Query 022023
Match_columns 304
No_of_seqs 246 out of 1375
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 07:26:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022023.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022023hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02237 glyceraldehyde-3-phos 100.0 8E-84 1.7E-88 634.6 24.2 282 3-295 1-282 (442)
2 PTZ00434 cytosolic glyceraldeh 100.0 1.8E-73 3.9E-78 549.9 19.7 208 85-295 2-222 (361)
3 PLN03096 glyceraldehyde-3-phos 100.0 2.3E-72 5E-77 548.7 23.0 254 35-296 13-266 (395)
4 PRK08289 glyceraldehyde-3-phos 100.0 1.1E-70 2.5E-75 543.6 20.5 237 49-295 96-342 (477)
5 PRK07403 glyceraldehyde-3-phos 100.0 9E-69 2E-73 515.0 20.0 206 87-295 2-207 (337)
6 COG0057 GapA Glyceraldehyde-3- 100.0 1.6E-68 3.5E-73 509.1 19.6 204 86-295 1-205 (335)
7 PRK15425 gapA glyceraldehyde-3 100.0 1.2E-66 2.7E-71 499.3 20.3 204 85-295 1-204 (331)
8 PTZ00023 glyceraldehyde-3-phos 100.0 1.4E-66 3E-71 500.0 20.3 207 85-296 1-209 (337)
9 PRK07729 glyceraldehyde-3-phos 100.0 1.2E-66 2.7E-71 501.0 19.8 205 85-295 1-205 (343)
10 TIGR01534 GAPDH-I glyceraldehy 100.0 7E-65 1.5E-69 486.7 19.8 203 88-295 1-205 (327)
11 PLN02272 glyceraldehyde-3-phos 100.0 5.3E-64 1.1E-68 492.7 24.7 203 87-295 86-289 (421)
12 PTZ00353 glycosomal glyceralde 100.0 9.4E-64 2E-68 480.9 20.1 204 85-295 1-208 (342)
13 PRK13535 erythrose 4-phosphate 100.0 1.6E-63 3.4E-68 478.9 19.7 204 87-295 2-207 (336)
14 PRK08955 glyceraldehyde-3-phos 100.0 5.7E-63 1.2E-67 474.7 20.6 205 85-296 1-206 (334)
15 PLN02358 glyceraldehyde-3-phos 100.0 8.2E-63 1.8E-67 474.3 21.0 205 85-295 4-210 (338)
16 TIGR01532 E4PD_g-proteo D-eryt 100.0 1.5E-60 3.3E-65 456.5 20.3 203 88-295 1-205 (325)
17 PF00044 Gp_dh_N: Glyceraldehy 100.0 2.3E-49 4.9E-54 343.0 11.0 150 87-240 1-151 (151)
18 KOG0657 Glyceraldehyde 3-phosp 100.0 5E-50 1.1E-54 372.8 7.3 186 97-293 1-187 (285)
19 smart00846 Gp_dh_N Glyceraldeh 100.0 1.5E-44 3.3E-49 311.6 16.2 149 87-240 1-149 (149)
20 TIGR01546 GAPDH-II_archae glyc 100.0 1.3E-40 2.9E-45 319.8 14.6 180 89-296 1-183 (333)
21 PRK04207 glyceraldehyde-3-phos 100.0 1.8E-32 4E-37 263.7 14.5 166 86-271 1-171 (341)
22 PRK14874 aspartate-semialdehyd 99.9 1.3E-26 2.7E-31 222.1 13.0 182 87-299 2-201 (334)
23 PRK06901 aspartate-semialdehyd 99.9 1.1E-25 2.5E-30 215.4 13.1 156 86-273 3-163 (322)
24 TIGR01296 asd_B aspartate-semi 99.9 1.2E-24 2.5E-29 209.5 13.2 178 88-298 1-203 (339)
25 COG0136 Asd Aspartate-semialde 99.9 8.4E-23 1.8E-27 196.3 11.8 159 87-274 2-167 (334)
26 TIGR01745 asd_gamma aspartate- 99.9 6.4E-23 1.4E-27 199.8 11.0 158 87-273 1-167 (366)
27 PRK06728 aspartate-semialdehyd 99.8 4.1E-19 9E-24 172.2 15.3 158 85-273 4-165 (347)
28 PRK08040 putative semialdehyde 99.8 6.9E-19 1.5E-23 169.9 16.1 159 85-274 3-166 (336)
29 PRK06598 aspartate-semialdehyd 99.8 5.7E-19 1.2E-23 172.4 12.3 160 87-274 2-169 (369)
30 PLN02383 aspartate semialdehyd 99.7 1.2E-17 2.6E-22 161.6 14.0 160 83-273 4-172 (344)
31 PRK05671 aspartate-semialdehyd 99.7 2.7E-17 5.8E-22 158.8 13.9 157 86-274 4-165 (336)
32 TIGR00978 asd_EA aspartate-sem 99.7 2.7E-17 5.9E-22 158.1 12.4 170 87-276 1-182 (341)
33 PRK08664 aspartate-semialdehyd 99.7 3.7E-17 8.1E-22 157.6 12.6 171 85-276 2-185 (349)
34 PRK00436 argC N-acetyl-gamma-g 99.6 2.1E-14 4.6E-19 138.5 13.1 165 85-278 1-191 (343)
35 PF02800 Gp_dh_C: Glyceraldehy 99.5 9.3E-15 2E-19 127.4 4.6 49 245-295 1-49 (157)
36 TIGR01850 argC N-acetyl-gamma- 99.5 1E-13 2.3E-18 133.9 11.1 160 87-274 1-186 (346)
37 PRK11863 N-acetyl-gamma-glutam 99.5 2.8E-13 6.2E-18 130.0 11.4 141 85-270 1-146 (313)
38 PLN02968 Probable N-acetyl-gam 99.4 5.1E-13 1.1E-17 131.2 11.7 164 85-277 37-224 (381)
39 PRK08300 acetaldehyde dehydrog 99.4 1E-12 2.3E-17 125.6 7.7 163 85-277 3-170 (302)
40 KOG4777 Aspartate-semialdehyde 99.4 6.1E-13 1.3E-17 124.9 5.5 167 88-274 5-187 (361)
41 TIGR01851 argC_other N-acetyl- 99.2 3.5E-11 7.6E-16 115.6 10.9 140 87-271 2-146 (310)
42 TIGR03215 ac_ald_DH_ac acetald 99.1 4.1E-10 8.8E-15 107.1 10.2 153 86-271 1-155 (285)
43 PF01118 Semialdhyde_dh: Semia 98.7 8E-09 1.7E-13 85.2 3.9 115 88-228 1-119 (121)
44 smart00859 Semialdhyde_dh Semi 97.8 4.1E-05 8.9E-10 62.7 6.3 113 88-227 1-120 (122)
45 COG0002 ArgC Acetylglutamate s 97.8 9.5E-05 2.1E-09 72.4 8.5 144 85-255 1-167 (349)
46 PRK13301 putative L-aspartate 97.6 4.9E-05 1.1E-09 72.1 4.2 92 85-207 1-93 (267)
47 PRK13303 L-aspartate dehydroge 97.3 0.00068 1.5E-08 63.5 7.3 91 87-209 2-93 (265)
48 PRK06270 homoserine dehydrogen 97.2 0.0011 2.4E-08 64.3 7.6 37 85-121 1-44 (341)
49 TIGR00036 dapB dihydrodipicoli 97.0 0.0014 3.1E-08 61.5 5.9 95 87-206 2-97 (266)
50 COG1712 Predicted dinucleotide 96.9 0.002 4.3E-08 60.4 6.1 92 87-208 1-92 (255)
51 TIGR01921 DAP-DH diaminopimela 96.9 0.0019 4.2E-08 62.9 6.3 88 86-207 3-90 (324)
52 PRK06392 homoserine dehydrogen 96.8 0.0038 8.2E-08 60.7 7.2 35 87-121 1-40 (326)
53 PRK13304 L-aspartate dehydroge 96.7 0.004 8.7E-08 58.3 7.0 92 87-209 2-93 (265)
54 PRK08374 homoserine dehydrogen 96.6 0.003 6.6E-08 61.3 5.3 37 85-121 1-44 (336)
55 PRK00048 dihydrodipicolinate r 96.6 0.0048 1E-07 57.5 6.2 34 86-121 1-35 (257)
56 PRK13302 putative L-aspartate 96.6 0.0057 1.2E-07 57.7 6.7 88 86-202 6-93 (271)
57 PRK06813 homoserine dehydrogen 96.5 0.004 8.7E-08 61.1 5.3 36 85-120 1-43 (346)
58 COG0460 ThrA Homoserine dehydr 96.5 0.0052 1.1E-07 60.2 5.9 37 85-121 2-45 (333)
59 PRK06349 homoserine dehydrogen 96.3 0.006 1.3E-07 61.0 5.7 93 86-208 3-103 (426)
60 PF01408 GFO_IDH_MocA: Oxidore 96.2 0.012 2.6E-07 47.2 5.5 94 87-210 1-95 (120)
61 COG2344 AT-rich DNA-binding pr 95.9 0.015 3.4E-07 53.2 5.4 98 85-210 83-180 (211)
62 cd01076 NAD_bind_1_Glu_DH NAD( 95.6 0.13 2.8E-06 47.5 10.6 53 57-121 11-63 (227)
63 PF01113 DapB_N: Dihydrodipico 95.6 0.019 4.2E-07 47.8 4.6 33 87-121 1-34 (124)
64 PRK11579 putative oxidoreducta 95.5 0.051 1.1E-06 52.2 8.0 92 86-209 4-96 (346)
65 PF03447 NAD_binding_3: Homose 95.5 0.0063 1.4E-07 49.4 1.3 87 93-208 1-89 (117)
66 cd05211 NAD_bind_Glu_Leu_Phe_V 95.2 0.21 4.5E-06 45.9 10.4 34 85-121 22-55 (217)
67 COG0289 DapB Dihydrodipicolina 95.1 0.1 2.2E-06 49.9 8.3 95 86-204 2-97 (266)
68 PRK05472 redox-sensing transcr 94.9 0.082 1.8E-06 47.8 6.8 96 86-209 84-179 (213)
69 PF02826 2-Hacid_dh_C: D-isome 94.3 0.071 1.5E-06 46.8 4.8 33 86-121 36-68 (178)
70 PLN02700 homoserine dehydrogen 94.1 0.08 1.7E-06 52.8 5.3 37 85-121 2-44 (377)
71 PRK05447 1-deoxy-D-xylulose 5- 93.9 0.19 4E-06 50.4 7.3 111 87-206 2-120 (385)
72 cd05313 NAD_bind_2_Glu_DH NAD( 93.7 0.56 1.2E-05 44.4 9.9 105 85-206 37-151 (254)
73 PRK09414 glutamate dehydrogena 93.7 0.23 5E-06 50.5 7.8 102 85-206 231-341 (445)
74 PLN02477 glutamate dehydrogena 93.6 0.56 1.2E-05 47.3 10.2 34 85-121 205-238 (410)
75 PRK09466 metL bifunctional asp 93.5 0.057 1.2E-06 58.5 3.2 36 85-120 457-499 (810)
76 PLN02775 Probable dihydrodipic 93.4 0.34 7.3E-06 46.8 7.9 34 85-121 10-44 (286)
77 PRK09436 thrA bifunctional asp 93.2 0.097 2.1E-06 56.8 4.4 36 85-120 464-505 (819)
78 COG4569 MhpF Acetaldehyde dehy 93.1 0.28 6E-06 46.0 6.6 73 176-254 71-144 (310)
79 PRK10206 putative oxidoreducta 92.9 0.19 4.1E-06 48.7 5.6 95 86-209 1-96 (344)
80 COG4091 Predicted homoserine d 92.4 0.11 2.5E-06 51.7 3.3 35 85-121 16-50 (438)
81 PLN02696 1-deoxy-D-xylulose-5- 92.3 0.92 2E-05 46.4 9.8 110 86-206 57-178 (454)
82 COG0569 TrkA K+ transport syst 92.3 0.25 5.3E-06 45.4 5.2 98 87-210 1-102 (225)
83 PRK08410 2-hydroxyacid dehydro 92.1 0.19 4.2E-06 48.3 4.5 32 86-120 145-176 (311)
84 TIGR03736 PRTRC_ThiF PRTRC sys 91.7 0.45 9.8E-06 44.7 6.4 108 85-197 10-127 (244)
85 PRK06487 glycerate dehydrogena 91.6 0.24 5.2E-06 47.7 4.5 32 86-120 148-179 (317)
86 PRK14030 glutamate dehydrogena 91.4 1.4 3.1E-05 45.0 9.9 122 56-202 207-338 (445)
87 PRK06932 glycerate dehydrogena 91.0 0.3 6.4E-06 47.1 4.4 31 86-119 147-177 (314)
88 CHL00194 ycf39 Ycf39; Provisio 90.9 0.63 1.4E-05 43.7 6.5 31 87-120 1-32 (317)
89 COG0111 SerA Phosphoglycerate 90.5 0.36 7.9E-06 47.0 4.6 32 86-120 142-173 (324)
90 COG0673 MviM Predicted dehydro 90.3 0.83 1.8E-05 42.8 6.7 97 85-209 2-99 (342)
91 PLN02928 oxidoreductase family 90.1 0.4 8.6E-06 46.9 4.5 32 86-120 159-190 (347)
92 PF03807 F420_oxidored: NADP o 90.1 0.53 1.2E-05 36.3 4.4 43 88-131 1-43 (96)
93 PRK06436 glycerate dehydrogena 89.9 0.44 9.6E-06 45.9 4.6 32 86-120 122-153 (303)
94 PRK07574 formate dehydrogenase 89.9 0.42 9.2E-06 47.7 4.6 32 86-120 192-223 (385)
95 TIGR03649 ergot_EASG ergot alk 89.9 1.1 2.3E-05 41.1 6.9 30 88-120 1-31 (285)
96 PRK08229 2-dehydropantoate 2-r 89.8 1.5 3.2E-05 41.7 8.0 33 85-120 1-33 (341)
97 PRK13243 glyoxylate reductase; 89.7 0.45 9.8E-06 46.2 4.6 32 86-120 150-181 (333)
98 PRK15409 bifunctional glyoxyla 89.6 0.46 9.9E-06 46.1 4.5 31 86-119 145-176 (323)
99 PF03446 NAD_binding_2: NAD bi 89.5 0.6 1.3E-05 40.2 4.7 31 87-120 2-32 (163)
100 COG2910 Putative NADH-flavin r 89.5 1.4 3.1E-05 40.6 7.3 31 87-120 1-32 (211)
101 PRK11790 D-3-phosphoglycerate 89.4 0.49 1.1E-05 47.4 4.6 32 86-120 151-182 (409)
102 KOG1203 Predicted dehydrogenas 89.2 0.58 1.3E-05 47.3 5.0 25 85-109 78-103 (411)
103 PTZ00079 NADP-specific glutama 89.0 1.6 3.4E-05 44.8 8.0 123 55-203 215-348 (454)
104 PRK15469 ghrA bifunctional gly 88.7 0.62 1.4E-05 45.0 4.7 32 86-120 136-167 (312)
105 PF05368 NmrA: NmrA-like famil 88.6 0.38 8.2E-06 42.9 2.9 96 89-209 1-103 (233)
106 TIGR02130 dapB_plant dihydrodi 88.3 1.2 2.5E-05 42.8 6.2 29 87-118 1-30 (275)
107 PF13380 CoA_binding_2: CoA bi 88.1 1.3 2.9E-05 36.5 5.7 82 88-208 2-87 (116)
108 PLN00016 RNA-binding protein; 88.1 1.5 3.3E-05 42.4 6.9 33 85-120 51-88 (378)
109 TIGR01202 bchC 2-desacetyl-2-h 88.0 2.3 4.9E-05 39.9 7.9 91 175-274 199-291 (308)
110 PF03435 Saccharop_dh: Sacchar 88.0 0.38 8.2E-06 46.8 2.7 95 89-207 1-96 (386)
111 COG1052 LdhA Lactate dehydroge 88.0 0.68 1.5E-05 45.2 4.4 32 86-120 146-177 (324)
112 PRK12480 D-lactate dehydrogena 87.8 0.78 1.7E-05 44.6 4.7 32 86-120 146-177 (330)
113 PLN02306 hydroxypyruvate reduc 87.7 0.73 1.6E-05 46.0 4.5 31 86-119 165-196 (386)
114 PF02629 CoA_binding: CoA bind 87.6 0.75 1.6E-05 36.4 3.8 92 86-209 3-95 (96)
115 PRK12475 thiamine/molybdopteri 87.5 2.7 5.9E-05 41.0 8.4 185 86-277 24-231 (338)
116 PLN03139 formate dehydrogenase 87.5 0.71 1.5E-05 46.1 4.3 32 86-120 199-230 (386)
117 PRK15438 erythronate-4-phospha 87.3 0.82 1.8E-05 45.6 4.6 56 56-119 91-146 (378)
118 PF10727 Rossmann-like: Rossma 86.8 0.54 1.2E-05 40.0 2.6 33 85-120 9-41 (127)
119 PLN02256 arogenate dehydrogena 86.6 1.5 3.2E-05 42.2 5.9 34 85-121 35-68 (304)
120 cd08230 glucose_DH Glucose deh 85.9 5.5 0.00012 37.8 9.3 142 87-255 174-316 (355)
121 PTZ00117 malate dehydrogenase; 85.8 4.2 9.2E-05 39.2 8.6 24 85-108 4-27 (319)
122 PRK11880 pyrroline-5-carboxyla 85.5 1.3 2.8E-05 40.6 4.7 24 85-108 1-24 (267)
123 PF00056 Ldh_1_N: lactate/mala 85.4 2.5 5.4E-05 36.0 6.0 23 87-109 1-24 (141)
124 cd01483 E1_enzyme_family Super 85.3 0.97 2.1E-05 37.8 3.4 21 88-108 1-21 (143)
125 cd01075 NAD_bind_Leu_Phe_Val_D 85.1 1.4 3.1E-05 39.7 4.7 29 87-118 29-57 (200)
126 PRK11559 garR tartronate semia 84.7 1.4 3E-05 41.2 4.5 32 85-119 1-32 (296)
127 PRK00257 erythronate-4-phospha 84.1 1.4 3.1E-05 43.9 4.6 55 57-119 92-146 (381)
128 TIGR01327 PGDH D-3-phosphoglyc 84.0 1.4 3E-05 45.5 4.6 32 86-120 138-169 (525)
129 PRK13581 D-3-phosphoglycerate 83.7 1.4 3.1E-05 45.3 4.6 32 86-120 140-171 (526)
130 PRK08605 D-lactate dehydrogena 83.3 1.6 3.5E-05 42.3 4.5 32 86-119 146-177 (332)
131 PF02254 TrkA_N: TrkA-N domain 83.1 2.4 5.2E-05 33.6 4.7 29 89-120 1-29 (116)
132 PRK13403 ketol-acid reductoiso 82.9 1.8 3.8E-05 42.8 4.6 32 87-121 17-48 (335)
133 PRK07417 arogenate dehydrogena 82.9 1.7 3.7E-05 40.6 4.4 31 87-120 1-31 (279)
134 PRK06522 2-dehydropantoate 2-r 82.5 6.7 0.00014 36.3 8.1 31 87-120 1-31 (304)
135 PRK07819 3-hydroxybutyryl-CoA 82.5 7.1 0.00015 37.0 8.4 153 87-258 6-180 (286)
136 COG0771 MurD UDP-N-acetylmuram 82.1 7.5 0.00016 39.8 8.9 88 86-202 7-95 (448)
137 COG1063 Tdh Threonine dehydrog 81.9 2.6 5.6E-05 40.9 5.3 74 175-255 237-312 (350)
138 PLN02712 arogenate dehydrogena 81.9 2.1 4.5E-05 45.7 5.0 34 85-121 51-84 (667)
139 COG0039 Mdh Malate/lactate deh 81.8 4.2 9.1E-05 39.8 6.7 177 87-299 1-196 (313)
140 PRK14031 glutamate dehydrogena 81.5 6.2 0.00013 40.4 8.0 54 55-120 206-259 (444)
141 PRK06223 malate dehydrogenase; 81.5 6.6 0.00014 37.0 7.8 30 87-118 3-32 (307)
142 PLN02819 lysine-ketoglutarate 81.2 3.6 7.7E-05 46.2 6.7 92 86-202 569-674 (1042)
143 PLN02712 arogenate dehydrogena 81.2 2.1 4.6E-05 45.6 4.8 34 85-121 368-401 (667)
144 COG3804 Uncharacterized conser 81.0 2.1 4.6E-05 41.8 4.3 34 85-120 1-34 (350)
145 PRK01438 murD UDP-N-acetylmura 80.6 10 0.00023 37.9 9.3 87 87-201 17-103 (480)
146 PRK07634 pyrroline-5-carboxyla 80.5 3.1 6.8E-05 37.5 5.1 35 86-120 4-39 (245)
147 KOG1502 Flavonol reductase/cin 80.5 7.5 0.00016 38.3 8.0 47 85-134 5-53 (327)
148 PTZ00082 L-lactate dehydrogena 80.3 3.1 6.7E-05 40.3 5.3 22 87-108 7-28 (321)
149 PRK14619 NAD(P)H-dependent gly 79.9 2.9 6.4E-05 39.6 4.9 33 85-120 3-35 (308)
150 PRK09599 6-phosphogluconate de 79.4 2.8 6.1E-05 39.6 4.6 31 87-120 1-31 (301)
151 TIGR02853 spore_dpaA dipicolin 78.6 3 6.6E-05 39.7 4.5 31 87-120 152-182 (287)
152 cd05293 LDH_1 A subgroup of L- 78.3 1.3 2.9E-05 42.7 2.1 22 87-108 4-25 (312)
153 PRK15116 sulfur acceptor prote 78.1 3.9 8.5E-05 39.0 5.1 23 86-108 30-52 (268)
154 COG0287 TyrA Prephenate dehydr 77.8 3.4 7.4E-05 39.5 4.6 24 85-108 2-25 (279)
155 PRK00066 ldh L-lactate dehydro 77.5 4.7 0.0001 38.9 5.5 23 86-108 6-28 (315)
156 PRK08507 prephenate dehydrogen 77.3 3.9 8.4E-05 38.0 4.8 32 87-119 1-32 (275)
157 PRK12490 6-phosphogluconate de 77.1 3.6 7.9E-05 38.9 4.6 31 87-120 1-31 (299)
158 PTZ00075 Adenosylhomocysteinas 77.0 3.6 7.8E-05 42.5 4.8 31 86-119 254-284 (476)
159 cd00755 YgdL_like Family of ac 77.0 6.4 0.00014 36.6 6.0 22 87-108 12-33 (231)
160 TIGR00872 gnd_rel 6-phosphoglu 76.8 3.7 8E-05 38.9 4.5 31 87-120 1-31 (298)
161 COG1748 LYS9 Saccharopine dehy 76.6 5.8 0.00013 39.9 6.0 98 87-207 2-99 (389)
162 TIGR01019 sucCoAalpha succinyl 76.4 7.9 0.00017 37.2 6.7 31 87-119 7-38 (286)
163 TIGR03366 HpnZ_proposed putati 75.6 15 0.00033 33.7 8.2 137 87-254 122-260 (280)
164 PRK09496 trkA potassium transp 75.6 4.2 9.1E-05 40.0 4.7 31 87-120 1-31 (453)
165 PRK06476 pyrroline-5-carboxyla 75.4 4.7 0.0001 37.1 4.7 22 87-108 1-22 (258)
166 TIGR01505 tartro_sem_red 2-hyd 75.3 3.6 7.8E-05 38.4 4.0 30 88-120 1-30 (291)
167 KOG0069 Glyoxylate/hydroxypyru 75.1 2.6 5.6E-05 41.6 3.1 23 85-107 161-183 (336)
168 PLN02688 pyrroline-5-carboxyla 74.9 4.7 0.0001 37.0 4.6 34 87-120 1-35 (266)
169 PLN02494 adenosylhomocysteinas 74.7 7.3 0.00016 40.3 6.3 31 87-120 255-285 (477)
170 PF13460 NAD_binding_10: NADH( 74.6 5.3 0.00012 33.8 4.6 29 89-120 1-30 (183)
171 TIGR01087 murD UDP-N-acetylmur 74.4 14 0.00031 36.3 8.1 84 88-201 1-87 (433)
172 COG5322 Predicted dehydrogenas 74.2 4.1 9E-05 39.7 4.1 62 176-243 230-292 (351)
173 PRK03659 glutathione-regulated 73.9 4.1 8.9E-05 42.7 4.4 32 86-120 400-431 (601)
174 PRK09880 L-idonate 5-dehydroge 73.9 15 0.00032 34.8 7.8 90 87-202 171-261 (343)
175 PF03721 UDPG_MGDP_dh_N: UDP-g 73.7 4.6 0.0001 36.0 4.1 30 87-119 1-30 (185)
176 TIGR02717 AcCoA-syn-alpha acet 73.1 14 0.00029 37.5 7.7 84 86-206 7-94 (447)
177 KOG2741 Dimeric dihydrodiol de 73.0 4.9 0.00011 40.0 4.4 41 84-125 4-44 (351)
178 PRK08644 thiamine biosynthesis 72.8 1.9 4.1E-05 39.3 1.4 23 86-108 28-50 (212)
179 PRK00683 murD UDP-N-acetylmura 72.8 7.9 0.00017 38.3 5.9 82 87-202 4-85 (418)
180 PRK03562 glutathione-regulated 72.7 4.2 9.2E-05 42.8 4.1 32 86-120 400-431 (621)
181 cd00757 ThiF_MoeB_HesA_family 72.4 2.6 5.6E-05 38.4 2.2 22 87-108 22-43 (228)
182 PLN02602 lactate dehydrogenase 72.4 2.5 5.4E-05 41.7 2.2 149 87-266 38-205 (350)
183 PF00208 ELFV_dehydrog: Glutam 72.3 5.2 0.00011 37.5 4.2 33 86-121 32-64 (244)
184 PRK03369 murD UDP-N-acetylmura 71.9 15 0.00032 37.4 7.7 83 87-201 13-95 (488)
185 PRK06718 precorrin-2 dehydroge 71.7 43 0.00094 30.2 10.0 31 87-120 11-41 (202)
186 cd05291 HicDH_like L-2-hydroxy 71.4 6.5 0.00014 37.4 4.8 31 88-119 2-32 (306)
187 PRK07502 cyclohexadienyl dehyd 71.2 6.7 0.00014 37.1 4.8 32 87-119 7-38 (307)
188 cd01338 MDH_choloroplast_like 71.0 11 0.00023 36.7 6.2 150 86-263 2-176 (322)
189 PF02737 3HCDH_N: 3-hydroxyacy 70.4 7.5 0.00016 34.3 4.6 30 88-120 1-30 (180)
190 PRK12491 pyrroline-5-carboxyla 70.4 7.6 0.00017 36.6 4.9 35 85-119 1-36 (272)
191 PLN00141 Tic62-NAD(P)-related 70.4 9.3 0.0002 34.5 5.3 32 85-119 16-48 (251)
192 cd05294 LDH-like_MDH_nadp A la 70.3 11 0.00025 36.1 6.2 32 87-119 1-33 (309)
193 PRK00421 murC UDP-N-acetylmura 70.2 21 0.00044 35.8 8.2 83 87-201 8-91 (461)
194 TIGR03201 dearomat_had 6-hydro 70.0 28 0.0006 33.0 8.7 138 87-255 168-313 (349)
195 TIGR00936 ahcY adenosylhomocys 70.0 6.6 0.00014 39.7 4.6 31 86-119 195-225 (406)
196 PLN02586 probable cinnamyl alc 70.0 17 0.00038 34.9 7.4 30 87-119 185-214 (360)
197 PRK10669 putative cation:proto 69.8 5.6 0.00012 41.0 4.2 32 86-120 417-448 (558)
198 PRK05597 molybdopterin biosynt 69.5 6.5 0.00014 38.6 4.4 23 86-108 28-50 (355)
199 PRK15059 tartronate semialdehy 69.2 7.1 0.00015 37.1 4.5 30 87-119 1-30 (292)
200 KOG0068 D-3-phosphoglycerate d 69.2 5 0.00011 40.2 3.5 29 87-118 147-175 (406)
201 TIGR03026 NDP-sugDHase nucleot 69.0 6.4 0.00014 38.9 4.3 31 87-120 1-31 (411)
202 cd05290 LDH_3 A subgroup of L- 68.8 3 6.6E-05 40.2 1.9 21 88-108 1-21 (307)
203 PF02670 DXP_reductoisom: 1-de 68.7 8 0.00017 33.2 4.2 42 89-131 1-43 (129)
204 cd01486 Apg7 Apg7 is an E1-lik 68.5 3.2 6.9E-05 40.6 2.0 31 88-121 1-31 (307)
205 PRK05479 ketol-acid reductoiso 68.5 7.5 0.00016 38.2 4.6 31 86-119 17-47 (330)
206 PRK00141 murD UDP-N-acetylmura 68.2 29 0.00063 35.1 8.9 83 87-201 16-99 (473)
207 COG0334 GdhA Glutamate dehydro 67.3 30 0.00064 35.3 8.6 34 85-121 206-239 (411)
208 PRK04690 murD UDP-N-acetylmura 66.8 37 0.0008 34.4 9.3 86 87-201 9-94 (468)
209 PLN03209 translocon at the inn 66.6 26 0.00056 37.1 8.3 32 85-119 79-111 (576)
210 PRK00094 gpsA NAD(P)H-dependen 66.6 9.6 0.00021 35.6 4.8 31 87-120 2-32 (325)
211 PRK08306 dipicolinate synthase 66.3 9.4 0.0002 36.5 4.7 32 86-120 152-183 (296)
212 PRK15461 NADH-dependent gamma- 66.1 8.8 0.00019 36.3 4.4 31 87-120 2-32 (296)
213 cd08239 THR_DH_like L-threonin 65.8 14 0.0003 34.6 5.6 136 87-255 165-303 (339)
214 cd08281 liver_ADH_like1 Zinc-d 65.7 20 0.00043 34.4 6.9 95 87-207 193-290 (371)
215 PRK11199 tyrA bifunctional cho 65.6 8.4 0.00018 38.0 4.3 31 86-119 98-129 (374)
216 PRK03803 murD UDP-N-acetylmura 65.6 38 0.00082 33.7 9.0 84 88-201 8-93 (448)
217 PLN02545 3-hydroxybutyryl-CoA 65.5 9.9 0.00021 35.6 4.6 31 87-120 5-35 (295)
218 PRK05678 succinyl-CoA syntheta 65.3 21 0.00045 34.5 6.9 32 86-119 8-40 (291)
219 PRK02472 murD UDP-N-acetylmura 65.3 39 0.00085 33.3 9.0 85 87-201 6-93 (447)
220 cd08242 MDR_like Medium chain 64.9 30 0.00066 31.8 7.7 84 87-202 157-240 (319)
221 PRK06249 2-dehydropantoate 2-r 64.9 11 0.00024 35.8 4.8 24 85-108 4-27 (313)
222 PRK06129 3-hydroxyacyl-CoA deh 64.5 10 0.00022 36.0 4.5 31 87-120 3-33 (308)
223 PRK06928 pyrroline-5-carboxyla 64.3 12 0.00026 35.1 4.9 34 87-120 2-36 (277)
