Query 022022
Match_columns 304
No_of_seqs 173 out of 577
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 12:50:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022022.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022022hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rce_A Oligosaccharide transfe 97.3 0.0067 2.3E-07 62.4 16.5 134 69-213 52-199 (724)
2 1j7m_A Matrix metalloproteinas 28.1 22 0.00074 25.5 1.3 27 270-300 36-62 (72)
3 5hpg_A Plasminogen; serine pro 25.4 25 0.00086 25.6 1.3 19 268-286 49-67 (84)
4 1i71_A APO(A), apolipoprotein( 24.9 26 0.00089 25.6 1.3 20 268-288 48-67 (83)
5 1pml_A Tissue plasminogen acti 22.1 29 0.00098 25.4 1.0 18 267-285 51-68 (86)
6 2k4r_A Neurotrypsin; kringle d 20.6 16 0.00053 26.4 -0.7 20 268-288 44-63 (77)
7 3k65_A Prothrombin; coagulatio 20.3 35 0.0012 26.6 1.3 22 267-288 60-81 (116)
8 1jfn_A APO(A) KIV-T6, apolipop 20.3 34 0.0012 26.8 1.2 20 268-288 71-90 (119)
9 3e6p_L Prothrombin; meizothrom 18.7 39 0.0013 27.8 1.3 22 267-288 53-74 (158)
10 2qj2_A Hepatocyte growth facto 18.4 41 0.0014 28.5 1.3 22 267-288 148-169 (184)
No 1
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=97.27 E-value=0.0067 Score=62.42 Aligned_cols=134 Identities=15% Similarity=0.013 Sum_probs=93.3
Q ss_pred cccccHHHHHHHhhc---CCCcc-ccccccccHHHHHHHHHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022022 69 SIVWDSVYFVRIAQC---GYEYE-QSYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRL 144 (304)
Q Consensus 69 ~~~WDa~~f~~IA~~---GY~~e-~~~AFfPl~P~lvr~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~a~~~Ly~L 144 (304)
+..=|+-|+.+-|++ |...+ ..-.+-|+++.++..+..+++ . ....+++.+..+++.++++..|.+
T Consensus 52 ~~~~D~yy~~r~ar~~l~~~~~p~~~~p~g~~~~~l~a~l~~i~g--~--------sl~~v~~~lp~ifg~L~vi~~yll 121 (724)
T 3rce_A 52 ITTNDGYAFAEGARDMIAGFHQPNDLSYFGSSLSTLTYWLYSILP--F--------SFESIILYMSTFFASLIVVPIILI 121 (724)
T ss_dssp CSCHHHHHHHHHHHHHHHSCCCTTSCCCTTCHHHHHHHHHHHSCS--S--------CHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred eccCCHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHHHcC--C--------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366799999987753 44322 123456788888888887652 1 133556777778888889999999
Q ss_pred HHHHhCChhHHHHHHHHHhhchhhHHHH-hh--chhHHHHHHHHHHHHHHH---hhh----HHHHHHHHHHHHhhcchh
Q 022022 145 SVMILKDPDAALCASLLFCFNPASIFYT-SI--YSESLYALFSVGGLYYLM---SGA----LNISVLWLAISGCARSNG 213 (304)
Q Consensus 145 ~~~~~~~~~~a~~a~ll~~~~Pasif~s-a~--YtEslF~~l~~~gl~~~~---~~~----~~~a~~~~~lA~~~RsnG 213 (304)
++++. +++.|..|+++.++.|+-+.=| ++ -+|++..++..+++++.. +++ ..++++..++...+.+.|
T Consensus 122 ~~el~-~~~aGl~AAll~ai~P~~i~RS~aG~~D~e~l~i~~~ll~~~~~i~alk~~~~~~~~lagl~~~ly~~~~~gg 199 (724)
T 3rce_A 122 AREYK-LTTYGFIAALLGSIANSYYNRTMSGYYDTDMLVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIYLWWYPSS 199 (724)
