Query 022022
Match_columns 304
No_of_seqs 173 out of 577
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 07:25:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04188 Mannosyl_trans2: Mann 100.0 7.8E-66 1.7E-70 506.4 28.0 291 10-303 2-292 (443)
2 KOG2647 Predicted Dolichyl-pho 100.0 1.5E-62 3.3E-67 465.2 20.6 296 5-303 8-306 (444)
3 COG5542 Predicted integral mem 99.9 8.5E-27 1.8E-31 222.1 18.5 217 69-303 71-290 (420)
4 PF13231 PMT_2: Dolichyl-phosp 99.1 2.3E-08 4.9E-13 83.7 19.2 117 94-222 3-127 (159)
5 TIGR03766 conserved hypothetic 99.0 1.9E-07 4.2E-12 93.6 23.3 145 70-225 90-251 (483)
6 PF02366 PMT: Dolichyl-phospha 98.7 3.3E-06 7.2E-11 76.8 19.7 97 123-219 82-191 (245)
7 TIGR03663 conserved hypothetic 98.2 0.00025 5.4E-09 70.5 21.9 133 71-217 25-170 (439)
8 COG1807 ArnT 4-amino-4-deoxy-L 98.1 0.00039 8.5E-09 70.3 20.5 154 91-263 62-225 (535)
9 PRK13279 arnT 4-amino-4-deoxy- 97.9 0.0024 5.3E-08 65.2 22.1 108 93-211 62-181 (552)
10 PLN02841 GPI mannosyltransfera 97.4 0.0066 1.4E-07 60.1 15.9 175 10-224 9-184 (440)
11 PF09852 DUF2079: Predicted me 97.4 0.013 2.8E-07 58.3 17.7 98 124-221 60-159 (449)
12 PF09594 DUF2029: Protein of u 97.3 0.021 4.5E-07 50.9 17.0 66 157-222 57-122 (241)
13 PF03901 Glyco_transf_22: Alg9 97.2 0.043 9.3E-07 53.9 18.8 102 123-225 81-195 (418)
14 COG1287 Uncharacterized membra 97.0 0.054 1.2E-06 57.6 19.2 122 85-213 79-215 (773)
15 KOG3359 Dolichyl-phosphate-man 97.0 0.048 1E-06 56.8 17.8 199 70-271 59-281 (723)
16 PF02516 STT3: Oligosaccharyl 97.0 0.027 5.8E-07 56.0 15.5 136 84-226 61-209 (483)
17 COG1928 PMT1 Dolichyl-phosphat 96.9 0.032 7E-07 57.9 15.0 199 70-271 48-269 (699)
18 PLN02816 mannosyltransferase 96.8 0.52 1.1E-05 48.3 23.2 98 124-222 119-226 (546)
19 TIGR03459 crt_membr carotene b 96.5 0.16 3.5E-06 50.8 17.0 129 90-228 140-270 (470)
20 PF10131 PTPS_related: 6-pyruv 96.5 0.43 9.2E-06 49.7 20.8 84 126-210 26-119 (616)
21 PF06728 PIG-U: GPI transamida 96.4 0.29 6.3E-06 47.8 18.1 100 127-226 84-195 (382)
22 KOG3893 Mannosyltransferase [C 95.5 0.12 2.6E-06 49.2 10.0 94 126-220 98-193 (405)
23 COG4346 Predicted membrane-bou 95.4 0.4 8.7E-06 46.2 13.2 90 132-222 163-253 (438)
24 COG3463 Predicted membrane pro 95.3 0.21 4.5E-06 49.3 11.4 94 125-218 89-184 (458)
25 PF04922 DIE2_ALG10: DIE2/ALG1 95.1 1.5 3.3E-05 42.9 16.8 71 153-223 91-162 (379)
26 PF11028 DUF2723: Protein of u 94.9 2 4.2E-05 37.7 15.2 98 124-222 41-164 (178)
27 COG5305 Predicted membrane pro 94.6 3.4 7.5E-05 42.4 18.2 82 90-183 94-178 (552)
28 PF03155 Alg6_Alg8: ALG6, ALG8 94.1 1.4 3.1E-05 44.3 14.2 107 151-262 131-244 (469)
29 PF05007 Mannosyl_trans: Manno 90.9 1.5 3.2E-05 40.8 8.7 51 174-224 5-55 (259)
30 PF05208 ALG3: ALG3 protein; 90.6 2.9 6.3E-05 40.7 10.8 104 158-269 109-214 (368)
31 KOG2762 Mannosyltransferase [C 90.0 5.5 0.00012 38.7 11.9 108 154-269 133-242 (429)
32 KOG2576 Glucosyltransferase - 88.5 3.6 7.8E-05 40.5 9.6 137 126-264 104-246 (500)
33 KOG2642 Alpha-1,2 glucosyltran 83.7 16 0.00034 35.7 11.1 68 160-227 119-187 (446)
34 COG5650 Predicted integral mem 83.1 1.8 3.9E-05 43.9 4.8 105 158-272 200-304 (536)
35 PF09586 YfhO: Bacterial membr 82.5 73 0.0016 34.1 18.8 85 124-208 90-180 (843)
36 PF14897 EpsG: EpsG family 81.7 43 0.00093 30.8 17.1 130 73-219 24-157 (330)
37 COG5617 Predicted integral mem 75.6 1.2E+02 0.0026 32.6 15.3 130 70-220 54-196 (801)
38 PF09913 DUF2142: Predicted me 67.0 1.2E+02 0.0027 29.1 18.5 90 121-217 119-218 (389)
39 PHA02898 virion envelope prote 59.4 41 0.00089 26.1 6.1 66 209-276 9-77 (92)
40 PRK13375 pimE mannosyltransfer 58.3 2E+02 0.0044 28.6 14.4 28 191-218 167-194 (409)
41 KOG2552 Major facilitator supe 56.4 1.7E+02 0.0038 28.7 11.2 67 154-220 145-212 (388)
42 KOG2575 Glucosyltransferase - 51.8 2.6E+02 0.0057 28.0 13.0 132 123-261 138-277 (510)
43 PHA03048 IMV membrane protein; 50.5 90 0.0019 24.3 6.7 25 248-274 50-74 (93)
44 PF00040 fn2: Fibronectin type 34.8 21 0.00045 23.6 1.0 27 270-300 14-40 (42)
45 KOG2927 Membrane component of 32.7 46 0.00099 32.4 3.3 15 92-106 205-219 (372)
46 COG4745 Predicted membrane-bou 29.2 6.4E+02 0.014 25.8 13.9 70 152-221 111-188 (556)
47 PF05767 Pox_A14: Poxvirus vir 27.5 2.5E+02 0.0055 21.9 6.0 24 248-273 51-74 (92)
48 smart00130 KR Kringle domain. 25.4 37 0.00081 25.7 1.1 20 266-285 47-66 (83)
49 COG2211 MelB Na+/melibiose sym 24.1 7.6E+02 0.017 25.0 11.0 91 132-225 283-394 (467)
50 cd00108 KR Kringle domain; Kri 23.1 44 0.00095 25.3 1.1 21 266-286 48-68 (83)
51 KOG2292 Oligosaccharyltransfer 22.4 2.7E+02 0.0058 29.0 6.7 63 132-195 125-190 (751)
52 PF03839 Sec62: Translocation 20.8 1.7E+02 0.0037 26.7 4.6 14 92-105 126-139 (224)
53 KOG2515 Mannosyltransferase [C 20.0 9.6E+02 0.021 24.6 12.6 85 140-225 112-198 (568)
No 1
>PF04188 Mannosyl_trans2: Mannosyltransferase (PIG-V)); InterPro: IPR007315 This is a family of eukaryotic ER membrane proteins that are involved in the synthesis of glycosylphosphatidylinositol (GPI), a glycolipid that anchors many proteins to the eukaryotic cell surface. Proteins in this family are involved in transferring the second mannose in the biosynthetic pathway of GPI [], [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=100.00 E-value=7.8e-66 Score=506.43 Aligned_cols=291 Identities=42% Similarity=0.718 Sum_probs=249.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhccccccHHHHHHHhhcCCCccc
Q 022022 10 TQVFKSAAVSRLLLLALIVLWRALLSPYDTSAPLNPNCLVDPHQQQHSPNSSIGSRIESSIVWDSVYFVRIAQCGYEYEQ 89 (304)
Q Consensus 10 ~~vl~~~l~sR~~~~~~~~~~~~~~p~~dts~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~WDa~~f~~IA~~GY~~e~ 89 (304)
++|++.++.+|+++++++++.+...-|+||+..+.++..++++ ...++..++.+.++.|||++||++||+|||++||
T Consensus 2 ~~~~~~~~~~r~l~lll~~l~~~~~~~~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~l~rWDa~~F~~IA~~GY~~E~ 78 (443)
T PF04188_consen 2 KGVVKFFVLSRILQLLLQILFPGLLFDTSTSLLLDPPCSSAPS---SLIDSFVNRLLWGLVRWDAVYFLRIAEHGYSYEH 78 (443)
T ss_pred CcccccchHHHHHHHHHHHHHhCcCCCCChHhhcCCCcccCCC---cchHhHHHHHHhcccchhHHHHHHHHHhCCCccc
Confidence 5688999999999999999998766667777767665531121 1223455677888999999999999999999999
Q ss_pred cccccccHHHHHHHHHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHhhchhhH
Q 022022 90 SYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASI 169 (304)
Q Consensus 90 ~~AFfPl~P~lvr~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~a~~~Ly~L~~~~~~~~~~a~~a~ll~~~~Pasi 169 (304)
++||||+||.++|.+++.+..++.+.++.......+|+++||+++.++++++|+++++.+++++.|..++++++++|+++
T Consensus 79 ~~AFfPl~P~lvr~~~~~~~~~l~~~l~~~~~l~~~~~~vs~~~~~la~~~L~~l~~~~~~~~~~a~~a~ll~~~~Pasi 158 (443)
T PF04188_consen 79 EWAFFPLYPLLVRLLSKSLLSPLYGLLSVGSALLNSGILVSNVAFLLAAVALYRLTRRVFKSRKLALLAALLFIFSPASI 158 (443)
T ss_pred cccccCcHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHccHHH
Confidence 99999999999999996544444444444445667899999999999999999999999999999999999999999999
Q ss_pred HHHhhchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022022 170 FYTSIYSESLYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYFCFQTMHQAYDALFLKKRHFLAMWILVCGA 249 (304)
Q Consensus 170 f~sa~YtEslF~~l~~~gl~~~~~~~~~~a~~~~~lA~~~RsnGil~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 249 (304)
|++++||||+|+++++.|++.+++++++.|++++++|+++||||+++++++.++.++..+....++++....++.++..+
T Consensus 159 F~sa~YsEslf~~lsf~gl~~~~~~~~~~a~~~~~la~~~RsnGll~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 238 (443)
T PF04188_consen 159 FLSAPYSESLFALLSFAGLYLLERGRWWLAGLLFALATLTRSNGLLLAGFFAYELLGIYYLDLRQLRRQRRLVRALISAI 238 (443)
T ss_pred HhhcCccHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999988876543333344444577788888
Q ss_pred HHHHHHHHHHHHHHHHhHhhccCCCCCCCCcccccccCCcchHHHhhhhccCCC
Q 022022 250 LRCICIFAPFISFQVYGYFNMCLGRSPDEMRPWCKAKVPLLYNFIQSHYWFSSF 303 (304)
Q Consensus 250 l~~~iv~~P~~~~q~~~y~~fC~~~~~~~~~~WC~~~~P~~Ys~vQ~~YWnvGF 303 (304)
+.++++++|++++|+|+|.+||++++.++.+|||++++|++|+|||+|||||||
T Consensus 239 l~~~~i~~pf~~~q~~~y~~fC~~~~~~~~~~WC~~~~P~~Ys~vQ~~YWnvGf 292 (443)
T PF04188_consen 239 LSGLLIFLPFVLFQYYAYYRFCPPRSFGDEPPWCNNTIPSIYSFVQSHYWNVGF 292 (443)
T ss_pred hhhHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhhccCccchHHHHHHHHccch
Confidence 899999999999999999999998754345899999999999999999999998
No 2
>KOG2647 consensus Predicted Dolichyl-phosphate-mannose-protein mannosyltransferase [General function prediction only]
Probab=100.00 E-value=1.5e-62 Score=465.24 Aligned_cols=296 Identities=35% Similarity=0.591 Sum_probs=258.4
Q ss_pred CCccHHH--HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhccccccHHHHHHHhh
Q 022022 5 NFPHETQ--VFKSAAVSRLLLLALIVLWRALLSPYDTSAPLNPNCLVDPHQQQHSPNSSIGSRIESSIVWDSVYFVRIAQ 82 (304)
Q Consensus 5 ~~~~~~~--vl~~~l~sR~~~~~~~~~~~~~~p~~dts~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~WDa~~f~~IA~ 82 (304)
+|+...+ +.+.++.+|+.+++++.+++...-|.++++.+.+|+...++ +...+...++.++++.+|||+||++|||
T Consensus 8 ~~~~~~~~~~~~~~~~sRl~v~lLq~i~~~~~~~~~~~~~~n~p~~~~~~--s~~~~~~~~~~l~~l~~WDa~~FL~iae 85 (444)
T KOG2647|consen 8 RDKSTLEYFVTRYAVFSRLIVLLLQFLANIAAIPDHTSDAFNLPRLSPRQ--SSFEDVVVKRLLGGLLSWDAEYFLFIAE 85 (444)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhcchhccccc--chHHHHHHHHHHhccchhhHHHHHHHHh
Confidence 4566666 89999999999999999999544445667788888765432 2222456678899999999999999999
Q ss_pred cCCCccccccccccHHHHHHHHHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 022022 83 CGYEYEQSYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLF 162 (304)
Q Consensus 83 ~GY~~e~~~AFfPl~P~lvr~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~a~~~Ly~L~~~~~~~~~~a~~a~ll~ 162 (304)
|||.+||++||+||+|..+|.+... ..++.+.+|......++++.+|+.++++++..||++++..++|++.+..|+++|
T Consensus 86 ~gy~fEh~~AF~pl~P~~v~~~~~~-~~~~~~~l~~~~~~~i~~~~vn~~~f~la~~~Lyql~~~~~~~~k~s~~a~liF 164 (444)
T KOG2647|consen 86 HGYLFEHELAFFPLFPFVVRLVTEV-LRPIEPVLSLRSILLISAVLVNIFFFMLAAVALYQLTRIILHDPKISFYAALLF 164 (444)
T ss_pred hchHHhhhHHhccccHHHHHHHHHh-cccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHhhhhhee
Confidence 9999999999999999999999944 467888888887888999999999999999999999999999999999999999
Q ss_pred hhchhhHHHHhhchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH-HHHHhhhHHHH
Q 022022 163 CFNPASIFYTSIYSESLYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYFCFQTMHQAYD-ALFLKKRHFLA 241 (304)
Q Consensus 163 ~~~Pasif~sa~YtEslF~~l~~~gl~~~~~~~~~~a~~~~~lA~~~RsnGil~~~~~~~~~l~~~~~-~~~~~~~~~~~ 241 (304)
|+|||+||++++||||+|+++++.|++.+++++...+.+++++++++||||+++++++.+...+..+. ...+..|....