224 TIGR01915 npdG NADPH-dependent 64.1 12 0.00026 33.7 4.7 30 87-119 1-31 (219)
225 cd08298 CAD2 Cinnamyl alcohol 64.1 79 0.0017 29.1 10.3 128 87-254 169-296 (329)
226 PRK07679 pyrroline-5-carboxyla 64.0 12 0.00025 35.0 4.8 34 87-120 4-38 (279)
227 TIGR00465 ilvC ketol-acid redu 63.9 10 0.00022 36.8 4.5 31 87-120 4-34 (314)
228 PRK09260 3-hydroxybutyryl-CoA 63.8 11 0.00023 35.3 4.5 30 87-119 2-31 (288)
229 PRK05476 S-adenosyl-L-homocyst 63.8 10 0.00022 38.6 4.6 30 87-119 213-242 (425)
230 PRK02006 murD UDP-N-acetylmura 63.2 35 0.00076 34.6 8.4 30 87-120 8-37 (498)
231 PRK01710 murD UDP-N-acetylmura 63.1 21 0.00045 35.8 6.6 87 87-201 15-102 (458)
232 TIGR02354 thiF_fam2 thiamine b 62.0 4.5 9.7E-05 36.6 1.6 33 86-121 21-53 (200)
233 PRK06035 3-hydroxyacyl-CoA deh 61.8 13 0.00028 34.9 4.6 31 87-120 4-34 (291)
234 PRK14106 murD UDP-N-acetylmura 61.8 41 0.00089 33.2 8.4 88 87-201 6-93 (450)
235 PRK07680 late competence prote 61.5 14 0.00031 34.3 4.8 22 87-108 1-22 (273)
236 PRK09496 trkA potassium transp 61.2 14 0.00029 36.4 4.9 32 86-120 231-262 (453)
237 PRK14618 NAD(P)H-dependent gly 61.2 13 0.00028 35.4 4.7 31 87-120 5-35 (328)
238 TIGR02355 moeB molybdopterin s 61.2 5.8 0.00012 36.9 2.2 22 87-108 25-46 (240)
239 PLN02178 cinnamyl-alcohol dehy 60.7 44 0.00096 32.5 8.3 133 87-254 180-313 (375)
240 PRK08818 prephenate dehydrogen 60.5 13 0.00029 37.0 4.7 31 86-118 4-35 (370)
241 cd08237 ribitol-5-phosphate_DH 60.4 53 0.0012 31.2 8.7 32 87-119 165-196 (341)
242 cd01487 E1_ThiF_like E1_ThiF_l 60.4 7.7 0.00017 34.1 2.7 21 88-108 1-21 (174)
243 PLN02427 UDP-apiose/xylose syn 60.3 16 0.00035 35.2 5.2 34 85-120 13-47 (386)
244 PRK06130 3-hydroxybutyryl-CoA 60.0 16 0.00034 34.5 4.9 30 87-119 5-34 (311)
245 PRK12771 putative glutamate sy 59.7 4.4 9.6E-05 41.7 1.3 32 86-120 137-168 (564)
246 PRK06545 prephenate dehydrogen 59.1 13 0.00029 36.2 4.4 21 88-108 2-22 (359)
247 PRK05865 hypothetical protein; 59.0 33 0.00071 38.0 7.7 31 87-120 1-32 (854)
248 PRK05808 3-hydroxybutyryl-CoA 58.9 15 0.00032 34.3 4.5 30 87-119 4-33 (282)
249 PLN02350 phosphogluconate dehy 58.0 12 0.00026 38.7 4.0 132 86-229 6-157 (493)
250 PTZ00431 pyrroline carboxylate 57.8 10 0.00022 35.2 3.2 22 87-108 4-25 (260)
251 PLN00106 malate dehydrogenase 57.4 24 0.00052 34.5 5.8 22 87-108 19-41 (323)
252 PRK07531 bifunctional 3-hydrox 57.3 16 0.00036 37.3 4.9 32 86-120 4-35 (495)
253 PRK04308 murD UDP-N-acetylmura 57.2 74 0.0016 31.6 9.3 87 87-201 6-92 (445)
254 COG2085 Predicted dinucleotide 56.9 16 0.00036 33.9 4.3 31 87-120 2-32 (211)
255 PRK07530 3-hydroxybutyryl-CoA 56.6 19 0.00041 33.7 4.8 30 87-119 5-34 (292)
256 PLN02572 UDP-sulfoquinovose sy 56.3 23 0.0005 35.6 5.6 32 85-119 46-78 (442)
257 COG0345 ProC Pyrroline-5-carbo 55.9 19 0.00042 34.4 4.8 43 87-131 2-45 (266)
258 PRK11064 wecC UDP-N-acetyl-D-m 55.6 17 0.00036 36.4 4.5 31 87-120 4-34 (415)
259 cd05213 NAD_bind_Glutamyl_tRNA 55.4 14 0.0003 35.4 3.8 33 86-120 178-210 (311)
260 cd05191 NAD_bind_amino_acid_DH 55.4 20 0.00044 27.5 4.0 23 86-108 23-45 (86)
261 PRK05690 molybdopterin biosynt 55.2 8 0.00017 35.9 2.0 23 86-108 32-54 (245)
262 PRK08655 prephenate dehydrogen 55.1 18 0.00039 36.5 4.7 30 87-119 1-31 (437)
263 PLN02778 3,5-epimerase/4-reduc 55.1 21 0.00046 33.5 4.9 26 84-109 7-33 (298)
264 COG1064 AdhP Zn-dependent alco 54.5 62 0.0013 32.1 8.1 133 86-254 167-301 (339)
265 PF01262 AlaDh_PNT_C: Alanine 54.4 25 0.00055 30.3 4.9 33 85-120 19-51 (168)
266 TIGR00873 gnd 6-phosphoglucona 54.2 14 0.00031 37.8 3.8 31 88-121 1-31 (467)
267 PRK15057 UDP-glucose 6-dehydro 54.0 18 0.00039 36.1 4.4 39 87-131 1-39 (388)
268 COG1062 AdhC Zn-dependent alco 54.0 25 0.00053 35.3 5.2 101 87-210 187-288 (366)
269 PRK06444 prephenate dehydrogen 54.0 17 0.00036 33.1 3.8 22 87-108 1-23 (197)
270 PRK15182 Vi polysaccharide bio 53.9 17 0.00036 36.7 4.2 31 86-120 6-36 (425)
271 PTZ00142 6-phosphogluconate de 53.8 16 0.00035 37.5 4.1 31 87-120 2-32 (470)
272 PF00670 AdoHcyase_NAD: S-aden 53.8 22 0.00048 31.7 4.5 22 87-108 24-45 (162)
273 TIGR02818 adh_III_F_hyde S-(hy 53.7 52 0.0011 31.6 7.4 30 87-119 187-217 (368)
274 PRK05442 malate dehydrogenase; 53.4 26 0.00057 34.1 5.4 153 85-265 3-180 (326)
275 cd08277 liver_alcohol_DH_like 53.4 50 0.0011 31.5 7.2 30 87-119 186-216 (365)
276 PRK03806 murD UDP-N-acetylmura 53.4 1.1E+02 0.0023 30.4 9.7 87 87-207 7-94 (438)
277 PRK00258 aroE shikimate 5-dehy 53.4 51 0.0011 30.9 7.1 33 87-121 124-156 (278)
278 cd00401 AdoHcyase S-adenosyl-L 53.2 21 0.00045 36.2 4.7 29 87-118 203-231 (413)
279 cd01336 MDH_cytoplasmic_cytoso 52.9 14 0.0003 35.9 3.3 24 85-108 1-25 (325)
280 PLN02166 dTDP-glucose 4,6-dehy 52.7 22 0.00048 35.7 4.9 33 85-120 119-152 (436)
281 cd08301 alcohol_DH_plants Plan 52.6 31 0.00068 32.9 5.7 32 86-120 188-220 (369)
282 cd05283 CAD1 Cinnamyl alcohol 52.5 78 0.0017 29.6 8.3 87 87-201 171-257 (337)
283 COG0702 Predicted nucleoside-d 52.4 21 0.00045 31.8 4.2 31 87-120 1-32 (275)
284 cd08294 leukotriene_B4_DH_like 52.2 47 0.001 30.5 6.6 94 87-206 145-240 (329)
285 TIGR00518 alaDH alanine dehydr 51.9 26 0.00056 34.6 5.1 32 86-120 167-198 (370)
286 PRK12921 2-dehydropantoate 2-r 51.7 23 0.0005 32.8 4.5 30 87-119 1-30 (305)
287 PRK10537 voltage-gated potassi 51.4 30 0.00065 34.7 5.5 31 87-120 241-271 (393)
288 TIGR00243 Dxr 1-deoxy-D-xylulo 51.3 21 0.00045 36.1 4.3 44 87-131 2-46 (389)
289 COG0743 Dxr 1-deoxy-D-xylulose 51.1 20 0.00043 36.1 4.1 44 87-131 2-46 (385)
290 TIGR03451 mycoS_dep_FDH mycoth 50.6 53 0.0012 31.2 6.9 31 86-119 177-208 (358)
291 PRK08293 3-hydroxybutyryl-CoA 49.7 27 0.00059 32.7 4.7 30 87-119 4-33 (287)
292 PF01488 Shikimate_DH: Shikima 49.5 35 0.00075 28.5 4.9 94 86-208 12-108 (135)
293 PLN02695 GDP-D-mannose-3',5'-e 49.5 28 0.0006 33.8 4.8 31 86-119 21-52 (370)
294 TIGR00507 aroE shikimate 5-deh 49.4 52 0.0011 30.6 6.5 31 87-120 118-148 (270)
295 PRK07878 molybdopterin biosynt 49.0 35 0.00075 33.9 5.5 23 86-108 42-64 (392)
296 cd08300 alcohol_DH_class_III c 49.0 80 0.0017 30.2 7.9 31 86-119 187-218 (368)
297 PRK07066 3-hydroxybutyryl-CoA 48.6 27 0.0006 34.0 4.6 30 87-119 8-37 (321)
298 TIGR01759 MalateDH-SF1 malate 48.6 36 0.00078 33.2 5.5 24 85-108 2-26 (323)
299 PLN02206 UDP-glucuronate decar 48.5 34 0.00073 34.5 5.4 33 85-120 118-151 (442)
300 PRK10675 UDP-galactose-4-epime 48.0 29 0.00064 32.3 4.6 30 87-119 1-31 (338)
301 TIGR01035 hemA glutamyl-tRNA r 48.0 27 0.0006 34.9 4.7 32 87-120 181-212 (417)
302 PLN02514 cinnamyl-alcohol dehy 47.7 61 0.0013 31.0 6.9 137 87-259 182-319 (357)
303 PF00070 Pyr_redox: Pyridine n 47.6 45 0.00097 24.9 4.8 30 88-120 1-30 (80)
304 PRK02705 murD UDP-N-acetylmura 47.3 41 0.00088 33.4 5.7 29 88-120 2-30 (459)
305 cd08235 iditol_2_DH_like L-idi 47.0 1.3E+02 0.0028 27.9 8.7 30 87-119 167-197 (343)
306 PRK15181 Vi polysaccharide bio 46.7 31 0.00066 32.9 4.6 31 87-120 16-47 (348)
307 TIGR01381 E1_like_apg7 E1-like 46.7 12 0.00025 40.3 1.8 23 86-108 338-360 (664)
308 PF04321 RmlD_sub_bind: RmlD s 46.4 30 0.00064 32.5 4.4 31 87-120 1-32 (286)
309 cd08269 Zn_ADH9 Alcohol dehydr 46.3 74 0.0016 28.8 6.9 31 87-120 131-162 (312)
310 PRK04965 NADH:flavorubredoxin 46.3 66 0.0014 31.0 6.9 35 85-120 1-35 (377)
311 COG1023 Gnd Predicted 6-phosph 46.1 22 0.00047 34.4 3.4 30 87-119 1-30 (300)
312 cd01065 NAD_bind_Shikimate_DH 45.9 25 0.00054 29.1 3.4 23 86-108 19-41 (155)
313 cd01484 E1-2_like Ubiquitin ac 45.8 10 0.00023 35.3 1.2 21 88-108 1-21 (234)
314 PLN00112 malate dehydrogenase 45.7 16 0.00035 37.4 2.6 24 85-108 99-123 (444)
315 PRK00045 hemA glutamyl-tRNA re 45.7 30 0.00066 34.6 4.6 32 86-120 182-214 (423)
316 KOG0455 Homoserine dehydrogena 45.6 21 0.00045 34.7 3.2 37 85-121 2-44 (364)
317 PRK04663 murD UDP-N-acetylmura 45.2 1.7E+02 0.0036 29.2 9.7 85 87-201 8-93 (438)
318 PLN02657 3,8-divinyl protochlo 45.2 33 0.00072 33.7 4.7 32 86-120 60-92 (390)
319 TIGR01761 thiaz-red thiazoliny 44.9 34 0.00074 33.7 4.7 35 85-121 2-36 (343)
320 PRK04148 hypothetical protein; 44.4 40 0.00088 29.1 4.5 30 87-120 18-47 (134)
321 PLN02740 Alcohol dehydrogenase 44.2 44 0.00095 32.3 5.3 30 87-119 200-230 (381)
322 PRK14192 bifunctional 5,10-met 44.2 84 0.0018 30.1 7.1 22 87-108 160-182 (283)
323 PRK05600 thiamine biosynthesis 44.0 12 0.00025 37.2 1.3 23 86-108 41-63 (370)
324 TIGR01757 Malate-DH_plant mala 43.9 39 0.00085 34.0 5.0 25 85-109 43-68 (387)
325 PRK05708 2-dehydropantoate 2-r 43.8 35 0.00076 32.4 4.5 22 86-107 2-23 (305)
326 PRK06988 putative formyltransf 43.5 35 0.00077 32.9 4.5 31 85-118 1-31 (312)
327 cd05188 MDR Medium chain reduc 43.4 1.3E+02 0.0028 26.2 7.8 31 87-120 136-166 (271)
328 PLN02827 Alcohol dehydrogenase 43.3 1E+02 0.0022 29.8 7.7 31 86-119 194-225 (378)
329 cd08233 butanediol_DH_like (2R 43.3 70 0.0015 30.1 6.4 30 87-119 174-204 (351)
330 KOG1399 Flavin-containing mono 43.3 33 0.00072 35.1 4.5 33 85-120 5-37 (448)
331 PTZ00357 methyltransferase; Pr 43.2 72 0.0016 35.3 7.0 104 85-198 700-815 (1072)
332 PLN02896 cinnamyl-alcohol dehy 43.1 44 0.00095 31.7 5.0 32 86-120 10-42 (353)
333 PRK02318 mannitol-1-phosphate 42.5 32 0.0007 33.9 4.1 31 87-119 1-31 (381)
334 PRK07326 short chain dehydroge 42.3 43 0.00093 29.2 4.5 31 87-120 7-38 (237)
335 PRK06719 precorrin-2 dehydroge 42.1 47 0.001 28.8 4.6 30 87-119 14-43 (157)
336 cd08245 CAD Cinnamyl alcohol d 41.8 95 0.0021 28.6 7.0 31 87-120 164-194 (330)
337 PRK11908 NAD-dependent epimera 41.6 43 0.00094 31.6 4.7 32 87-120 2-34 (347)
338 PF01370 Epimerase: NAD depend 41.1 51 0.0011 28.5 4.8 30 89-121 1-31 (236)
339 PRK07877 hypothetical protein; 40.7 14 0.0003 40.1 1.4 107 86-201 107-222 (722)
340 PRK08017 oxidoreductase; Provi 40.6 49 0.0011 29.2 4.7 31 87-120 3-34 (256)
341 cd01339 LDH-like_MDH L-lactate 40.5 41 0.00088 31.8 4.4 27 89-118 1-28 (300)
342 PLN02240 UDP-glucose 4-epimera 40.4 50 0.0011 30.9 4.9 32 86-120 5-37 (352)
343 PRK10309 galactitol-1-phosphat 40.4 1E+02 0.0022 29.0 7.0 22 87-108 162-183 (347)
344 PF02558 ApbA: Ketopantoate re 40.1 53 0.0012 27.1 4.6 29 89-120 1-29 (151)
345 cd08255 2-desacetyl-2-hydroxye 40.0 1.2E+02 0.0026 27.1 7.2 85 87-201 99-184 (277)
346 PRK09291 short chain dehydroge 40.0 51 0.0011 29.1 4.7 31 87-120 3-34 (257)
347 PLN02583 cinnamoyl-CoA reducta 39.8 51 0.0011 30.6 4.9 30 87-119 7-37 (297)
348 KOG2380 Prephenate dehydrogena 38.9 28 0.00061 35.3 3.0 24 85-108 51-74 (480)
349 PRK14573 bifunctional D-alanyl 38.9 1.3E+02 0.0028 32.7 8.3 82 88-201 6-88 (809)
350 TIGR03466 HpnA hopanoid-associ 38.9 45 0.00096 30.6 4.3 31 87-120 1-32 (328)
351 cd08254 hydroxyacyl_CoA_DH 6-h 38.7 1.5E+02 0.0033 27.1 7.8 96 87-206 167-262 (338)
352 PLN02353 probable UDP-glucose 38.4 51 0.0011 33.9 4.9 32 87-119 2-33 (473)
353 PRK12745 3-ketoacyl-(acyl-carr 37.7 58 0.0013 28.8 4.7 30 87-119 3-33 (256)
354 PRK07411 hypothetical protein; 37.5 16 0.00035 36.4 1.1 184 86-278 38-246 (390)
355 cd08270 MDR4 Medium chain dehy 37.5 2.6E+02 0.0057 25.1 9.0 88 87-207 134-222 (305)
356 COG0451 WcaG Nucleoside-diphos 37.4 51 0.0011 29.9 4.4 30 88-120 2-32 (314)
357 cd08296 CAD_like Cinnamyl alco 37.1 87 0.0019 29.2 6.0 95 87-207 165-259 (333)
358 TIGR01214 rmlD dTDP-4-dehydror 37.0 51 0.0011 29.8 4.3 30 88-120 1-31 (287)
359 cd05280 MDR_yhdh_yhfp Yhdh and 36.8 1.2E+02 0.0026 27.6 6.7 88 88-201 149-237 (325)
360 PF00899 ThiF: ThiF family; I 36.8 39 0.00084 27.9 3.2 106 87-198 3-114 (135)
361 PLN03154 putative allyl alcoho 36.8 1.2E+02 0.0026 28.9 7.0 30 87-119 160-190 (348)
362 PRK05653 fabG 3-ketoacyl-(acyl 36.7 67 0.0015 27.8 4.8 31 87-120 6-37 (246)
363 cd08231 MDR_TM0436_like Hypoth 36.6 1.4E+02 0.0031 28.1 7.4 30 87-119 179-209 (361)
364 TIGR02279 PaaC-3OHAcCoADH 3-hy 36.5 50 0.0011 34.1 4.6 31 87-120 6-36 (503)
365 cd08284 FDH_like_2 Glutathione 36.4 1.1E+02 0.0024 28.3 6.6 29 87-118 169-198 (344)
366 PRK07236 hypothetical protein; 36.4 61 0.0013 31.2 4.9 33 85-120 5-37 (386)
367 PRK14806 bifunctional cyclohex 36.1 51 0.0011 35.0 4.7 33 87-120 4-36 (735)
368 cd08258 Zn_ADH4 Alcohol dehydr 36.0 2.8E+02 0.006 25.7 9.1 139 87-254 166-305 (306)
369 TIGR01181 dTDP_gluc_dehyt dTDP 35.9 53 0.0011 29.8 4.2 31 88-119 1-32 (317)
370 cd08295 double_bond_reductase_ 35.9 1.5E+02 0.0032 27.7 7.4 30 87-119 153-183 (338)
371 PLN00198 anthocyanidin reducta 35.9 56 0.0012 30.7 4.5 30 86-118 9-39 (338)
372 PLN02260 probable rhamnose bio 35.7 47 0.001 34.8 4.3 25 84-108 378-403 (668)
373 PRK08163 salicylate hydroxylas 35.7 60 0.0013 31.1 4.7 32 85-119 3-34 (396)
374 PLN02662 cinnamyl-alcohol dehy 35.6 52 0.0011 30.3 4.1 30 87-119 5-35 (322)
375 PLN02214 cinnamoyl-CoA reducta 35.5 69 0.0015 30.5 5.1 31 86-119 10-41 (342)
376 PRK08268 3-hydroxy-acyl-CoA de 35.5 54 0.0012 33.9 4.6 31 87-120 8-38 (507)
377 cd05292 LDH_2 A subgroup of L- 35.5 38 0.00082 32.4 3.3 22 87-108 1-22 (308)
378 cd08263 Zn_ADH10 Alcohol dehyd 35.4 1.9E+02 0.004 27.5 8.0 30 87-119 189-219 (367)
379 PLN02260 probable rhamnose bio 35.4 61 0.0013 34.0 5.1 35 85-120 5-40 (668)
380 PRK07023 short chain dehydroge 34.7 60 0.0013 28.6 4.3 30 87-119 2-32 (243)
381 cd08278 benzyl_alcohol_DH Benz 34.5 1.5E+02 0.0032 28.4 7.2 28 175-202 253-280 (365)
382 cd08262 Zn_ADH8 Alcohol dehydr 34.5 1.6E+02 0.0036 27.2 7.4 22 87-108 163-184 (341)
383 cd08260 Zn_ADH6 Alcohol dehydr 34.4 1.1E+02 0.0024 28.5 6.2 31 87-120 167-197 (345)
384 PF00107 ADH_zinc_N: Zinc-bind 34.3 15 0.00032 29.4 0.3 70 175-251 57-127 (130)
385 PRK10538 malonic semialdehyde 34.0 68 0.0015 28.5 4.5 31 87-120 1-32 (248)
386 TIGR02819 fdhA_non_GSH formald 33.9 1.3E+02 0.0029 29.5 6.9 31 87-120 187-217 (393)
387 PLN00203 glutamyl-tRNA reducta 33.8 49 0.0011 34.5 4.0 32 86-120 266-298 (519)
388 cd08234 threonine_DH_like L-th 33.8 2.2E+02 0.0047 26.2 8.0 91 87-202 161-252 (334)
389 PRK14620 NAD(P)H-dependent gly 33.7 67 0.0015 30.4 4.7 22 87-108 1-22 (326)
390 PRK14851 hypothetical protein; 33.6 22 0.00047 38.3 1.5 97 86-187 43-144 (679)
391 cd08236 sugar_DH NAD(P)-depend 33.6 1.4E+02 0.0031 27.7 6.8 31 87-120 161-192 (343)
392 PRK03815 murD UDP-N-acetylmura 33.6 56 0.0012 32.6 4.3 21 87-108 1-21 (401)
393 cd00650 LDH_MDH_like NAD-depen 33.3 80 0.0017 29.2 5.0 20 89-108 1-21 (263)
394 PRK00711 D-amino acid dehydrog 33.2 71 0.0015 30.8 4.8 32 87-121 1-32 (416)
395 cd01080 NAD_bind_m-THF_DH_Cycl 33.2 78 0.0017 28.0 4.7 31 86-119 44-75 (168)
396 cd05288 PGDH Prostaglandin deh 33.1 1.4E+02 0.0031 27.3 6.6 30 87-119 147-177 (329)
397 PRK12826 3-ketoacyl-(acyl-carr 33.0 69 0.0015 28.0 4.3 32 86-120 6-38 (251)
398 PRK12809 putative oxidoreducta 33.0 47 0.001 35.0 3.8 32 86-120 310-341 (639)
399 cd05279 Zn_ADH1 Liver alcohol 32.9 1.1E+02 0.0024 29.2 6.1 22 87-108 185-206 (365)
400 TIGR02825 B4_12hDH leukotriene 32.9 1.8E+02 0.0039 26.9 7.4 31 87-120 140-171 (325)
401 cd01485 E1-1_like Ubiquitin ac 32.8 35 0.00077 30.6 2.5 22 87-108 20-41 (198)
402 PRK08243 4-hydroxybenzoate 3-m 32.3 72 0.0016 30.8 4.7 33 85-120 1-33 (392)
403 KOG2250 Glutamate/leucine/phen 32.3 2.5E+02 0.0054 29.6 8.6 58 54-121 226-283 (514)
404 TIGR01763 MalateDH_bact malate 32.3 72 0.0016 30.6 4.7 22 87-108 2-23 (305)
405 TIGR01179 galE UDP-glucose-4-e 31.9 70 0.0015 29.0 4.4 29 88-119 1-30 (328)
406 PLN02858 fructose-bisphosphate 31.8 60 0.0013 37.9 4.6 32 86-120 324-355 (1378)
407 PRK12320 hypothetical protein; 31.7 69 0.0015 34.8 4.8 31 87-120 1-32 (699)
408 PRK08219 short chain dehydroge 31.7 50 0.0011 28.5 3.2 30 87-120 4-34 (227)
409 cd00300 LDH_like L-lactate deh 31.4 88 0.0019 29.8 5.1 20 89-108 1-20 (300)
410 PRK07454 short chain dehydroge 31.1 92 0.002 27.3 4.9 31 87-120 7-38 (241)
411 cd08289 MDR_yhfp_like Yhfp put 30.9 1.3E+02 0.0028 27.5 5.9 96 87-208 148-244 (326)
412 PRK07364 2-octaprenyl-6-methox 30.8 1.1E+02 0.0023 29.5 5.6 32 85-119 17-48 (415)
413 PRK10217 dTDP-glucose 4,6-dehy 30.7 72 0.0016 30.0 4.3 22 87-108 2-24 (355)
414 PLN02927 antheraxanthin epoxid 30.7 2.2E+02 0.0048 30.8 8.3 32 85-119 80-111 (668)
415 PRK05714 2-octaprenyl-3-methyl 30.7 73 0.0016 30.8 4.5 31 87-120 3-33 (405)
416 TIGR02360 pbenz_hydroxyl 4-hyd 30.5 81 0.0017 30.7 4.7 32 85-119 1-32 (390)
417 TIGR01472 gmd GDP-mannose 4,6- 30.5 73 0.0016 30.0 4.3 30 88-120 2-32 (343)
418 cd08238 sorbose_phosphate_red 30.2 2.1E+02 0.0045 28.0 7.6 34 175-208 256-289 (410)
419 PRK05086 malate dehydrogenase; 30.0 90 0.0019 30.1 4.9 81 176-264 69-170 (312)
420 PRK07231 fabG 3-ketoacyl-(acyl 29.9 91 0.002 27.3 4.6 31 87-120 6-37 (251)
421 PLN02650 dihydroflavonol-4-red 29.8 81 0.0018 29.8 4.5 30 86-118 5-35 (351)
422 TIGR01777 yfcH conserved hypot 29.5 67 0.0015 28.8 3.8 29 89-120 1-30 (292)
423 PRK12827 short chain dehydroge 29.4 94 0.002 27.1 4.6 30 87-119 7-37 (249)
424 PRK06046 alanine dehydrogenase 29.4 92 0.002 30.0 4.9 34 86-121 129-162 (326)
425 PRK05565 fabG 3-ketoacyl-(acyl 29.1 98 0.0021 26.9 4.6 29 87-118 6-35 (247)
426 COG2084 MmsB 3-hydroxyisobutyr 28.9 80 0.0017 30.6 4.3 32 87-121 1-32 (286)
427 PF00743 FMO-like: Flavin-bind 28.8 93 0.002 32.4 5.1 32 87-121 2-33 (531)
428 PRK12824 acetoacetyl-CoA reduc 28.8 1E+02 0.0022 26.9 4.7 30 87-119 3-33 (245)
429 TIGR03570 NeuD_NnaD sugar O-ac 28.6 1E+02 0.0022 26.2 4.5 30 88-120 1-30 (201)
430 PRK09135 pteridine reductase; 28.5 1E+02 0.0022 26.8 4.7 30 87-119 7-37 (249)
431 TIGR00715 precor6x_red precorr 28.5 64 0.0014 30.5 3.5 73 87-187 1-76 (256)
432 PRK06847 hypothetical protein; 28.5 96 0.0021 29.4 4.8 32 86-120 4-35 (375)
433 PRK07577 short chain dehydroge 28.2 97 0.0021 26.9 4.4 31 87-120 4-35 (234)
434 COG0677 WecC UDP-N-acetyl-D-ma 28.2 64 0.0014 33.1 3.6 31 85-118 8-38 (436)
435 PRK06947 glucose-1-dehydrogena 28.1 97 0.0021 27.3 4.5 31 85-118 1-32 (248)
436 PRK11150 rfaD ADP-L-glycero-D- 28.1 86 0.0019 28.9 4.3 29 89-120 2-31 (308)
437 PRK09987 dTDP-4-dehydrorhamnos 28.0 83 0.0018 29.3 4.2 22 87-108 1-23 (299)
438 PRK11728 hydroxyglutarate oxid 28.0 91 0.002 30.2 4.6 34 86-120 2-35 (393)
439 PRK12825 fabG 3-ketoacyl-(acyl 28.0 1E+02 0.0022 26.6 4.5 23 87-109 7-30 (249)
440 PF01494 FAD_binding_3: FAD bi 27.9 1.1E+02 0.0023 28.0 4.8 31 87-120 2-32 (356)
441 PRK14852 hypothetical protein; 27.8 76 0.0016 35.9 4.4 97 86-189 332-435 (989)
442 KOG3923 D-aspartate oxidase [A 27.8 98 0.0021 30.8 4.7 36 85-120 2-41 (342)
443 PRK12384 sorbitol-6-phosphate 27.7 1.1E+02 0.0024 27.1 4.8 31 87-120 3-34 (259)
444 PRK06753 hypothetical protein; 27.7 98 0.0021 29.3 4.7 30 87-119 1-30 (373)
445 PRK12829 short chain dehydroge 27.5 1E+02 0.0022 27.3 4.5 31 87-120 12-43 (264)
446 PRK06019 phosphoribosylaminoim 27.4 1E+02 0.0022 30.1 4.8 31 87-120 3-33 (372)
447 PRK07588 hypothetical protein; 27.3 95 0.0021 29.8 4.6 30 87-119 1-30 (391)
448 cd08285 NADP_ADH NADP(H)-depen 27.2 2.3E+02 0.0049 26.6 7.0 23 86-108 167-189 (351)
449 PRK08223 hypothetical protein; 27.2 46 0.00099 32.2 2.3 97 86-187 27-128 (287)
450 PRK11259 solA N-methyltryptoph 27.1 1E+02 0.0023 29.1 4.8 33 85-120 2-34 (376)
451 PRK08244 hypothetical protein; 27.0 93 0.002 31.2 4.6 32 86-120 2-33 (493)
452 PRK07774 short chain dehydroge 26.8 1.2E+02 0.0026 26.7 4.8 31 87-120 7-38 (250)
453 KOG0024 Sorbitol dehydrogenase 26.8 66 0.0014 32.2 3.4 34 176-210 242-275 (354)
454 cd01337 MDH_glyoxysomal_mitoch 26.8 68 0.0015 31.2 3.4 22 87-108 1-23 (310)
455 PF07991 IlvN: Acetohydroxy ac 26.7 1.1E+02 0.0023 27.6 4.4 31 87-120 5-35 (165)