T ss_dssp HHHTT-CHHHHHHHHHHHTTSHHHHHTSSTTCCSGGGGTTHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHc-CchHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcch
Confidence 99886 6889999999999999965444 33 367655555555555443 222 246777777888888877
No 2
>1j7m_A Matrix metalloproteinase 2; beta sheet, alpha helix, hydrolase; NMR {Homo sapiens} SCOP: g.14.1.2
Probab=28.15 E-value=22 Score=25.53 Aligned_cols=27 Identities=19% Similarity=0.567 Sum_probs=17.9
Q ss_pred ccCCCCCCCCcccccccCCcchHHHhhhhcc
Q 022022 270 MCLGRSPDEMRPWCKAKVPLLYNFIQSHYWF 300 (304)
Q Consensus 270 fC~~~~~~~~~~WC~~~~P~~Ys~vQ~~YWn 300 (304)
=|......+.++||..+ -+|-|++-|+
T Consensus 36 ~Ct~~g~~~~~~WCaTT----~nyd~D~~Wg 62 (72)
T 1j7m_A 36 SCTSAGRSDGKMWCATT----ANYDDDRKWG 62 (72)
T ss_dssp SCBCTTCSSSCCEEESS----SBHHHHCCEE
T ss_pred ccccCCCCCCceeecCc----cccCCCCCEe
Confidence 36544333358999987 4577788886
No 3
>5hpg_A Plasminogen; serine protease, kringle 5, fibrinolysis; 1.66A {Homo sapiens} SCOP: g.14.1.1 PDB: 2knf_A
Probab=25.38 E-value=25 Score=25.62 Aligned_cols=19 Identities=32% Similarity=0.670 Sum_probs=12.5
Q ss_pred hhccCCCCCCCCccccccc
Q 022022 268 FNMCLGRSPDEMRPWCKAK 286 (304)
Q Consensus 268 ~~fC~~~~~~~~~~WC~~~ 286 (304)
..||...+.|..+|||--+
T Consensus 49 ~NyCRNPdgd~~~PWCyt~ 67 (84)
T 5hpg_A 49 KNYCRNPDGDVGGPWCYTT 67 (84)
T ss_dssp TTCCBCTTCCTTCCEEEBS
T ss_pred cccccCCCCCCCCCEeEEC
Confidence 5799755444458999544
No 4
>1i71_A APO(A), apolipoprotein(A); alipoprotein(A), kringle, protein-ligand interaction, lysine binding, hydrolase; 1.45A {Homo sapiens} SCOP: g.14.1.1 PDB: 1kiv_A 3kiv_A 4kiv_A 1krn_A 1pmk_A 2pk4_A 1pk4_A
Probab=24.88 E-value=26 Score=25.56 Aligned_cols=20 Identities=35% Similarity=0.916 Sum_probs=13.6
Q ss_pred hhccCCCCCCCCcccccccCC
Q 022022 268 FNMCLGRSPDEMRPWCKAKVP 288 (304)
Q Consensus 268 ~~fC~~~~~~~~~~WC~~~~P 288 (304)
+.||...+.+ .+|||--+-|
T Consensus 48 ~NyCRNPdg~-~~PWCyt~d~ 67 (83)
T 1i71_A 48 RNYCRNPDAE-IRPWCYTMDP 67 (83)
T ss_dssp TTCCBCSSSC-SSCEEEBSST
T ss_pred cccccCCCCC-CCCceEeCCC
Confidence 6799754444 5999965544
No 5
>1pml_A Tissue plasminogen activator kringle 2; hydrolase(serine protease); 2.38A {Homo sapiens} SCOP: g.14.1.1 PDB: 1pk2_A* 1tpk_A
Probab=22.08 E-value=29 Score=25.44 Aligned_cols=18 Identities=33% Similarity=0.922 Sum_probs=12.4
Q ss_pred HhhccCCCCCCCCcccccc
Q 022022 267 YFNMCLGRSPDEMRPWCKA 285 (304)
Q Consensus 267 y~~fC~~~~~~~~~~WC~~ 285 (304)
-+.||...+.+ .+|||--
T Consensus 51 ~~NyCRNPdg~-~~PWCyt 68 (86)
T 1pml_A 51 KHNYCRNPDGD-AKPWCHV 68 (86)
T ss_dssp SSCCCBCSSCC-SSCEEEE
T ss_pred cCccccCCCCC-CCCceEe
Confidence 47899765444 4999953
No 6
>2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A
Probab=20.55 E-value=16 Score=26.40 Aligned_cols=20 Identities=30% Similarity=0.708 Sum_probs=13.6