T Consensus 165 cfnPAsIF~ts~YSEsLfa~~s~~Gi~~~~~~~~~~~~~~~~l~~~~rSngil~~~~~~~~~~~~~F~~~L~~~~r~~~~ 244 (444)
T KOG2647|consen 165 CFNPASIFLTAGYSESLFALFSFLGILFLEKGRQFTGTLLFSLATLVRSNGILSAGFLMHSQNRGFFIFSLTMLNRLRQL 244 (444)
T ss_pred EecchHhhhhHHhhHHHHHHHHHHHHHHHhcCCccceehHHHHHHHHHhhhhhhHHHHhhhhcceeeeeehHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998875543322 11223333345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCCCCCcccccccCCcchHHHhhhhccCCC
Q 022022 242 MWILVCGALRCICIFAPFISFQVYGYFNMCLGRSPDEMRPWCKAKVPLLYNFIQSHYWFSSF 303 (304)
Q Consensus 242 ~~~~~~~~l~~~iv~~P~~~~q~~~y~~fC~~~~~~~~~~WC~~~~P~~Ys~vQ~~YWnvGF 303 (304)
++.++...+.++++.+|+..+|||+|.+||++++.+|.+|||..++|.+|+|||+|||||||
T Consensus 245 ~~~i~~~~l~~l~~~~p~~~~qyy~y~~fC~~~~~~e~spwC~~~~p~~Ys~IQ~~YW~VGf 306 (444)
T KOG2647|consen 245 FKQIVSLFLSILTFLLPLAAFQYYGYKLFCPPRTAWEKSPWCFGILPLIYSYIQSHYWNVGF 306 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCCccccCcccceeeccchHHHHHHhcccce
Confidence 78888889999999999999999999999999888888999999999999999999999998
No 3
>COG5542 Predicted integral membrane protein [Function unknown]
Probab=99.95 E-value=8.5e-27 Score=222.09 Aligned_cols=217 Identities=18% Similarity=0.283 Sum_probs=168.4
Q ss_pred cccccHHHHHHHhhcCCCccccccccccHHHHHHHHHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022022 69 SIVWDSVYFVRIAQCGYEYEQSYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMI 148 (304)
Q Consensus 69 ~~~WDa~~f~~IA~~GY~~e~~~AFfPl~P~lvr~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~a~~~Ly~L~~~~ 148 (304)
+.+||+.+....-..++.-.|+.+|+|.+|..+|..+.+... + ...+++.++||+++.+++..+|+++++.
T Consensus 71 l~~w~af~~~~~~f~~~~k~~~~~~~p~~~y~i~ii~~L~~~-~--------~~~l~~~l~s~~~~~~~ay~lY~~tk~~ 141 (420)
T COG5542 71 LVHWYAFIALNGGFVRVLKSHFADYFPLYLYWIRIINKLLSS-L--------YFILAIKLFSNIADFVAAYFLYKITKLR 141 (420)
T ss_pred HHHHHHHHHhhhhhhhhhhccccccCchHHHHHHHHHHHHhh-h--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666655566668999999999999999876421 1 2468999999999999999999999999
Q ss_pred hCChhHHHHHHHHHhhchhhHHHHhhc--hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Q 022022 149 LKDPDAALCASLLFCFNPASIFYTSIY--SESLYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYFCFQTMH 226 (304)
Q Consensus 149 ~~~~~~a~~a~ll~~~~Pasif~sa~Y--tEslF~~l~~~gl~~~~~~~~~~a~~~~~lA~~~RsnGil~~~~~~~~~l~ 226 (304)
+++.+.|..+..+++++|+.++.++.| |||+|++++++|+|+..+++...|++++++|+++||||+++++++++..++
T Consensus 142 y~~~~~a~fa~i~~~~~P~~i~~s~iw~~teSlf~ll~~l~iyf~~~k~~~~a~~~faLa~l~Rsngi~~~p~fl~~~ik 221 (420)
T COG5542 142 YGLGSMARFATILVILSPSVIYNSAIWGQTESLFTLLSILAIYFFSIKKQIPALFFFALATLFRSNGIFLSPLFLIPLIK 221 (420)
T ss_pred cccchhhhheEEEEEeccHHHhhhhHHhccchHHHHHHHHHHHHHHccchhHHHHHHHHHHHhccchhHHHHHHHHHHHh
Confidence 988899999999999999999999999 999999999999999999999999999999999999999999999998776
Q ss_pred HHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCCCCCcccccccCCcchHHHhhhhccCCC
Q 022022 227 QAYDALFLKKRH-FLAMWILVCGALRCICIFAPFISFQVYGYFNMCLGRSPDEMRPWCKAKVPLLYNFIQSHYWFSSF 303 (304)
Q Consensus 227 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~iv~~P~~~~q~~~y~~fC~~~~~~~~~~WC~~~~P~~Ys~vQ~~YWnvGF 303 (304)
+.. .+.... ..........++....+..|..--++.+|.+.|++ =+||.++.|++|++||+||||||+
T Consensus 222 ~~~---ik~i~~~l~~~~l~~~~ll~~~~~~~~~~~~~~~~y~~~~~~------f~~~~~~~~~iy~~I~~~~w~vg~ 290 (420)
T COG5542 222 NRK---IKIIWYLLPSGSLTYLSLLMPAWILGRNAFEIFLGYWRQSNG------FKEQGKNAPNIYSWIPNNYWNVGL 290 (420)
T ss_pred hhh---HHHhhhhhhhHHHHHHHHHHHHHHhCccchhhhhhhhccccc------chHHHhcchHHHHhhccceeeeee
Confidence 431 001000 00001111111122222333344455566666654 359999999999999999999996
No 4
>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase
Probab=99.08 E-value=2.3e-08 Score=83.72 Aligned_cols=117 Identities=20% Similarity=0.204 Sum_probs=97.7
Q ss_pred cccHHHHHHHHHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHhhchhhHHHHh
Q 022022 94 LPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASIFYTS 173 (304)
Q Consensus 94 fPl~P~lvr~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~a~~~Ly~L~~~~~~~~~~a~~a~ll~~~~Pasif~sa 173 (304)
.|+++.+++.....++. ...+..++|.+++.++.+.+|++.++.+ +++.+..+++++++.|..+..+.
T Consensus 3 pPl~~~~~~~~~~l~G~-----------~~~~~~~~~~l~~~~~~~~~y~i~r~~~-~~~~a~~~~l~~~~~p~~~~~~~ 70 (159)
T PF13231_consen 3 PPLYFLLLALFFKLFGD-----------SVWALRLFNILFSLLTLLLIYLIARRLF-GRRAALIAALLLALSPMFIFYSA 70 (159)
T ss_pred ChHHHHHHHHHHHHhCc-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHC-CchHHHHHHHHHHHhHHHHHHHH
Confidence 48999999988877531 2356778899999999999999999998 48999999999999999987774
Q ss_pred -hchhHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHhhcchhhHHHHHHHH
Q 022022 174 -IYSESLYALFSVGGLYYLMS-------GALNISVLWLAISGCARSNGVLNAGYFCF 222 (304)
Q Consensus 174 -~YtEslF~~l~~~gl~~~~~-------~~~~~a~~~~~lA~~~RsnGil~~~~~~~ 222 (304)
..+|++..++...+++...+ +.+.+++++.+++..+|+++++..+.++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k~~~~~~~~~~~~ 127 (159)
T PF13231_consen 71 SARPDMLLLFFFLLALYAFYRYIKSKKWRWWILAGLLLGLAFLTKYTFLLLIPALLL 127 (159)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999998887754 22457899999999999999988775444
No 5
>TIGR03766 conserved hypothetical integral membrane protein. Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown.
Probab=98.96 E-value=1.9e-07 Score=93.56 Aligned_cols=145 Identities=19% Similarity=0.152 Sum_probs=103.7
Q ss_pred ccccHHHHHHHhhcCCCc--cccccccc---cHHHHHHHHHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022022 70 IVWDSVYFVRIAQCGYEY--EQSYAFLP---LLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRL 144 (304)
Q Consensus 70 ~~WDa~~f~~IA~~GY~~--e~~~AFfP---l~P~lvr~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~a~~~Ly~L 144 (304)
..||.....+.|.+|-.. ++-.+.+| ++.+..+.+...++. . .....-++|.++..++.+++|++
T Consensus 90 p~~D~~~v~~~A~~~~~~~~~~Y~~~yPnn~g~~l~~~~l~kifg~--------~--~~~~~~llNil~~~~si~liy~i 159 (483)
T TIGR03766 90 IGWDAGAVHTAATKSNESSISNYFSRNPNNLFLLLFMHFLYKLFGE--------T--SWLFFDVVNIVLVDLSALILYKA 159 (483)
T ss_pred cCcCHHHHHHHHhcCCCcccCceeeECCchHHHHHHHHHHHHHhCc--------c--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888764221 12233344 455566666555421 1 23446789999999999999999
Q ss_pred HHHHhCChhHHHHHHHHHhhchhhHHH-HhhchhHHHHHHHHHHHHHHH---h-----hh---HHHHHHHHHHHHhhcch
Q 022022 145 SVMILKDPDAALCASLLFCFNPASIFY-TSIYSESLYALFSVGGLYYLM---S-----GA---LNISVLWLAISGCARSN 212 (304)
Q Consensus 145 ~~~~~~~~~~a~~a~ll~~~~Pasif~-sa~YtEslF~~l~~~gl~~~~---~-----~~---~~~a~~~~~lA~~~Rsn 212 (304)
+++++ ++|.|..+++++++.|+-... ..+|||....++..+++++.. + ++ ...+|++.+++...|||
T Consensus 160 ~k~lf-~~~~a~~a~~l~~l~~~~~~y~~~~Ysd~~~l~~~~l~l~~~~~~~~~~~~~~~~~~~Il~gillal~~~iKp~ 238 (483)
T TIGR03766 160 VKKVF-NKKKAFVALYLFVLLLALSPYILIPYTDTWVLPFVSLFLFLYTVISKKTDLRKKIALSILLGVLLAIAYFIKPS 238 (483)
T ss_pred HHHHh-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999 568899999999999887655 479999999888777755332 2 11 24789999999999999
Q ss_pred hhHHHHHHHHHHH
Q 022022 213 GVLNAGYFCFQTM 225 (304)
Q Consensus 213 Gil~~~~~~~~~l 225 (304)
|++..+.++...+
T Consensus 239 ~iI~liA~~i~~~ 251 (483)
T TIGR03766 239 AIIFVIAIFIVLF 251 (483)
T ss_pred chHHHHHHHHHHH
Confidence 9998766544333
No 6
>PF02366 PMT: Dolichyl-phosphate-mannose-protein mannosyltransferase ; InterPro: IPR003342 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Dolichyl-phosphate-mannose-protein mannosyltransferase proteins 2.4.1.109 from EC belong to the glycosyltransferase family 39 (GT39 from CAZY) and are responsible for O-linked glycosylation of proteins. They catalyse the reaction: Dolichyl phosphate D-mannose + protein -> dolichyl phosphate + O-D-mannosyl-protein. The transfer of mannose to seryl and threonyl residues of secretory proteins is catalyzed by a family of protein mannosyltransferases in Saccharomyces cerevisiae coded for by seven genes (PMT1-7). Protein O-glycosylation is essential for cell wall rigidity and cell integrity and this protein modification is vital for S. cerevisiae [].; GO: 0000030 mannosyltransferase activity, 0006493 protein O-linked glycosylation, 0016020 membrane
Probab=98.68 E-value=3.3e-06 Score=76.84 Aligned_cols=97 Identities=20% Similarity=0.204 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHhhchhhHHHH-hhchhHHHHHHHHHHHHHHHhh-------
Q 022022 123 GLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASIFYT-SIYSESLYALFSVGGLYYLMSG------- 194 (304)
Q Consensus 123 ~~~~~~v~~~~~~~a~~~Ly~L~~~~~~~~~~a~~a~ll~~~~Pasif~s-a~YtEslF~~l~~~gl~~~~~~------- 194 (304)
..+..++|.+++.++++++|.+.++.++|++.|..++++++++|..+..+ ...+|+...++..++++.+.+.
T Consensus 82 ~~~~R~~~~l~~~~~~~l~y~~~~~~~~s~~~al~aa~l~~~~~~~~~~sr~~~~D~~l~~f~~la~~~~~~~~~~~~~~ 161 (245)
T PF02366_consen 82 YWAARLPSALFGALTVPLVYLILRRLFGSRRAALLAALLLALDPSLIVQSRYALLDSILLFFILLAIYCLLRWYRYQPFR 161 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 46778899999999999999999999988999999999999999999887 6789999888877777666433
Q ss_pred -----hHHHHHHHHHHHHhhcchhhHHHHH
Q 022022 195 -----ALNISVLWLAISGCARSNGVLNAGY 219 (304)
Q Consensus 195 -----~~~~a~~~~~lA~~~RsnGil~~~~ 219 (304)
...++++..|+|.+++.+|++..+.
T Consensus 162 ~~~~~~~~l~gi~lGla~~~K~~~~~~~~~ 191 (245)
T PF02366_consen 162 RKWWLWLLLAGIALGLAILTKGPGLLLVLP 191 (245)
T ss_pred cccHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 1247889999999999999875543
No 7
>TIGR03663 conserved hypothetical protein TIGR03663. Members of this protein family, uncommon and rather sporadically distributed, are found almost always in the same genomes as members of family TIGR03662, and frequently as a nearby gene. Members show some N-terminal sequence similarity with Pfam family pfam02366, dolichyl-phosphate-mannose-protein mannosyltransferase. The few invariant residues in this family, found toward the N-terminus, include a dipeptide DE, a tripeptide HGP, and two different Arg residues. Up to three members may be found in a genome. The function is unknown.
Probab=98.24 E-value=0.00025 Score=70.49 Aligned_cols=133 Identities=18% Similarity=0.216 Sum_probs=95.1
Q ss_pred cccHHHHHHHh----hcC-CCccccccccccHHHHHHHHHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022022 71 VWDSVYFVRIA----QCG-YEYEQSYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLS 145 (304)
Q Consensus 71 ~WDa~~f~~IA----~~G-Y~~e~~~AFfPl~P~lvr~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~a~~~Ly~L~ 145 (304)
.||-.+|-.++ ++| |.++.. ...|+++.++......++ . ...++.+.+.+++ +.++++|.+.