456 TIGR01082 murC UDP-N-acetylmur 26.6 2.9E+02 0.0063 27.5 8.0 30 88-121 1-31 (448)
457 PRK07024 short chain dehydroge 26.6 1.2E+02 0.0026 27.1 4.8 30 87-119 3-33 (257)
458 COG0644 FixC Dehydrogenases (f 26.6 1E+02 0.0023 30.1 4.8 33 85-120 2-34 (396)
459 PRK08177 short chain dehydroge 26.5 1.1E+02 0.0024 26.7 4.5 30 88-120 3-33 (225)
460 PRK06153 hypothetical protein; 26.2 42 0.00091 34.0 1.9 51 54-108 148-198 (393)
461 COG0654 UbiH 2-polyprenyl-6-me 26.2 99 0.0021 30.0 4.5 32 86-120 2-33 (387)
462 TIGR01772 MDH_euk_gproteo mala 26.2 1.3E+02 0.0028 29.2 5.3 21 88-108 1-22 (312)
463 cd01078 NAD_bind_H4MPT_DH NADP 26.2 1.2E+02 0.0027 26.3 4.8 31 87-120 29-60 (194)
464 COG0665 DadA Glycine/D-amino a 26.1 1.2E+02 0.0026 28.7 4.9 33 85-120 3-35 (387)
465 PLN02989 cinnamyl-alcohol dehy 26.0 1.2E+02 0.0025 28.2 4.8 29 87-118 6-35 (325)
466 PRK12409 D-amino acid dehydrog 26.0 1.1E+02 0.0024 29.6 4.7 31 87-120 2-32 (410)
467 PRK08773 2-octaprenyl-3-methyl 25.9 1.1E+02 0.0024 29.4 4.8 33 85-120 5-37 (392)
468 PRK12828 short chain dehydroge 25.9 1.1E+02 0.0025 26.3 4.4 31 87-120 8-39 (239)
469 PRK05884 short chain dehydroge 25.9 1.1E+02 0.0023 27.1 4.4 31 239-269 141-171 (223)
470 cd08232 idonate-5-DH L-idonate 25.8 3.5E+02 0.0075 25.0 7.9 30 87-119 167-197 (339)
471 PRK10083 putative oxidoreducta 25.5 1.7E+02 0.0037 27.1 5.8 20 87-106 162-181 (339)
472 PRK08132 FAD-dependent oxidore 25.5 1.1E+02 0.0023 31.3 4.8 32 85-119 22-53 (547)
473 PRK07074 short chain dehydroge 25.4 1.2E+02 0.0026 26.8 4.7 29 88-119 4-33 (257)
474 PRK08267 short chain dehydroge 25.4 1.2E+02 0.0026 27.0 4.6 29 88-119 3-32 (260)
475 PRK05993 short chain dehydroge 25.4 1.2E+02 0.0026 27.6 4.7 31 87-120 5-36 (277)
476 PF01266 DAO: FAD dependent ox 25.4 1.3E+02 0.0029 27.3 5.0 31 88-121 1-31 (358)
477 COG1179 Dinucleotide-utilizing 25.4 63 0.0014 31.1 2.8 103 87-195 31-140 (263)
478 PRK07523 gluconate 5-dehydroge 25.3 1.3E+02 0.0028 26.8 4.7 30 87-119 11-41 (255)
479 PF12338 RbcS: Ribulose-1,5-bi 25.2 38 0.00082 24.3 1.0 20 35-54 22-41 (45)
480 PLN02653 GDP-mannose 4,6-dehyd 24.9 1E+02 0.0022 28.9 4.3 30 87-119 7-37 (340)
481 PLN02702 L-idonate 5-dehydroge 24.9 1.2E+02 0.0025 28.9 4.6 27 176-202 254-280 (364)
482 PRK08020 ubiF 2-octaprenyl-3-m 24.9 1.2E+02 0.0025 29.1 4.7 33 85-120 4-36 (391)
483 PRK09009 C factor cell-cell si 24.8 74 0.0016 27.8 3.1 22 87-108 1-23 (235)
484 PRK07102 short chain dehydroge 24.8 1.2E+02 0.0027 26.6 4.5 30 87-119 2-32 (243)
485 COG1893 ApbA Ketopantoate redu 24.7 1E+02 0.0022 29.8 4.2 22 87-108 1-22 (307)
486 TIGR02622 CDP_4_6_dhtase CDP-g 24.4 1.3E+02 0.0027 28.6 4.8 30 87-119 5-35 (349)
487 cd08246 crotonyl_coA_red croto 24.3 5E+02 0.011 24.9 8.9 30 87-119 195-225 (393)
488 PRK09126 hypothetical protein; 24.1 1.2E+02 0.0026 29.0 4.6 33 85-120 2-34 (392)
489 cd08292 ETR_like_2 2-enoyl thi 24.1 2.1E+02 0.0045 26.1 6.0 32 87-121 141-173 (324)
490 PRK08125 bifunctional UDP-gluc 24.1 1.1E+02 0.0024 32.3 4.7 33 86-120 315-348 (660)
491 PRK06126 hypothetical protein; 24.0 1.2E+02 0.0026 30.9 4.8 33 85-120 6-38 (545)
492 COG1249 Lpd Pyruvate/2-oxoglut 24.0 2.3E+02 0.005 29.1 6.8 36 84-120 171-206 (454)
493 PLN02520 bifunctional 3-dehydr 23.9 2.2E+02 0.0049 29.6 6.8 31 87-120 380-410 (529)
494 PF00106 adh_short: short chai 23.9 1.7E+02 0.0036 23.9 4.9 31 88-120 2-33 (167)
495 PLN02172 flavin-containing mon 23.8 2.1E+02 0.0047 29.0 6.6 81 87-185 205-285 (461)
496 PLN02986 cinnamyl-alcohol dehy 23.7 1.5E+02 0.0033 27.5 5.1 29 87-118 6-35 (322)
497 cd08249 enoyl_reductase_like e 23.7 3.5E+02 0.0076 25.3 7.6 96 87-207 156-254 (339)
498 cd08293 PTGR2 Prostaglandin re 23.6 1.3E+02 0.0027 28.1 4.6 31 87-120 156-188 (345)
499 cd08261 Zn_ADH7 Alcohol dehydr 23.6 4.5E+02 0.0098 24.3 8.3 31 87-120 161-191 (337)
500 COG1635 THI4 Ribulose 1,5-bisp 23.6 1.3E+02 0.0029 28.8 4.6 31 87-120 31-61 (262)
No 1
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=8e-84 Score=634.57 Aligned_cols=282 Identities=83% Similarity=1.229 Sum_probs=260.5
Q ss_pred cccCCCCCCCCcccccCCCCCCCCCCcccccccccccccCcccccccccccccCCCCHHHHHHHhhccccccCCCCcccc
Q 022023 3 SHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKE 82 (304)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (304)
+|||||++|||+++|++|+++ .+|.+|++|+|||++++++|.....+.+|.+.++.++..+... ....+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 71 (442)
T PLN02237 1 THAALASSRIPATTRLPSKAS--------HKRLEVAEFSGLRASSCVTFAKNAREASFFDVVASQLAPKVAG-STPVRGE 71 (442)
T ss_pred CcchhcccCCccccccccccc--------cccccccccccccccccccccccccchhHHHHhhhhhhhhhcc-ccccccc
Confidence 699999999999999999886 3677899999999999999987777889999999998775333 5566678
Q ss_pred ccCcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEE
Q 022023 83 TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (304)
Q Consensus 83 ~~~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~ 162 (304)
++|++||||||||||||+++|+|+++.+++++||+|||+.++++++|||||||+||+|+++|++.+++.|.+||+.|+|+
T Consensus 72 ~~~~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~ 151 (442)
T PLN02237 72 TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVV 151 (442)
T ss_pred ccceEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEE
Confidence 88999999999999999999998875335699999999999999999999999999999999864678999999999999
Q ss_pred ecCCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcccCCCCCCceEecCCchh
Q 022023 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTT 242 (304)
Q Consensus 163 ~~~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~~~~~~~~~IISnaSCTT 242 (304)
++++|.++||+++|+||||||||.|+++++++.|+++|||||+||+|++++|+|+||||||++.|++..++|||||||||
T Consensus 152 ~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTT 231 (442)
T PLN02237 152 SNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTT 231 (442)
T ss_pred EcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHH
Confidence 99999999999999999999999999999999999999999999999988778999999999999863368999999999
Q ss_pred hhhhhHHHHHHhhcCceEEEEEEEeeccCccccccCCCCCCcccccccchhhh
Q 022023 243 NCLAPFVKVMDEELGIVKGAMTTTHSYTGDQVIRHTKMSTSLLERAPKIKLLL 295 (304)
Q Consensus 243 n~LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ~l~D~~~~h~d~RraRa~~~~~ 295 (304)
|||+|++|+|||+|||++|.|||||+||+||+++|+ +|+||||||||++.|
T Consensus 232 NcLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~--~h~D~Rr~Raaa~nI 282 (442)
T PLN02237 232 NCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDA--SHRDLRRARAAALNI 282 (442)
T ss_pred HHHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccC--CCccccccccccccc
Confidence 999999999999999999999999999999999999 899999999999877
No 2
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-73 Score=549.89 Aligned_cols=208 Identities=42% Similarity=0.675 Sum_probs=193.7
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCC--CCCceEEEEeCC-CCccchhhccccccccccCCceEEEe-------cCCeEEE
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRK--DSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIV-------DNETISV 154 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~--~~~l~iVaInd~-~~~~~~ayLLkyDS~hG~f~g~v~~~-------~~~~L~i 154 (304)
|++||||||||||||+++|+++++. ..++++|+|||+ .++++++|||||||+||+|+++|+++ +++.|++
T Consensus 2 m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~i 81 (361)
T PTZ00434 2 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVV 81 (361)
T ss_pred CceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEE
Confidence 5689999999999999999988752 246999999995 89999999999999999999999872 5788999
Q ss_pred CCEEEEEE-ecCCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcccCCCCCCc
Q 022023 155 DGKLIKVV-SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVAN 233 (304)
Q Consensus 155 nGk~I~V~-~~~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~~~~~~~~~ 233 (304)
||++|+++ +++||+++||+++|+||||||||.|++++.++.||++||||||||||+++ +.|+|||||||+.|++..++
T Consensus 82 ng~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d-~~~t~V~GVN~~~y~~~~~~ 160 (361)
T PTZ00434 82 NGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASG-GAKTIVMGVNQHEYSPTEHH 160 (361)
T ss_pred CCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCC-CCceEEEcCChHHcCcccCc
Confidence 99999996 99999999999999999999999999999999999999999999999876 45899999999999872278
Q ss_pred eEecCCchhhhhhhHHHHH-HhhcCceEEEEEEEeeccCccccccCCCC-CCcccccccchhhh
Q 022023 234 IVSNASCTTNCLAPFVKVM-DEELGIVKGAMTTTHSYTGDQVIRHTKMS-TSLLERAPKIKLLL 295 (304)
Q Consensus 234 IISnaSCTTn~LaPvLKvL-~d~fGI~~g~vTTvHa~T~dQ~l~D~~~~-h~d~RraRa~~~~~ 295 (304)
||||||||||||+|++|+| ||+|||++|+|||+|+||+||+++|+ + ||||||+|||++.|
T Consensus 161 IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~--~~~kD~Rr~Raaa~nI 222 (361)
T PTZ00434 161 VVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDG--VSVKDWRGGRAAAVNI 222 (361)
T ss_pred EEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccC--cCcccccccccccccC
Confidence 9999999999999999999 79999999999999999999999999 6 69999999999987
No 3
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=2.3e-72 Score=548.67 Aligned_cols=254 Identities=65% Similarity=1.037 Sum_probs=230.9
Q ss_pred cccccccCcccccccccccccCCCCHHHHHHHhhccccccCCCCccccccCcceEEEEcCCHHHHHHHHHHHhCCCCCce
Q 022023 35 LDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLD 114 (304)
Q Consensus 35 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikVaInGfGrIGR~vlR~l~~r~~~~l~ 114 (304)
.+|++|+|||++++.+|+......++ +..++..+ ..........++|++||||||||||||.++|+|+++.++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~kVaInGfGrIGR~vlr~l~~~~~~~~e 88 (395)
T PLN03096 13 KGFSEFSGLKSSSAVTFGKRSDSLDF---VVFATSAV-SSSGGARRAVTEAKIKVAINGFGRIGRNFLRCWHGRKDSPLD 88 (395)
T ss_pred CcccccccccccCcccccccccchhh---hhhhhhhh-hccccccccccccccEEEEECcCHHHHHHHHHHHhCCCCCeE
Confidence 49999999999888888655545554 77776554 232445566778999999999999999999999987656789
Q ss_pred EEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCCCCCCCCcccCccEEEcCCCCCCChhhHH
Q 022023 115 VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAG 194 (304)
Q Consensus 115 iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~dP~~idw~~~giDiVve~TG~f~~~e~a~ 194 (304)
+++|||+.++++++|||+|||+||+|+++|+..+++.|.+||+.|+|++++||+++||.++|+||||||||.|+++++++
T Consensus 89 vvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~ 168 (395)
T PLN03096 89 VVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDRNPLNLPWGELGIDLVIEGTGVFVDREGAG 168 (395)
T ss_pred EEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcCCcccccccccCCCEEEECcchhhhHHHHH
Confidence 99999999999999999999999999999986567899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEeCCCCCCCCCeEEeccCcccCCCCCCceEecCCchhhhhhhHHHHHHhhcCceEEEEEEEeeccCccc
Q 022023 195 KHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQV 274 (304)
Q Consensus 195 ~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~~~~~~~~~IISnaSCTTn~LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ~ 274 (304)
+|+++|||||+||+|.++ |+|+||||||++.|++. ++||||||||||||+|++|+|||+|||+++.|||||+||++|+
T Consensus 169 ~hl~aGAkkV~iSap~~~-~~ptvV~GVN~~~l~~~-~~IISnaSCTTn~LAp~lkvL~~~fGI~~g~mTTiHa~T~~Q~ 246 (395)
T PLN03096 169 KHIQAGAKKVLITAPGKG-DIPTYVVGVNADDYKHS-DPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQR 246 (395)
T ss_pred HHHHCCCEEEEeCCCCCC-CCCeEeCccCHHHhccC-CCEEECCchHHHHHHHHHHHHHHhcCeeEEEEEEEEccccccc
Confidence 999999999999999765 78999999999999876 7899999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcccccccchhhhh
Q 022023 275 IRHTKMSTSLLERAPKIKLLLT 296 (304)
Q Consensus 275 l~D~~~~h~d~RraRa~~~~~~ 296 (304)
++|+ +|+|+||+|++++.|-
T Consensus 247 llD~--~~~d~rr~Raaa~NiI 266 (395)
T PLN03096 247 LLDA--SHRDLRRARAAALNIV 266 (395)
T ss_pred cccC--CCCccccchhhhcccc
Confidence 9999 8999999999998874
No 4
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-70 Score=543.56 Aligned_cols=237 Identities=32% Similarity=0.544 Sum_probs=217.6
Q ss_pred cccccccCCCCHHHHHHHhhccccccCCCCccccccCcceEEEEcCCHHHHHHHHHHHhCC--CCCceEEEEe----CCC
Q 022023 49 ATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRK--DSPLDVVVVN----DSG 122 (304)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikVaInGfGrIGR~vlR~l~~r~--~~~l~iVaIn----d~~ 122 (304)
+.|..++++.++++||+++|++.+++... .++.||||||||||||+++|+++++. +.++++|+|| |..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~ 169 (477)
T PRK08289 96 VKYKAEGDGSDVEAFVAEELADAVGGADD------IEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEG 169 (477)
T ss_pred HHHhhccCCCcHHHHHHHHHhhhhcCCCC------CCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCC
Confidence 45655577889999999999998665431 25789999999999999999999863 2469999995 567
Q ss_pred CccchhhccccccccccCCceEEEe-cCCeEEECCEEEEEEecCCCCCCCCcccCcc--EEEcCCCCCCChhhHHHHHH-
Q 022023 123 GVKNASHLLKYDSLLGTFKADVKIV-DNETISVDGKLIKVVSNRDPLQLPWAELGID--IVIEGTGVFVDGPGAGKHIQ- 198 (304)
Q Consensus 123 ~~~~~ayLLkyDS~hG~f~g~v~~~-~~~~L~inGk~I~V~~~~dP~~idw~~~giD--iVve~TG~f~~~e~a~~Hl~- 198 (304)
++++++|||+|||+||+|+++|+++ +++.|++||+.|+++++++|+++||+++|+| +||||||.|++++++++||+
T Consensus 170 d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liing~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~ 249 (477)
T PRK08289 170 DLEKRASLLRRDSVHGPFNGTITVDEENNAIIANGNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKS 249 (477)
T ss_pred CHHHHHHHhhhhcCCCCCCCceEeecCCCEEEECCEEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhc
Confidence 9999999999999999999999986 3789999999999999999999999999999 99999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCCCeEEeccCcccCCCCCCceEecCCchhhhhhhHHHHHHhhcCceEEEEEEEeeccCccccccC
Q 022023 199 AGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQVIRHT 278 (304)
Q Consensus 199 aGakkVIISAp~k~~DiP~vV~GVN~~~~~~~~~~IISnaSCTTn~LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ~l~D~ 278 (304)
+||||||||||+++ |+|+||||||++.|++. ++||||||||||||+|++|+|||+|||++|+|||||+||++|+++|+
T Consensus 250 ~GakkViiSAP~k~-d~p~iV~GVN~~~~~~~-~~IISnASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~ 327 (477)
T PRK08289 250 KGVAKVLLTAPGKG-DIKNIVHGVNHSDITDE-DKIVSAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDN 327 (477)
T ss_pred cCCCEEEECCCCCC-CCCeEEcccCHHHhCCC-CCEEECCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhh
Confidence 79999999999987 78999999999999876 78999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccchhhh
Q 022023 279 KMSTSLLERAPKIKLLL 295 (304)
Q Consensus 279 ~~~h~d~RraRa~~~~~ 295 (304)
+|+|+||+|++++-|
T Consensus 328 --~hkd~RrgRaaa~NI 342 (477)
T PRK08289 328 --YHKGDRRGRSAPLNM 342 (477)
T ss_pred --hhhcCcccceeeeee
Confidence 999999999998765
No 5
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=9e-69 Score=514.97 Aligned_cols=206 Identities=62% Similarity=1.039 Sum_probs=195.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
+||||||||||||+++|+++++.++++++|+|||+.++++++|||||||+||+|+++|++ +++.|.+||+.|++++++|
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~-~~~~l~v~g~~I~v~~~~d 80 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISA-DENSITVNGKTIKCVSDRN 80 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEE-cCCEEEECCEEEEEEEcCC
Confidence 699999999999999999887633469999999998999999999999999999999997 5789999999999999999
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcccCCCCCCceEecCCchhhhhh
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLA 246 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~~~~~~~~~IISnaSCTTn~La 246 (304)
|+++||.++|+||||||||.|+++++++.|+++|||||++|+|++++|+|+||||||++.|++.+++||||||||||||+
T Consensus 81 p~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~La 160 (337)
T PRK07403 81 PLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNCLA 160 (337)
T ss_pred cccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999887889999999999998533689999999999999
Q ss_pred hHHHHHHhhcCceEEEEEEEeeccCccccccCCCCCCcccccccchhhh
Q 022023 247 PFVKVMDEELGIVKGAMTTTHSYTGDQVIRHTKMSTSLLERAPKIKLLL 295 (304)
Q Consensus 247 PvLKvL~d~fGI~~g~vTTvHa~T~dQ~l~D~~~~h~d~RraRa~~~~~ 295 (304)
|++|+||++|||++++|||||+||+||+++|+ +|+||||+|++++.|
T Consensus 161 p~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~--~~~d~r~~raaa~Ni 207 (337)
T PRK07403 161 PIAKVLHDNFGIIKGTMTTTHSYTGDQRILDA--SHRDLRRARAAAVNI 207 (337)
T ss_pred HHHHHHHHhcCeeEEEEEEEeeecCCcccccc--ccccccccccccccc
Confidence 99999999999999999999999999999999 899999999999877
No 6
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-68 Score=509.07 Aligned_cols=204 Identities=50% Similarity=0.797 Sum_probs=195.1
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
++||||||||||||+++|++.++.. ++++|+|||+.+++++||||+|||+||+|.++++. +++.+.|||+.|+++.++
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~-dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~-~~~~~~v~g~~I~v~~~~ 78 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDG-DIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEV-KDDALVVNGKGIKVLAER 78 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCCC-CeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccc-cCCeEEECCceEEEEecC
Confidence 3799999999999999999999842 69999999988999999999999999999999985 678899999999999999
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHc-CCCEEEEeCCCCCCCCCeEEeccCcccCCCCCCceEecCCchhhh
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA-GAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNC 244 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~a-GakkVIISAp~k~~DiP~vV~GVN~~~~~~~~~~IISnaSCTTn~ 244 (304)
+|+++||.++|+|+||||||.|+++|.+++|+++ |||||++|+|+++ |+|+||||||++.|++. +.||||+||||||
T Consensus 79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~-~~~~vv~gvn~~~~~~~-~~iVsnaSCTTNc 156 (335)
T COG0057 79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKD-DVATVVYGVNHNYYDAG-HTIVSNASCTTNC 156 (335)
T ss_pred ChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCC-CccEEEEeccccccCCC-CcEEEEccchhhh
Confidence 9999999999999999999999999999999998 6999999999986 58999999999999985 8999999999999
Q ss_pred hhhHHHHHHhhcCceEEEEEEEeeccCccccccCCCCCCcccccccchhhh
Q 022023 245 LAPFVKVMDEELGIVKGAMTTTHSYTGDQVIRHTKMSTSLLERAPKIKLLL 295 (304)
Q Consensus 245 LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ~l~D~~~~h~d~RraRa~~~~~ 295 (304)
|+|++|+|+|+|||++|.|||+|+||+||+++|+ +|+||||+||+++.|
T Consensus 157 Lap~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dg--ph~~~rr~raa~~ni 205 (335)
T COG0057 157 LAPVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDG--PHKDLRRARAAALNI 205 (335)
T ss_pred hHHHHHHHHHhcCeeEEEEEEEEcccCCCccccC--cccchhhhccccCCC
Confidence 9999999999999999999999999999999999 999999999999875
No 7
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=1.2e-66 Score=499.28 Aligned_cols=204 Identities=43% Similarity=0.700 Sum_probs=192.3
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEec
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (304)
|++||||||||||||+++|+++++ +++++|+|||..++++++|||||||+||+|+++|++ +++.|.+||+.|+|+++
T Consensus 1 m~~~i~inGfGRIGr~~~r~~~~~--~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~-~~~~l~v~g~~I~v~~~ 77 (331)
T PRK15425 1 MTIKVGINGFGRIGRIVFRAAQKR--SDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAE 77 (331)