Q ss_pred hhccCCCCCCCCcccccccCC
Q 022022 268 FNMCLGRSPDEMRPWCKAKVP 288 (304)
Q Consensus 268 ~~fC~~~~~~~~~~WC~~~~P 288 (304)
+.||...+.+ .+|||--+-|
T Consensus 44 ~NyCRNPdg~-~~PWCyt~~~ 63 (77)
T 2k4r_A 44 HNFCRSPDGA-GRPWCFYRNA 63 (77)
T ss_dssp SCCCEEEETT-TEEEEEEECT
T ss_pred CccccCCCCC-CCCcceecCC
Confidence 6899754444 4999965544
No 7
>3k65_A Prothrombin; coagulation, zymogen, hydrolase; 1.85A {Homo sapiens} PDB: 2hpq_P* 2hpp_P*
Probab=20.33 E-value=35 Score=26.58 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=13.7
Q ss_pred HhhccCCCCCCCCcccccccCC
Q 022022 267 YFNMCLGRSPDEMRPWCKAKVP 288 (304)
Q Consensus 267 y~~fC~~~~~~~~~~WC~~~~P 288 (304)
-+.||...+.+..+|||--+-|
T Consensus 60 ~hNYCRNPDgd~~gPWCYt~d~ 81 (116)
T 3k65_A 60 VENFCRNPDGDEEGVWCYVAGK 81 (116)
T ss_dssp CTTCCBCTTCCTTCCEEECSSS
T ss_pred ccccccCCCCCCCCCeeEeCCC
Confidence 3579975544444799965434
No 8
>1jfn_A APO(A) KIV-T6, apolipoprotein A, KIV-T6, apolipoprotein; kringle domain, protein-protein recognition, LP(A), lipid transport; NMR {Homo sapiens} SCOP: g.14.1.1
Probab=20.29 E-value=34 Score=26.84 Aligned_cols=20 Identities=30% Similarity=0.835 Sum_probs=13.2
Q ss_pred hhccCCCCCCCCcccccccCC
Q 022022 268 FNMCLGRSPDEMRPWCKAKVP 288 (304)
Q Consensus 268 ~~fC~~~~~~~~~~WC~~~~P 288 (304)
..||...+.+ .+|||--+=|
T Consensus 71 hNYCRNPDgd-~~PWCYt~d~ 90 (119)
T 1jfn_A 71 RNYCRNPDAE-ISPWCYTMDP 90 (119)
T ss_dssp TTCCBCTTCC-SSCEEEBSST
T ss_pred CccccCCCCC-CCCceEeCCC
Confidence 6799754444 5999965544
No 9
>3e6p_L Prothrombin; meizothrombin, allostery, linkage, Na+ binding, AC phase, blood coagulation, cleavage on PAIR of basic residue disease mutation; HET: DFK NAG; 2.10A {Homo sapiens} PDB: 1a0h_A*
Probab=18.70 E-value=39 Score=27.83 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=13.7
Q ss_pred HhhccCCCCCCCCcccccccCC
Q 022022 267 YFNMCLGRSPDEMRPWCKAKVP 288 (304)
Q Consensus 267 y~~fC~~~~~~~~~~WC~~~~P 288 (304)
-+.||...+.+..+|||--+-|
T Consensus 53 ~hNYCRNPDgd~~gPWCYt~d~ 74 (158)
T 3e6p_L 53 VENFCRNPDGDEEGVWCYVAGK 74 (158)
T ss_dssp CTTCCBCTTCCTTCCEEECSSS
T ss_pred ccccccCCCCCCCCCeeEeCCC
Confidence 3679975544444799954434
No 10
>2qj2_A Hepatocyte growth factor; HGF/SF, hormone/growth factor; 1.81A {Homo sapiens} SCOP: g.10.1.1 g.14.1.1 PDB: 1nk1_A 3mkp_A* 1gmn_A* 1gmo_A* 1bht_A* 1gp9_A* 2qj4_A
Probab=18.40 E-value=41 Score=28.45 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=14.0
Q ss_pred HhhccCCCCCCCCcccccccCC
Q 022022 267 YFNMCLGRSPDEMRPWCKAKVP 288 (304)
Q Consensus 267 y~~fC~~~~~~~~~~WC~~~~P 288 (304)
-+.||...+.++.+|||--+-|
T Consensus 148 ~hNYCRNPDgd~~~PWCYt~d~ 169 (184)
T 2qj2_A 148 QENYCRNPRGEEGGPWCFTSNP 169 (184)
T ss_dssp CTTCCBCSSCCTTCSEEEBSST
T ss_pred CCCcccCCCCCCCCCceEcCCC
Confidence 3679975444435899965544
Done!