T Consensus 25 ~~DEa~ya~~a~~ml~~g~~~~~p~-~h~Pll~wl~A~~~~lFG--------~---se~a~RL~~aL~g-~~v~l~~~~~ 91 (439)
T TIGR03663 25 HHDEAIHASFILKLLETGVYSYDPA-YHGPFLYHITAAVFHLFG--------I---SDATARLLPAVFG-VLLPLTAWLY 91 (439)
T ss_pred CCCchhHHHHHHHHHhcCCCCcCCC-CCCCHHHHHHHHHHHHhC--------C---CHHHHHHHHHHHH-HHHHHHHHHH
Confidence 45644444444 344 444422 336899988887766542 1 1356777887887 4467788888
Q ss_pred HHHhCChhHHHHHHHHHhhchhhHHHH-hhchhHHHHHHHHHHHHHHHh----h--h-HHHHHHHHHHHHhhcchhhHHH
Q 022022 146 VMILKDPDAALCASLLFCFNPASIFYT-SIYSESLYALFSVGGLYYLMS----G--A-LNISVLWLAISGCARSNGVLNA 217 (304)
Q Consensus 146 ~~~~~~~~~a~~a~ll~~~~Pasif~s-a~YtEslF~~l~~~gl~~~~~----~--~-~~~a~~~~~lA~~~RsnGil~~ 217 (304)
++.+ +++.+..++++.+++|..+..+ ..-+|.+..++..++++++.+ + + .+++++.++++.+++.++.+..
T Consensus 92 r~~~-~~~~al~AAllla~sp~~~~~sr~~~~D~~l~~f~~lal~~l~r~~~~~~~~~~~lag~~~gLa~ltKg~~~l~~ 170 (439)
T TIGR03663 92 RKRL-GDNEVLWAAVLLAFSPVMVYYSRFMRNDIFVAFFTLLAVGAAFRYLDTGKRRYLFLAASALALAFTSKENAYLII 170 (439)
T ss_pred HHHc-CcHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888 5779999999999999998776 577898888888877776643 1 2 3578999999999999977655
No 8
>COG1807 ArnT 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
Probab=98.11 E-value=0.00039 Score=70.34 Aligned_cols=154 Identities=19% Similarity=0.151 Sum_probs=107.1
Q ss_pred ccccccHHHHHHHHHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHhhchhhHH
Q 022022 91 YAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASIF 170 (304)
Q Consensus 91 ~AFfPl~P~lvr~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~a~~~Ly~L~~~~~~~~~~a~~a~ll~~~~Pasif 170 (304)
+.=.|+...+......+++ ....+..+.++++..+++++.|.++++++++ +.|..|++++...|.-+.
T Consensus 62 ~~kPPl~~Wl~a~~~~lfG-----------~~~~~~rl~~~l~~~~~~~l~y~l~k~l~~~-~~a~~aali~~~~p~~~~ 129 (535)
T COG1807 62 FEKPPLVYWLQALSYLLFG-----------VNEWSARLPSALAGALTALLVYWLAKRLFGR-LAALLAALILLLTPLFFL 129 (535)
T ss_pred cCCCcHHHHHHHHHHHHcC-----------cchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHH
Confidence 3345777777766555542 1235667778888889999999999999965 899999999999999988
Q ss_pred HH-hhchhHHHHHHHHHHHHHHH---hh--h---HHHHHHHHHHHHhhcchhhHHHHH-HHHHHHHHHHHHHHHhhhHHH
Q 022022 171 YT-SIYSESLYALFSVGGLYYLM---SG--A---LNISVLWLAISGCARSNGVLNAGY-FCFQTMHQAYDALFLKKRHFL 240 (304)
Q Consensus 171 ~s-a~YtEslF~~l~~~gl~~~~---~~--~---~~~a~~~~~lA~~~RsnGil~~~~-~~~~~l~~~~~~~~~~~~~~~ 240 (304)
.+ ..-+++..+++..++++.+. ++ + ++..++..|++.++|.++.+..+. ++..... .+.|...
T Consensus 130 ~~~~~~~D~~l~~f~~la~~~~~~~~~~~~~~~~~l~~gl~lGL~~ltKg~~~~~l~~~~~~~l~~-------~~~~~~~ 202 (535)
T COG1807 130 IGRLALLDAALAFFLTLALALLYLALRARGKLKWLLLLGLALGLGFLTKGPGALLLPLILLLLLLA-------PRLRRLL 202 (535)
T ss_pred HhHHHhhhHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH-------HhHHHHH
Confidence 76 56688888777777766553 22 1 356789999999999998887762 2221111 1122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022022 241 AMWILVCGALRCICIFAPFISFQ 263 (304)
Q Consensus 241 ~~~~~~~~~l~~~iv~~P~~~~q 263 (304)
...+...+.+.++++..|+...+
T Consensus 203 ~~~~~~~g~~l~~l~~~pW~~~~ 225 (535)
T COG1807 203 RDLRLWLGLLLGLLPVLPWLLAI 225 (535)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Confidence 23455667777788889998754
No 9
>PRK13279 arnT 4-amino-4-deoxy-L-arabinose transferase; Provisional
Probab=97.92 E-value=0.0024 Score=65.20 Aligned_cols=108 Identities=11% Similarity=-0.003 Sum_probs=75.8
Q ss_pred ccccHHHHHHHHHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHhhchhhHHHH
Q 022022 93 FLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASIFYT 172 (304)
Q Consensus 93 FfPl~P~lvr~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~a~~~Ly~L~~~~~~~~~~a~~a~ll~~~~Pasif~s 172 (304)
=.|+...++.....+++ . ...++.+.|.++.++++++.|.+++++++|++.|..|++++..+|.-...+
T Consensus 62 KPPL~yWl~Als~~LFG--------~---~~~a~RLpsaL~~~lt~llvy~larrl~~~r~~AllAaLIlls~~~v~~~g 130 (552)
T PRK13279 62 KPIAGYWINSIGQWLFG--------D---NNFGVRFGSVFSTLLSALLVYWLALRLWRDRRTALLAALIYLSLFLVYGIG 130 (552)
T ss_pred CCcHHHHHHHHHHHHcC--------C---CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 34676777776555542 1 236678888899999999999999999988999999999998887654432
Q ss_pred -hhchhHHHHHHHHH---HHHHHHh----h-h---HHHHHHHHHHHHhhcc
Q 022022 173 -SIYSESLYALFSVG---GLYYLMS----G-A---LNISVLWLAISGCARS 211 (304)
Q Consensus 173 -a~YtEslF~~l~~~---gl~~~~~----~-~---~~~a~~~~~lA~~~Rs 211 (304)
..-++++.+++..+ +++...+ + + +...|+..|++.+++.
T Consensus 131 ~~a~~D~~l~~fi~lal~~f~~~~~~~~~~~~~~~~lllGla~Glg~LTKG 181 (552)
T PRK13279 131 TYAVLDPMITLWLTAAMCSFWLALQAQTRRGKIGGYLLLGLACGMGFMTKG 181 (552)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhcc
Confidence 23447765555443 4444432 1 1 3466788899999996
No 10
>PLN02841 GPI mannosyltransferase
Probab=97.41 E-value=0.0066 Score=60.10 Aligned_cols=175 Identities=15% Similarity=0.193 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhccccccHHHHHHHhhcCCCccc
Q 022022 10 TQVFKSAAVSRLLLLALIVLWRALLSPYDTSAPLNPNCLVDPHQQQHSPNSSIGSRIESSIVWDSVYFVRIAQCGYEYEQ 89 (304)
Q Consensus 10 ~~vl~~~l~sR~~~~~~~~~~~~~~p~~dts~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~WDa~~f~~IA~~GY~~e~ 89 (304)
+.++..+++.|++..... .. .|..-+..-| + .+...-.||.++..-...-|+- +
T Consensus 9 ~~vll~a~~lRl~L~~yg---~~----~D~~~eVsyt----d--------------idY~vftDga~lv~~G~SPY~r-~ 62 (440)
T PLN02841 9 RSLLLASALLRVALIVYG---EW----QDAHMEVRYT----D--------------VDYLVFSDAAALVASGKSPFAR-D 62 (440)
T ss_pred HHHHHHHHHHHHHHHHHH---HH----hccCcccccc----c--------------cchHHHHHHHHHHHcCCCCCCC-C
Confidence 678888899999877732 11 2322222111 1 1122447888887665544532 5
Q ss_pred cccccccHHHHHHHHHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHhhchhhH
Q 022022 90 SYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASI 169 (304)
Q Consensus 90 ~~AFfPl~P~lvr~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~a~~~Ly~L~~~~~~~~~~a~~a~ll~~~~Pasi 169 (304)
+.-.-|++-.++ +.... . + ...|-++=.++-++++..++++.+..-.+++.+...+.++.+||-.+
T Consensus 63 TYrytPLLa~Ll--lPn~~---~----~-----~~fgk~LF~l~Dll~a~ll~~il~~~~~~~~~~~~~a~~wL~NPlti 128 (440)
T PLN02841 63 TYRYSPLLALLL--VPNSL---L----H-----RSWGKFLFSAADLLVGLFIHTILRLRGVPEKVCTWSVMVWLFNPFTF 128 (440)
T ss_pred CCCcChHHHHHH--cchhh---h----h-----hhHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHhCcHHH
Confidence 677788877766 11110 0 0 01233333456677788888887654323445556688899999999
Q ss_pred HHH-hhchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q 022022 170 FYT-SIYSESLYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYFCFQT 224 (304)
Q Consensus 170 f~s-a~YtEslF~~l~~~gl~~~~~~~~~~a~~~~~lA~~~RsnGil~~~~~~~~~ 224 (304)
-.+ ..=+|++-.++....++.+.+++...|+++.|+++-.|---++.+..++...
T Consensus 129 ~istrGSse~i~~~lvl~~L~~l~~g~~~~Aa~~lglavhfkiYPiIy~~Pi~l~l 184 (440)
T PLN02841 129 TIGTRGNCEPIVCAVILWILICLMNGRLLQAAFWYGLVVHFRIYPIIYALPIILVL 184 (440)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 776 6889999999999999999999999999999999999988888777665543
No 11
>PF09852 DUF2079: Predicted membrane protein (DUF2079); InterPro: IPR018650 This entry is represented by Sulfolobus virus STSV1, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains a family of various integral membrane proteins with no known function.
Probab=97.36 E-value=0.013 Score=58.34 Aligned_cols=98 Identities=18% Similarity=0.187 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHhhchhhHHHH--hhchhHHHHHHHHHHHHHHHhhhHHHHHH
Q 022022 124 LAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASIFYT--SIYSESLYALFSVGGLYYLMSGALNISVL 201 (304)
Q Consensus 124 ~~~~~v~~~~~~~a~~~Ly~L~~~~~~~~~~a~~a~ll~~~~Pasif~s--a~YtEslF~~l~~~gl~~~~~~~~~~a~~ 201 (304)
..-.++..++..++++.+|++.++...+++.|...++.+.++|+-.... -...|.++.-+.+.+++.++++|+..+.+
T Consensus 60 ~tLli~Qal~la~~~~pl~~lar~~~~~~~~a~~~~~~ylL~p~~~~~~~~dFH~~~~avPll~~~~~~~~~~r~~~~~~ 139 (449)
T PF09852_consen 60 LTLLIVQALLLALGAIPLYRLARRRLLSRRLALLIALAYLLSPGLQGANLFDFHPVAFAVPLLLWALYALERRRWRLFIL 139 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhHHHHhhhhCCCcHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 4456678888889999999999999878999999999999999877543 24567777677788888888999999999
Q ss_pred HHHHHHhhcchhhHHHHHHH
Q 022022 202 WLAISGCARSNGVLNAGYFC 221 (304)
Q Consensus 202 ~~~lA~~~RsnGil~~~~~~ 221 (304)
+..+..++|..--+....+.
T Consensus 140 ~~ll~llvKEd~~l~v~~~g 159 (449)
T PF09852_consen 140 WALLLLLVKEDLGLTVAGIG 159 (449)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 99999999966555444433
No 12
>PF09594 DUF2029: Protein of unknown function (DUF2029); InterPro: IPR018584 This is a putative transmembrane protein from prokaryotes. It is likely to be conserved between Mycobacterium species []. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=97.32 E-value=0.021 Score=50.89 Aligned_cols=66 Identities=18% Similarity=0.087 Sum_probs=55.0
Q ss_pred HHHHHHhhchhhHHHHhhchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcchhhHHHHHHHH
Q 022022 157 CASLLFCFNPASIFYTSIYSESLYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYFCF 222 (304)
Q Consensus 157 ~a~ll~~~~Pasif~sa~YtEslF~~l~~~gl~~~~~~~~~~a~~~~~lA~~~RsnGil~~~~~~~ 222 (304)
.+..+.++.|.-.-+....+|.+..++...+++..+|+|.+.+|++.++++.++..+++...+++.
T Consensus 57 ~~~~~~~~~p~~~~~~~gq~~~l~~~l~~~a~~~~~r~r~~~agv~lgla~~~K~~p~~~l~~ll~ 122 (241)
T PF09594_consen 57 LALLLLAFPPVLSALGLGQFDLLVAALLLLALLALRRGRPWLAGVLLGLAAAIKLYPALLLPALLI 122 (241)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334566777775555678999999999999999999999999999999999999999988775443
No 13
>PF03901 Glyco_transf_22: Alg9-like mannosyltransferase family; InterPro: IPR005599 Members of this family are glycosylphosphatidylinositol mannosyltransferase enzymes 2.4.1.- from EC [, ]. At least some members are localised in endoplasmic reticulum and involved in GPI anchor biosynthesis [, ]. In yeast the SMP3 (YOR149C) has been implemented in plasmid stability [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0006506 GPI anchor biosynthetic process, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=97.17 E-value=0.043 Score=53.86 Aligned_cols=102 Identities=21% Similarity=0.189 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHhhchhhHHHH-hhchhHHHHHHHHHHHHHHHh--------
Q 022022 123 GLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASIFYT-SIYSESLYALFSVGGLYYLMS-------- 193 (304)
Q Consensus 123 ~~~~~~v~~~~~~~a~~~Ly~L~~~~~~~~~~a~~a~ll~~~~Pasif~s-a~YtEslF~~l~~~gl~~~~~-------- 193 (304)
..+..++..++...+-..+|++.++.+ +++.|..+.++.++++...+.+ -.++|++-+.++..+++...+
T Consensus 81 ~~~~Rl~~~~~s~~~d~~~~~~~~~~~-~~~~a~~~l~l~~~s~~~~~~~~Rtlsns~e~~l~~~al~~~~~~~~~~~~~ 159 (418)
T PF03901_consen 81 FYAPRLVLALLSALSDYYLYRLVKRLF-GSSVALWALLLSLFSWFMFYYSSRTLSNSFETILVLLALYLWLRSLSRSNSS 159 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhhhhhhHHHhhhHHHHhhcccCccHHHHHHHHHHHHHHHHhhccCCCc
Confidence 344455555666677788999888887 4678888999999999988776 699999999999999988874
Q ss_pred ----hhHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Q 022022 194 ----GALNISVLWLAISGCARSNGVLNAGYFCFQTM 225 (304)
Q Consensus 194 ----~~~~~a~~~~~lA~~~RsnGil~~~~~~~~~l 225 (304)
++....+.+.+++...|++.++..++++...+
T Consensus 160 ~~~~~~~~~~~~l~~~~~~~Rpt~~~~~~pl~l~~l 195 (418)
T PF03901_consen 160 SSSKRYLLAIGLLAGLAVFFRPTSALFWLPLGLYLL 195 (418)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22456778889999999999998888766555
No 14
>COG1287 Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]
Probab=97.04 E-value=0.054 Score=57.64 Aligned_cols=122 Identities=20% Similarity=0.197 Sum_probs=84.1
Q ss_pred CCccccccccccHHHHHHHHHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHhh
Q 022022 85 YEYEQSYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCF 164 (304)
Q Consensus 85 Y~~e~~~AFfPl~P~lvr~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~a~~~Ly~L~~~~~~~~~~a~~a~ll~~~ 164 (304)
|.+-...-|-|+++.++...+..++.. .+ .....++...-.+...++++..|.+++++. |++.+..++++..+
T Consensus 79 YP~G~~i~~~pl~~~l~~~~~~~~~~~----~~--~~~~~~~~~~PailG~L~vI~vYl~~r~i~-~~~~g~~aa~ll~~ 151 (773)
T COG1287 79 YPPGSPIDFPPLFLYLTAALGLILGSI----FP--VSLETAALLFPAILGVLTVIPVYLLGRRIL-GDKTGLLAALLLAL 151 (773)
T ss_pred CCCCCCCCCCchHHHHHHHHHHHHHcc----Cc--hHHHHHHHHhhHHHhhHHHHHHHHHHHHHh-cchhhHHHHHHHHH
Confidence 555545569999999999988776421 12 234456667777888899999999999998 68999999999999
Q ss_pred chhhHHHH-hhc-----hhHHHHHHHHHHHHHHHh-----hhH----HHHHHHHHHHHhhcchh
Q 022022 165 NPASIFYT-SIY-----SESLYALFSVGGLYYLMS-----GAL----NISVLWLAISGCARSNG 213 (304)
Q Consensus 165 ~Pasif~s-a~Y-----tEslF~~l~~~gl~~~~~-----~~~----~~a~~~~~lA~~~RsnG 213 (304)
.|+-+.=+ +.+ .|.++..+++.++....+ ++. .+||+..++..++=+..