T ss_pred CceEEEEEeeChHHHHHHHHHHHC--CCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEe-cCCEEEECCeEEEEEEc
Confidence 347999999999999999998875 469999999999999999999999999999999997 57889999999999999
Q ss_pred CCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcccCCCCCCceEecCCchhhh
Q 022023 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNC 244 (304)
Q Consensus 165 ~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~~~~~~~~~IISnaSCTTn~ 244 (304)
++|+++||.++|+||||||||.|++++++++|+++|||||++|+|.++ ++|+||||||++.|++ ++|||||||||||
T Consensus 78 ~dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~-~vp~vV~gVN~~~~~~--~~IISnaSCtTn~ 154 (331)
T PRK15425 78 RDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKD-NTPMFVKGANFDKYAG--QDIVSNASCTTNC 154 (331)
T ss_pred CChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCC-CCCEEEcccCHHHcCC--CCEEECCCcHHHH
Confidence 999999999999999999999999999999999999999999999654 7899999999999974 6899999999999
Q ss_pred hhhHHHHHHhhcCceEEEEEEEeeccCccccccCCCCCCcccccccchhhh
Q 022023 245 LAPFVKVMDEELGIVKGAMTTTHSYTGDQVIRHTKMSTSLLERAPKIKLLL 295 (304)
Q Consensus 245 LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ~l~D~~~~h~d~RraRa~~~~~ 295 (304)
|+|++|+|||+|||+++.|||||+||++|+++|+ ++|+|+||+|++++-|
T Consensus 155 Lapvlk~L~~~fgI~~g~mTTvha~T~~q~llD~-~~~~d~r~~R~aa~Ni 204 (331)
T PRK15425 155 LAPLAKVINDNFGIIEGLMTTVHATTATQKTVDG-PSHKDWRGGRGASQNI 204 (331)
T ss_pred HHHHHHHHHHhCCeEEEEEEEEEeccCccccccC-CCCcccccCcchhhce
Confidence 9999999999999999999999999999999998 2469999999999876
No 8
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-66 Score=499.98 Aligned_cols=207 Identities=41% Similarity=0.685 Sum_probs=193.6
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC-CCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEe
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~-~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (304)
|.+||||||||||||+++|+++++ +++++|+|||+ .++++++|||||||+||+|+++|++ +++.|++||+.|++++
T Consensus 1 m~~ki~INGfGRIGr~v~r~~~~~--~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~-~~~~l~i~g~~i~~~~ 77 (337)
T PTZ00023 1 MVVKLGINGFGRIGRLVFRAALER--EDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSV-TDGFLMIGSKKVHVFF 77 (337)
T ss_pred CceEEEEECcChHHHHHHHHHHhc--CCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEe-cCCEEEECCeEEEEEe
Confidence 457999999999999999999875 46999999995 7999999999999999999999998 5788999999999999
Q ss_pred cCCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcccCCCCCCceEecCCchhh
Q 022023 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTN 243 (304)
Q Consensus 164 ~~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~~~~~~~~~IISnaSCTTn 243 (304)
++||+++||++.|+||||||||.|+++++++.|+++|||||++|+|.++ |+|+||||||++.|++. ++||||||||||
T Consensus 78 ~~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~-~vp~vV~gVN~~~~~~~-~~IISnasCTTn 155 (337)
T PTZ00023 78 EKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKD-DTPIYVMGVNHTQYDKS-QRIVSNASCTTN 155 (337)
T ss_pred CCChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCC-CCCeEEcccCHHHhCCC-CCEEECCccHHH
Confidence 9999999999999999999999999999999999999999999999764 78999999999999876 789999999999
Q ss_pred hhhhHHHHHHhhcCceEEEEEEEeeccCccccccCCCC-CCcccccccchhhhh
Q 022023 244 CLAPFVKVMDEELGIVKGAMTTTHSYTGDQVIRHTKMS-TSLLERAPKIKLLLT 296 (304)
Q Consensus 244 ~LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ~l~D~~~~-h~d~RraRa~~~~~~ 296 (304)
||+|++|+||++|||+++.|||||+||++|+++|+++. |+||||+|++++-|-
T Consensus 156 ~Lap~lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiI 209 (337)
T PTZ00023 156 CLAPLAKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNII 209 (337)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccceeecccc
Confidence 99999999999999999999999999999999998221 689999999998763
No 9
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.2e-66 Score=501.04 Aligned_cols=205 Identities=50% Similarity=0.754 Sum_probs=193.1
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEec
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (304)
|++||||||||||||+++|+++++ +++++|+|||+.++++++|||||||+||+|+++|++ +++.|.+||+.|+++++
T Consensus 1 m~~ki~INGfGRIGR~~~r~~~~~--~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~-~~~~l~v~g~~I~v~~~ 77 (343)
T PRK07729 1 MKTKVAINGFGRIGRMVFRKAIKE--SAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEA-FEDHLLVDGKKIRLLNN 77 (343)
T ss_pred CceEEEEECcChHHHHHHHHHhhc--CCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEe-cCCEEEECCEEEEEEEc
Confidence 568999999999999999999875 469999999999999999999999999999999997 57899999999999999
Q ss_pred CCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcccCCCCCCceEecCCchhhh
Q 022023 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNC 244 (304)
Q Consensus 165 ~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~~~~~~~~~IISnaSCTTn~ 244 (304)
+||+++||++.|+||||||||.|+++++++.|+++|||||++|+|++++|+| +|+|||++.|++..++|||||||||||
T Consensus 78 ~dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~-lV~gVN~~~~~~~~~~IISnaSCTTn~ 156 (343)
T PRK07729 78 RDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVT-IVVGVNEDQLDIEKHTIISNASCTTNC 156 (343)
T ss_pred CChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCc-EEecccHHHhccCCCCEEECCchHHHH
Confidence 9999999999999999999999999999999999999999999998876654 588999999987226899999999999
Q ss_pred hhhHHHHHHhhcCceEEEEEEEeeccCccccccCCCCCCcccccccchhhh
Q 022023 245 LAPFVKVMDEELGIVKGAMTTTHSYTGDQVIRHTKMSTSLLERAPKIKLLL 295 (304)
Q Consensus 245 LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ~l~D~~~~h~d~RraRa~~~~~ 295 (304)
|+|++|+||++|||+++.|||||+||+||+++|+ +|+||||+|++++.|
T Consensus 157 Lap~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~--~~~d~rr~R~a~~ni 205 (343)
T PRK07729 157 LAPVVKVLDEQFGIENGLMTTVHAYTNDQKNIDN--PHKDLRRARACGQSI 205 (343)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEecccCccccccc--chhhhhcccccccce
Confidence 9999999999999999999999999999999999 899999999998876
No 10
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=7e-65 Score=486.72 Aligned_cols=203 Identities=52% Similarity=0.803 Sum_probs=192.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCC-eEEECCE-EEEEEecC
Q 022023 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNE-TISVDGK-LIKVVSNR 165 (304)
Q Consensus 88 kVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~-~L~inGk-~I~V~~~~ 165 (304)
||||||||||||+++|+++++.+.++++|+|||+.++++++|||||||+||+|+++|+++ ++ .|.+||+ .|.|++++
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~-~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTAD-EDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEec-CCceEEECCeEEEEEEecC
Confidence 699999999999999999886324699999999999999999999999999999999984 66 7999999 99999999
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcccCCCCCCceEecCCchhhhh
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~~~~~~~~~IISnaSCTTn~L 245 (304)
+|+++||.++|+||||||||.|+++++++.|+++|||||++|+|++++ +||||||||++.|++. ++||||||||||||
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~-~plvV~gVN~~~~~~~-~~IISn~sCtTn~L 157 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGD-APTIVYGVNHDEYDPE-ERIISNASCTTNCL 157 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCC-CCeecCCCCHHHhCCC-CCEEecCCchHHHH
Confidence 999999999999999999999999999999999999999999998874 8999999999999876 78999999999999
Q ss_pred hhHHHHHHhhcCceEEEEEEEeeccCccccccCCCCCCcccccccchhhh
Q 022023 246 APFVKVMDEELGIVKGAMTTTHSYTGDQVIRHTKMSTSLLERAPKIKLLL 295 (304)
Q Consensus 246 aPvLKvL~d~fGI~~g~vTTvHa~T~dQ~l~D~~~~h~d~RraRa~~~~~ 295 (304)
+|+||+||++|||+++.|||||++|++|+++|+ +|+|+||+|++++-|
T Consensus 158 ap~lk~L~~~fgI~~~~~TTiha~t~~q~lld~--~~~d~r~~r~~a~Ni 205 (327)
T TIGR01534 158 APLAKVLDEAFGIVSGLMTTVHSYTNDQNLVDG--PHKDLRRARAAALNI 205 (327)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEeecCccccccC--CCCCCcCceEeEeee
Confidence 999999999999999999999999999999999 899999999988765
No 11
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=5.3e-64 Score=492.74 Aligned_cols=203 Identities=47% Similarity=0.755 Sum_probs=191.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC-CCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~-~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
+||||||||||||+++|++.++ .++++|+|||+ .+.++++|||||||+||+|+++|++.+++.|.+||+.|+|++++
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~--~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSR--DDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR 163 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhc--CCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence 7999999999999999998864 35999999995 79999999999999999999999864578999999999999999
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcccCCCCCCceEecCCchhhhh
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~~~~~~~~~IISnaSCTTn~L 245 (304)
+|++++|.++|+||||||||.|+++++++.|+++|||||||++|.+ |+|+||||||++.|++. ++||||||||||||
T Consensus 164 dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~--dvPlvV~gVN~~~l~~~-~~IISnaSCTTn~L 240 (421)
T PLN02272 164 DPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSA--DAPMFVVGVNEKTYKPN-MNIVSNASCTTNCL 240 (421)
T ss_pred CcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCC--CCCeEEeccCHHHhCCC-CCeeeCCCcHHHHH
Confidence 9999999999999999999999999999999999999999999964 68999999999999886 78999999999999
Q ss_pred hhHHHHHHhhcCceEEEEEEEeeccCccccccCCCCCCcccccccchhhh
Q 022023 246 APFVKVMDEELGIVKGAMTTTHSYTGDQVIRHTKMSTSLLERAPKIKLLL 295 (304)
Q Consensus 246 aPvLKvL~d~fGI~~g~vTTvHa~T~dQ~l~D~~~~h~d~RraRa~~~~~ 295 (304)
+|++|+||++|||+++.|||||+||+||+++|+ +.|+||||+|++++-|
T Consensus 241 ap~lk~L~~~fGI~~g~mTTvha~T~tQ~llD~-~~~~d~r~~R~aa~NI 289 (421)
T PLN02272 241 APLAKVVHEEFGILEGLMTTVHATTATQKTVDG-PSMKDWRGGRGASQNI 289 (421)
T ss_pred HHHHHHHHHhCCeEEEEEEEEEeccCccccccC-ccccccccCCCccccc
Confidence 999999999999999999999999999999998 2479999999999876
No 12
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=9.4e-64 Score=480.95 Aligned_cols=204 Identities=23% Similarity=0.391 Sum_probs=189.5
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC-CCccchhhccccccccccCC-ceEEEecCCeEEECC-EEEEE
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFK-ADVKIVDNETISVDG-KLIKV 161 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~-~~~~~~ayLLkyDS~hG~f~-g~v~~~~~~~L~inG-k~I~V 161 (304)
|++||||||||||||+++|+++++ +++++|+|||+ .++++++|||||||+||+|+ ++|++ +++.|.+|| ++|++
T Consensus 1 m~~kv~INGfGRIGR~v~R~~~~~--~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~-~~~~l~i~g~~~i~~ 77 (342)
T PTZ00353 1 LPITVGINGFGPVGKAVLFASLTD--PLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRV-VGEQIVLNGTQKIRV 77 (342)
T ss_pred CCeEEEEECCChHHHHHHHHHHhc--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEE-cCCEEecCCCeEEEE
Confidence 457999999999999999999875 46999999995 79999999999999999996 68987 578899999 89999
Q ss_pred EecCCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcccCCCCCCceEecCCch
Q 022023 162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCT 241 (304)
Q Consensus 162 ~~~~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~~~~~~~~~IISnaSCT 241 (304)
+++++|+++||+++|+||||||||.|++.+.+..|+++|+|||||++|++ |+||||||||++.|++. ++||||||||
T Consensus 78 ~~~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~--d~p~vV~gVN~~~~~~~-~~IISnaSCT 154 (342)
T PTZ00353 78 SAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSA--DAPTVMAGSNDERLSAS-LPVCCAGAPI 154 (342)
T ss_pred EecCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCC--CCCeEEecCChHHcCCC-CCEEECCCHH
Confidence 99999999999999999999999999999999999999999999999985 57999999999999986 7899999999
Q ss_pred hhhhhhHHHHHHhhcCceEEEEEEEeeccCccccccCCCC-CCcccccccchhhh
Q 022023 242 TNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQVIRHTKMS-TSLLERAPKIKLLL 295 (304)
Q Consensus 242 Tn~LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ~l~D~~~~-h~d~RraRa~~~~~ 295 (304)
||||+|++|+|||+|||+++.|||||+|+ +|...|.++. |+||||+|+|++.|
T Consensus 155 Tn~LapvlkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nI 208 (342)
T PTZ00353 155 AVALAPVIRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAI 208 (342)
T ss_pred HHHHHHHHHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCC
Confidence 99999999999999999999999999997 7888887212 69999999999886
No 13
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-63 Score=478.89 Aligned_cols=204 Identities=41% Similarity=0.676 Sum_probs=193.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCC-CCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~-~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
+||||||||||||.++|+|+++.+ .++++++|||+.++++++|||||||+||+|+++++. +++.|.+||+.|+|++++
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~-~~~~l~v~g~~i~v~~~~ 80 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQ-ERDQLFVGDDAIRLLHER 80 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEe-cCCEEEECCEEEEEEEcC
Confidence 689999999999999999998742 469999999999999999999999999999999987 688999999999999999
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCC-CCCCCeEEeccCcccCCCCCCceEecCCchhhh
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK-GADIPTYVVGVNEKDYDHEVANIVSNASCTTNC 244 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k-~~DiP~vV~GVN~~~~~~~~~~IISnaSCTTn~ 244 (304)
+|+++||.++|+||||||||.|+++++++.|+++|||||++|+|.+ +++ ++||||||++.|++. ++|||||||||||
T Consensus 81 ~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~-~~vV~gVN~~~~~~~-~~IISnasCTTn~ 158 (336)
T PRK13535 81 DIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLD-ATVVYGVNHDQLRAE-HRIVSNASCTTNC 158 (336)
T ss_pred CcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCC-CeEEeCcCHHHhCcC-CCEEECCchHHHH
Confidence 9999999999999999999999999999999999999999999975 544 599999999999886 7899999999999
Q ss_pred hhhHHHHHHhhcCceEEEEEEEeeccCccccccCCCCCCcccccccchhhh
Q 022023 245 LAPFVKVMDEELGIVKGAMTTTHSYTGDQVIRHTKMSTSLLERAPKIKLLL 295 (304)
Q Consensus 245 LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ~l~D~~~~h~d~RraRa~~~~~ 295 (304)
|+|++|+|||+|||+++.|||||+||++|+++|. +|+|+||+|++++-|
T Consensus 159 Lap~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~--~~~d~rr~r~~a~Ni 207 (336)
T PRK13535 159 IIPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDA--YHPDLRRTRAASQSI 207 (336)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEEhhcCCcchhhc--hhhccccccEeeecc
Confidence 9999999999999999999999999999999999 899999999988765
No 14
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=5.7e-63 Score=474.69 Aligned_cols=205 Identities=40% Similarity=0.645 Sum_probs=193.5
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC-CCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEe
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~-~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (304)
|++||||||||||||.++|++.++ .+++++++||+ .++++++|||||||+||+|+++++. +++.|.+||+.|+|++
T Consensus 1 m~ikigInG~GRiGr~v~r~~~~~--~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~-~g~~l~~~g~~i~v~~ 77 (334)
T PRK08955 1 MTIKVGINGFGRIGRLALRAAWDW--PELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTA-EGDAIVINGKRIRTTQ 77 (334)
T ss_pred CCeEEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEE-cCCEEEECCEEEEEEe
Confidence 458999999999999999998875 46999999994 7999999999999999999999986 6889999999999999
Q ss_pred cCCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcccCCCCCCceEecCCchhh
Q 022023 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTN 243 (304)
Q Consensus 164 ~~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~~~~~~~~~IISnaSCTTn 243 (304)
+++|++++|. |+||||||||.|+++++++.|+++|||||++|+|++++|+|+||||||++.|++..++||||||||||
T Consensus 78 ~~~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn 155 (334)
T PRK08955 78 NKAIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTN 155 (334)
T ss_pred cCChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHH
Confidence 9999999997 99999999999999999999999999999999999887889999999999998722689999999999
Q ss_pred hhhhHHHHHHhhcCceEEEEEEEeeccCccccccCCCCCCcccccccchhhhh
Q 022023 244 CLAPFVKVMDEELGIVKGAMTTTHSYTGDQVIRHTKMSTSLLERAPKIKLLLT 296 (304)
Q Consensus 244 ~LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ~l~D~~~~h~d~RraRa~~~~~~ 296 (304)
||+|+||+|||+|||+++.|||||+||++|+++|+ +|+|+||+|++++.|-
T Consensus 156 ~Lap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~--~~~d~r~~r~~a~NiI 206 (334)
T PRK08955 156 CLAPVVKVIHEKLGIKHGSMTTIHDLTNTQTILDA--PHKDLRRARACGMSLI 206 (334)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEeccCccccccC--CCcccccchhheeccc
Confidence 99999999999999999999999999999999999 8999999999998774
No 15
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=8.2e-63 Score=474.26 Aligned_cols=205 Identities=43% Similarity=0.720 Sum_probs=192.7
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC-CCccchhhccccccccccCCc-eEEEecCCeEEECCEEEEEE
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKA-DVKIVDNETISVDGKLIKVV 162 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~-~~~~~~ayLLkyDS~hG~f~g-~v~~~~~~~L~inGk~I~V~ 162 (304)
+++||||||||||||..+|.+.++ +++++|+|||+ .++++++|||||||+||+|++ ++++++++.|.+||+.|+|+
T Consensus 4 ~~lrVaI~G~GrIGr~~~r~~~~~--~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~ 81 (338)
T PLN02358 4 KKIRIGINGFGRIGRLVARVVLQR--DDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 81 (338)
T ss_pred CceEEEEEeecHHHHHHHHHHhhC--CCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEE
Confidence 458999999999999999998864 46999999996 799999999999999999996 99986678899999999999
Q ss_pred ecCCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcccCCCCCCceEecCCchh
Q 022023 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTT 242 (304)
Q Consensus 163 ~~~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~~~~~~~~~IISnaSCTT 242 (304)
+++||+++||.+.|+||||||||.|+++++++.|+++|||||+||+|++ |+|+||||||++.|++. ++|||||||||
T Consensus 82 ~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~--dvp~iV~gVN~~~~~~~-~~IISnasCTT 158 (338)
T PLN02358 82 GIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK--DAPMFVVGVNEHEYKSD-LDIVSNASCTT 158 (338)
T ss_pred EcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCC--CCCeEecCcCHHHhCCC-CCEEECCCchH
Confidence 9999999999999999999999999999999999999999999999974 68999999999999876 78999999999
Q ss_pred hhhhhHHHHHHhhcCceEEEEEEEeeccCccccccCCCCCCcccccccchhhh
Q 022023 243 NCLAPFVKVMDEELGIVKGAMTTTHSYTGDQVIRHTKMSTSLLERAPKIKLLL 295 (304)
Q Consensus 243 n~LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ~l~D~~~~h~d~RraRa~~~~~ 295 (304)
|||+|+||+||++|||+++.|||||+||++|+++|+ +.|+|+||+|++++-|
T Consensus 159 n~Lap~lk~L~~~fgI~~~~mTTiha~T~~q~l~d~-~~~~d~r~~ra~a~Ni 210 (338)
T PLN02358 159 NCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDG-PSMKDWRGGRAASFNI 210 (338)
T ss_pred HHHHHHHHHHHHhcCeeEEEEEEEEeecCcccccCC-CCCccccCcccccccc
Confidence 999999999999999999999999999999999998 2479999999999876
No 16
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=1.5e-60 Score=456.45 Aligned_cols=203 Identities=41% Similarity=0.716 Sum_probs=190.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC-CCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 88 KVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 88 kVaInGfGrIGR~vlR~l~~r~-~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
