TEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKK 97 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888888888888865332 345566677777777777766666654
No 173
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=24.21 E-value=1.8e+02 Score=22.95 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 45 ADLARALAAAQKKLEMETNQVAELRQQTELKE 76 (304)
Q Consensus 45 ~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE 76 (304)
..+.+.|+..+.++.+.+.++..++..++-+|
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lE 38 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTVSTLE 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444
No 174
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=24.06 E-value=2.6e+02 Score=21.81 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 022021 128 DKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 128 ~~l~~~e~eI~~lr~~l 144 (304)
..+.++++||++||..+
T Consensus 75 ~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 75 EDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555555444
No 175
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=23.96 E-value=2.4e+02 Score=24.09 Aligned_cols=42 Identities=21% Similarity=0.193 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 34 LQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELK 75 (304)
Q Consensus 34 ~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~l 75 (304)
-.|++.++..-++....+..+++.|+.....+...++..++.
T Consensus 84 rErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKf 125 (169)
T 3k29_A 84 AIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKT 125 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666667777777777777777777776666666666
No 176
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=23.88 E-value=5.2e+02 Score=25.29 Aligned_cols=20 Identities=10% Similarity=0.282 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022021 113 EAEYTFIADKIIQLEDKAKK 132 (304)
Q Consensus 113 r~El~~l~~~~~~Le~~l~~ 132 (304)
+..+..|++.+.+++..-..
T Consensus 99 ~~~LqeLe~~l~~lsn~Ts~ 118 (464)
T 1m1j_B 99 KPVLRDLKDRVAKFSDTSTT 118 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhhhhhH
Confidence 34444555555544443333
No 177
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=23.87 E-value=1.4e+02 Score=18.87 Aligned_cols=28 Identities=18% Similarity=0.289 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 117 TFIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 117 ~~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
..+++++.+|=.+-..++.++.+||.-+
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 3566777777777777788888777543
No 178
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.71 E-value=1.1e+02 Score=27.86 Aligned_cols=40 Identities=18% Similarity=0.118 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 45 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 45 ~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
.++...+..++.+.+.....+..+++++..|+..++.|++
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445555555555555555666666666666666666664
No 179
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=23.62 E-value=1.3e+02 Score=19.94 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 022021 121 DKIIQLEDKAK 131 (304)
Q Consensus 121 ~~~~~Le~~l~ 131 (304)
.+++.|+.++.
T Consensus 27 selqalekkla 37 (48)
T 1g6u_A 27 SELQALEKKLA 37 (48)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 180
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=23.53 E-value=1.2e+02 Score=17.94 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022021 40 LETANADLARALAAAQKKLE 59 (304)
Q Consensus 40 Le~~n~~la~ala~~q~~l~ 59 (304)
|+-+|..|...++.+..++.
T Consensus 5 lefendaleqkiaalkqkia 24 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIA 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHH
Confidence 45566666666665555543
No 181
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=23.44 E-value=1.9e+02 Score=27.99 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 110 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 110 e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
+.++++...+.+++..+++++..+++++..+=..+-+
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN 108 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPN 108 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4456777778889999999999999888877777744
No 182
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=23.26 E-value=2.4e+02 Score=21.22 Aligned_cols=60 Identities=18% Similarity=0.178 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 14 ETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 14 ~~~~a~~~E~~~H~~Tr~~a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
+.-.|++.|.++-.. ....+...+..|...++.|. +...+..+|...++.|+..+..|+.
T Consensus 14 eLQSALeaEIqAKQ~----i~EELs~vr~~ni~~eskL~-------eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 14 ELQEALEEEVLTRQS----LSREMEAIRTDNQNFASQLR-------EAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444566777765443 45556777777776665444 4444455555555555555555553
No 183
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.95 E-value=2.8e+02 Score=21.86 Aligned_cols=28 Identities=7% Similarity=0.217 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 56 KKLEMETNQVAELRQQTELKEVAHEELS 83 (304)
Q Consensus 56 ~~l~~~~~~~~~l~q~v~~lE~~l~~l~ 83 (304)
..+...+.++.+++..+..|+.++++++
T Consensus 29 ~~l~~~k~Ei~elrr~iq~L~~el~~l~ 56 (129)
T 3tnu_B 29 DDLRNTKHEISEMNRMIQRLRAEIDNVK 56 (129)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555553
No 184
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.82 E-value=5.1e+02 Score=24.82 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 119 IADKIIQLEDKAKKLEGNIEMTRKE 143 (304)
Q Consensus 119 l~~~~~~Le~~l~~~e~eI~~lr~~ 143 (304)
.+..+..|+..+......|+.|+..
T Consensus 103 ~~~~i~~l~~~~~~~~~~i~~l~~~ 127 (409)
T 1m1j_C 103 HENTIQQLTDMHIMNSNKITQLKQK 127 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3344555555555555555555443
No 185
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=22.78 E-value=3.3e+02 Score=25.95 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
.+.++++...+.+++..+++++..+++++..+=..+-+
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN 103 (421)
T 1ses_A 66 KEALIARGKALGEEAKRLEEALREKEARLEALLLQVPL 103 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45567788888899999999999999888876666644
No 186
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=22.72 E-value=4e+02 Score=23.56 Aligned_cols=79 Identities=11% Similarity=0.094 Sum_probs=50.7
Q ss_pred HHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 98 RLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED-PTEVEIELKRRLGQLTDHLIQKQAQVEALS 176 (304)
Q Consensus 98 ~i~t~~~~e~E~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~-~s~~~~elEkRl~~LTe~Li~KQtqlEsl~ 176 (304)
+-.+..+.+.|...|+.--..|+.+ -.+++.++-++++.++.+.++ |.-..+.+=.|+ |+.+++|.