T Consensus 152 ~p~~~~rt~~G~~d~~~~~~~~~~~~l~~~~~aL~~~~~~~~~~~~~~lag~~~~l~~~sW~g~ 215 (773)
T COG1287 152 APGYLSRTVAGFYDTDMFELLLPLFALFFFLLALKAAKKLKKPVIYALLAGLALGLLALAWGGY 215 (773)
T ss_pred hhHHHHHhhcCccCCCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHhCcH
Confidence 99933333 222 455666666666555544 132 35667777777665553
No 15
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.048 Score=56.82 Aligned_cols=199 Identities=16% Similarity=0.126 Sum_probs=133.4
Q ss_pred ccccHHHHHHHhhcCC--CccccccccccHHHHHHHHHHhhhcc--cc-cccchh---hhHHHHHHHHHHHHHHHHHHHH
Q 022022 70 IVWDSVYFVRIAQCGY--EYEQSYAFLPLLPAFTHLLSRSVLAP--LI-GVIGYR---AVLGLAGYIVSNVAFLFAAVYF 141 (304)
Q Consensus 70 ~~WDa~~f~~IA~~GY--~~e~~~AFfPl~P~lvr~~~~~~~~~--l~-~~~~~~---~~~~~~~~~v~~~~~~~a~~~L 141 (304)
.-||-.||=+-+..=- ++.++.- .|+--+++...+.+.+.. .. ...|.. ..-......+|..++.+.+.++
T Consensus 59 VVwDE~HfGkf~S~Yl~~~ff~DvH-PPlgKmL~al~g~L~GydG~f~f~~~g~~~~~~~~y~~mR~f~a~lgsl~vp~~ 137 (723)
T KOG3359|consen 59 VVWDEAHFGKFASYYLNNIFFFDVH-PPLGKMLIALVGYLAGYDGSFDFQSIGEYYPNGVPYVGMRLFSALLGSLTVPLA 137 (723)
T ss_pred EEEecccccchHHHHhcCceeeccC-chHHHHHHHHHHHHhCCCCCccccCCCccCCCCCchHhHHHHHHHHHhHHHHHH
Confidence 6799988887775211 1223333 677777777777664310 00 011101 1123556778888888889999
Q ss_pred HHHHHHHhCChhHHHHHHHHHhhchhhHHHH-hhchhHHHHHHHHHHHHHHHhhh----------H----HHHHHHHHHH
Q 022022 142 YRLSVMILKDPDAALCASLLFCFNPASIFYT-SIYSESLYALFSVGGLYYLMSGA----------L----NISVLWLAIS 206 (304)
Q Consensus 142 y~L~~~~~~~~~~a~~a~ll~~~~Pasif~s-a~YtEslF~~l~~~gl~~~~~~~----------~----~~a~~~~~lA 206 (304)
|...++...+...|..+++++++==+-+-.+ -.--||+..++..+++|.+.|-. | .+.|+..|.|
T Consensus 138 y~t~~~~~~s~~aa~l~allv~~dns~~T~sr~ILLDs~Llff~~~~~y~~~r~~~~~~~pfs~~W~~wL~~tGvsLgca 217 (723)
T KOG3359|consen 138 YLTLKELGFSRLAAALAALLVLFDNSLVTLSRFILLDSMLLFFMAAAVYCFVRFYTQRKRPFSLRWWKWLLLTGVSLGCA 217 (723)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhhhe
Confidence 9999888777778888888888777766665 57789999999888888876421 2 2578889999
Q ss_pred HhhcchhhHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcc
Q 022022 207 GCARSNGVLNAGYFCFQTMHQAYDALFLKKRHFL-AMWILVCGALRCICIFAPFISFQVYGYFNMC 271 (304)
Q Consensus 207 ~~~RsnGil~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~iv~~P~~~~q~~~y~~fC 271 (304)
.-++=.|++..+.++...+++++...-..+.+.+ .+|+++.-++ ++++.|+.+|-..=|..|-
T Consensus 218 iSvK~vGlft~~~Vgl~~v~~LW~Ll~D~~~s~~~~~kh~~ar~~--~LI~iP~~iYl~~F~vHf~ 281 (723)
T KOG3359|consen 218 ISVKYVGLFTIALVGLYTVRELWCLLGDLGLSIKQIVKHLLARLF--FLIGIPFLIYLLFFYVHFS 281 (723)
T ss_pred eehhhhhHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888888887754332333222 3556554433 5667899888766555555
No 16
>PF02516 STT3: Oligosaccharyl transferase STT3 subunit; InterPro: IPR003674 N-linked glycosylation is a ubiquitous protein modification, and is essential for viability in eukaryotic cells. A lipid-linked core-oligosaccharide is assembled at the membrane of the endoplasmic reticulum and transferred to selected asparagine residues of nascent polypeptide chains by the oligosaccharyl transferase (OTase) complex []. This family consists of the oligsacharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosccharyl transferase (OTase) complex of proteins and is required for its activity [].; GO: 0004576 oligosaccharyl transferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 3AAG_B 2ZAI_D 2ZAG_A 3RCE_A.
Probab=96.98 E-value=0.027 Score=56.00 Aligned_cols=136 Identities=17% Similarity=0.190 Sum_probs=74.5
Q ss_pred CCCccccccccccHHHHHHHHHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHh
Q 022022 84 GYEYEQSYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFC 163 (304)
Q Consensus 84 GY~~e~~~AFfPl~P~lvr~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~a~~~Ly~L~~~~~~~~~~a~~a~ll~~ 163 (304)
.|.+-++.-+.|++|.+.-.+...+.. .+.. ....++..+--+.+.+.++..|.++++. +|++.|..|+++.+
T Consensus 61 ~yP~G~~i~~~pl~~~l~~~~~~~~~~-----~~~~-~l~~v~~~~ppvl~~L~vi~~y~~~~~~-~~~~~Gl~aA~l~a 133 (483)
T PF02516_consen 61 WYPWGRPIDWPPLFPYLTAAFYAILGG-----FGPV-SLYEVAFWLPPVLGALTVIPVYLLGRRL-GGRKAGLLAAFLLA 133 (483)
T ss_dssp ---TTS---TT-HHHHHHHHHHHS-SS------HH-----HHHHHHHHHHGGGGHHHHHHHHHHT-T-HHHHHHHHHHHT
T ss_pred cCCCCCccCcccHHHHHHHHHHHHHHH-----hcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 455555567889999997666665421 1111 1223334444556667778899999665 58999999999999
Q ss_pred hchhhHHHH-hhc--h---hHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHhhcchh-hHHHHHHHHHHHH
Q 022022 164 FNPASIFYT-SIY--S---ESLYALFSVGGLYYLMSGAL------NISVLWLAISGCARSNG-VLNAGYFCFQTMH 226 (304)
Q Consensus 164 ~~Pasif~s-a~Y--t---EslF~~l~~~gl~~~~~~~~------~~a~~~~~lA~~~RsnG-il~~~~~~~~~l~ 226 (304)
+.|+-+.=| ++| + |.+|.++++..+....+++. .++|+..++...+=..+ ++..++++...+.
T Consensus 134 ~~p~~l~RT~~G~~D~~~~~~~f~~l~~~~~~~a~~~~~~~~~~~~laGl~~~l~~~~W~g~~~~~~~~~~~~~~~ 209 (483)
T PF02516_consen 134 ISPGYLSRTMAGFYDHHMLELFFPLLIIYFFLLALKSAKRPLIYAVLAGLALGLYALAWGGYQVFLLIFILLFVIY 209 (483)
T ss_dssp TSHHHHHTSSTT--SGGGGTTHHHHHHHHHHHHHHHH------THHHHHHHHHHHHHHHS-GGHHHHHHHHHHHHH
T ss_pred HhHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 999943323 454 3 45555555444443333331 35667777777666666 5555555554443
No 17
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.032 Score=57.92 Aligned_cols=199 Identities=16% Similarity=0.125 Sum_probs=124.8
Q ss_pred ccccHHHHHHHhhcC--CCccccccccccHHHHHHHHHHhhhc--cccc-ccc-hh---hhHHHHHHHHHHHHHHHHHHH
Q 022022 70 IVWDSVYFVRIAQCG--YEYEQSYAFLPLLPAFTHLLSRSVLA--PLIG-VIG-YR---AVLGLAGYIVSNVAFLFAAVY 140 (304)
Q Consensus 70 ~~WDa~~f~~IA~~G--Y~~e~~~AFfPl~P~lvr~~~~~~~~--~l~~-~~~-~~---~~~~~~~~~v~~~~~~~a~~~ 140 (304)
.-||..||-+-|.+= .++.++. -.|+--+++...+.+.+. +.+- ..| .. ..-...-..+|.+.+.+.+.+
T Consensus 48 VVfdE~hfgkFaS~Yl~~~~~fDv-HPPL~kml~al~~~L~g~~g~f~f~~~g~~~~~~~~~y~~mR~f~A~lgsl~vpl 126 (699)
T COG1928 48 VVFDEAHFGKFASYYLNGTPFFDV-HPPLGKMLIALVGGLEGYDPPFDFQLIGLTEYPFGYNYVGMRFFNALLGSLTVPL 126 (699)
T ss_pred EEEeeeeeccchHHhhcCCccccc-CCcHHHHHHHhhhhhhccCCCcccccCCcccccCCCChHHHHHHHHHHHhHHHHH
Confidence 679999998888631 1222332 345555555554444310 1100 000 00 012355677888888888999
Q ss_pred HHHHHHHHhCChhHHHHHHHHHhhchhhHHHH-hhchhHHHHHHHHHHHHHHHh--------hhH----HHHHHHHHHHH
Q 022022 141 FYRLSVMILKDPDAALCASLLFCFNPASIFYT-SIYSESLYALFSVGGLYYLMS--------GAL----NISVLWLAISG 207 (304)
Q Consensus 141 Ly~L~~~~~~~~~~a~~a~ll~~~~Pasif~s-a~YtEslF~~l~~~gl~~~~~--------~~~----~~a~~~~~lA~ 207 (304)
+|...++...+...+.+++++.++==+-+..+ -.--|++..++..++.|.+.+ ++| .+.|+..|.+.
T Consensus 127 ~y~t~r~~~~s~l~~~l~~llv~~dn~~~t~sR~ILLDs~LlfF~~~~~y~~~r~~~~~p~s~~w~~~Ll~tGisLGcai 206 (699)
T COG1928 127 VYLIARRIGYSRLVAALAGLLVAFDNSFVTESRFILLDSFLLFFIVAAAYCFLRFHRQQPFSRRWLKWLLLTGISLGCAI 206 (699)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHhcceeeeEE
Confidence 99999998877778888888888776666565 577888888887777777753 222 25678888899
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcc
Q 022022 208 CARSNGVLNAGYFCFQTMHQAYDALFLKKRHFL-AMWILVCGALRCICIFAPFISFQVYGYFNMC 271 (304)
Q Consensus 208 ~~RsnGil~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~iv~~P~~~~q~~~y~~fC 271 (304)
.+|=+|++..++++...+.+.+....-++.+.+ .+|+.+.-+. .++..|+.++-..=|..|=
T Consensus 207 S~KwvGlft~~~vgl~~v~~lW~ll~dk~~s~~~~~kh~~~r~f--~Li~iP~~iyl~~F~vhf~ 269 (699)
T COG1928 207 SVKWVGLFTTGVVGLLAVYELWSLLYDKSVSWKQIIKHWLARFF--GLIIIPFDIYLLSFYVHFN 269 (699)
T ss_pred EeeehhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHhheee
Confidence 999999998888877777776643322222221 2455554433 4566788877654334444
No 18
>PLN02816 mannosyltransferase
Probab=96.80 E-value=0.52 Score=48.33 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHhhchhhHHH-HhhchhHHHHHHHHHHHHHHH---------h
Q 022022 124 LAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASIFY-TSIYSESLYALFSVGGLYYLM---------S 193 (304)
Q Consensus 124 ~~~~~v~~~~~~~a~~~Ly~L~~~~~~~~~~a~~a~ll~~~~Pasif~-sa~YtEslF~~l~~~gl~~~~---------~ 193 (304)
.+--++..+...++-..+|++.++.++ ++.|..+.++.+.+|-..++ +-.++.++-+.++..+++..- .
T Consensus 119 ~~pRl~~al~sal~D~~l~kl~~~~~g-~~~A~~~L~~sl~swf~~y~~sRTfSNslEt~Lt~lAL~~w~~~~~~~~~~~ 197 (546)
T PLN02816 119 KAPRLMQSIFSAIGDLYLYKLSDALYG-GNVATWSLFCQMANWFIFFCLNRTFSNCLETVLTIMGLYYWPCIRDSSIDYP 197 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHHHHHhhcccccccccc
Confidence 333444445555566789999988884 56777777777788877776 579999999999999998752 1
Q ss_pred hhHHHHHHHHHHHHhhcchhhHHHHHHHH
Q 022022 194 GALNISVLWLAISGCARSNGVLNAGYFCF 222 (304)
Q Consensus 194 ~~~~~a~~~~~lA~~~RsnGil~~~~~~~ 222 (304)
.+.-.+-.+.++|+..||+.++...+++.