||||||||||||.++|+|+++. .++|++++|||..+.++++|||+|||+||+|+++++. +++.|.+||+.|+++++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~-~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKV-DGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEE-eCCEEEECCeEEEEEEcCC
Confidence 6999999999999999999874 3469999999998999999999999999999999987 6889999999999999999
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCC-CCCCCeEEeccCcccCCCCCCceEecCCchhhhh
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK-GADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k-~~DiP~vV~GVN~~~~~~~~~~IISnaSCTTn~L 245 (304)
|+++||.++|+|+||||||.|.+++++++|+++||++|++|+|.+ +++ ++||||||++.|++. ++||||||||||||
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~-~~vV~gVN~~~~~~~-~~IISnasCtTn~l 157 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLD-ATIVYGVNQQDLSAE-HTIVSNASCTTNCI 157 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCC-ceEEeccCHHHhCCC-CCEEeCCCcHHHHH
Confidence 999999999999999999999999999999999999999999965 434 489999999999876 78999999999999
Q ss_pred hhHHHHHHhhcCceEEEEEEEeeccCccccccCCCCCCcccccccchhhh
Q 022023 246 APFVKVMDEELGIVKGAMTTTHSYTGDQVIRHTKMSTSLLERAPKIKLLL 295 (304)
Q Consensus 246 aPvLKvL~d~fGI~~g~vTTvHa~T~dQ~l~D~~~~h~d~RraRa~~~~~ 295 (304)
+|++|+||++|||+++.|||||+||++|+++|. .|+|+||+|+|++-|
T Consensus 158 ap~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~--~~~d~r~~r~a~~Ni 205 (325)
T TIGR01532 158 VPLIKLLDDAIGIESGTITTIHSAMNDQQVIDA--YHHDLRRTRAASQSI 205 (325)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEhhcCCcccccc--chhhccccchHhhCe
Confidence 999999999999999999999999999999999 899999999998533
No 17
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=2.3e-49 Score=343.04 Aligned_cols=150 Identities=52% Similarity=0.864 Sum_probs=138.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCC-CccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~-~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
+||||||||||||+++|+++.+ +++++|+|||+. ++++++|||+|||+||+|+++++. +++.|.+||+.|++++++
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~--~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~-~~~~l~v~G~~I~~~~~~ 77 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQ--PDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEV-DDDGLIVNGKKIKVTEER 77 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTS--TTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEE-ETTEEEETTEEEEEEHTS
T ss_pred CEEEEECCCcccHHHHHhhccc--ceEEEEEEecccccchhhhhhhhccccccceeccccc-ccceeEeecccccchhhh
Confidence 5899999999999999999965 569999999996 999999999999999999999997 578899999999999999
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcccCCCCCCceEecCCc
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASC 240 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~~~~~~~~~IISnaSC 240 (304)
+|+++||+++|+||||||||.|++++.++.|+++||||||+|+|+++..+||||||||++.|+++ ++|||++||
T Consensus 78 dp~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~-~~iIS~aSC 151 (151)
T PF00044_consen 78 DPEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPE-HHIISNASC 151 (151)
T ss_dssp SGGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTT-TSEEEE--H
T ss_pred hhcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCC-CCEEEccCC
Confidence 99999999999999999999999999999999999999999999987548999999999999997 699999999
No 18
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5e-50 Score=372.82 Aligned_cols=186 Identities=45% Similarity=0.734 Sum_probs=173.6
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeCC-CCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCCCCCCCCccc
Q 022023 97 IGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAEL 175 (304)
Q Consensus 97 IGR~vlR~l~~r~~~~l~iVaInd~-~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~dP~~idw~~~ 175 (304)
|||+++ + +. ++++++|||+ ++++|++||++|||+||+|++++++ ++..+++||++|.++++++|..|+|.+.
T Consensus 1 ig~~~~---~-~~--~v~vv~indpfi~~~~~~y~~kydsthG~f~g~~k~-~~~~~i~~G~~i~~~~~~~p~~i~w~~~ 73 (285)
T KOG0657|consen 1 IGRLVL---Q-RN--SVDVVAINDPFIDLNYLAYMLKYDSTHGKFHGTVKA-ENFKLIINGNPITIFQFRDPAKIPWGAK 73 (285)
T ss_pred CCcccc---c-cC--CcccccccCcccccccccccccccccCCccccceee-cCCceeecCceEEeecccCcccCccccc
Confidence 577777 2 32 3999999997 8999999999999999999999998 5788899999999999999999999999
Q ss_pred CccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcccCCCCCCceEecCCchhhhhhhHHHHHHhh
Q 022023 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEE 255 (304)
Q Consensus 176 giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~~~~~~~~~IISnaSCTTn~LaPvLKvL~d~ 255 (304)
|+|+|+|+||.|.+.+++..|+++|+|||+|+||+. |.|+||+|||+++|+++ ..||||+|||||||+|+.|+|||+
T Consensus 74 g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~--dapmfv~gVn~~~y~~~-~~iiSnascttnclaPlaKVi~d~ 150 (285)
T KOG0657|consen 74 GADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSA--DAPMFVMGVNGEKYDNS-LDIISNASCTTNCLAPLAKVIHDN 150 (285)
T ss_pred cceeEeeccccccccccccccccccceEEEeccccC--CCCcccccccccccccc-cceeechhhhhccccchhheeccc
Confidence 999999999999999999999999999999999995 68999999999999987 559999999999999999999999
Q ss_pred cCceEEEEEEEeeccCccccccCCCCCCcccccccchh
Q 022023 256 LGIVKGAMTTTHSYTGDQVIRHTKMSTSLLERAPKIKL 293 (304)
Q Consensus 256 fGI~~g~vTTvHa~T~dQ~l~D~~~~h~d~RraRa~~~ 293 (304)
|||++|+|||+|++|++|+++|+ ++.|+||.+|.+.|
T Consensus 151 fgI~EgLMtTvha~tatQktvdg-ps~k~wr~g~~a~q 187 (285)
T KOG0657|consen 151 FGIMEGLMTTVHAITATQKTVDG-PSGKLWRDGRRALQ 187 (285)
T ss_pred cccccccccceeeeccccccccC-cccccccccchhhh
Confidence 99999999999999999999998 47789999997765
No 19
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=1.5e-44 Score=311.62 Aligned_cols=149 Identities=54% Similarity=0.877 Sum_probs=139.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
+||||+|||||||.++|.+.++ +++++++|+|+.++++++|||+|||+||+|.++++. +++.|.+||+.|+++++++
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~--~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~-~~~~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLER--PDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEV-DEDGLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEE-eCCEEEECCEEEEEEecCC
Confidence 5899999999999999998864 469999999988999999999999999999999987 5788999999999999999
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcccCCCCCCceEecCCc
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASC 240 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~~~~~~~~~IISnaSC 240 (304)
|.++||.++|+||||||||.|.+++.++.|+++||||||||+|+++ +.++||+|||++.|+++ ++||||+||
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~-~~~t~V~GvN~~~~~~~-~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKD-ADKTFVYGVNHDEYDPE-DHIVSNASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCC-CCceEEEeechHHcCCC-CCEEEcCCC
Confidence 9999999999999999999999999999999999999999999876 44699999999999986 679999999
No 20
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=1.3e-40 Score=319.83 Aligned_cols=180 Identities=17% Similarity=0.187 Sum_probs=153.6
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCcc---chhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVK---NASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 89 VaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~---~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
|||||||||||.++|++.++ +++++|+|||. +++ +++|+++|||+|+.+...++. +++.|.++|+
T Consensus 1 VaInG~GrIGr~varav~~~--~d~elVaVnD~-~~~~~a~lA~~lgyds~~~~~~~~~~~-~~~~l~v~g~-------- 68 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ--DDMKLVGVTKT-SPDFEAYRAKELGIPVYAASEEFIPRF-EEAGIEVAGT-------- 68 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC--CCcEEEEEecC-ChHHHHHHHHHhCCCEEeecCCcceEe-ccCceEecCC--------
Confidence 69999999999999998765 56999999994 777 788888999999544445665 4566777764
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcccCCCCCCceEecCCchhhhh
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~~~~~~~~~IISnaSCTTn~L 245 (304)
++++. .++|+|+||||.+...+.+..|++.|+|+|++++|.++...++||+|+|++.|.+. + ||||+|||||||
T Consensus 69 -~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~-~-~vs~aSCtTn~L 142 (333)
T TIGR01546 69 -LEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGK-D-YVRVVSCNTTGL 142 (333)
T ss_pred -HHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcC-c-eEEecCchHhhH
Confidence 44443 37999999999999999999999999999999999865324799999999999864 4 999999999999
Q ss_pred hhHHHHHHhhcCceEEEEEEEeeccCccccccCCCCCCcccccccchhhhh
Q 022023 246 APFVKVMDEELGIVKGAMTTTHSYTGDQVIRHTKMSTSLLERAPKIKLLLT 296 (304)
Q Consensus 246 aPvLKvL~d~fGI~~g~vTTvHa~T~dQ~l~D~~~~h~d~RraRa~~~~~~ 296 (304)
+|++|+|+++|||++|.|||+|+ |+||+ |+||||+.+++-|
T Consensus 143 ap~~~~L~~~fGI~~~~~Ttvh~-t~dq~---------d~rrgr~~~IiP~ 183 (333)
T TIGR01546 143 VRTLNAINDYSKVDKVRAVMVRR-AADPN---------DVKKGPINAIVPD 183 (333)
T ss_pred HHHHHHHHHhcCeEEEEEEEEee-cCChh---------hhccCchhceEeC
Confidence 99999999999999999999997 99995 7899997777655
No 21
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.98 E-value=1.8e-32 Score=263.67 Aligned_cols=166 Identities=22% Similarity=0.268 Sum_probs=134.2
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccc---cccccccCCceEEEecCCeEEECCEEEEEE
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK---YDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLk---yDS~hG~f~g~v~~~~~~~L~inGk~I~V~ 162 (304)
++||||||||||||.+++++.++ +++++++|+|. +.++.+||++ || .||+++..+...++..+.+.+
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~--~d~eLvav~d~-~~~~~~~la~~~G~~-~~~~~~~~~~~~~~~~i~V~~------ 70 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ--PDMELVGVAKT-KPDYEARVAVEKGYP-LYVADPEREKAFEEAGIPVAG------ 70 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC--CCcEEEEEECC-ChHHHHHHHHhcCCC-ccccCccccccccCCceEEcC------
Confidence 37999999999999999998865 56999999996 5788999987 44 567665544311223343333
Q ss_pred ecCCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCC--eEEeccCcccCCCCCCceEecCCc
Q 022023 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIP--TYVVGVNEKDYDHEVANIVSNASC 240 (304)
Q Consensus 163 ~~~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP--~vV~GVN~~~~~~~~~~IISnaSC 240 (304)
+++++. .++|+||||||.+...+.+..|+++| ++||+++|.+. ++| +||+|||++.+... +||+++||
T Consensus 71 ---~~~el~---~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~-~~~~~~~v~~vN~~~~~~~--~~v~~~sC 140 (341)
T PRK04207 71 ---TIEDLL---EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKA-EVAGVSFNALANYEEALGK--DYVRVVSC 140 (341)
T ss_pred ---ChhHhh---ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCC-CCCCCcEEeeECHHHhCCC--CcEEccCh
Confidence 233332 27999999999999999999999999 78999988653 433 47999999999764 49999999
Q ss_pred hhhhhhhHHHHHHhhcCceEEEEEEEeeccC
Q 022023 241 TTNCLAPFVKVMDEELGIVKGAMTTTHSYTG 271 (304)
Q Consensus 241 TTn~LaPvLKvL~d~fGI~~g~vTTvHa~T~ 271 (304)
|||||+|+||+|+++|||+++.|||+|++|+
T Consensus 141 tT~~l~~~l~~L~~~fgI~~~~vTtv~a~td 171 (341)
T PRK04207 141 NTTGLCRTLCALDRAFGVKKVRATLVRRAAD 171 (341)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEEEEEcCCC
Confidence 9999999999999999999999999999993
No 22
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.94 E-value=1.3e-26 Score=222.14 Aligned_cols=182 Identities=24% Similarity=0.335 Sum_probs=146.4
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
+||+|.| .|.+|+.++|+|.++..+.++++++... + + .++.+.++|..+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~-------------~---------~--~g~~l~~~g~~i~v~--- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASA-------------R---------S--AGKELSFKGKELKVE--- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcc-------------c---------c--CCCeeeeCCceeEEe---
Confidence 6899999 9999999999998864344565555321 1 0 234455677666664
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEe---CCCCCCCCCeEEeccCcccCCCC-CCceEecCCch
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT---APAKGADIPTYVVGVNEKDYDHE-VANIVSNASCT 241 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIIS---Ap~k~~DiP~vV~GVN~~~~~~~-~~~IISnaSCT 241 (304)
++...+|. ++|+||+|+|.+.+++.+++|+++|+ +||+ +++.++|+|++|||||++.|+.. +++|||||+|+
T Consensus 55 d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~C~ 130 (334)
T PRK14874 55 DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPNCS 130 (334)
T ss_pred eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECccHH
Confidence 45556784 89999999999999999999999999 7884 34565578999999999999763 13799999999
Q ss_pred hhhhhhHHHHHHhhcCceEEEEEEEeeccC------------ccccccCC-CCCCcccccccchhhhhhhh
Q 022023 242 TNCLAPFVKVMDEELGIVKGAMTTTHSYTG------------DQVIRHTK-MSTSLLERAPKIKLLLTDHV 299 (304)
Q Consensus 242 Tn~LaPvLKvL~d~fGI~~g~vTTvHa~T~------------dQ~l~D~~-~~h~d~RraRa~~~~~~~~~ 299 (304)
|+|++|.|++|+++|+|+++.|||+|++|+ +|+++|++ ..++++||+|+++.-+.-|.
T Consensus 131 ~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~ 201 (334)
T PRK14874 131 TIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHI 201 (334)
T ss_pred HHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcC
Confidence 999999999999999999999999999995 99999971 12478899999998876664
No 23
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.93 E-value=1.1e-25 Score=215.38 Aligned_cols=156 Identities=19% Similarity=0.262 Sum_probs=130.9
Q ss_pred cceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEec
Q 022023 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (304)
Q Consensus 86 ~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (304)
.++||| | +|.+||.++++|.+|+ |+ +.+. +|| +|-. .+ .+++|.|+|+.+.|.
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~---fp---v~~l-------~l~--~s~~------~s--~gk~i~f~g~~~~V~-- 56 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSD---LE---IEQI-------SIV--EIEP------FG--EEQGIRFNNKAVEQI-- 56 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcC---Cc---hhhe-------eec--cccc------cc--CCCEEEECCEEEEEE--
Confidence 368999 9 9999999999999986 66 4432 344 2210 11 468899999999995
Q ss_pred CCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeccCcccCCC-CCCceEecCCc
Q 022023 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDH-EVANIVSNASC 240 (304)
Q Consensus 165 ~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp---~k~~DiP~vV~GVN~~~~~~-~~~~IISnaSC 240 (304)
+.++.+|. ++||||+ +|...++++++...++|| +||+.. ++++|+|++||+||++.+.. ...+||+||+|
T Consensus 57 -~l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanPNC 130 (322)
T PRK06901 57 -APEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDP 130 (322)
T ss_pred -ECCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECCcH
Confidence 45566775 8999999 999999999999999999 899654 59999999999999998875 21579999999
Q ss_pred hhhhhhhHHHHHHhhcCceEEEEEEEeeccCcc
Q 022023 241 TTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQ 273 (304)
Q Consensus 241 TTn~LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ 273 (304)
||.+|+++||+||+.|||++..||||||+|+.-
T Consensus 131 sTi~l~~aL~pL~~~~~l~rv~VsTyQavSGaG 163 (322)
T PRK06901 131 QVSQLALALAPFLQEQPLSQIFVTSLLPASYTD 163 (322)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeecchhhcC
Confidence 999999999999999999999999999999874
No 24
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=99.92 E-value=1.2e-24 Score=209.52 Aligned_cols=178 Identities=23% Similarity=0.309 Sum_probs=138.0
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
||+|+| .|.+|+.++|+|.++..+.++++.+.. ++ + .+..+.+.|+.+.+... +
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as-------------~~---------~--~g~~~~~~~~~~~~~~~-~ 55 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLAS-------------DR---------S--AGRKVTFKGKELEVNEA-K 55 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEec-------------cc---------c--CCCeeeeCCeeEEEEeC-C
Confidence 689999 999999999999876433334322211 11 1 34555566655555322 2
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC---CCCCCCCCeEEeccCcccCCCC-CCceEecCCchh
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA---PAKGADIPTYVVGVNEKDYDHE-VANIVSNASCTT 242 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISA---p~k~~DiP~vV~GVN~~~~~~~-~~~IISnaSCTT 242 (304)
...|. ++|+||+|+|.+.+++.+++|+++|+ +||+. +++++|+|++|||||++.++.. .++|||||+|+|
T Consensus 56 --~~~~~--~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C~~ 129 (339)
T TIGR01296 56 --IESFE--GIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNCST 129 (339)
T ss_pred --hHHhc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCcHH
Confidence 23453 89999999999999999999999999 68854 3566679999999999999763 156999999999
Q ss_pred hhhhhHHHHHHhhcCceEEEEEEEeeccCc------------cccccCCCCCCc--------ccccccchhhhhhh
Q 022023 243 NCLAPFVKVMDEELGIVKGAMTTTHSYTGD------------QVIRHTKMSTSL--------LERAPKIKLLLTDH 298 (304)
Q Consensus 243 n~LaPvLKvL~d~fGI~~g~vTTvHa~T~d------------Q~l~D~~~~h~d--------~RraRa~~~~~~~~ 298 (304)
+|++++|++|+++|+|+++.|+|+|++|+. |++.+. .+++ .+|+|+++.-|--|
T Consensus 130 t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~--~~~~~~~~~~~~~~~~~~~~~NiIp~ 203 (339)
T TIGR01296 130 IQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEG--RENNPYIGAPKAKKFPYQIAFNAIPH 203 (339)
T ss_pred HHHHHHHHHHHHhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcC--CCCCccccccccccCCCcccccccCc
Confidence 999999999999999999999999999996 778887 6666 78899888544434
No 25
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.88 E-value=8.4e-23 Score=196.34 Aligned_cols=159 Identities=26% Similarity=0.371 Sum_probs=128.5
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCe-EEECCEEEEEEec
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNET-ISVDGKLIKVVSN 164 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~-L~inGk~I~V~~~ 164 (304)
+||||.| +|.+|+.+++.|.++. ..+..+ ++|. | +-+ .|+. +.+.|+.+.+..
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~-f~~~~~------------~~~A--S-------~rS--aG~~~~~f~~~~~~v~~- 56 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERH-FPFEEL------------VLLA--S-------ARS--AGKKYIEFGGKSIGVPE- 56 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcC-CCcceE------------EEEe--c-------ccc--cCCccccccCccccCcc-
Confidence 6899999 9999999999999874 223211 2231 2 222 2444 788888766632
Q ss_pred CCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeccCcccCCCC-CCc-eEecCC
Q 022023 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHE-VAN-IVSNAS 239 (304)
Q Consensus 165 ~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp---~k~~DiP~vV~GVN~~~~~~~-~~~-IISnaS 239 (304)
.-.+.++|. ++||||+|.|...+++.+++..++|+ +||++. ++++|+|+||++||.+.+... +.+ ||+||+
T Consensus 57 ~~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~IianpN 132 (334)
T COG0136 57 DAADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANPN 132 (334)
T ss_pred ccccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECCC
Confidence 125677887 89999999999999999999999998 999654 588899999999999986652 134 999999
Q ss_pred chhhhhhhHHHHHHhhcCceEEEEEEEeeccCccc
Q 022023 240 CTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQV 274 (304)
Q Consensus 240 CTTn~LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ~ 274 (304)
|||.+|++.||+|+++|||++.+|+||||+||.-.
