Query 022021
Match_columns 304
No_of_seqs 130 out of 149
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 12:49:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022021.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022021hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 75.6 12 0.00089 27.1 11.7 98 46-144 5-102 (107)
2 d1fxkc_ a.2.5.1 (C:) Prefoldin 58.3 31 0.0023 25.3 13.4 40 37-76 3-42 (133)
3 d1ivsa1 a.2.7.3 (A:797-862) Va 49.9 30 0.0022 22.7 8.8 27 121-147 4-30 (66)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 45.8 47 0.0034 23.7 8.9 97 33-139 6-104 (107)
5 d1fxkc_ a.2.5.1 (C:) Prefoldin 44.0 40 0.0029 24.6 7.6 41 44-84 3-43 (133)
6 d1ivsa1 a.2.7.3 (A:797-862) Va 40.9 35 0.0025 22.4 6.0 29 62-90 3-31 (66)
7 d1gs9a_ a.24.1.1 (A:) Apolipop 35.2 80 0.0059 23.3 8.5 15 151-165 109-123 (144)
8 d1seta1 a.2.7.1 (A:1-110) Sery 22.9 1.2E+02 0.0086 21.3 11.2 38 109-146 66-103 (110)
9 d1seta1 a.2.7.1 (A:1-110) Sery 22.2 1.2E+02 0.0089 21.2 9.4 17 175-191 76-92 (110)
10 d1lrza1 a.2.7.4 (A:245-309) Me 16.8 1.4E+02 0.01 19.7 6.8 25 124-148 6-31 (65)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=75.62 E-value=12 Score=27.14 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhhHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 022021 46 DLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQ 125 (304)
Q Consensus 46 ~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~~~~~~~~~~i~t~~~~e~E~e~~r~El~~l~~~~~~ 125 (304)
+....+..+|..+.....+...+.......+..+..|..--.+..-. -.+.|+.-.+..+.=...++..+.+++.++..
T Consensus 5 e~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vy-k~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~ 83 (107)
T d1fxka_ 5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVY-KSSGNILIRVAKDELTEELQEKLETLQLREKT 83 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEE-EEETTEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHH-HHhcchhhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777666777777766666666666665320110000 00122211111111123334444555556666
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 022021 126 LEDKAKKLEGNIEMTRKEI 144 (304)
Q Consensus 126 Le~~l~~~e~eI~~lr~~l 144 (304)
|+..+..++.++..++..+
T Consensus 84 l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 84 IERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666555544
No 2
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=58.31 E-value=31 Score=25.33 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 37 LAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKE 76 (304)
Q Consensus 37 ~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE 76 (304)
+.+|......|...+..++..+...+....++....+.++
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~ 42 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLS 42 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666665555555555554444433
No 3
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=49.89 E-value=30 Score=22.70 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 022021 121 DKIIQLEDKAKKLEGNIEMTRKEIEDP 147 (304)
Q Consensus 121 ~~~~~Le~~l~~~e~eI~~lr~~l~~~ 147 (304)
.++.+|+.++.+++.+|..+...+++|
T Consensus 4 ~E~~RL~K~l~kl~~~i~~~~~kL~N~ 30 (66)
T d1ivsa1 4 EWRRRQEKRLKELLALAERSQRKLASP 30 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCh
Confidence 455668888888889999999999874
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=45.81 E-value=47 Score=23.69 Aligned_cols=97 Identities=14% Similarity=0.139 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC--CCcchhhhHHHhhhchhHHHH
Q 022021 33 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT--HQTGIYLKRLAASKGVEFERE 110 (304)
Q Consensus 33 a~~R~~~Le~~n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~~~~~~--~~~~~~~~~i~t~~~~e~E~e 110 (304)
...+...++.+...+...+..++..+.+...-+.++... +.+..=+ +-++.. ..+...+.+.+... .+
T Consensus 6 ~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l----~~d~~vy-k~vG~vLv~~~~~e~~~~l~~~-----~e 75 (107)
T d1fxka_ 6 QLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRA----ADDAEVY-KSSGNILIRVAKDELTEELQEK-----LE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----CTTCCEE-EEETTEEEEECHHHHHHHHHHH-----HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CcccHHH-HHhcchhhcCcHHHHHHHHHHH-----HH
Confidence 344455555555555555555555554444433333321 1110000 011111 11223344444444 56
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022021 111 ILEAEYTFIADKIIQLEDKAKKLEGNIEM 139 (304)
Q Consensus 111 ~~r~El~~l~~~~~~Le~~l~~~e~eI~~ 139 (304)
-+..++..++..+..+++++......|..