T Consensus 198 ~~~~~~L~la~la~~iRPt~ailwl~l~l 226 (546)
T PLN02816 198 VNRKWGLVIAALACAIRPTSAVIWLYVGM 226 (546)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223445666888889998887766654
No 19
>TIGR03459 crt_membr carotene biosynthesis associated membrane protein. This model represents a family of hydrophobic and presumed membrane proteins. The genes encoding these proteins are syntenically associated with (found proximal to) genes of carotene biosynthesis ususally including phytoene synthase (crtB), phytoene dehydrogenase (crtI) and geranylgeranyl pyrophosphate synthase (ispA).
Probab=96.55 E-value=0.16 Score=50.80 Aligned_cols=129 Identities=12% Similarity=0.105 Sum_probs=94.4
Q ss_pred cccccccHHHHHHHHHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHhhchhhH
Q 022022 90 SYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASI 169 (304)
Q Consensus 90 ~~AFfPl~P~lvr~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~a~~~Ly~L~~~~~~~~~~a~~a~ll~~~~Pasi 169 (304)
.--+-|+.=.+-+.++...++.. ..-.+.--+++.+..++.+..+-||.++.-.|++. +..+...||--+
T Consensus 140 ~aPYGPl~l~i~~~v~~l~g~~i-------~~~v~~~Rl~~l~g~~l~~w~~~rLar~~g~~~~~---AlWL~~~NPLvi 209 (470)
T TIGR03459 140 TTPYGPLHLLVGQAITTVTGDNV-------TAGTLAFKLLSLPGLAVMVWAVPKLATHLGGNPTV---ALWLGVLNPLVV 209 (470)
T ss_pred CCCCChHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH---HHHHHHcCchhh
Confidence 34466776666676666543211 01123344555556666677788888776555544 444567899998
Q ss_pred HHH--hhchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Q 022022 170 FYT--SIYSESLYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYFCFQTMHQA 228 (304)
Q Consensus 170 f~s--a~YtEslF~~l~~~gl~~~~~~~~~~a~~~~~lA~~~RsnGil~~~~~~~~~l~~~ 228 (304)
+.- ..-.|++...+...|+++..|+++..++++.++|..++.+.++..+|+.+.++++.
T Consensus 210 ihlvgg~HnealM~gl~l~gl~~~~r~~~~~g~vli~~a~~VK~~a~l~Lpf~~~~~~~~~ 270 (470)
T TIGR03459 210 IHLIGGMHNEMLMVGLVSAGILLALKRRPVAGIALIAVAVALKATAGIALPFVVWIWVAHV 270 (470)
T ss_pred hhhhcchhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 553 58899999999999999999999999999999999999999999999888776653
No 20
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=96.53 E-value=0.43 Score=49.65 Aligned_cols=84 Identities=19% Similarity=0.272 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHhhchhhH---HHHhhchhHHHHHH---HHHHHHHHHh-h---h
Q 022022 126 GYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASI---FYTSIYSESLYALF---SVGGLYYLMS-G---A 195 (304)
Q Consensus 126 ~~~v~~~~~~~a~~~Ly~L~~~~~~~~~~a~~a~ll~~~~Pasi---f~sa~YtEslF~~l---~~~gl~~~~~-~---~ 195 (304)
-.++-.++..+.++..|++.++..+ +..|.++++++.++|.-. +....++|.+-..+ .+++++.+.+ + .
T Consensus 26 y~l~~~L~~~l~~~~~Y~~~R~~~~-~~~A~l~aiLyl~~py~l~~~y~rgni~e~lA~~llPlvll~~~~~~~~~~~r~ 104 (616)
T PF10131_consen 26 YKLFIFLAFFLGGLGMYFLGRRLGR-RKAAILAAILYLFSPYHLRNIYWRGNIPETLAFALLPLVLLFLYRFIKKRKYRY 104 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHhHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 3344456667778889999999775 889999999999999765 33478999964333 3344443332 2 2
Q ss_pred HHHHHHHHHHHHhhc
Q 022022 196 LNISVLWLAISGCAR 210 (304)
Q Consensus 196 ~~~a~~~~~lA~~~R 210 (304)
+...++.+++..++.
T Consensus 105 ~~~lAl~~all~lsH 119 (616)
T PF10131_consen 105 WILLALSMALLALSH 119 (616)
T ss_pred HHHHHHHHHHHHHHh
Confidence 345667777778777
No 21
>PF06728 PIG-U: GPI transamidase subunit PIG-U; InterPro: IPR009600 Many eukaryotic proteins are anchored to the cell surface via glycosylphosphatidylinositol (GPI), which is posttranslationally attached to the C terminus by GPI transamidase. The mammalian GPI transamidase is a complex of at least four subunits, GPI8, GAA1, PIG-S, and PIG-T. PIG-U is thought to represent a fifth subunit in this complex and may be involved in the recognition of either the GPI attachment signal or the lipid portion of GPI [].; GO: 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=96.45 E-value=0.29 Score=47.84 Aligned_cols=100 Identities=18% Similarity=0.260 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCh-----------hHHHHHHHHHhhchhhHHHHh-hchhHHHHHHHHHHHHHHHhh
Q 022022 127 YIVSNVAFLFAAVYFYRLSVMILKDP-----------DAALCASLLFCFNPASIFYTS-IYSESLYALFSVGGLYYLMSG 194 (304)
Q Consensus 127 ~~v~~~~~~~a~~~Ly~L~~~~~~~~-----------~~a~~a~ll~~~~Pasif~sa-~YtEslF~~l~~~gl~~~~~~ 194 (304)
-++-.++-++++..++++++...+++ ......+.+|.+||-++.... .=|.++-.++....++...++
T Consensus 84 ~llf~~~Dl~~A~~L~~i~~~~~~~~~~~~~~~~~~~~~~~lv~~~YLfNP~tIlscva~ST~~f~nl~i~~sl~~a~~g 163 (382)
T PF06728_consen 84 SLLFILVDLLIAWLLYRIAKSYQKQESKRQKSPNEKSSSPWLVAAFYLFNPLTILSCVALSTTVFTNLFILLSLYFAVKG 163 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCchhcccchHHHHHHHHHCHHHHHHHHhcccHHHHHHHHHHHHHHHHcC
Confidence 34445778888999999986544221 356778899999999998764 446666677778888888999
Q ss_pred hHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Q 022022 195 ALNISVLWLAISGCARSNGVLNAGYFCFQTMH 226 (304)
Q Consensus 195 ~~~~a~~~~~lA~~~RsnGil~~~~~~~~~l~ 226 (304)
+...+++..++|+..+..-+.+..+++....+
T Consensus 164 ~~~~s~i~lAlatylSlYpi~Ll~Plll~l~~ 195 (382)
T PF06728_consen 164 NVFLSAISLALATYLSLYPILLLPPLLLLLYS 195 (382)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999888776654443
No 22
>KOG3893 consensus Mannosyltransferase [Carbohydrate transport and metabolism]
Probab=95.50 E-value=0.12 Score=49.17 Aligned_cols=94 Identities=17% Similarity=0.193 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhCChhHHHHHHHHHhhchhhHHHH-hhchhHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022022 126 GYIVSNVAFLFAAVYFYRLSV-MILKDPDAALCASLLFCFNPASIFYT-SIYSESLYALFSVGGLYYLMSGALNISVLWL 203 (304)
Q Consensus 126 ~~~v~~~~~~~a~~~Ly~L~~-~~~~~~~~a~~a~ll~~~~Pasif~s-a~YtEslF~~l~~~gl~~~~~~~~~~a~~~~ 203 (304)
|-++=.++-++.+.++|||.. +-. ++|.|...+..+..||-....| -+=.||.-+++.+..++++.|+++..||+.-
T Consensus 98 GK~Lf~~~Dll~a~L~~kLl~~~~i-~~~~a~~~~~fWLlNPl~aiIStRGNaesi~~~lvi~~lyllqK~~v~~A~l~~ 176 (405)
T KOG3893|consen 98 GKLLFAIFDLLIATLIYKLLHMRSI-SRKQALIYASFWLLNPLTAIISTRGNAESIVAFLVILTLYLLQKSEVFLAGLAH 176 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc-chhhhhHhhhhhhcCchheeeecCCchHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 334445677788889999976 444 6788999999999999988776 5899999999999999999999999999999
Q ss_pred HHHHhhcchhhHHHHHH
Q 022022 204 AISGCARSNGVLNAGYF 220 (304)
Q Consensus 204 ~lA~~~RsnGil~~~~~ 220 (304)
|+|.-.|---+.....+
T Consensus 177 GlaIh~KIYPliY~l~i 193 (405)
T KOG3893|consen 177 GLAIHLKIYPLIYSLAI 193 (405)
T ss_pred hheeeeEechHHhhhhh
Confidence 99999887777766544
No 23
>COG4346 Predicted membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.4 Score=46.16 Aligned_cols=90 Identities=18% Similarity=0.200 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHhhchhhHHHH-hhchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 022022 132 VAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASIFYT-SIYSESLYALFSVGGLYYLMSGALNISVLWLAISGCAR 210 (304)
Q Consensus 132 ~~~~~a~~~Ly~L~~~~~~~~~~a~~a~ll~~~~Pasif~s-a~YtEslF~~l~~~gl~~~~~~~~~~a~~~~~lA~~~R 210 (304)
+.+.+..+++|..++++-+++-.+.+++++-++-|--.-+. .+.-+-=-++++.+.++++..+|...|++..|+|..++
T Consensus 163 Ie~~liliiv~~~~~ki~~~~la~~~aA~~~alDp~l~amg~VAMLDIhvaFFtaL~~~fl~~~R~l~sgiAlGLAAs~K 242 (438)
T COG4346 163 IEGALILIIVYFVAYKIARSPLAGLIAALLAALDPLLRAMGGVAMLDIHVAFFTALFMYFLANDRPLWSGIALGLAASVK 242 (438)
T ss_pred HhhhHHHHHHHHHHHHHhcCchHHHHHHHHHhhCcHHHHhcchhHHHHHHHHHHHHHHHHHhcCCeehHHHHHHHHHHHh
Confidence 44555566677777777777778888999999888766554 57777777888999999999999999999999999999
Q ss_pred chhhHHHHHHHH
Q 022022 211 SNGVLNAGYFCF 222 (304)
Q Consensus 211 snGil~~~~~~~ 222 (304)
-.|-+ +..+++
T Consensus 243 ~SG~~-vfpil~ 253 (438)
T COG4346 243 LSGAF-VFPILW 253 (438)
T ss_pred hcccc-hHHHHH
Confidence 88866 334444
No 24
>COG3463 Predicted membrane protein [Function unknown]
Probab=95.33 E-value=0.21 Score=49.26 Aligned_cols=94 Identities=16% Similarity=0.229 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHhhchhhH--HHHhhchhHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022022 125 AGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASI--FYTSIYSESLYALFSVGGLYYLMSGALNISVLW 202 (304)
Q Consensus 125 ~~~~v~~~~~~~a~~~Ly~L~~~~~~~~~~a~~a~ll~~~~Pasi--f~sa~YtEslF~~l~~~gl~~~~~~~~~~a~~~ 202 (304)
.-+++..++-..++..+|+++++.+++++.|..-++++.+||.-. -.----+|+++..+.++++++++|++|-+.-+.
T Consensus 89 ~Lll~Q~i~ials~~p~y~lA~eil~~E~~al~isilYll~p~i~gi~~FDFH~m~~avp~~~~a~~f~~r~k~~l~li~ 168 (458)
T COG3463 89 TLLLIQAIAIALSSLPIYLLAKEILNGEKEALAISILYLLNPYIEGINLFDFHPMAFAVPLFLLAYYFLKRKKWKLFLIF 168 (458)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhcccHHHHHHHHHHHhchhccCchhhhcchHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 345567777788899999999999988999999999999999743 223466899999999999999999999888888
Q ss_pred HHHHHhhcchhhHHHH
Q 022022 203 LAISGCARSNGVLNAG 218 (304)
Q Consensus 203 ~~lA~~~RsnGil~~~ 218 (304)
..+-.++.+...+.++
T Consensus 169 lvlIl~tk~~a~liiI 184 (458)
T COG3463 169 LVLILLTKEDAFLIII 184 (458)
T ss_pred HHHHHHHhcccHHHHH
Confidence 8888888888555444
No 25
>PF04922 DIE2_ALG10: DIE2/ALG10 family; InterPro: IPR007006 Members of this entry are glycosyltransferases, belonging to the ALG10 family. The majority of the members are annotated as alpha-1,2 glucosyltransferas. The ALG10 protein from Saccharomyces cerevisiae (Baker's yeast) encodes the alpha-1,2 glucosyltransferase of the endoplasmic reticulum. This protein has been characterised in Rat as potassium channel regulator 1 [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane
Probab=95.12 E-value=1.5 Score=42.95 Aligned_cols=71 Identities=15% Similarity=0.194 Sum_probs=59.8
Q ss_pred hHHHHHHHHHhhchhhHHHH-hhchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 022022 153 DAALCASLLFCFNPASIFYT-SIYSESLYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYFCFQ 223 (304)
Q Consensus 153 ~~a~~a~ll~~~~Pasif~s-a~YtEslF~~l~~~gl~~~~~~~~~~a~~~~~lA~~~RsnGil~~~~~~~~ 223 (304)
+.+...++-.++.|.-.|++ --||+...+++.+.+.+...+++.+.|++.+.+|..+|-+-|+..+++.-.
T Consensus 91 ~~~~~~a~~ialfPllfFFsfLYYTDv~St~~VL~~yl~~~~~~~~~sal~g~~sv~fRQTNIvWv~f~~~~ 162 (379)
T PF04922_consen 91 RKAILSALNIALFPLLFFFSFLYYTDVWSTTFVLLMYLASLKRRHWLSALFGLLSVLFRQTNIVWVAFFAGG 162 (379)
T ss_pred HHHHHHHHHHHHhhHHHHhhHHHHhcHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 34555677888889888887 688999999998888877888888889999999999999999988876654
No 26
>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria. The function is not known.