T Consensus 133 Cst~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~ 167 (334)
T COG0136 133 CSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGA 167 (334)
T ss_pred hHHHHHHHHHHHHHhhcCceEEEEEEeehhhhcCc
Confidence 99999999999999999999999999999999866
No 26
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=99.88 E-value=6.4e-23 Score=199.76 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=126.3
Q ss_pred ceEEEEc-CCHHHHHHHHHHH-hCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEec
Q 022023 87 LKVAING-FGRIGRNFLRCWH-GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~-~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (304)
++|||+| +|.+|+.++++|. ++. |++ ... ++| .| .-+ ++..+.++|+.+.|..
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~---fp~---~~~-------~~~--ss-------~~s--~g~~~~f~~~~~~v~~- 55 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERD---FDA---IRP-------VFF--ST-------SQL--GQAAPSFGGTTGTLQD- 55 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCC---Ccc---ccE-------EEE--Ec-------hhh--CCCcCCCCCCcceEEc-
Confidence 3799999 9999999999888 554 552 111 122 22 111 4567788888876643
Q ss_pred CCCCCC-CCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeccCcccCCCC-CCce--Eec
Q 022023 165 RDPLQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHE-VANI--VSN 237 (304)
Q Consensus 165 ~dP~~i-dw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp---~k~~DiP~vV~GVN~~~~~~~-~~~I--ISn 237 (304)
.+++ .|. ++||||+|.|...+++++++..++|+..+||+.. ++++|+|++||+||++.+... +.+| |+|
T Consensus 56 --~~~~~~~~--~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ian 131 (366)
T TIGR01745 56 --AFDIDALK--ALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFVG 131 (366)
T ss_pred --Cccccccc--CCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEEC
Confidence 3343 564 8999999999999999999999999444889654 588999999999999988752 2567 899
Q ss_pred CCchhhhhhhHHHHHHhhcCceEEEEEEEeeccCcc
Q 022023 238 ASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQ 273 (304)
Q Consensus 238 aSCTTn~LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ 273 (304)
|+|||.+|+++|++||++|||+++.||||||+||.-
T Consensus 132 PNCst~~l~~aL~pL~~~~~i~~v~VsTyQAvSGAG 167 (366)
T TIGR01745 132 GNCTVSLMLMSLGGLFANDLVEWVSVATYQAASGGG 167 (366)
T ss_pred cCHHHHHHHHHHHHHHhccCccEEEEEechhhhhcC
Confidence 999999999999999999999999999999999986
No 27
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.81 E-value=4.1e-19 Score=172.19 Aligned_cols=158 Identities=18% Similarity=0.328 Sum_probs=126.3
Q ss_pred CcceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEe
Q 022023 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (304)
Q Consensus 85 ~~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (304)
..+||||+| +|.+|+.++|+|.+.. .|++ .++ +++ .|. -+ .|+.+.+.|+.+.+..
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~--~f~v---~~l-------~~~--aS~-------~s--aGk~~~~~~~~l~v~~ 60 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKET--KFNI---AEV-------TLL--SSK-------RS--AGKTVQFKGREIIIQE 60 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCC--CCCc---ccE-------EEE--ECc-------cc--CCCCeeeCCcceEEEe
Confidence 447999999 8999999999998532 3662 211 112 221 11 4677788888766653
Q ss_pred cCCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC---CCCCCCCCeEEeccCcccCCCCCCceEecCCc
Q 022023 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA---PAKGADIPTYVVGVNEKDYDHEVANIVSNASC 240 (304)
Q Consensus 164 ~~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISA---p~k~~DiP~vV~GVN~~~~~~~~~~IISnaSC 240 (304)
-+++ .|. ++|+||.|+|...+++.+++..++|+ +||+. .++++|+|++||+||.+.+... .+||+||+|
T Consensus 61 -~~~~--~~~--~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~-~~iIanPnC 132 (347)
T PRK06728 61 -AKIN--SFE--GVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEH-KGIIAVPNC 132 (347)
T ss_pred -CCHH--Hhc--CCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhcc-CCEEECCCC
Confidence 3454 353 79999999999999999999999998 77854 3577899999999999998764 479999999
Q ss_pred hhhhhhhHHHHHHhhcCceEEEEEEEeeccCcc
Q 022023 241 TTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQ 273 (304)
Q Consensus 241 TTn~LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ 273 (304)
+|++++..|+||+++++|++..|+|++++|+.-
T Consensus 133 ~tt~~~laL~PL~~~~~i~~v~V~t~qavSGAG 165 (347)
T PRK06728 133 SALQMVTALQPIRKVFGLERIIVSTYQAVSGSG 165 (347)
T ss_pred HHHHHHHHHHHHHHcCCccEEEEEEeecccccc
Confidence 999999999999999999999999999999864
No 28
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=99.80 E-value=6.9e-19 Score=169.95 Aligned_cols=159 Identities=21% Similarity=0.266 Sum_probs=128.0
Q ss_pred CcceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEe
Q 022023 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (304)
Q Consensus 85 ~~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (304)
+++||||+| +|.+|+.++|+|.+++.+.++++.+.. ++ + .|+.+.++|+.+.+.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS-------------~~---------s--aG~~~~~~~~~~~v~- 57 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALAS-------------EE---------S--AGETLRFGGKSVTVQ- 57 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEc-------------cC---------c--CCceEEECCcceEEE-
Confidence 468999999 999999999999987544556544421 11 1 356677888766664
Q ss_pred cCCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC---CCCCCCCCeEEeccCcccCCC-CCCceEecCC
Q 022023 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA---PAKGADIPTYVVGVNEKDYDH-EVANIVSNAS 239 (304)
Q Consensus 164 ~~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISA---p~k~~DiP~vV~GVN~~~~~~-~~~~IISnaS 239 (304)
++++++|. ++|+||+|++...+.++++..+++|+ +||+. .+.++|+|+++|+||.+.++. ...+||+||+
T Consensus 58 --~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~~~~iIAnPg 131 (336)
T PRK08040 58 --DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNIIAVAD 131 (336)
T ss_pred --eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEccccCHHHHhhhccCCEEECCC
Confidence 56778886 79999999999999999999999999 67754 345568999999999944332 1157999999
Q ss_pred chhhhhhhHHHHHHhhcCceEEEEEEEeeccCccc
Q 022023 240 CTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQV 274 (304)
Q Consensus 240 CTTn~LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ~ 274 (304)
|+|.+++..|+||+++++|++..|+|++++|+.-+
T Consensus 132 C~~t~~~laL~PL~~~~~i~~viV~t~qgvSGAG~ 166 (336)
T PRK08040 132 SLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGK 166 (336)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEeeccccccCh
Confidence 99999999999999999999999999999998764
No 29
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.79 E-value=5.7e-19 Score=172.39 Aligned_cols=160 Identities=17% Similarity=0.117 Sum_probs=123.1
Q ss_pred ceEEEEc-CCHHHHHHHH-HHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEec
Q 022023 87 LKVAING-FGRIGRNFLR-CWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR-~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (304)
++|||+| +|.+|+.++| +|.++. |+ +.+. ++ +.|.+ + .+..+.++|+.+.++..
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~---f~---~~~l-------~~--~ss~~-------s--g~~~~~f~g~~~~v~~~ 57 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEEND---FD---LIEP-------VF--FSTSQ-------A--GGAAPSFGGKEGTLQDA 57 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCC---CC---cCcE-------EE--ecchh-------h--CCcccccCCCcceEEec
Confidence 6899999 9999999998 555543 55 1211 01 12211 1 23335677877777654
Q ss_pred CCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeccCcccCCCC-CC--ceEecC
Q 022023 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHE-VA--NIVSNA 238 (304)
Q Consensus 165 ~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp---~k~~DiP~vV~GVN~~~~~~~-~~--~IISna 238 (304)
.+++ +|. ++|+||+|+|...+++++++..++|++.+||+.. ++++|+|++||+||.+.+... +. ++|+||
T Consensus 58 ~~~~--~~~--~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIanP 133 (369)
T PRK06598 58 FDID--ALK--KLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFVGG 133 (369)
T ss_pred CChh--Hhc--CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEEcC
Confidence 4444 353 7999999999999999999999999655788654 588899999999999987642 12 489999
Q ss_pred CchhhhhhhHHHHHHhhcCceEEEEEEEeeccCccc
Q 022023 239 SCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQV 274 (304)
Q Consensus 239 SCTTn~LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ~ 274 (304)
+|+|.+++..|+||++.++|++..++|+|++||.-+
T Consensus 134 nC~tt~~~laL~PL~~~~~i~~viVst~qavSGAG~ 169 (369)
T PRK06598 134 NCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAGA 169 (369)
T ss_pred ChHHHHHHHHHHHHHhcCCceEEEEEeeecccccCH
Confidence 999999999999999999999999999999999764
No 30
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=99.75 E-value=1.2e-17 Score=161.65 Aligned_cols=160 Identities=19% Similarity=0.260 Sum_probs=122.8
Q ss_pred ccCcceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEE
Q 022023 83 TVAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKV 161 (304)
Q Consensus 83 ~~~~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V 161 (304)
+..++||+|+| .|.+|+.++|+|.++..+.++++.+. |.. + .++.+.++|+.+.+
T Consensus 4 ~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~la---------------s~r-------s--aGk~~~~~~~~~~v 59 (344)
T PLN02383 4 TENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLA---------------SAR-------S--AGKKVTFEGRDYTV 59 (344)
T ss_pred cCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEE---------------ccC-------C--CCCeeeecCceeEE
Confidence 34678999999 99999999999987643344543332 110 1 24455556655544
Q ss_pred EecCCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC---CCCCCCCCeEEeccCcccCCCCC-----Cc
Q 022023 162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA---PAKGADIPTYVVGVNEKDYDHEV-----AN 233 (304)
Q Consensus 162 ~~~~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISA---p~k~~DiP~vV~GVN~~~~~~~~-----~~ 233 (304)
.. -+++ +|. ++|+||.|+|...+++++++..++|+ +||+. .++++++|++||+||.+.++..+ .+
T Consensus 60 ~~-~~~~--~~~--~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~ 132 (344)
T PLN02383 60 EE-LTED--SFD--GVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGA 132 (344)
T ss_pred Ee-CCHH--HHc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCc
Confidence 32 2332 343 79999999999999999999888998 56744 35667899999999999887531 34
Q ss_pred eEecCCchhhhhhhHHHHHHhhcCceEEEEEEEeeccCcc
Q 022023 234 IVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQ 273 (304)
Q Consensus 234 IISnaSCTTn~LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ 273 (304)
||+||+|+|.+++..|+||+++++|++..|+|++++|+.-
T Consensus 133 iIanPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGAG 172 (344)
T PLN02383 133 LIANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAG 172 (344)
T ss_pred EEECCCcHHHHHHHHHHHHHHcCCeeEEEEEeeecccccC
Confidence 9999999999999999999999999999999999999864
No 31
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.74 E-value=2.7e-17 Score=158.81 Aligned_cols=157 Identities=19% Similarity=0.245 Sum_probs=122.0
Q ss_pred cceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEec
Q 022023 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (304)
Q Consensus 86 ~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (304)
++||+|.| +|.+|+.++|+|.++..+.++++.+... .+ .|+.|.++|+.+.+.
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~------------~~------------aG~~l~~~~~~l~~~-- 57 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS------------ES------------AGHSVPFAGKNLRVR-- 57 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc------------cc------------CCCeeccCCcceEEe--
Confidence 37999999 9999999999999765344554444321 11 244555666555553
Q ss_pred CCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEe--C-CCCCCCCCeEEeccCcccCCC-CCCceEecCCc
Q 022023 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT--A-PAKGADIPTYVVGVNEKDYDH-EVANIVSNASC 240 (304)
Q Consensus 165 ~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIIS--A-p~k~~DiP~vV~GVN~~~~~~-~~~~IISnaSC 240 (304)
+++..+|. ++|+||.+++...+.++++..+++|+ +||+ + .+.+ |+|++||+||.+.++. .+.+||+||+|
T Consensus 58 -~~~~~~~~--~vD~vFla~p~~~s~~~v~~~~~~G~--~VIDlS~~fR~~-~~pl~lPEvn~~~i~~~~~~~iIAnPgC 131 (336)
T PRK05671 58 -EVDSFDFS--QVQLAFFAAGAAVSRSFAEKARAAGC--SVIDLSGALPSA-QAPNVVPEVNAERLASLAAPFLVSSPSA 131 (336)
T ss_pred -eCChHHhc--CCCEEEEcCCHHHHHHHHHHHHHCCC--eEEECchhhcCC-CCCEEecccCHHHHccccCCCEEECCCc
Confidence 33334563 89999999999989999999989998 4564 3 3454 8999999999998875 21479999999
Q ss_pred hhhhhhhHHHHHHhhcCceEEEEEEEeeccCccc
Q 022023 241 TTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQV 274 (304)
Q Consensus 241 TTn~LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ~ 274 (304)
+|.+++..|+||++.+++++..|+|++++|+.-+
T Consensus 132 ~~t~~~laL~PL~~~~~~~~v~v~t~~~vSGaG~ 165 (336)
T PRK05671 132 SAVALAVALAPLKGLLDIQRVQVTACLAVSSLGR 165 (336)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEEeecCcccCc
Confidence 9999999999999999999999999999998754
No 32
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=99.73 E-value=2.7e-17 Score=158.09 Aligned_cols=170 Identities=22% Similarity=0.290 Sum_probs=119.0
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCC-Cc-cchhhccccccccccCCceEEEecCCeEEECCEEEEEEe
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GV-KNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~-~~-~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (304)
+||+|+| .|.+|+.++|+|.++. .++++++-+.. .. +....++.+ ..++.+.+ .+ ..+.+.
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~--~~~l~~v~~~~~~~g~~~~~~~~~-~~~~~~~~--------~~----~~~~~~- 64 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHP--YFELAKVVASPRSAGKRYGEAVKW-IEPGDMPE--------YV----RDLPIV- 64 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC--CceEEEEEEChhhcCCcchhhccc-cccCCCcc--------cc----ceeEEE-
Confidence 4899999 8999999999988763 47887774320 00 101111100 00000000 00 112232
Q ss_pred cCCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC-CCCCCCCCeEEeccCcccCCCC--------CCce
Q 022023 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA-PAKGADIPTYVVGVNEKDYDHE--------VANI 234 (304)
Q Consensus 164 ~~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISA-p~k~~DiP~vV~GVN~~~~~~~--------~~~I 234 (304)
..+++ .| .++|+|++|++.....+.+....++|++.+..|+ .+.+++.|.+++++|++.|... +.+|
T Consensus 65 ~~~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~i 140 (341)
T TIGR00978 65 EPEPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFI 140 (341)
T ss_pred eCCHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCCEEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccE
Confidence 12333 34 3799999999999999999888889996444454 3456678999999999876521 1359
Q ss_pred EecCCchhhhhhhHHHHHHhhcCceEEEEEEEeeccCccccc
Q 022023 235 VSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQVIR 276 (304)
Q Consensus 235 ISnaSCTTn~LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ~l~ 276 (304)
|+||+|+|+|+++.|++|+++++|+++.|+|+|++|+.++..
T Consensus 141 VanPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~~ 182 (341)
T TIGR00978 141 VTNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAGYPG 182 (341)
T ss_pred EeCCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCCC
Confidence 999999999999999999999999999999999999999864
No 33
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.72 E-value=3.7e-17 Score=157.61 Aligned_cols=171 Identities=23% Similarity=0.328 Sum_probs=117.5
Q ss_pred CcceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEE-eCCCCccch-hhccccccccccCCceEEEecCCeEEECCEEEEE
Q 022023 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV-NDSGGVKNA-SHLLKYDSLLGTFKADVKIVDNETISVDGKLIKV 161 (304)
Q Consensus 85 ~~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaI-nd~~~~~~~-ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V 161 (304)
|++||+|+| +|.+|+.++|+|.++ +.++++.+ ......... ..++.+ ..+|.+.+.. +.+.+
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~--p~~el~~~~~s~~~~G~~~~~~~~~-~~~~~~~~~~------------~~~~v 66 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANH--PWFEVTALAASERSAGKTYGEAVRW-QLDGPIPEEV------------ADMEV 66 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcC--CCceEEEEEcChhhcCCcccccccc-cccccccccc------------cceEE
Confidence 568999999 999999999999865 45788887 332111100 000000 0001111100 11233
Q ss_pred EecCCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC-CCCCCCCCeEEeccCcccCCC-----C----C
Q 022023 162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA-PAKGADIPTYVVGVNEKDYDH-----E----V 231 (304)
Q Consensus 162 ~~~~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISA-p~k~~DiP~vV~GVN~~~~~~-----~----~ 231 (304)
. ..+|+. |. ++|+|++|++.....+.+...++.|++.+.+|+ .+..+++|.+++++|++.|.. . +
T Consensus 67 ~-~~~~~~--~~--~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~~ 141 (349)
T PRK08664 67 V-STDPEA--VD--DVDIVFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWD 141 (349)
T ss_pred E-eCCHHH--hc--CCCEEEEeCChhHHHHHHHHHHHCCCEEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccCC
Confidence 2 234544 32 789999999999888888777788985444444 233346899999999986632 0 0
Q ss_pred CceEecCCchhhhhhhHHHHHHhhcCceEEEEEEEeeccCccccc
Q 022023 232 ANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQVIR 276 (304)
Q Consensus 232 ~~IISnaSCTTn~LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ~l~ 276 (304)
.+|||||+|+|+|+++.|++|++ |||+++.|+|+|++|++++-.
T Consensus 142 ~~iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~~~ 185 (349)
T PRK08664 142 GFIVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAGYPG 185 (349)
T ss_pred ceEEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCccc
Confidence 25999999999999999999999 999999999999999998743
No 34
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.57 E-value=2.1e-14 Score=138.49 Aligned_cols=165 Identities=17% Similarity=0.151 Sum_probs=118.2
Q ss_pred CcceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEe
Q 022023 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (304)
Q Consensus 85 ~~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (304)
|++||+|.| .|.+|+.+++.|.++ +.++++++.+..... ..+ ...|+.+. +.....+.
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~--p~~elv~v~~~~~~g---~~l--~~~~~~~~--------------~~~~~~~~ 59 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNH--PEVEIVAVTSRSSAG---KPL--SDVHPHLR--------------GLVDLVLE 59 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcC--CCceEEEEECccccC---cch--HHhCcccc--------------cccCceee
Confidence 347999999 699999999999865 457887776521110 001 01111110 10000111
Q ss_pred cCCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCC-C------------------CCeEEec
Q 022023 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGA-D------------------IPTYVVG 221 (304)
Q Consensus 164 ~~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp---~k~~-D------------------iP~vV~G 221 (304)
+.++..|. ++|+|+.|++.....+.+...+++|+ +||+.. +.++ | +|..+++
T Consensus 60 --~~~~~~~~--~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe 133 (343)
T PRK00436 60 --PLDPEILA--GADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPE 133 (343)
T ss_pred --cCCHHHhc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCc
Confidence 12222333 68999999999999999999888887 777543 4533 4 7999999
Q ss_pred cCcccCCCCCCceEecCCchhhhhhhHHHHHHhhcCce--EEEEEEEeeccCccc-cccC
Q 022023 222 VNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIV--KGAMTTTHSYTGDQV-IRHT 278 (304)
Q Consensus 222 VN~~~~~~~~~~IISnaSCTTn~LaPvLKvL~d~fGI~--~g~vTTvHa~T~dQ~-l~D~ 278 (304)
+|.+.++. .+||+||+|+|.+++..|+||++..+|+ +.+|+|++++||.-+ .++.
T Consensus 134 ~~~~~i~~--~~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~ 191 (343)
T PRK00436 134 LNREEIKG--ARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEG 191 (343)
T ss_pred cCHHHhcC--CCEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCcccc
Confidence 99999875 4899999999999999999999999898 899999999998765 4444
No 35
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=99.51 E-value=9.3e-15 Score=127.40 Aligned_cols=49 Identities=37% Similarity=0.524 Sum_probs=45.5
Q ss_pred hhhHHHHHHhhcCceEEEEEEEeeccCccccccCCCCCCcccccccchhhh
Q 022023 245 LAPFVKVMDEELGIVKGAMTTTHSYTGDQVIRHTKMSTSLLERAPKIKLLL 295 (304)
Q Consensus 245 LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ~l~D~~~~h~d~RraRa~~~~~ 295 (304)
|+|++|+|+|+|||+++.|||+|+||++|+++|+ +|+||||||++++.+
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~--~~~d~rrgr~a~~ni 49 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDG--PHKDWRRGRAAAQNI 49 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS----SSTGTTSBTTTSS
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCccceeee--ccccccccccccccc
Confidence 7999999999999999999999999999999999 999999999999865
No 36
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=99.50 E-value=1e-13 Score=133.94 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=114.1
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCE-EEEEEec
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGK-LIKVVSN 164 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk-~I~V~~~ 164 (304)
+||+|.| +|.+|+.++|.|.++ +.++++++-+... .....+ ...|+.+. +. ...+ ..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h--P~~el~~l~~s~~--sagk~~--~~~~~~l~--------------~~~~~~~-~~ 59 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH--PEVEITYLVSSRE--SAGKPV--SEVHPHLR--------------GLVDLNL-EP 59 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC--CCceEEEEeccch--hcCCCh--HHhCcccc--------------ccCCcee-ec
Confidence 5899999 799999999999865 4578775532200 000000 11111111 10 0112 11
Q ss_pred CCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC---CCCCC-------------------CCCeEEecc
Q 022023 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA---PAKGA-------------------DIPTYVVGV 222 (304)
Q Consensus 165 ~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISA---p~k~~-------------------DiP~vV~GV 222 (304)
.+++ +|.+ ++|+||.|++.....+.+.+.+++|+ +||+. .+.++ +.|..++++
T Consensus 60 ~~~~--~~~~-~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~ 134 (346)
T TIGR01850 60 IDEE--EIAE-DADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPEL 134 (346)
T ss_pred CCHH--Hhhc-CCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCcc
Confidence 1222 2322 78999999999999999999888886 56643 34553 589999999
Q ss_pred CcccCCCCCCceEecCCchhhhhhhHHHHHHhhcCce--EEEEEEEeeccCccc
Q 022023 223 NEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIV--KGAMTTTHSYTGDQV 274 (304)
Q Consensus 223 N~~~~~~~~~~IISnaSCTTn~LaPvLKvL~d~fGI~--~g~vTTvHa~T~dQ~ 274 (304)
|.+.+.. .+||+||+|.+.++...|+||++++.|+ +..|+|++++||.-+
T Consensus 135 n~~~i~~--~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~ 186 (346)
T TIGR01850 135 HREEIKG--ARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGR 186 (346)
T ss_pred CHHHhCC--CcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCc
Confidence 9998875 4799999999999999999999998887 799999999999876
No 37
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=99.47 E-value=2.8e-13 Score=130.03 Aligned_cols=141 Identities=12% Similarity=0.102 Sum_probs=107.5
Q ss_pred CcceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEe
Q 022023 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (304)
Q Consensus 85 ~~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (304)
|++||||+| +|-+|+.++|+|.+++ .++++.+... ++..+
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp--~~~l~~~~s~--------------------------~~~~~----------- 41 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRS--DIELLSIPEA--------------------------KRKDA----------- 41 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCC--CeEEEEEecC--------------------------CCCcc-----------
Confidence 568999999 9999999999998874 5776655421 01101
Q ss_pred cCCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC---CCCCCCCCeEEeccCcccCCC-CCCceEecCC
Q 022023 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA---PAKGADIPTYVVGVNEKDYDH-EVANIVSNAS 239 (304)
Q Consensus 164 ~~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISA---p~k~~DiP~vV~GVN~~~~~~-~~~~IISnaS 239 (304)
.+.+..|. ++|+||.|++...+++++++..+.|+ +||+. .+.+++.|..++++|++..+. ...++|+||+
T Consensus 42 --~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~~~~IanPg 115 (313)
T PRK11863 42 --AARRELLN--AADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVANPG 115 (313)
T ss_pred --cCchhhhc--CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhhcCCeEEcCC
Confidence 11223454 68999999999999999999888899 56644 356668999999998653322 1157999999
Q ss_pred chhhhhhhHHHHHHhhcCceEEEEEEEeecc
Q 022023 240 CTTNCLAPFVKVMDEELGIVKGAMTTTHSYT 270 (304)
Q Consensus 240 CTTn~LaPvLKvL~d~fGI~~g~vTTvHa~T 270 (304)
|.+.++...|+||+++..|++..+++++++|
T Consensus 116 C~~Ta~~laL~PL~~~~li~~~~~i~i~a~S 146 (313)
T PRK11863 116 CYPTGAIALLRPLVDAGLLPADYPVSINAVS 146 (313)
T ss_pred cHHHHHHHHHHHHHHcCCcccCceEEEEEcc
Confidence 9999999999999998666666578999995
No 38
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=99.45 E-value=5.1e-13 Score=131.16 Aligned_cols=164 Identities=11% Similarity=0.049 Sum_probs=112.9
Q ss_pred CcceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEe
Q 022023 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (304)
Q Consensus 85 ~~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (304)
+++||+|.| +|.+|+.++|+|.++. .++++.+... +..|+- +.. .... +.+..+.-+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP--~~el~~l~s~-------------~saG~~---i~~-~~~~--l~~~~~~~~~ 95 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHP--DFEITVMTAD-------------RKAGQS---FGS-VFPH--LITQDLPNLV 95 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCC--CCeEEEEECh-------------hhcCCC---chh-hCcc--ccCcccccee
Confidence 668999999 9999999999999873 4676665431 111110 000 0000 1111111111
Q ss_pred cCCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC---CCCCCC--------CCeEEeccCccc-CC---
Q 022023 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA---PAKGAD--------IPTYVVGVNEKD-YD--- 228 (304)
Q Consensus 164 ~~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISA---p~k~~D--------iP~vV~GVN~~~-~~--- 228 (304)
+.+..+|. ++|+||.|+|...+.+.++. ++.|+ +||+. ...+++ +|..++++|.+. |.