T Consensus 76 ~l~~~i~~l~~q~~~l~~~l~~~~~~l~~ 104 (107)
T d1fxka_ 76 TLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777888887777776653
No 5
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=44.03 E-value=40 Score=24.65 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022021 44 NADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 84 (304)
Q Consensus 44 n~~la~ala~~q~~l~~~~~~~~~l~q~v~~lE~~l~~l~~ 84 (304)
.+++...+..++..++..+.++..+......++.....++.
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~ 43 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788888888888888888777777766666553
No 6
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=40.91 E-value=35 Score=22.39 Aligned_cols=29 Identities=3% Similarity=-0.089 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 022021 62 TNQVAELRQQTELKEVAHEELSQRNSNTH 90 (304)
Q Consensus 62 ~~~~~~l~q~v~~lE~~l~~l~~~~~~~~ 90 (304)
..+...|..+.+.++..+..++.++++.+
T Consensus 3 ~~E~~RL~K~l~kl~~~i~~~~~kL~N~~ 31 (66)
T d1ivsa1 3 EEWRRRQEKRLKELLALAERSQRKLASPG 31 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCChH
Confidence 34566777777788888888877766665
No 7
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=35.17 E-value=80 Score=23.34 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 022021 151 EIELKRRLGQLTDHL 165 (304)
Q Consensus 151 ~~elEkRl~~LTe~L 165 (304)
..+|..++...++.|
T Consensus 109 ~ee~r~~l~p~~eel 123 (144)
T d1gs9a_ 109 TEELRVRLASHLRKL 123 (144)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666655554444
No 8
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=22.88 E-value=1.2e+02 Score=21.29 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022021 109 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 146 (304)
Q Consensus 109 ~e~~r~El~~l~~~~~~Le~~l~~~e~eI~~lr~~l~~ 146 (304)
.+-+.++...+.+++..++.+++.++.++..+-..+-+
T Consensus 66 ~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iPN 103 (110)
T d1seta1 66 KEALIARGKALGEEAKRLEEALREKEARLEALLLQVPL 103 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44566777888888889999988888888877666644
No 9
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=22.18 E-value=1.2e+02 Score=21.20 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=7.0
Q ss_pred hhhhhHHHHHHHHHHHh
Q 022021 175 LSSEKATLAFRIEAVSR 191 (304)
Q Consensus 175 l~sEk~al~~qLErl~~ 191 (304)
+..+...++-++..++.
T Consensus 76 lk~~i~~le~~~~~~~~ 92 (110)
T d1seta1 76 LGEEAKRLEEALREKEA 92 (110)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 10
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=16.82 E-value=1.4e+02 Score=19.68 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CC
Q 022021 124 IQLEDKAKKLEGNIEMTRKEIED-PT 148 (304)
Q Consensus 124 ~~Le~~l~~~e~eI~~lr~~l~~-~s 148 (304)
..|+.+..++..+|..+...+.. |.
T Consensus 6 ~~L~~~~~~L~~~i~k~~~~leknP~ 31 (65)
T d1lrza1 6 KELNEERDILNKDLNKALKDIEKRPE 31 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 45666666667777777777754 54
Done!