T Consensus 16 ~Yf~~~~~~~EH~~f~~Ak~rLe~~---hr~k~~~VmkEW~eae~q~k~lpkadkk~m~~rF----------Q~~v~aLE 82 (219)
T 3pmr_A 16 IYFGMPGEISEHEGFLRAKMDLEER---RMRQINEVMREWAMADNQSKNLPKADRQALNEHF----------QSILQTLE 82 (219)
T ss_dssp HHHCSCTTSCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHH----------HHHHHHHH
T ss_pred hhhcCCCCcchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH----------HHHHHHHh
Confidence 3344556667888886433334332 234567788889999888887 554445555555 67777887
Q ss_pred hhhHHHHHHHHHH
Q 022021 177 SEKATLAFRIEAV 189 (304)
Q Consensus 177 sEk~al~~qLErl 189 (304)
.|.++-.-||+..
T Consensus 83 ~E~~~ErqqL~et 95 (219)
T 3pmr_A 83 EQVSGERQRLVET 95 (219)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH
Confidence 7777766666654
No 187
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=22.67 E-value=1.4e+02 Score=19.04 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022021 52 AAAQKKLEMETNQVAELRQQTE 73 (304)
Q Consensus 52 a~~q~~l~~~~~~~~~l~q~v~ 73 (304)
++.|..+++.+.+-..|++++.
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhhHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 188
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=22.67 E-value=4.5e+02 Score=24.82 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 022021 35 QLLAKLETANADLARALAAA-----QKKLEMETNQVAELRQQTEL 74 (304)
Q Consensus 35 ~R~~~Le~~n~~la~ala~~-----q~~l~~~~~~~~~l~q~v~~ 74 (304)
.++..++.+..++...++.- +.+......+...|+..+..
T Consensus 3 ~~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~ 47 (354)
T 3d5a_X 3 DKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGL 47 (354)
T ss_dssp HHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666655432 34444444444444444433
No 189
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=22.34 E-value=2.4e+02 Score=20.78 Aligned_cols=43 Identities=12% Similarity=0.246 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 39 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 39 ~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
.++..++.|.++|+.++...+. ++..++..+..+|..+..++.
T Consensus 5 ~l~~~~~sLE~~l~e~e~~~~~---~~~~~q~~i~~lE~eL~~~r~ 47 (84)
T 1gk4_A 5 ALKGTNESLERQMREMEENFAV---EAANYQDTIGRLQDEIQNMKE 47 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777766666543 345555666666666666543
No 190
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=22.05 E-value=1.6e+02 Score=18.67 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 117 TFIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 117 ~~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
..+++++.+|=.+-..++.++.+|+.-+
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3566777777777777888888887654
No 191
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=21.31 E-value=2.5e+02 Score=27.65 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 111 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 111 ~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
.+++|...+.+++..|++++..+++++..+=..|-+
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN 110 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGN 110 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345666667778888888888888777765555533
No 192
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=21.15 E-value=2.3e+02 Score=27.95 Aligned_cols=57 Identities=7% Similarity=-0.018 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 28 NTRMEALQLLAKLETANADLARALAAAQKK---LEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 28 ~Tr~~a~~R~~~Le~~n~~la~ala~~q~~---l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
..|.+.+.....|+.+...+++.|..+.+. .+...+++..++++++.+|..+..+..
T Consensus 40 ~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~ 99 (485)
T 3qne_A 40 KEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADK 99 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788888888888888765432 345566777777777777776666554
No 193
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=20.67 E-value=1e+02 Score=21.08 Aligned_cols=21 Identities=10% Similarity=0.034 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 022021 125 QLEDKAKKLEGNIEMTRKEIE 145 (304)
Q Consensus 125 ~Le~~l~~~e~eI~~lr~~l~ 145 (304)
.|++++..++..|..|+..+.
T Consensus 48 ~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 48 QLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555443
No 194
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=20.51 E-value=1.4e+02 Score=21.94 Aligned_cols=27 Identities=7% Similarity=0.138 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022021 118 FIADKIIQLEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 118 ~l~~~~~~Le~~l~~~e~eI~~lr~~l 144 (304)
.|+++...++.+...+..++..|+.++
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666666554
No 195
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=20.46 E-value=4e+02 Score=23.11 Aligned_cols=8 Identities=13% Similarity=0.683 Sum_probs=4.1
Q ss_pred cCCcchhh
Q 022021 219 LRPLFEEK 226 (304)
Q Consensus 219 l~p~f~~~ 226 (304)
..|.|..+
T Consensus 134 Y~P~l~~r 141 (190)
T 4emc_A 134 YAPVLKQR 141 (190)
T ss_dssp EEECCSSS
T ss_pred Eecccccc
Confidence 33666543
No 196
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=20.22 E-value=1.4e+02 Score=23.61 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 111 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTR 141 (304)
Q Consensus 111 ~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr 141 (304)
.++++|....+++..|.+++..++.++.+.|
T Consensus 86 ~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 86 EWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555566677777777777777777665
Done!