T Consensus 96 --~~~~~~~~--~~DvVf~Alp~~~s~~i~~~-~~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE 168 (381)
T PLN02968 96 --AVKDADFS--DVDAVFCCLPHGTTQEIIKA-LPKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTE 168 (381)
T ss_pred --cCCHHHhc--CCCEEEEcCCHHHHHHHHHH-HhCCC--EEEEcCchhccCCcccchhccCCCCCCcccchhhhcccch
Confidence 11222353 79999999999888888887 57776 45533 346556 788888888873 43
Q ss_pred ------CCCCceEecCCchhhhhhhHHHHHHhhcCc--eEEEEEEEeeccCcccccc
Q 022023 229 ------HEVANIVSNASCTTNCLAPFVKVMDEELGI--VKGAMTTTHSYTGDQVIRH 277 (304)
Q Consensus 229 ------~~~~~IISnaSCTTn~LaPvLKvL~d~fGI--~~g~vTTvHa~T~dQ~l~D 277 (304)
.. .+||+||+|.|+++...|+||+++++| ++..|+|++++|+.-+-..
T Consensus 169 ~~r~~i~~-~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~ 224 (381)
T PLN02968 169 LQREEIKS-ARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAK 224 (381)
T ss_pred hCHHHhcC-CCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCcccc
Confidence 12 579999999999999999999999999 7899999999999765443
No 39
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.37 E-value=1e-12 Score=125.63 Aligned_cols=163 Identities=23% Similarity=0.184 Sum_probs=113.8
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEec
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (304)
+++||||+|+|.||+.++..+.+. +.++++++.|. +.+... +++-.-+|. ... +.+-. .++
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~--~~velvAVvdi-d~es~g--la~A~~~Gi---~~~--------~~~ie-~LL-- 63 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRS--EHLEPGAMVGI-DPESDG--LARARRLGV---ATS--------AEGID-GLL-- 63 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcC--CCcEEEEEEeC-ChhhHH--HHHHHHcCC---Ccc--------cCCHH-HHH--
Confidence 368999999999999888777652 46999999876 332111 111111221 000 01100 011
Q ss_pred CCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC-CCCCCCCCeEEeccCcccCCCC-CCceEecCCchh
Q 022023 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA-PAKGADIPTYVVGVNEKDYDHE-VANIVSNASCTT 242 (304)
Q Consensus 165 ~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISA-p~k~~DiP~vV~GVN~~~~~~~-~~~IISnaSCTT 242 (304)
+..+|. ++|+||++||.....+.+.+.+++|+ .+|.. |.. ..|++||+||.+.+... ..+||+|++|+|
T Consensus 64 ---~~~~~~--dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~--~~PlvVP~VN~~~~~~~~~~~iia~p~~at 134 (302)
T PRK08300 64 ---AMPEFD--DIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAA--IGPYCVPAVNLDEHLDAPNVNMVTCGGQAT 134 (302)
T ss_pred ---hCcCCC--CCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccc--cCCcccCcCCHHHHhcccCCCEEECccHHH
Confidence 122454 68999999999999999999999998 56654 543 57999999999977542 158999999999
Q ss_pred hhhhhHHHHHHhhcCceEEEEEEEeecc---Ccccccc
Q 022023 243 NCLAPFVKVMDEELGIVKGAMTTTHSYT---GDQVIRH 277 (304)
Q Consensus 243 n~LaPvLKvL~d~fGI~~g~vTTvHa~T---~dQ~l~D 277 (304)
+.++..|+++++. ++.+.. +||.+.+ ++..-+|
T Consensus 135 i~~v~Al~~v~~~-~~~eIv-at~~s~s~g~gtr~nid 170 (302)
T PRK08300 135 IPIVAAVSRVAPV-HYAEIV-ASIASKSAGPGTRANID 170 (302)
T ss_pred HHHHHHhcccCcC-ceeeee-eeehhhccCCcccccHH
Confidence 9999999998755 788876 8999888 4344455
No 40
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.36 E-value=6.1e-13 Score=124.94 Aligned_cols=167 Identities=20% Similarity=0.310 Sum_probs=114.8
Q ss_pred eEE-EEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 88 KVA-ING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 88 kVa-InG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
|+| |.| +|.+|..++-+|.++ +.|.+-++.-. .++-=-+|. .-|+|..+.-. .-.-..+.| .+-
T Consensus 5 k~a~vlGaTGaVGQrFi~lLsdh--P~f~ikvLgAS----~RSAGK~ya-~a~~wkqt~~l------p~~~~e~~V-~ec 70 (361)
T KOG4777|consen 5 KSAPVLGATGAVGQRFISLLSDH--PYFSIKVLGAS----KRSAGKRYA-FAGNWKQTDLL------PESAHEYTV-EEC 70 (361)
T ss_pred cccceeeccchhHHHHHHHhccC--Ccceeeeeccc----ccccCCceE-ecccchhcccc------cchhhhhhH-hhc
Confidence 456 999 999999999988876 34664444211 000000010 01222111110 000023333 234
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeccCcccCCC----------CCC
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDH----------EVA 232 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp---~k~~DiP~vV~GVN~~~~~~----------~~~ 232 (304)
+++.|. +.||||...+.....|.-+...++|- +|+|.. ++.+++|++||.||+|.++. .+-
T Consensus 71 ~~~~F~----ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~~G 144 (361)
T KOG4777|consen 71 TADSFN----ECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMGKG 144 (361)
T ss_pred Chhhcc----cccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccCCCCCc
Confidence 666664 89999999999888888888888888 888753 46668999999999996542 113
Q ss_pred ceEecCCchhhhhhhHHHHHHhhc-CceEEEEEEEeeccCccc
Q 022023 233 NIVSNASCTTNCLAPFVKVMDEEL-GIVKGAMTTTHSYTGDQV 274 (304)
Q Consensus 233 ~IISnaSCTTn~LaPvLKvL~d~f-GI~~g~vTTvHa~T~dQ~ 274 (304)
-||.|++|+|..++..||+||++| .|.+..++|+|+.+|.--
T Consensus 145 ~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGAG~ 187 (361)
T KOG4777|consen 145 AIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGAGA 187 (361)
T ss_pred eEEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccCCc
Confidence 499999999999999999999999 599999999999998754
No 41
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=99.25 E-value=3.5e-11 Score=115.56 Aligned_cols=140 Identities=14% Similarity=0.139 Sum_probs=106.3
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
.||+|.| .|-.|..++|+|..+ +.++++.+... + . +...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H--P~~el~~l~s~-------------~--------------~-----------~~~~ 41 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR--DDIELLSIAPD-------------R--------------R-----------KDAA 41 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC--CCeEEEEEecc-------------c--------------c-----------cCcC
Confidence 4899999 899999999999876 45887666421 0 0 0001
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC---CCCCCCCCeEEeccCcccCCC-CCCceEecCCch
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA---PAKGADIPTYVVGVNEKDYDH-EVANIVSNASCT 241 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISA---p~k~~DiP~vV~GVN~~~~~~-~~~~IISnaSCT 241 (304)
+++++ + .++|+||.|++...++++++...++|+ +||+. .+.+++.|..+|++|.+..+. ...++|+||+|.
T Consensus 42 ~~~~~-~--~~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~ 116 (310)
T TIGR01851 42 ERAKL-L--NAADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCY 116 (310)
T ss_pred CHhHh-h--cCCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCH
Confidence 12222 1 268999999999999999998888888 56644 356668999999998653322 115799999999
Q ss_pred hhhhhhHHHHHHhhcCceEEEEEEEeeccC
Q 022023 242 TNCLAPFVKVMDEELGIVKGAMTTTHSYTG 271 (304)
Q Consensus 242 Tn~LaPvLKvL~d~fGI~~g~vTTvHa~T~ 271 (304)
+.++...|+||.++..|++..++++++.|+
T Consensus 117 aTa~~LaL~PL~~~~li~~~~~~~~~a~SG 146 (310)
T TIGR01851 117 PTGFIALMRPLVEAGILPADFPITINAVSG 146 (310)
T ss_pred HHHHHHHHHHHHHcCCccccceEEEEeccc
Confidence 999999999999986676766899999986
No 42
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.10 E-value=4.1e-10 Score=107.10 Aligned_cols=153 Identities=22% Similarity=0.220 Sum_probs=107.8
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
++||||+|.|+||+.++..+.+. ..+++++|.+. +.+... +++...+|. ...+++... ++ .
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~--~~~elvaV~d~-d~es~~--la~A~~~Gi-----------~~~~~~~e~-ll--~ 61 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRS--EHLEMVAMVGI-DPESDG--LARARELGV-----------KTSAEGVDG-LL--A 61 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhC--CCcEEEEEEeC-CcccHH--HHHHHHCCC-----------CEEECCHHH-Hh--c
Confidence 37899999999999887766643 45899999876 332211 111111111 011111000 00 1
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEe-CCCCCCCCCeEEeccCcccCCCC-CCceEecCCchhh
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT-APAKGADIPTYVVGVNEKDYDHE-VANIVSNASCTTN 243 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIIS-Ap~k~~DiP~vV~GVN~~~~~~~-~~~IISnaSCTTn 243 (304)
+ .++|+|+++|+.....+.+...+++|+ .||. .|.. ..|++|+.||.+..... ..++|+++.|.|+
T Consensus 62 ~--------~dIDaV~iaTp~~~H~e~a~~al~aGk--~VIdekPa~--~~plvvp~VN~~~~~~~~~~~iv~c~~~ati 129 (285)
T TIGR03215 62 N--------PDIDIVFDATSAKAHARHARLLAELGK--IVIDLTPAA--IGPYVVPAVNLDEHLDAPNVNMVTCGGQATI 129 (285)
T ss_pred C--------CCCCEEEECCCcHHHHHHHHHHHHcCC--EEEECCccc--cCCccCCCcCHHHHhcCcCCCEEEcCcHHHH
Confidence 1 268999999999999999999999997 4444 4553 57999999998876541 1589999999999
Q ss_pred hhhhHHHHHHhhcCceEEEEEEEeeccC
Q 022023 244 CLAPFVKVMDEELGIVKGAMTTTHSYTG 271 (304)
Q Consensus 244 ~LaPvLKvL~d~fGI~~g~vTTvHa~T~ 271 (304)
.++..++.+++...+ ..++||++.+.
T Consensus 130 p~~~al~r~~d~~~~--~iv~ti~s~S~ 155 (285)
T TIGR03215 130 PIVAAISRVAPVHYA--EIVASIASRSA 155 (285)
T ss_pred HHHHHHHHhhccccE--EEEEEEEeecc
Confidence 999999999998755 67788999986
No 43
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.74 E-value=8e-09 Score=85.25 Aligned_cols=115 Identities=24% Similarity=0.268 Sum_probs=75.4
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
||+|+| +|.+|+.++|+|.+. +.++++.+-.... ..-.++...++.+.+ ...+.+.. .+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h--p~~e~~~~~~~~~----~~g~~~~~~~~~~~~-------------~~~~~~~~-~~ 60 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH--PDFELVALVSSSR----SAGKPLSEVFPHPKG-------------FEDLSVED-AD 60 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--STEEEEEEEESTT----TTTSBHHHTTGGGTT-------------TEEEBEEE-TS
T ss_pred CEEEECCCCHHHHHHHHHHhcC--CCccEEEeeeecc----ccCCeeehhcccccc-------------ccceeEee-cc
Confidence 799999 999999999999985 4688777654311 000111222221111 11223322 23
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeccCcccCC
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYD 228 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp---~k~~DiP~vV~GVN~~~~~ 228 (304)
++.+ .++|+||.|++.....+.++..++.|+ .||+.. +.+++.|+++|+||.+.+.
T Consensus 61 ~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 61 PEEL----SDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp GHHH----TTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred hhHh----hcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 3333 389999999999999999999999999 667543 3555899999999988663
No 44
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.84 E-value=4.1e-05 Score=62.70 Aligned_cols=113 Identities=26% Similarity=0.266 Sum_probs=66.4
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
||+|.| .|.+|+.+++.+.+.+ .++++++... + ......++ ..+++ + -.+.. .+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~--~~~l~av~~~-~-~~~~~~~~--~~~~~------------~------~~~~~-~~ 55 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHP--DFEVVALAAS-A-RSAGKRVS--EAGPH------------L------KGEVV-LE 55 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCC--CceEEEEEec-h-hhcCcCHH--HHCcc------------c------ccccc-cc
Confidence 689999 6999999999887643 4788888432 0 00000000 00110 0 00100 12
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHH---HHHHcCCCEEEEeCC---CCCCCCCeEEeccCcccC
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAG---KHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDY 227 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~---~Hl~aGakkVIISAp---~k~~DiP~vV~GVN~~~~ 227 (304)
.+..+|...+.|+||.|++.....+... ..++.|+ ++|... +.+++.|.+++++|.+.+
T Consensus 56 ~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~ 120 (122)
T smart00859 56 LEPEDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAI 120 (122)
T ss_pred cccCChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHh
Confidence 2223444458899999999887776433 2334565 777432 355678999999997754
No 45
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.77 E-value=9.5e-05 Score=72.43 Aligned_cols=144 Identities=18% Similarity=0.278 Sum_probs=91.2
Q ss_pred CcceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEe
Q 022023 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (304)
Q Consensus 85 ~~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (304)
|++||+|+| .|-.|-+++|+|.++. .+++..+... ++.--- +...|..+.+-+ + .++ +
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp--~ve~~~~ss~---~~~g~~--~~~~~p~l~g~~----------~---l~~-~ 59 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHP--DVELILISSR---ERAGKP--VSDVHPNLRGLV----------D---LPF-Q 59 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC--CeEEEEeech---hhcCCc--hHHhCccccccc----------c---ccc-c
Confidence 458999999 8999999999999874 5775444321 000000 001111111110 0 111 1
Q ss_pred cCCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCC-C--------------C-CCeEEec---
Q 022023 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKG-A--------------D-IPTYVVG--- 221 (304)
Q Consensus 164 ~~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp---~k~-~--------------D-iP~vV~G--- 221 (304)
.-+++.+ ...++|+||.|+.-..+++.++..++.|++ ||+.. +.. + | ..--|||
T Consensus 60 ~~~~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~~--VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpE 135 (349)
T COG0002 60 TIDPEKI--ELDECDVVFLALPHGVSAELVPELLEAGCK--VIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPE 135 (349)
T ss_pred cCChhhh--hcccCCEEEEecCchhHHHHHHHHHhCCCe--EEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcc
Confidence 2344444 233689999999999999999999999995 56432 211 0 0 1245655
Q ss_pred cCcccCCCCCCceEecCCchhhhhhhHHHHHHhh
Q 022023 222 VNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEE 255 (304)
Q Consensus 222 VN~~~~~~~~~~IISnaSCTTn~LaPvLKvL~d~ 255 (304)
.|.+++.. -+.|+||.|-.+|....|+||-++
T Consensus 136 l~~e~i~~--A~lIAnPGCypTa~iLal~PL~~~ 167 (349)
T COG0002 136 LHREKIRG--AKLIANPGCYPTAAILALAPLVKA 167 (349)
T ss_pred cCHHHHhc--CCEeeCCCchHHHHHHHHHHHHHc
Confidence 45555654 479999999999999999999876
No 46
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.63 E-value=4.9e-05 Score=72.10 Aligned_cols=92 Identities=18% Similarity=0.321 Sum_probs=64.2
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEec
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (304)
|.+||||+|+|.||+.+++.|.......+++++|.+. +.+....+. +. .++.
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~-~~~~~~~~~------------------------~~-~~~~-- 52 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRN-AADLPPALA------------------------GR-VALL-- 52 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecC-CHHHHHHhh------------------------cc-Cccc--
Confidence 4579999999999999999886532345788888765 111110000 00 1222
Q ss_pred CCCCCC-CCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 022023 165 RDPLQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (304)
Q Consensus 165 ~dP~~i-dw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIIS 207 (304)
.+++++ .| ..|+||||.|.-.-++++.+.|++|+.-+++|
T Consensus 53 ~~l~~ll~~---~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~S 93 (267)
T PRK13301 53 DGLPGLLAW---RPDLVVEAAGQQAIAEHAEGCLTAGLDMIICS 93 (267)
T ss_pred CCHHHHhhc---CCCEEEECCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 345553 44 58999999999999999999999999877776
No 47
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.30 E-value=0.00068 Score=63.50 Aligned_cols=91 Identities=24% Similarity=0.292 Sum_probs=57.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCC-CccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~-~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
+||||.|+|+||+.+++.+... +.+++++|-+.. ..+... +.+ +..+.++ .
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~--~~~~l~~v~~~~~~~~~~~---------------------~~~---~~~~~~~--~ 53 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHD--PDLRVDWVIVPEHSIDAVR---------------------RAL---GEAVRVV--S 53 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhC--CCceEEEEEEcCCCHHHHh---------------------hhh---ccCCeee--C
Confidence 6999999999999999988754 346766664320 100000 000 0012232 2
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp 209 (304)
+.+++ +..+|+|+|||+...-.+.+...|++|.. |++-.|
T Consensus 54 d~~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk~-Vvi~s~ 93 (265)
T PRK13303 54 SVDAL---PQRPDLVVECAGHAALKEHVVPILKAGID-CAVISV 93 (265)
T ss_pred CHHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCC-EEEeCh
Confidence 44444 23689999999998888999999999975 444333
No 48
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.17 E-value=0.0011 Score=64.26 Aligned_cols=37 Identities=30% Similarity=0.560 Sum_probs=30.0
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCC-------CCCceEEEEeCC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS 121 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~-------~~~l~iVaInd~ 121 (304)
|.+||+|.|||.||+.+++.|.++. +.++++++|.|.
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~ 44 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADS 44 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 5689999999999999999987642 225899999874
No 49
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=96.96 E-value=0.0014 Score=61.47 Aligned_cols=95 Identities=22% Similarity=0.285 Sum_probs=58.0
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
+||+|+| +|++|+.+++.+.+. ++++++++-|..+.+.. .+|- +.+.+.. . .| +.++ .
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~--~~~elvav~d~~~~~~~----~~~~--~~~~~~~----~-----~g--v~~~--~ 60 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA--EGLQLVAAFERHGSSLQ----GTDA--GELAGIG----K-----VG--VPVT--D 60 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCcccc----CCCH--HHhcCcC----c-----CC--ceee--C
Confidence 6999999 799999999998764 46999998873121111 0110 1100000 0 01 2222 2
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVII 206 (304)
+++++ ...+|+|||+|......+.+...++.|.. ||+
T Consensus 61 d~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVi 97 (266)
T TIGR00036 61 DLEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVR-LVV 97 (266)
T ss_pred CHHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 34444 13579999999887777888888888864 444
No 50
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.89 E-value=0.002 Score=60.39 Aligned_cols=92 Identities=24% Similarity=0.300 Sum_probs=61.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
++|+|+|+|+||..+++.+.+-. .+++++++-|. +.++.-.+.+ + +.+..
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~-~~~e~v~v~D~-~~ek~~~~~~--~------------------~~~~~-------- 50 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGR-VDFELVAVYDR-DEEKAKELEA--S------------------VGRRC-------- 50 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCC-cceeEEEEecC-CHHHHHHHHh--h------------------cCCCc--------
Confidence 57999999999999999876422 45888888875 3332222221 1 11110
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISA 208 (304)
+..+|=....+|+++||.+..--++...+.|++|..-+|+|.
T Consensus 51 ~s~ide~~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SV 92 (255)
T COG1712 51 VSDIDELIAEVDLVVEAASPEAVREYVPKILKAGIDVIVMSV 92 (255)
T ss_pred cccHHHHhhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEec
Confidence 111111113779999999998888899999999998777764
No 51
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.89 E-value=0.0019 Score=62.88 Aligned_cols=88 Identities=20% Similarity=0.285 Sum_probs=59.6
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
++||+|+|+|.||+.+++++..+ +++++|+|-+..+.+.+. . .+.++...
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~--pd~ELVgV~dr~~~~~~~------~----------------------~~~v~~~~ 52 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQ--PDMELVGVFSRRGAETLD------T----------------------ETPVYAVA 52 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhC--CCcEEEEEEcCCcHHHHh------h----------------------cCCccccC
Confidence 58999999999999999988765 469999987752212111 0 00111111
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIIS 207 (304)
+.+. +. ..+|+|+-||+.....+.+...|++|.. ||.+
T Consensus 53 d~~e--~l-~~iDVViIctPs~th~~~~~~~L~aG~N-VV~s 90 (324)
T TIGR01921 53 DDEK--HL-DDVDVLILCMGSATDIPEQAPYFAQFAN-TVDS 90 (324)
T ss_pred CHHH--hc-cCCCEEEEcCCCccCHHHHHHHHHcCCC-EEEC
Confidence 2211 11 3689999999999999999999999974 4444
No 52
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.76 E-value=0.0038 Score=60.71 Aligned_cols=35 Identities=37% Similarity=0.685 Sum_probs=28.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC-----CCCCceEEEEeCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGR-----KDSPLDVVVVNDS 121 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r-----~~~~l~iVaInd~ 121 (304)
+||+|.|||.||+.+++.|.++ .+..+++|+|.|.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds 40 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS 40 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence 4899999999999999998874 2235789999874
No 53
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.74 E-value=0.004 Score=58.29 Aligned_cols=92 Identities=22% Similarity=0.248 Sum_probs=59.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
+||||+|+|+||+.+++.|.... ..+++++|-|. +.+....+.+ .+ + +.++ .+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~-~~~elv~v~d~-~~~~a~~~a~---~~-----------------~---~~~~--~~ 54 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGR-INAELYAFYDR-NLEKAENLAS---KT-----------------G---AKAC--LS 54 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCC-CCeEEEEEECC-CHHHHHHHHH---hc-----------------C---CeeE--CC
Confidence 68999999999999999887542 24788888775 2222221111 00 0 0111 23
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp 209 (304)
.+++- .++|+|++|++...-.+.+...+++|.. |++..+
T Consensus 55 ~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~-Vvv~s~ 93 (265)
T PRK13304 55 IDELV---EDVDLVVECASVNAVEEVVPKSLENGKD-VIIMSV 93 (265)
T ss_pred HHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCC-EEEEch
Confidence 33432 2689999999988777888888888864 444333
No 54
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.60 E-value=0.003 Score=61.34 Aligned_cols=37 Identities=32% Similarity=0.577 Sum_probs=29.7
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCC-------CCCceEEEEeCC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS 121 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~-------~~~l~iVaInd~ 121 (304)
|+++|+|.|||-||+.++++|.++. +-++++++|.|.
T Consensus 1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds 44 (336)
T PRK08374 1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDT 44 (336)
T ss_pred CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 4689999999999999999987642 224788989874
No 55
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.57 E-value=0.0048 Score=57.55 Aligned_cols=34 Identities=32% Similarity=0.597 Sum_probs=28.2
Q ss_pred cceEEEEcC-CHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 86 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 86 ~ikVaInGf-GrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
++||+|+|+ |+||+.+++.+.+. ++++++++-|.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~--~~~elvav~d~ 35 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA--EDLELVAAVDR 35 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEec
Confidence 379999996 99999999988754 35899998775
No 56
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=96.56 E-value=0.0057 Score=57.65 Aligned_cols=88 Identities=25% Similarity=0.222 Sum_probs=56.7
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
++||||+|+|+||+.+++.|... .+.+++++|-+. +.+...-+.+ -+|. . ..+ .
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~-~~~~el~aV~dr-~~~~a~~~a~---~~g~---~----------------~~~--~ 59 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRG-LPGLTLSAVAVR-DPQRHADFIW---GLRR---P----------------PPV--V 59 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhc-CCCeEEEEEECC-CHHHHHHHHH---hcCC---C----------------ccc--C
Confidence 58999999999999999988753 135788888775 2222111110 0110 0 010 2
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCC
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGak 202 (304)
+++++-. .+|+|++|++...-.+.....+++|..