Probab=94.87 E-value=2 Score=37.74 Aligned_cols=98 Identities=13% Similarity=0.156 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------hhHHHHHHHHHhhchhhHHHHhhchhH-----HHHHHHH
Q 022022 124 LAGYIVSNVAFLFAAVYFYRLSVMILKD-------------PDAALCASLLFCFNPASIFYTSIYSES-----LYALFSV 185 (304)
Q Consensus 124 ~~~~~v~~~~~~~a~~~Ly~L~~~~~~~-------------~~~a~~a~ll~~~~Pasif~sa~YtEs-----lF~~l~~ 185 (304)
...-++|.+++.+++.++|....++.++ ...+..+++.+.++|.--+. +.=.|. +|..+.+
T Consensus 41 ~~vNl~Sal~sA~tv~~l~~~~~~l~~~~~~~~~~~~~~~~~~a~lv~al~fafS~sfW~~-Av~aEVYal~~l~~al~~ 119 (178)
T PF11028_consen 41 WRVNLLSALSSALTVLFLFWSITRLLRKLPEEPSTAQTIAILGAGLVGALAFAFSDSFWFQ-AVEAEVYALSSLFTALLL 119 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3334677788888899999998888754 24567788999999876544 444442 2333333
Q ss_pred HHHHHHHhh-------hH-HHHHHHHHHHHhhcchhhHHHHHHHH
Q 022022 186 GGLYYLMSG-------AL-NISVLWLAISGCARSNGVLNAGYFCF 222 (304)
Q Consensus 186 ~gl~~~~~~-------~~-~~a~~~~~lA~~~RsnGil~~~~~~~ 222 (304)
..++-.+++ |+ .+.+.+.|++....-..++..+.+++
T Consensus 120 ~l~l~w~~~~~~~~~~r~l~l~afl~GLs~g~H~~~ll~lP~~~~ 164 (178)
T PF11028_consen 120 WLLLKWEREADEPRSDRWLLLIAFLCGLSLGVHLLNLLALPAIAL 164 (178)
T ss_pred HHHHHHhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333322 33 35677888988888777766655444
No 27
>COG5305 Predicted membrane protein [Function unknown]
Probab=94.57 E-value=3.4 Score=42.38 Aligned_cols=82 Identities=22% Similarity=0.244 Sum_probs=65.8
Q ss_pred cccccccHHHHHHHHHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHhhchhhH
Q 022022 90 SYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASI 169 (304)
Q Consensus 90 ~~AFfPl~P~lvr~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~a~~~Ly~L~~~~~~~~~~a~~a~ll~~~~Pasi 169 (304)
.-..-|+|..+++.....++ ...++..-.+.++.+++..++|-+++..+ +++.+..++.+.+++|-.+
T Consensus 94 ~~~~~PLYfll~h~W~~lF~-----------~s~~~~Rsls~L~~~~ai~~~y~l~r~l~-~~~~a~la~~~~AisP~~i 161 (552)
T COG5305 94 LLVHPPLYFLLAHFWMALFG-----------NSLLASRSLSALLSALAIPLVYWLGRELF-GSTTALLAAALMAISPFHI 161 (552)
T ss_pred cCCCCCeeehHHHHHHHHhc-----------hHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHccChHHH
Confidence 45667899999999988763 23567788888999999999999999999 5788889999999999999
Q ss_pred HHH---hhchhHHHHHH
Q 022022 170 FYT---SIYSESLYALF 183 (304)
Q Consensus 170 f~s---a~YtEslF~~l 183 (304)
+.+ -.|+=+.-..+
T Consensus 162 ~~~qe~R~y~L~~~~~l 178 (552)
T COG5305 162 FYSQEARSYALAVATTL 178 (552)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 886 35655544443
No 28
>PF03155 Alg6_Alg8: ALG6, ALG8 glycosyltransferase family; InterPro: IPR004856 N-linked (asparagine-linked) glycosylation of proteins is mediated by a highly conserved pathway in eukaryotes, in which a lipid (dolichol phosphate)-linked oligosaccharide is assembled at the endoplasmic reticulum membrane prior to the transfer of the oligosaccharide moiety to the target asparagine residues. This oligosaccharide is composed of Glc(3)Man(9)GlcNAc(2). The addition of the three glucose residues is the final series of steps in the synthesis of the oligosaccharide precursor. Alg6 transfers the first glucose residue, and Alg8 transfers the second one []. In the human alg6 gene, a C-T transition, which causes Ala333 to be replaced with Val, has been identified as the cause of a congenital disorder of glycosylation, designated as type Ic OMIM:603147 []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0005789 endoplasmic reticulum membrane
Probab=94.12 E-value=1.4 Score=44.26 Aligned_cols=107 Identities=16% Similarity=0.190 Sum_probs=74.9
Q ss_pred ChhHHHHHHHHHhhchhhHHHH---hhchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 022022 151 DPDAALCASLLFCFNPASIFYT---SIYSESLYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYFCFQTMHQ 227 (304)
Q Consensus 151 ~~~~a~~a~ll~~~~Pasif~s---a~YtEslF~~l~~~gl~~~~~~~~~~a~~~~~lA~~~RsnGil~~~~~~~~~l~~ 227 (304)
+++....+.++..++|+-+..- =-|.--+..++ ++++....+++...++++|+++-..+-..+-.+..+....++.
T Consensus 131 ~~~~~~~~~~~~l~~PgLilIDH~HFQYN~~~lGl~-l~si~~~~~~~~l~~a~~F~~~Ln~Kqm~LY~Ap~~f~yLL~~ 209 (469)
T PF03155_consen 131 SSKQRFIALLLILLNPGLILIDHGHFQYNGFLLGLL-LLSIAALIRGRYLLGAILFSLLLNFKQMFLYYAPAFFVYLLGS 209 (469)
T ss_pred chhHHHHHHHHHHHCchHHhhhhhhhhHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667788888999988542 46766555554 6777778899999999999999999999999998877777775
Q ss_pred HHHHHHHhhh---HH-HHHHHHHHHHHHHHHHHHHHHHH
Q 022022 228 AYDALFLKKR---HF-LAMWILVCGALRCICIFAPFISF 262 (304)
Q Consensus 228 ~~~~~~~~~~---~~-~~~~~~~~~~l~~~iv~~P~~~~ 262 (304)
.. ++++ .. +..+..+..+...+++..||+..
T Consensus 210 c~----~~~~~~~~~~~~~~lg~~Vi~~f~~~~~PF~~~ 244 (469)
T PF03155_consen 210 CF----QRKSFRFSIKRLIKLGIVVIATFALSFGPFLYS 244 (469)
T ss_pred Hc----CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 32 1211 11 12334444556667788999743
No 29
>PF05007 Mannosyl_trans: Mannosyltransferase (PIG-M); InterPro: IPR007704 PIG-M has a DXD motif. The DXD motif is found in many glycosyltransferases that utilise nucleotide sugars. It is thought that the motif is involved in the binding of a manganese ion that is required for association of the enzymes with nucleotide sugar substrates [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=90.87 E-value=1.5 Score=40.83 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=44.7
Q ss_pred hchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q 022022 174 IYSESLYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYFCFQT 224 (304)
Q Consensus 174 ~YtEslF~~l~~~gl~~~~~~~~~~a~~~~~lA~~~RsnGil~~~~~~~~~ 224 (304)
+=+||+-.++.++.++++.++|+..||++.|+|.-.|-=-+..+..+....
T Consensus 5 GnaEsl~~~lVl~~l~~l~~~~~~~Aa~~lGlaVHfKIYPiIY~~~~~l~l 55 (259)
T PF05007_consen 5 GNAESLLCFLVLLTLYFLLKGRWFLAAILLGLAVHFKIYPIIYALPILLYL 55 (259)
T ss_pred cchHHHHHHHHHHHHHHHHcCChhHHHHHhhHHHHhhhccHHHHHHHHHHH
Confidence 447999999999999999999999999999999999988788777766543
No 30
>PF05208 ALG3: ALG3 protein; InterPro: IPR007873 The formation of N-glycosidic linkages of glycoproteins involves the ordered assembly of the common Glc3Man9GlcNAc2 core-oligosaccharide on the lipid carrier dolichyl pyrophosphate. Whereas early mannosylation steps occur on the cytoplasmic side of the endoplasmic reticulum with GDP-Man as donor, the final reactions from Man5GlcNAc2-PP-Dol to Man9GlcNAc2-PP-Dol on the lumenal side use Dol-P-Man []. The ALG3 gene encodes the Dol-P-Man:Man5GlcNAc2-PP-Dol mannosyltransferase.; GO: 0016758 transferase activity, transferring hexosyl groups, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=90.61 E-value=2.9 Score=40.71 Aligned_cols=104 Identities=17% Similarity=0.327 Sum_probs=71.3
Q ss_pred HHHHHhhc--hhhHHHHhhchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHh
Q 022022 158 ASLLFCFN--PASIFYTSIYSESLYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYFCFQTMHQAYDALFLK 235 (304)
Q Consensus 158 a~ll~~~~--Pasif~sa~YtEslF~~l~~~gl~~~~~~~~~~a~~~~~lA~~~RsnGil~~~~~~~~~l~~~~~~~~~~ 235 (304)
...+.|++ =-|||.--...+..-+++...++++..++||.++++++++|...+-|.++.++.++...+..
T Consensus 109 ~~~ll~lSkRlHSI~vLRlFND~~a~~~~~~ai~~~~~~~w~~g~~~yS~avSIKMN~LL~~Pall~~~l~~-------- 180 (368)
T PF05208_consen 109 LLILLCLSKRLHSIFVLRLFNDCFAMLFLYAAILLFQRRRWLLGSLLYSLAVSIKMNALLFAPALLVLLLQS-------- 180 (368)
T ss_pred HHHHHHHHHHHHHhhhhheecHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHc--------
Confidence 34444444 23566666778888888888999999999999999999999999999999987765543321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 022022 236 KRHFLAMWILVCGALRCICIFAPFISFQVYGYFN 269 (304)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~iv~~P~~~~q~~~y~~ 269 (304)
....+.+..+....+.=+++..||...+-.+|..
T Consensus 181 ~g~~~~~~~l~v~~~vQvllg~PFL~~~p~~Yl~ 214 (368)
T PF05208_consen 181 LGLLKTLWYLAVCALVQVLLGLPFLLTNPWSYLS 214 (368)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhHHHHhCHHHHHH
Confidence 1111122333333333366889999887666654
No 31
>KOG2762 consensus Mannosyltransferase [Carbohydrate transport and metabolism]
Probab=90.05 E-value=5.5 Score=38.68 Aligned_cols=108 Identities=14% Similarity=0.237 Sum_probs=75.7
Q ss_pred HHHHHHHHHhhc--hhhHHHHhhchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHH
Q 022022 154 AALCASLLFCFN--PASIFYTSIYSESLYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYFCFQTMHQAYDA 231 (304)
Q Consensus 154 ~a~~a~ll~~~~--Pasif~sa~YtEslF~~l~~~gl~~~~~~~~~~a~~~~~lA~~~RsnGil~~~~~~~~~l~~~~~~ 231 (304)
.-.....+.|++ --|||.--...+++-+++....+....++||..+++.+++|..++-|.++.+..+++..+.+.
T Consensus 133 vPp~vlvL~~lskRiHSIfVLRLFND~fa~lll~~~i~~~l~qkw~~gs~~fSlAvSVKMNvLLyaPall~~lL~~~--- 209 (429)
T KOG2762|consen 133 VPPWVLVLLCLSKRIHSIFVLRLFNDPFAMLLLYVAILLFLKQKWLVGSIFFSLAVSVKMNVLLYAPALLLLLLQNL--- 209 (429)
T ss_pred CChHHHHHHHHHHHHHHhhhhHHhcchHHHHHHHHHHHHHHHHHHHhHhhhheeehhhhhhhHHHHHHHHHHHHHhc---
Confidence 334444455554 346666677888888999999999888999999999999999999999999987776554432
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 022022 232 LFLKKRHFLAMWILVCGALRCICIFAPFISFQVYGYFN 269 (304)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~iv~~P~~~~q~~~y~~ 269 (304)
.-++ .+..+..+++.=+.+..||.++....|.+
T Consensus 210 --~~~~---tl~~L~v~~~vQilvg~PFLl~~p~~Yl~ 242 (429)
T KOG2762|consen 210 --GPIG---TLLHLAVCILVQILVGLPFLLYFPSSYLT 242 (429)
T ss_pred --cHHH---HHHHHHHHHHHHHHHcCchHhhChHHHHh
Confidence 1111 12233334444466889999887666654
No 32
>KOG2576 consensus Glucosyltransferase - Alg8p [Transcription]
Probab=88.51 E-value=3.6 Score=40.55 Aligned_cols=137 Identities=16% Similarity=0.259 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHhhchhhHHHH---hhchhHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022022 126 GYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASIFYT---SIYSESLYALFSVGGLYYLMSGALNISVLW 202 (304)
Q Consensus 126 ~~~v~~~~~~~a~~~Ly~L~~~~~~~~~~a~~a~ll~~~~Pasif~s---a~YtEslF~~l~~~gl~~~~~~~~~~a~~~ 202 (304)
.++++-++.+.++--.|++++++-++++.....+.+...+|+-++.- --|.--+|..+ ++.+..+.++|.+.++..
T Consensus 104 SVIf~dll~~~~~rr~~~l~~kl~k~~~~~~~~a~ll~~s~gLlIvDhIHFQYNgfLfgil-LlSI~~l~~kr~l~~A~~ 182 (500)
T KOG2576|consen 104 SVIFSDLLLLYGLRRSYRLTSKLGKDQKQRFACAVLLLLSPGLLIVDHIHFQYNGFLFGIL-LLSIVFLKTKRYLLSAFL 182 (500)
T ss_pred hhHHHHHHHHHHHhhhhcccccCCcccccchHHHHHHHhCCCcEEEEEeeeecccHHHHHH-HHHHHHHhhhhHHHHHHH
Confidence 45666666655554588999888778888888999999999987542 47888888876 455566678889999999
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022022 203 LAISGCARSNGVLNAGYFCFQTMHQAY---DALFLKKRHFLAMWILVCGALRCICIFAPFISFQV 264 (304)
Q Consensus 203 ~~lA~~~RsnGil~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~~iv~~P~~~~q~ 264 (304)
++..-.++-.=+-.+....+..+|.-. ++.+. .+..+.+|..+..++..++...||+..|-
T Consensus 183 fsvll~FKHIflY~ApaY~vylLr~Yc~~~nn~~~-~~~~~vikL~~vv~~~F~~s~gPf~~~~q 246 (500)
T KOG2576|consen 183 FSVLLNFKHIFLYVAPAYFVYLLRNYCLTSNNVFL-ANFLNVIKLGIVVLIPFAASFGPFIYVQQ 246 (500)
T ss_pred HHHHHhhhhheeeechhHHHHHHHHHHhcccchhh-hhhhhHHHHHHHHHHHHHHHhccHHHHHH
Confidence 998888876665555544455555321 11111 11122345555555556777888875544
No 33
>KOG2642 consensus Alpha-1,2 glucosyltransferase/transcriptional activator [Posttranslational modification, protein turnover, chaperones; Transcription; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=83.72 E-value=16 Score=35.68 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=57.0
Q ss_pred HHHhhchhhHHHH-hhchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 022022 160 LLFCFNPASIFYT-SIYSESLYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYFCFQTMHQ 227 (304)
Q Consensus 160 ll~~~~Pasif~s-a~YtEslF~~l~~~gl~~~~~~~~~~a~~~~~lA~~~RsnGil~~~~~~~~~l~~ 227 (304)
.-....|.-.+++ --|||...+.+.+++.+....|..+.++..++.+.++|-+-+..+++.+...+.+
T Consensus 119 ~tl~slP~l~~fsfLfYTD~~St~~vllay~f~~~~n~~~SAfl~~~s~lfRQTNIIWa~fia~~viAs 187 (446)
T KOG2642|consen 119 STLGSLPILIFFSFLFYTDLGSTFFVLLAYLFCLYGNHKTSAFLGFCSFLFRQTNIIWAVFIAGNVIAS 187 (446)
T ss_pred hHHhhccHHHHHHHHHHHhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 3334556666665 7899999999999999999999999999999999999999999999988765543
No 34
>COG5650 Predicted integral membrane protein [Function unknown]
Probab=83.13 E-value=1.8 Score=43.88 Aligned_cols=105 Identities=13% Similarity=0.182 Sum_probs=66.5
Q ss_pred HHHHHhhchhhHHHHhhchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 022022 158 ASLLFCFNPASIFYTSIYSESLYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYFCFQTMHQAYDALFLKKR 237 (304)
Q Consensus 158 a~ll~~~~Pasif~sa~YtEslF~~l~~~gl~~~~~~~~~~a~~~~~lA~~~RsnGil~~~~~~~~~l~~~~~~~~~~~~ 237 (304)
.+.+.+.+|--.|....=.+..-+++..+++.. |+|..+||+++|+++..+..-....+++++...++ ++
T Consensus 200 ~valv~as~~v~f~v~~~~DtI~~ffla~a~v~--r~rP~lAGvl~Gls~a~K~~P~Ivl~pll~~~~ke--------yg 269 (536)
T COG5650 200 DVALVAASPLVGFAVFTVFDTIWAFFLAAALVC--RGRPKLAGVLIGLSSAFKQIPLIVLPPLLYLIYKE--------YG 269 (536)
T ss_pred eeeeeeccceEEEEEecchhHHHHHHHHHHHHh--cCCchHHHHHHHHHHHhhcCchhhHHHHHHHHHHh--------cC
Confidence 344444555111222233556666665566654 89999999999999999998888888776643321 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccC
Q 022022 238 HFLAMWILVCGALRCICIFAPFISFQVYGYFNMCL 272 (304)
Q Consensus 238 ~~~~~~~~~~~~l~~~iv~~P~~~~q~~~y~~fC~ 272 (304)
.....+.+..+++..+++=+||++..=.+|.++-.
T Consensus 270 ~~~a~~f~~~aa~t~lLvN~PfiI~~P~aw~~sil 304 (536)
T COG5650 270 LRPAIKFIATAAITWLLVNLPFIILGPRAWVESIL 304 (536)
T ss_pred cchHHHHHHHHHHHHHHHcCceEEechHHHHHHHH
Confidence 11123444555666777888988777677777764
No 35
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=82.54 E-value=73 Score=34.05 Aligned_cols=85 Identities=21% Similarity=0.293 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCh--hHHHHHHHHHhhchhhHHHH--hhchhHH-HHHHHHHHHHHHH-hhhHH
Q 022022 124 LAGYIVSNVAFLFAAVYFYRLSVMILKDP--DAALCASLLFCFNPASIFYT--SIYSESL-YALFSVGGLYYLM-SGALN 197 (304)
Q Consensus 124 ~~~~~v~~~~~~~a~~~Ly~L~~~~~~~~--~~a~~a~ll~~~~Pasif~s--a~YtEsl-F~~l~~~gl~~~~-~~~~~ 197 (304)
.+-.++..+-..++.+..|.+.++..+++ ..+.+++++|+++=..+... ....+.+ +.-+.++|+--+. ++|++
T Consensus 90 ~~~~~~~~lk~~lag~~~~~~l~~~~~~~~~~~~~i~s~~Yafsg~~~~~~~~~~fld~~i~lPL~llgie~~~~~~k~~ 169 (843)
T PF09586_consen 90 YAILLLIILKIGLAGLFFYLYLRKFKKSRSDWAALIGSLLYAFSGYVIYYSFNIMFLDAMILLPLLLLGIERLLKEKKWW 169 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 33344444556677788888888888777 88999999999885555432 2223322 2334455655433 34443
Q ss_pred HHHHHHHHHHh
Q 022022 198 ISVLWLAISGC 208 (304)
Q Consensus 198 ~a~~~~~lA~~ 208 (304)
.-.+..+++..
T Consensus 170 ~~~~~~~l~~i 180 (843)
T PF09586_consen 170 LFIISLALALI 180 (843)
T ss_pred hhHHHHHHHHH
Confidence 33344444443
No 36
>PF14897 EpsG: EpsG family
Probab=81.74 E-value=43 Score=30.82 Aligned_cols=130 Identities=17% Similarity=0.144 Sum_probs=70.0
Q ss_pred cHHHHHHHhhcCCCccc---cccccccHHHHHHHHHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022022 73 DSVYFVRIAQCGYEYEQ---SYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMIL 149 (304)
Q Consensus 73 Da~~f~~IA~~GY~~e~---~~AFfPl~P~lvr~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~a~~~Ly~L~~~~~ 149 (304)
|-..|.+.-++.-..+. +..+=|++..+...+..... +.. .--.+. ..+....++..-++..
T Consensus 24 D~~~Y~~~y~~~~~~~~~~~~~~~E~~~~~l~~~~~~~~~---------~~~--~~~~i~----~~i~~~~~~~~i~~~~ 88 (330)
T PF14897_consen 24 DYYNYYEIYDEISNNSFNFSEYGFEPGFYLLNYLFSYFGF---------NYQ--FFFFII----SFISLFLFFFFIKKYS 88 (330)
T ss_pred cHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHHCC---------CHH--HHHHHH----HHHHHHHHHHhHHHcc
Confidence 55566665544332221 15566788888887766421 111 111111 2222333444444443
Q ss_pred CChhHHHHHHHHHhhchhhHHHH-hhchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcchhhHHHHH
Q 022022 150 KDPDAALCASLLFCFNPASIFYT-SIYSESLYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGY 219 (304)
Q Consensus 150 ~~~~~a~~a~ll~~~~Pasif~s-a~YtEslF~~l~~~gl~~~~~~~~~~a~~~~~lA~~~RsnGil~~~~ 219 (304)
+ +.....+.+++ +.+.....+ ...=.++...+.+.|+....+||+..+.++..+|+.+.+.+++....
T Consensus 89 ~-~~~~~~~~~l~-~~~~~~~~~~~~iRq~~A~~~~~~a~~~~~~~k~~~~~~~~lla~~fH~Saii~l~~ 157 (330)
T PF14897_consen 89 K-NYPIFLSLFLF-FSFFFFFYSFNQIRQSLAISFFLLALSYLYKKKWIKFILLVLLAILFHYSAIIFLPL 157 (330)
T ss_pred c-chHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22122233333 222222222 44456666666677777777888888888899999999888776554
No 37
>COG5617 Predicted integral membrane protein [Function unknown]
Probab=75.62 E-value=1.2e+02 Score=32.63 Aligned_cols=130 Identities=19% Similarity=0.199 Sum_probs=72.4
Q ss_pred ccccHHHHHHHhhcCCCccccccccccHHHHHHHHHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022022 70 IVWDSVYFVRIAQCGYEYEQSYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMIL 149 (304)
Q Consensus 70 ~~WDa~~f~~IA~~GY~~e~~~AFfPl~P~lvr~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~a~~~Ly~L~~~~~ 149 (304)
..|+-.|| +||+ -.-|+|=+|.++-++...+. |.... ... +.+. +++ ......|.+.+..-
T Consensus 54 ~~w~~~WY-----~G~p---flrYypPl~Yli~aal~~l~-------~d~~~-t~~-v~~~-la~-llG~~~~~~~r~~g 114 (801)
T COG5617 54 PPWCEYWY-----NGYP---FLRYYPPLSYLIGAALNFLL-------GDVVT-TYA-VFLM-LAF-LLGAGGWLLWRLRG 114 (801)
T ss_pred CCcchhhh-----cCCC---cceecCcHHHHHHHHHHHhh-------cChhH-HHH-HHHH-HHH-HHHHHHHHHHHhhc
Confidence 66777776 5764 45677777777766654432 21111 111 1111 222 22233444444444
Q ss_pred CChhHHHHHHHHHhhchhhHHHHhhchhHHH-----HHHHHHHHHHH---H-hhh----HHHHHHHHHHHHhhcchhhHH
Q 022022 150 KDPDAALCASLLFCFNPASIFYTSIYSESLY-----ALFSVGGLYYL---M-SGA----LNISVLWLAISGCARSNGVLN 216 (304)
Q Consensus 150 ~~~~~a~~a~ll~~~~Pasif~sa~YtEslF-----~~l~~~gl~~~---~-~~~----~~~a~~~~~lA~~~RsnGil~ 216 (304)
...+.|.++++++.++|-.+ .+.++|.-+ .-+..+.++++ . +++ .+..++..++.+.|.+.|-..
T Consensus 115 ~t~~ia~I~alL~ltsp~~l--~vlf~EGniP~v~~i~f~pl~l~~l~~~~~~Gkk~r~~l~~allmslv~~tH~m~~~~ 192 (801)
T COG5617 115 RTGFIALISALLWLTSPENL--KVLFIEGNIPRVLAIGFGPLALGLLERFLERGKKERSLLRMALLMSLVLLTHPMGGAL 192 (801)
T ss_pred cccchHHHHHHHHHhChhhe--EEEEecCcccHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999864 456666433 22222222222 2 222 235567889999999888777
Q ss_pred HHHH
Q 022022 217 AGYF 220 (304)
Q Consensus 217 ~~~~ 220 (304)
.+-.
T Consensus 193 ~g~a 196 (801)
T COG5617 193 SGGA 196 (801)
T ss_pred HHHH
Confidence 6543
No 38
>PF09913 DUF2142: Predicted membrane protein (DUF2142); InterPro: IPR018674 This family of conserved hypothetical proteins has no known function.
Probab=67.00 E-value=1.2e+02 Score=29.07 Aligned_cols=90 Identities=10% Similarity=0.097 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHhhchhhHHHHh-hchhHHHHHHHHHHHHHHHh------
Q 022022 121 VLGLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASIFYTS-IYSESLYALFSVGGLYYLMS------ 193 (304)
Q Consensus 121 ~~~~~~~~v~~~~~~~a~~~Ly~L~~~~~~~~~~a~~a~ll~~~~Pasif~sa-~YtEslF~~l~~~gl~~~~~------ 193 (304)
.....|.++|.++..+.+....|+..+ .| ...++.++.|.+++..+ .-.+++...++++.+..+.+
T Consensus 119 ~~~~l~Rl~nll~~~~l~~~Ai~~~p~----~k---~l~~~i~l~Pm~~~~~aS~s~D~~~~~~~~l~~a~~l~~~~~~~ 191 (389)
T PF09913_consen 119 VMYYLGRLFNLLLYALLVYLAIKLAPR----GK---WLLALIALLPMTLFQAASVSYDGLIIALAFLFIALLLRLYRKKK 191 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcch----hH---HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhccC
Confidence 346789999988877766555554421 12 34667778899998874 44566666555554433332
Q ss_pred ---hhHHHHHHHHHHHHhhcchhhHHH
Q 022022 194 ---GALNISVLWLAISGCARSNGVLNA 217 (304)
Q Consensus 194 ---~~~~~a~~~~~lA~~~RsnGil~~ 217 (304)
++....++..++.+.+|.+=++++
T Consensus 192 ~~~~~~~~l~v~~~ll~~~K~~y~~l~ 218 (389)
T PF09913_consen 192 ITRRDLILLGVLAVLLALSKPPYIPLL 218 (389)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123566778888889995544443
No 39
>PHA02898 virion envelope protein; Provisional
Probab=59.36 E-value=41 Score=26.12 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=30.8
Q ss_pred hcchhhHHHHHHHHHHH-HHHHHHHHHhhhH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHhHhhccCCCCC
Q 022022 209 ARSNGVLNAGYFCFQTM-HQAYDALFLKKRH-FLAMWI-LVCGALRCICIFAPFISFQVYGYFNMCLGRSP 276 (304)
Q Consensus 209 ~RsnGil~~~~~~~~~l-~~~~~~~~~~~~~-~~~~~~-~~~~~l~~~iv~~P~~~~q~~~y~~fC~~~~~ 276 (304)
.|++|++.+|.++.-+- ..++-...+.+.+ -..+|. -+.+++.+++..+..++ +-.|.+||.+...
T Consensus 9 N~~s~vli~GIiLL~~ACIfAfidfSK~~~~~~~~wRalSii~FIlgivl~lG~~i--fs~y~r~C~~~~~ 77 (92)
T PHA02898 9 NRPSYVVAFGIILLIVACICAYIELSKSEKPADSALRSISIISFILAIILILGIIF--FKGYNMFCGGNTT 77 (92)
T ss_pred cCcchHHHHHHHHHHHHHHHheehhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhcCCCcc
Confidence 57788887776544322 2222111122212 111111 12244445555555544 4479999976533
No 40
>PRK13375 pimE mannosyltransferase; Provisional
Probab=58.29 E-value=2e+02 Score=28.60 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=22.7
Q ss_pred HHhhhHHHHHHHHHHHHhhcchhhHHHH
Q 022022 191 LMSGALNISVLWLAISGCARSNGVLNAG 218 (304)
Q Consensus 191 ~~~~~~~~a~~~~~lA~~~RsnGil~~~ 218 (304)
+.++|++.+|++.|+|+..+.+-.++..
T Consensus 167 ll~~r~~~aGvliGLAaaIKlTPavf~l 194 (409)
T PRK13375 167 VYSSRWWLSGLLVGLAAGVKLTPAITGL 194 (409)
T ss_pred HhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 4477888999999999999998766443
No 41
>KOG2552 consensus Major facilitator superfamily permease - Cdc91p [General function prediction only]
Probab=56.41 E-value=1.7e+02 Score=28.66 Aligned_cols=67 Identities=19% Similarity=0.172 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhchhhHHHHhhchhH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcchhhHHHHHH
Q 022022 154 AALCASLLFCFNPASIFYTSIYSES-LYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYF 220 (304)
Q Consensus 154 ~a~~a~ll~~~~Pasif~sa~YtEs-lF~~l~~~gl~~~~~~~~~~a~~~~~lA~~~RsnGil~~~~~ 220 (304)
.+.++++++++||-.+.-..+-|-+ .-.+.....+|...+++..+++.+.++++.--.+-+++-.++
T Consensus 145 i~~~v~l~Yl~NPlTilSCi~~St~~I~N~~v~~~ly~av~~~~~l~a~~la~~t~~s~yp~~L~~P~ 212 (388)
T KOG2552|consen 145 IGDLVALLYLFNPLTILSCIGLSTTVIENFAVAVSLYGAVTGRVPLAAFGLAIATHLSLYPATLTIPL 212 (388)
T ss_pred HHHHHHHHHHhCceeeeeeccccchHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcccchHHHHHHH
Confidence 4568999999999998766555443 346666677788889999999999999987666666655443
No 42
>KOG2575 consensus Glucosyltransferase - Alg6p [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=51.79 E-value=2.6e+02 Score=28.02 Aligned_cols=132 Identities=15% Similarity=0.163 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHh-CChhHHHHHHHHHhhchhhHHHH---hhchhHHHHHHHHHHHHHHHhhhHH
Q 022022 123 GLAGYIVSNVAFLFAAVYFYRLSV-MIL-KDPDAALCASLLFCFNPASIFYT---SIYSESLYALFSVGGLYYLMSGALN 197 (304)
Q Consensus 123 ~~~~~~v~~~~~~~a~~~Ly~L~~-~~~-~~~~~a~~a~ll~~~~Pasif~s---a~YtEslF~~l~~~gl~~~~~~~~~ 197 (304)
--+.++++-+...+-+++.|.... |.. ++.+.+. +.+..++|+-+..- --|. +...=++..+.-.+.+++..
T Consensus 138 MR~TViisd~liy~Pa~ify~~~~~r~~~~~~~~a~--~~~iLl~P~L~LID~GHFQYN-sisLGl~~~ai~~ll~~~~~ 214 (510)
T KOG2575|consen 138 MRSTVIISDLLIYLPALIFYFKWLHRTRSKKSKIAY--AALILLYPSLLLIDHGHFQYN-SISLGLTLYAIAALLKNFYV 214 (510)
T ss_pred HHHHHHHHhHHHHhhHHHHHHHHhhhccCcccHHHH--HHHHHhCCceEEEecCcceec-hhHHHHHHHHHHHHHHhHHH
Confidence 345666777777777777776544 222 1223333 45666888866332 2342 33334445666667789999
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHhhhH--H-HHHHHHHHHHHHHHHHHHHHHH
Q 022022 198 ISVLWLAISGCARSNGVLNAGYFCFQTMHQAYDALFLKKRH--F-LAMWILVCGALRCICIFAPFIS 261 (304)
Q Consensus 198 ~a~~~~~lA~~~RsnGil~~~~~~~~~l~~~~~~~~~~~~~--~-~~~~~~~~~~l~~~iv~~P~~~ 261 (304)
+++++|.+|-.-+-..+-.+..+....+.... ++|-. + +..+..+..+....++-.|++.
T Consensus 215 ~as~~F~LAlnyKQMeLY~A~pfF~fLLg~c~----k~k~~~~f~ri~~ia~~Vv~TF~iiw~P~~~ 277 (510)
T KOG2575|consen 215 LASVLFVLALNYKQMELYHALPFFAFLLGSCL----KPKLFNSFARIIKIALAVVGTFVIIWLPFLL 277 (510)
T ss_pred HHHHHHHHHHhHHHHHHHhchHHHHHHHHHHh----cccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998888888765555554322 11111 1 1233333444456677778763
No 43
>PHA03048 IMV membrane protein; Provisional
Probab=50.54 E-value=90 Score=24.34 Aligned_cols=25 Identities=8% Similarity=0.018 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhccCCC
Q 022022 248 GALRCICIFAPFISFQVYGYFNMCLGR 274 (304)
Q Consensus 248 ~~l~~~iv~~P~~~~q~~~y~~fC~~~ 274 (304)
+++.++++.+..++ |-.|.+||.+.
T Consensus 50 ~FIlgivl~lG~~i--fsmy~r~C~~~ 74 (93)
T PHA03048 50 AFVLGIVMTIGMLI--YSMWGRYCTPS 74 (93)
T ss_pred HHHHHHHHHHHHHH--HHHHhcccCCC
Confidence 34444555555444 45799999764
No 44
>PF00040 fn2: Fibronectin type II domain; InterPro: IPR000562 Fibronectin is a multi-domain glycoprotein, found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes, that binds cell surfaces and various compounds including collagen, fibrin, heparin, DNA, and actin. Fibronectins are involved in a number of important functions e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The major part of the sequence of fibronectin consists of the repetition of three types of domains, which are called type I, II, and III []. Type II domain is approximately forty residues long, contains four conserved cysteines involved in disulphide bonds and is part of the collagen-binding region of fibronectin. In fibronectin the type II domain is duplicated. Type II domains have also been found in a range of proteins including blood coagulation factor XII; bovine seminal plasma proteins PDC-109 (BSP-A1/A2) and BSP-A3 []; cation-independent mannose-6-phosphate receptor []; mannose receptor of macrophages []; 180 Kd secretory phospholipase A2 receptor []. DEC-205 receptor []; 72 Kd and 92 Kd type IV collagenase (3.4.24.24 from EC) []; and hepatocyte growth factor activator [].; PDB: 1H8P_A 1PDC_A 1GXD_A 1CXW_A 1EAK_C 1CK7_A 3M7P_A 1E88_A 2FN2_A 3MQL_A ....
Probab=34.84 E-value=21 Score=23.64 Aligned_cols=27 Identities=26% Similarity=0.699 Sum_probs=14.2
Q ss_pred ccCCCCCCCCcccccccCCcchHHHhhhhcc
Q 022022 270 MCLGRSPDEMRPWCKAKVPLLYNFIQSHYWF 300 (304)
Q Consensus 270 fC~~~~~~~~~~WC~~~~P~~Ys~vQ~~YWn 300 (304)
=|+.....+.++||.-+ .+|=|++-|+
T Consensus 14 ~Ct~~~~~~~~~WCatt----~~yd~d~~W~ 40 (42)
T PF00040_consen 14 SCTTDGSSDGRPWCATT----ANYDRDGKWG 40 (42)
T ss_dssp S-B-TTSSSSSEEEESS----SBHHHHS-EE
T ss_pred CCcCCCCCCCCCCcccc----CCCccCCccc
Confidence 36544333348999887 3344566664
No 45
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.67 E-value=46 Score=32.35 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=11.0
Q ss_pred cccccHHHHHHHHHH
Q 022022 92 AFLPLLPAFTHLLSR 106 (304)
Q Consensus 92 AFfPl~P~lvr~~~~ 106 (304)
.=||+||..||....
T Consensus 205 vLFPLWP~~mR~gvy 219 (372)
T KOG2927|consen 205 VLFPLWPRRMRQGVY 219 (372)
T ss_pred HhcccCcHHHhccee
Confidence 458899988886543
No 46
>COG4745 Predicted membrane-bound mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=29.23 E-value=6.4e+02 Score=25.82 Aligned_cols=70 Identities=21% Similarity=0.360 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHhhchhhHHHHh-hchhHHHHHHHHHHHHHHHh----h--hHH-HHHHHHHHHHhhcchhhHHHHHHH
Q 022022 152 PDAALCASLLFCFNPASIFYTS-IYSESLYALFSVGGLYYLMS----G--ALN-ISVLWLAISGCARSNGVLNAGYFC 221 (304)
Q Consensus 152 ~~~a~~a~ll~~~~Pasif~sa-~YtEslF~~l~~~gl~~~~~----~--~~~-~a~~~~~lA~~~RsnGil~~~~~~ 221 (304)
++-....+.+.++||.-+.+|- .=.+-+-++++++.+.+..| + +++ .++..+++|-.++-|.++....+.
T Consensus 111 d~evlal~~LLA~sPvlVYYSRFmR~Dl~la~ftl~aVg~~vR~lDt~R~~yL~~sA~~lalAftaKEnall~~~~f~ 188 (556)
T COG4745 111 DKEVLALATLLAFSPVLVYYSRFMRNDLLLAAFTLLAVGFAVRYLDTERFRYLYASAVSLALAFTAKENALLYVAAFL 188 (556)
T ss_pred chHHHHHHHHHhcChhhhhHHHHHhhhHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhhhcccceeHHHHHh
Confidence 3455667788999999998874 44666666677766666543 2 223 567788999999999998765433
No 47
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=27.46 E-value=2.5e+02 Score=21.94 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhccCC
Q 022022 248 GALRCICIFAPFISFQVYGYFNMCLG 273 (304)
Q Consensus 248 ~~l~~~iv~~P~~~~q~~~y~~fC~~ 273 (304)
+++.+++..+..++ |-.|.++|.+
T Consensus 51 ~FI~giil~lG~~i--~s~ygr~C~~ 74 (92)
T PF05767_consen 51 CFILGIILTLGIVI--FSMYGRYCRP 74 (92)
T ss_pred HHHHHHHHHHHHHH--HHHHhhhcCC
Confidence 34444555555444 4468999953
No 48
>smart00130 KR Kringle domain. Named after a Danish pastry. Found in several serine proteases and in ROR-like receptors. Can occur in up to 38 copies (in apolipoprotein(a)). Plasminogen-like kringles possess affinity for free lysine and lysine- containing peptides.
Probab=25.40 E-value=37 Score=25.70 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=13.1
Q ss_pred hHhhccCCCCCCCCcccccc
Q 022022 266 GYFNMCLGRSPDEMRPWCKA 285 (304)
Q Consensus 266 ~y~~fC~~~~~~~~~~WC~~ 285 (304)
.-+.||...+.+..+|||--
T Consensus 47 ~~hNyCRNPd~~~~~PWCyv 66 (83)
T smart00130 47 LEENYCRNPDGDSEGPWCYT 66 (83)
T ss_pred ccccccCCCCCCCCCCEEEe
Confidence 35789975444335899943
No 49
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=24.08 E-value=7.6e+02 Score=25.01 Aligned_cols=91 Identities=14% Similarity=0.112 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHhhchhhHHHHhhchhHHHHHHHHHHHHHHHh-----------------h
Q 022022 132 VAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASIFYTSIYSESLYALFSVGGLYYLMS-----------------G 194 (304)
Q Consensus 132 ~~~~~a~~~Ly~L~~~~~~~~~~a~~a~ll~~~~Pasif~sa~YtEslF~~l~~~gl~~~~~-----------------~ 194 (304)
...+++..+.=+|+++. +.++.-..+.++.++.=...++.. .+++...+.+..+...-. +
T Consensus 283 ~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~~~~~~f~~--~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyg 359 (467)
T COG2211 283 AGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVGYLLLYFTP--AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYG 359 (467)
T ss_pred HHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHHHHHHHhhc--CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHH
Confidence 33444455566666665 456666667777777777777755 444444433333322211 1
Q ss_pred hHH----HHHHHHHHHHhhcchhhHHHHHHHHHHH
Q 022022 195 ALN----ISVLWLAISGCARSNGVLNAGYFCFQTM 225 (304)
Q Consensus 195 ~~~----~a~~~~~lA~~~RsnGil~~~~~~~~~l 225 (304)
++- ..|+.++..+.+|--|...++++.--.+
T Consensus 360 e~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L 394 (467)
T COG2211 360 EWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWIL 394 (467)
T ss_pred HHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 5789999999999999998887554333
No 50
>cd00108 KR Kringle domain; Kringle domains are believed to play a role in binding mediators, such as peptides, other proteins, membranes, or phospholipids. They are autonomous structural domains, found in a varying number of copies, in blood clotting and fibrinolytic proteins, some serine proteases and plasma proteins. Plasminogen-like kringles possess affinity for free lysine and lysine-containing peptides.
Probab=23.05 E-value=44 Score=25.28 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=13.4
Q ss_pred hHhhccCCCCCCCCccccccc
Q 022022 266 GYFNMCLGRSPDEMRPWCKAK 286 (304)
Q Consensus 266 ~y~~fC~~~~~~~~~~WC~~~ 286 (304)
.-+.||...+.+..+|||--+
T Consensus 48 ~~hNyCRNPd~~~~~PWCyv~ 68 (83)
T cd00108 48 LEENYCRNPDGDPEGPWCYTT 68 (83)
T ss_pred ccccccCCCCCCCCCCEEEeC
Confidence 357899755444258999443
No 51
>KOG2292 consensus Oligosaccharyltransferase, STT3 subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.38 E-value=2.7e+02 Score=29.02 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHhhchhhHHHHh--hc-hhHHHHHHHHHHHHHHHhhh
Q 022022 132 VAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASIFYTS--IY-SESLYALFSVGGLYYLMSGA 195 (304)
Q Consensus 132 ~~~~~a~~~Ly~L~~~~~~~~~~a~~a~ll~~~~Pasif~sa--~Y-tEslF~~l~~~gl~~~~~~~ 195 (304)
+++..++++-|.|++++- |...++.|+.+.++.|.-+==|+ -| .|....++.....|+..|..
T Consensus 125 ~FSg~TsiaTY~ltkEl~-~~gaGL~AA~fiaivPgYiSRSVAGSYDNE~IAIfal~~T~ylwiKav 190 (751)
T KOG2292|consen 125 LFSGLTSIATYLLTKELK-SAGAGLLAAAFIAIVPGYISRSVAGSYDNEGIAIFALLFTYYLWIKAV 190 (751)
T ss_pred hhhchHHHHHHHHHHHHh-cccccHHHHHHHhhCcccccccccccccchHHHHHHHHHHHHHHHHHh
Confidence 455667888999999876 78899999999999999875553 33 68888887777888777643
No 52
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=20.81 E-value=1.7e+02 Score=26.69 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=9.7
Q ss_pred cccccHHHHHHHHH
Q 022022 92 AFLPLLPAFTHLLS 105 (304)
Q Consensus 92 AFfPl~P~lvr~~~ 105 (304)
.-||+||..+|...
T Consensus 126 ~lFPlWP~~~r~gv 139 (224)
T PF03839_consen 126 CLFPLWPRWMRQGV 139 (224)
T ss_pred HhhhcChHHHhhee
Confidence 35788888887643
No 53
>KOG2515 consensus Mannosyltransferase [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.02 E-value=9.6e+02 Score=24.65 Aligned_cols=85 Identities=14% Similarity=0.160 Sum_probs=46.4
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHhhchhhHHHHhhchhHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHhh-cchhhHHH
Q 022022 140 YFYRLSVMILKDPDAALCASLLFCFNPASIFYTSIYSESLYA-LFSVGGLYYLMSGALNISVLWLAISGCA-RSNGVLNA 217 (304)
Q Consensus 140 ~Ly~L~~~~~~~~~~a~~a~ll~~~~Pasif~sa~YtEslF~-~l~~~gl~~~~~~~~~~a~~~~~lA~~~-RsnGil~~ 217 (304)
.+|+=-.+.+ +..+|+...++.+++++-++-|+..--|-|+ .+...++=....+++-.|....++++.. =|=..+++
T Consensus 112 ~l~~ai~~kf-~~~ia~~~i~f~~fssGmF~aStafLPSSF~M~~~~~al~a~l~~n~~~av~~~a~gailGWPFsa~l~ 190 (568)
T KOG2515|consen 112 YLYKAICRKF-GLAIARIWIIFLLFSSGMFHASTAFLPSSFAMYLTVLALGAWLTENYTKAVAYVAIGAILGWPFSALLG 190 (568)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhcccceeeechhcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccHHHHHHh
Confidence 4444444445 4778888888999999888777555444443 3333333333355555444444444332 24444555
Q ss_pred HHHHHHHH
Q 022022 218 GYFCFQTM 225 (304)
Q Consensus 218 ~~~~~~~l 225 (304)
.+++.+.+
T Consensus 191 lPi~~~ll 198 (568)
T KOG2515|consen 191 LPILLELL 198 (568)
T ss_pred hHHHHHHH
Confidence 55555433
Done!