T Consensus 60 ~~eell~---~~D~Vvi~tp~~~h~e~~~~aL~aGk~ 93 (271)
T PRK13302 60 PLDQLAT---HADIVVEAAPASVLRAIVEPVLAAGKK 93 (271)
T ss_pred CHHHHhc---CCCEEEECCCcHHHHHHHHHHHHcCCc
Confidence 3334422 579999999988888888888888863
No 57
>PRK06813 homoserine dehydrogenase; Validated
Probab=96.48 E-value=0.004 Score=61.09 Aligned_cols=36 Identities=31% Similarity=0.544 Sum_probs=28.4
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCC-------CCCceEEEEeC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~-------~~~l~iVaInd 120 (304)
|+++|+|.|||.||+.++++|.++. +-++++++|.+
T Consensus 1 ~~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~ 43 (346)
T PRK06813 1 MKIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLG 43 (346)
T ss_pred CeeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEe
Confidence 3589999999999999999987643 23567777765
No 58
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.46 E-value=0.0052 Score=60.15 Aligned_cols=37 Identities=27% Similarity=0.505 Sum_probs=29.1
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCC-------CCceEEEEeCC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKD-------SPLDVVVVNDS 121 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~-------~~l~iVaInd~ 121 (304)
|.+||+|.|||.||+.++|+|.++.. -.+++++|.+.
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~ 45 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADR 45 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEec
Confidence 56899999999999999999987631 34666666653
No 59
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.33 E-value=0.006 Score=60.99 Aligned_cols=93 Identities=27% Similarity=0.399 Sum_probs=55.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCC-------CCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEE
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKL 158 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~-------~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~ 158 (304)
++||||.|+|.||+.++++|.++. +.++++++|-+. +.+..- -+ . ..+
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~-~~~~~~-~~-------------~--------~~~-- 57 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR-DLEKDR-GV-------------D--------LPG-- 57 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC-Chhhcc-CC-------------C--------Ccc--
Confidence 589999999999999999886542 235788887664 111100 00 0 000
Q ss_pred EEEEecCCCCCCCCcccCccEEEcCCCCC-CChhhHHHHHHcCCCEEEEeC
Q 022023 159 IKVVSNRDPLQLPWAELGIDIVIEGTGVF-VDGPGAGKHIQAGAKKVIITA 208 (304)
Q Consensus 159 I~V~~~~dP~~idw~~~giDiVve~TG~f-~~~e~a~~Hl~aGakkVIISA 208 (304)
..++ .|++++ ..+..+|+|+||||.. ...+.....|++|. -|+|+
T Consensus 58 ~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk--hVVta 103 (426)
T PRK06349 58 ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGK--HVVTA 103 (426)
T ss_pred ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCC--eEEEc
Confidence 0111 223222 1234789999999864 33566778888885 55665
No 60
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.16 E-value=0.012 Score=47.18 Aligned_cols=94 Identities=32% Similarity=0.414 Sum_probs=63.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhcc-ccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLL-kyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
+||||+|+|.+|+..++.+.... +.+++++|-|+ +.+...... +|.. . ++ .
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~-~~~~v~~v~d~-~~~~~~~~~~~~~~-------~-----------------~~--~ 52 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS-PDFEVVAVCDP-DPERAEAFAEKYGI-------P-----------------VY--T 52 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT-TTEEEEEEECS-SHHHHHHHHHHTTS-------E-----------------EE--S
T ss_pred CEEEEECCcHHHHHHHHHHHhcC-CCcEEEEEEeC-CHHHHHHHHHHhcc-------c-----------------ch--h
Confidence 58999999999999998888752 56899999987 333222111 1111 0 11 1
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~ 210 (304)
+.+++ +.+.++|+|+-+|....-.+.+...+++|. -|++--|-
T Consensus 53 ~~~~l-l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP~ 95 (120)
T PF01408_consen 53 DLEEL-LADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKPL 95 (120)
T ss_dssp SHHHH-HHHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESSS
T ss_pred HHHHH-HHhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcCC
Confidence 12222 122378999999999998899999999998 67776663
No 61
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.86 E-value=0.015 Score=53.17 Aligned_cols=98 Identities=21% Similarity=0.274 Sum_probs=63.9
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEec
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (304)
...+|.|+|.|.+||.++..-+.. ..+++++++=|. +.+ .-|++-+. +.|..-
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~-~~~~~iv~~FDv-~~~----------~VG~~~~~---------------v~V~~~ 135 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSK-KNGMKIVAAFDV-DPD----------KVGTKIGD---------------VPVYDL 135 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchh-hcCceEEEEecC-CHH----------HhCcccCC---------------eeeech
Confidence 447999999999999887654432 246888888664 221 12333222 233222
Q ss_pred CCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC
Q 022023 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (304)
Q Consensus 165 ~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~ 210 (304)
.+.+.+ -.+.++|++|-|.......+-+..-.++|+|.++=-+|.
T Consensus 136 d~le~~-v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtPv 180 (211)
T COG2344 136 DDLEKF-VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTPV 180 (211)
T ss_pred HHHHHH-HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccce
Confidence 222222 123488999999999888888888899999886555665
No 62
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.60 E-value=0.13 Score=47.49 Aligned_cols=53 Identities=32% Similarity=0.387 Sum_probs=38.3
Q ss_pred CCCHHHHHHHhhccccccCCCCccccccCcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 57 DASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
+..+..+++.-+... + .+-+.++|+|.|||.||+.+++.|.+. ...+|+|.|.
T Consensus 11 g~Gv~~~~~~~~~~~-~--------~~l~~~~v~I~G~G~VG~~~a~~L~~~---g~~vv~v~D~ 63 (227)
T cd01076 11 GRGVAYATREALKKL-G--------IGLAGARVAIQGFGNVGSHAARFLHEA---GAKVVAVSDS 63 (227)
T ss_pred hHHHHHHHHHHHHhc-C--------CCccCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECC
Confidence 444566666555443 1 111457999999999999999999876 3899999885
No 63
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.58 E-value=0.019 Score=47.78 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=28.4
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 87 ikVaInGf-GrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
|||+|+|+ ||+||.+++.+.+. ++++++++-+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~--~~~~lv~~v~~ 34 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES--PGFELVGAVDR 34 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS--TTEEEEEEEET
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--CCcEEEEEEec
Confidence 68999997 99999999999885 35898888765
No 64
>PRK11579 putative oxidoreductase; Provisional
Probab=95.54 E-value=0.051 Score=52.20 Aligned_cols=92 Identities=23% Similarity=0.413 Sum_probs=59.1
Q ss_pred cceEEEEcCCHHHHH-HHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEec
Q 022023 86 KLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (304)
Q Consensus 86 ~ikVaInGfGrIGR~-vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (304)
++||||+|+|.||+. .++.+... +.+++++|.|. +.+.+. + .|. + ++++
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~--~~~~l~av~d~-~~~~~~-----~----~~~--------------~--~~~~-- 53 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGT--PGLELAAVSSS-DATKVK-----A----DWP--------------T--VTVV-- 53 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhC--CCCEEEEEECC-CHHHHH-----h----hCC--------------C--Ccee--
Confidence 589999999999985 46665543 35899999986 333221 0 010 0 0111
Q ss_pred CCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 022023 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (304)
Q Consensus 165 ~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp 209 (304)
.|.+++ ..+.++|+|+-||....-.+.+...+++|. -|++--|
T Consensus 54 ~~~~el-l~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP 96 (346)
T PRK11579 54 SEPQHL-FNDPNIDLIVIPTPNDTHFPLAKAALEAGK-HVVVDKP 96 (346)
T ss_pred CCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-eEEEeCC
Confidence 122222 112368999999999988899999999984 4666445
No 65
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.46 E-value=0.0063 Score=49.44 Aligned_cols=87 Identities=26% Similarity=0.354 Sum_probs=48.2
Q ss_pred cCCHHHHHHHHHHHhCCCC-CceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCCCCC-C
Q 022023 93 GFGRIGRNFLRCWHGRKDS-PLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQ-L 170 (304)
Q Consensus 93 GfGrIGR~vlR~l~~r~~~-~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~dP~~-i 170 (304)
|||.||+.+++.|.++... ++++++|-+.. . ++..+. ... ..+. .+. .+.++ +
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~--~----~~~~~~-~~~--------~~~~--------~~~--~~~~~~~ 55 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS--M----LISKDW-AAS--------FPDE--------AFT--TDLEELI 55 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS--E----EEETTH-HHH--------HTHS--------CEE--SSHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC--c----hhhhhh-hhh--------cccc--------ccc--CCHHHHh
Confidence 8999999999999876321 58888887651 0 111010 000 0000 000 11211 1
Q ss_pred CCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 022023 171 PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (304)
Q Consensus 171 dw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISA 208 (304)
.|. .+|+|||||+...-.+.....|+.|. =|||+
T Consensus 56 ~~~--~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~ 89 (117)
T PF03447_consen 56 DDP--DIDVVVECTSSEAVAEYYEKALERGK--HVVTA 89 (117)
T ss_dssp THT--T-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES
T ss_pred cCc--CCCEEEECCCchHHHHHHHHHHHCCC--eEEEE
Confidence 222 68999999998777788888888888 55655
No 66
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.17 E-value=0.21 Score=45.89 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=29.8
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
+.++|+|-|||.+|+.+++.|.+.. ..+|+|.|.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G---~~vV~vsD~ 55 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEG---GKVLAVSDP 55 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC---CEEEEEEcC
Confidence 4579999999999999999998763 789999986
No 67
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=95.13 E-value=0.1 Score=49.86 Aligned_cols=95 Identities=24% Similarity=0.283 Sum_probs=55.4
Q ss_pred cceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEec
Q 022023 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (304)
Q Consensus 86 ~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (304)
++||+|+| .||+||.+++++.+. +.+++++.-+..+- ...|.-.+++ +-++-.-+.|.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~--~~~~L~aa~~~~~~----------~~~g~d~ge~-------~g~~~~gv~v~-- 60 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA--PDLELVAAFDRPGS----------LSLGSDAGEL-------AGLGLLGVPVT-- 60 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC--CCceEEEEEecCCc----------cccccchhhh-------ccccccCceee--
Confidence 58999999 599999999998875 35777665442110 1112111111 11111112232
Q ss_pred CCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEE
Q 022023 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204 (304)
Q Consensus 165 ~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkV 204 (304)
.++. -.....|++||=|-...+.+.+...++.|..-|
T Consensus 61 ~~~~---~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lV 97 (266)
T COG0289 61 DDLL---LVKADADVLIDFTTPEATLENLEFALEHGKPLV 97 (266)
T ss_pred cchh---hcccCCCEEEECCCchhhHHHHHHHHHcCCCeE
Confidence 2221 123367899998888878888888888885443
No 68
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=94.87 E-value=0.082 Score=47.78 Aligned_cols=96 Identities=21% Similarity=0.229 Sum_probs=58.2
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
..+|+|+|.|.+|+.+++.+... ...++++++-|. +.+.. +.. ++|.++ ....
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~-~~g~~ivgv~D~-d~~~~---------------------~~~--i~g~~v--~~~~ 136 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFE-KRGFKIVAAFDV-DPEKI---------------------GTK--IGGIPV--YHID 136 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcc-cCCcEEEEEEEC-Chhhc---------------------CCE--eCCeEE--cCHH
Confidence 36899999999999998864322 245888887654 11110 011 233222 2112
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp 209 (304)
+..++ ..+.++|+|+.|++.....+-...-+++|.+-|+.-.|
T Consensus 137 ~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 137 ELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred HHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence 22222 13457999999999876666666677789877655445
No 69
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.27 E-value=0.071 Score=46.78 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=27.2
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
..+|||+|||+||+.+++.|.... ++|++.+..
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG---~~V~~~d~~ 68 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFG---MRVIGYDRS 68 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT----EEEEEESS
T ss_pred CCEEEEEEEcCCcCeEeeeeecCC---ceeEEeccc
Confidence 468999999999999999988653 788888764
No 70
>PLN02700 homoserine dehydrogenase family protein
Probab=94.13 E-value=0.08 Score=52.78 Aligned_cols=37 Identities=35% Similarity=0.480 Sum_probs=29.0
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCC------CCCceEEEEeCC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRK------DSPLDVVVVNDS 121 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~------~~~l~iVaInd~ 121 (304)
+.++|+|.|||-||+.+++.+..+. +-++++++|.+.
T Consensus 2 ~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s 44 (377)
T PLN02700 2 KKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDS 44 (377)
T ss_pred cEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECC
Confidence 3579999999999999999877543 224688888774
No 71
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=93.85 E-value=0.19 Score=50.37 Aligned_cols=111 Identities=19% Similarity=0.225 Sum_probs=63.7
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhcc-ccccccccCCceEEEecCC---eEE--ECCEEE
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDNE---TIS--VDGKLI 159 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLL-kyDS~hG~f~g~v~~~~~~---~L~--inGk~I 159 (304)
.+|+|.| +|-||+.-++++.... .+|+++++.-..+++.+..+. +|..- -+-+.++. .|. +.+..+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p-~~f~VvaLaa~~n~~~l~~q~~~f~p~------~v~i~~~~~~~~l~~~l~~~~~ 74 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNP-DRFRVVALSAGKNVELLAEQAREFRPK------YVVVADEEAAKELKEALAAAGI 74 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCc-cccEEEEEEcCCCHHHHHHHHHHhCCC------EEEEcCHHHHHHHHHhhccCCc
Confidence 5899999 9999999999876543 369999997332454444333 12221 11111100 000 112223
Q ss_pred EEEecCC-CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 022023 160 KVVSNRD-PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (304)
Q Consensus 160 ~V~~~~d-P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVII 206 (304)
+|+...+ ..++ -....+|+|+.+++.+...+-.-..+++|. +|.+
T Consensus 75 ~v~~G~~~~~~l-~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK-~VaL 120 (385)
T PRK05447 75 EVLAGEEGLCEL-AALPEADVVVAAIVGAAGLLPTLAAIRAGK-RIAL 120 (385)
T ss_pred eEEEChhHHHHH-hcCCCCCEEEEeCcCcccHHHHHHHHHCCC-cEEE
Confidence 4443222 1111 011268999999999988888888889984 4544
No 72
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=93.71 E-value=0.56 Score=44.42 Aligned_cols=105 Identities=20% Similarity=0.159 Sum_probs=59.2
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC---------CCccchhhccccccccccCCceEEEecCCeEEEC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSLLGTFKADVKIVDNETISVD 155 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~---------~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~in 155 (304)
+..+|+|-|||-+|+.+++.|.+.. ..+|+|.|. .+++.+..|++++..++.. +.-.. ..+.
T Consensus 37 ~g~~vaIqGfGnVG~~~a~~L~e~G---akvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~---v~~~~---~~~~ 107 (254)
T cd05313 37 KGKRVAISGSGNVAQYAAEKLLELG---AKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGR---VSEYA---KKYG 107 (254)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCc---HHHHh---hcCC
Confidence 3479999999999999999998753 799999984 2344444444444322210 00000 0011
Q ss_pred CEEEEEEecCCCCCCCCcccCccEEEcC-CCCCCChhhHHHHHHcCCCEEEE
Q 022023 156 GKLIKVVSNRDPLQLPWAELGIDIVIEG-TGVFVDGPGAGKHIQAGAKKVII 206 (304)
Q Consensus 156 Gk~I~V~~~~dP~~idw~~~giDiVve~-TG~f~~~e~a~~Hl~aGakkVII 206 (304)
+ -+.+ +++++ |. ..+||.+=| ++.-++.+.+.+-.+.+|| +|+
T Consensus 108 ~--a~~~---~~~~~-~~-~~~DIliPcAl~~~I~~~na~~i~~~~ak-~I~ 151 (254)
T cd05313 108 T--AKYF---EGKKP-WE-VPCDIAFPCATQNEVDAEDAKLLVKNGCK-YVA 151 (254)
T ss_pred C--CEEe---CCcch-hc-CCCcEEEeccccccCCHHHHHHHHHcCCE-EEE
Confidence 1 0111 23332 43 467877665 4556677777765555663 444
No 73
>PRK09414 glutamate dehydrogenase; Provisional
Probab=93.71 E-value=0.23 Score=50.53 Aligned_cols=102 Identities=19% Similarity=0.257 Sum_probs=60.4
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC-------CCccchhhcccccccc-ccCCceEEEecCCeEEECC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-------GGVKNASHLLKYDSLL-GTFKADVKIVDNETISVDG 156 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~-------~~~~~~ayLLkyDS~h-G~f~g~v~~~~~~~L~inG 156 (304)
+..+|+|-|||-+|+.+++.|.+.. ..||+|.|. .+++ ..-|++|--.+ |...+- .+. .+.
T Consensus 231 ~g~rVaIqGfGnVG~~~A~~L~~~G---akVVavsDs~G~iyn~~GLD-~~~L~~~k~~~~~~l~~~----~~~---~~~ 299 (445)
T PRK09414 231 EGKRVVVSGSGNVAIYAIEKAQQLG---AKVVTCSDSSGYVYDEEGID-LEKLKEIKEVRRGRISEY----AEE---FGA 299 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCceEECCCCCC-HHHHHHHHHhcCCchhhh----hhh---cCC
Confidence 4579999999999999999998753 899999883 1232 22244432211 211100 000 000
Q ss_pred EEEEEEecCCCCCCCCcccCccEEEcCC-CCCCChhhHHHHHHcCCCEEEE
Q 022023 157 KLIKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKVII 206 (304)
Q Consensus 157 k~I~V~~~~dP~~idw~~~giDiVve~T-G~f~~~e~a~~Hl~aGakkVII 206 (304)
+ .+ +++++ |. ..+||.|.|+ +.-++.+.+.++.+.+|| +|+
T Consensus 300 ~---~i---~~~~i-~~-~d~DVliPaAl~n~It~~~a~~i~~~~ak-iIv 341 (445)
T PRK09414 300 E---YL---EGGSP-WS-VPCDIALPCATQNELDEEDAKTLIANGVK-AVA 341 (445)
T ss_pred e---ec---CCccc-cc-cCCcEEEecCCcCcCCHHHHHHHHHcCCe-EEE
Confidence 1 11 23332 43 4789999997 455677888888776774 444
No 74
>PLN02477 glutamate dehydrogenase
Probab=93.57 E-value=0.56 Score=47.30 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=29.6
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
+..+|+|-|||.+|+.+++.|.+.. ..||+|.|.
T Consensus 205 ~g~~VaIqGfGnVG~~~A~~L~e~G---akVVaVsD~ 238 (410)
T PLN02477 205 AGQTFVIQGFGNVGSWAAQLIHEKG---GKIVAVSDI 238 (410)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcC---CEEEEEECC
Confidence 3468999999999999999998763 799999986
No 75
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=93.49 E-value=0.057 Score=58.53 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=28.9
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCC-------CCCceEEEEeC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~-------~~~l~iVaInd 120 (304)
+.++|+|.|||.||+.++++|.++. +-++++++|-+
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~ 499 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVD 499 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence 5689999999999999999987653 23577787765
No 76
>PLN02775 Probable dihydrodipicolinate reductase
Probab=93.36 E-value=0.34 Score=46.75 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=28.4
Q ss_pred CcceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 85 ~~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
+.++|+||| .|++|+.+++.+.. . +|++|+.-|.
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~~-~--~~~Lv~~~~~ 44 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAVS-A--GLQLVPVSFT 44 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHhc-C--CCEEEEEecc
Confidence 568999999 89999999999876 3 4898887654
No 77
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=93.18 E-value=0.097 Score=56.78 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=28.6
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCC------CCCceEEEEeC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRK------DSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~------~~~l~iVaInd 120 (304)
+.++|+|.|||.||+.+++.|.++. +-++++++|.+
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~ 505 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIAN 505 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEc
Confidence 5689999999999999999987542 22467777765
No 78
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.08 E-value=0.28 Score=45.98 Aligned_cols=73 Identities=26% Similarity=0.301 Sum_probs=50.5
Q ss_pred CccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcccCCC-CCCceEecCCchhhhhhhHHHHHHh
Q 022023 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDH-EVANIVSNASCTTNCLAPFVKVMDE 254 (304)
Q Consensus 176 giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~~~~~-~~~~IISnaSCTTn~LaPvLKvL~d 254 (304)
++|+|||+|......+.+.+..++|..-+-+| |.. --|-+|+-+|-+.-.+ ..-+.|. |-..+-.|++....+
T Consensus 71 di~lvfdatsa~~h~~~a~~~ae~gi~~idlt-paa--igp~vvp~~n~~eh~~a~nvnmvt---cggqatipiv~avsr 144 (310)
T COG4569 71 DIDLVFDATSAGAHVKNAAALAEAGIRLIDLT-PAA--IGPYVVPVVNLEEHVDALNVNMVT---CGGQATIPIVAAVSR 144 (310)
T ss_pred CcceEEeccccchhhcchHhHHhcCCceeecc-hhc--cCCeeccccchHHhcCCCCcceEe---ecCcccchhhhhhhh
Confidence 68899999999999999999999999654444 431 1289999999875432 1134555 555555566555443
No 79
>PRK10206 putative oxidoreductase; Provisional
Probab=92.92 E-value=0.19 Score=48.68 Aligned_cols=95 Identities=20% Similarity=0.241 Sum_probs=57.3
Q ss_pred cceEEEEcCCHHHH-HHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEec
Q 022023 86 KLKVAINGFGRIGR-NFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (304)
Q Consensus 86 ~ikVaInGfGrIGR-~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (304)
++||||+|+|.|++ ..++.+... .+.+++++|.|. +.+.....-+|. + ++++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~-~~~~~l~av~d~-~~~~~~~~~~~~---------------------~--~~~~-- 53 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNR-KDSWHVAHIFRR-HAKPEEQAPIYS---------------------H--IHFT-- 53 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcC-CCCEEEEEEEcC-ChhHHHHHHhcC---------------------C--Cccc--
Confidence 37999999999885 345655433 235899999986 222111000111 0 0111
Q ss_pred CCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 022023 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (304)
Q Consensus 165 ~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp 209 (304)
.|.+++ ..+.++|+|+-||....-.+.+...+++| |-|++--|
T Consensus 54 ~~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~EKP 96 (344)
T PRK10206 54 SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKP 96 (344)
T ss_pred CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEEecC
Confidence 112221 11236899999999998889999999998 45666444
No 80
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=92.40 E-value=0.11 Score=51.68 Aligned_cols=35 Identities=20% Similarity=0.430 Sum_probs=29.1
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
.|+|||++|.|-.|+-++-....- +.+++|+|.|.
T Consensus 16 ~PiRVGlIGAG~mG~~ivtQi~~m--~Gm~vvaisd~ 50 (438)
T COG4091 16 KPIRVGLIGAGEMGTGIVTQIASM--PGMEVVAISDR 50 (438)
T ss_pred CceEEEEecccccchHHHHHHhhc--CCceEEEEecc
Confidence 679999999999999887665532 46999999997
No 81
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=92.33 E-value=0.92 Score=46.42 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=64.1
Q ss_pred cceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhcc-ccccccccCCceEEEecC-------CeEEECC
Q 022023 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDN-------ETISVDG 156 (304)
Q Consensus 86 ~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLL-kyDS~hG~f~g~v~~~~~-------~~L~inG 156 (304)
+.||+|.| +|-||...++++.+.. .+|+++++.-...++.++... +|..- -+.+.+. ..| +|
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~p-d~f~vvaLaag~Ni~lL~~q~~~f~p~------~v~v~d~~~~~~l~~~l--~~ 127 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAENP-DKFKVVALAAGSNVTLLADQVRKFKPK------LVAVRNESLVDELKEAL--AD 127 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhCc-cccEEEEEECCCCHHHHHHHHHHhCCC------EEEEcCHHHHHHHHHhh--cC
Confidence 46899999 7999999999887653 469998887665665555433 22221 1111010 011 11
Q ss_pred E--EEEEEecC-CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 022023 157 K--LIKVVSNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (304)
Q Consensus 157 k--~I~V~~~~-dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVII 206 (304)
. .++|+... +..++ -....+|+||.+.+.+....-.-..+++| |+|.+
T Consensus 128 ~~~~~~vl~G~egl~~l-a~~~evDiVV~AIvG~aGL~pTl~AIkaG-K~VAL 178 (454)
T PLN02696 128 LDDKPEIIPGEEGIVEV-ARHPEAVTVVTGIVGCAGLKPTVAAIEAG-KDIAL 178 (454)
T ss_pred CCCCcEEEECHHHHHHH-HcCCCCCEEEEeCccccchHHHHHHHHCC-CcEEE
Confidence 0 13344311 11111 01126899999998887777667788888 45544
No 82
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.32 E-value=0.25 Score=45.40 Aligned_cols=98 Identities=23% Similarity=0.267 Sum_probs=55.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccc--cccccccCCceEEEecCCeEEECCEEEEEEec
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK--YDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLk--yDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (304)
+++.|+|.|++|+.+++.|.+.. -++++|.+- .+....-++ +|. ..+..++....+..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g---~~Vv~Id~d--~~~~~~~~~~~~~~--------------~~v~gd~t~~~~L~- 60 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG---HNVVLIDRD--EERVEEFLADELDT--------------HVVIGDATDEDVLE- 60 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC---CceEEEEcC--HHHHHHHhhhhcce--------------EEEEecCCCHHHHH-
Confidence 57999999999999999998763 577777652 222111111 111 11112221112211
Q ss_pred CCCCCCCCcccCccEEEcCCCCCCChh-hHHHHHH-cCCCEEEEeCCC
Q 022023 165 RDPLQLPWAELGIDIVIEGTGVFVDGP-GAGKHIQ-AGAKKVIITAPA 210 (304)
Q Consensus 165 ~dP~~idw~~~giDiVve~TG~f~~~e-~a~~Hl~-aGakkVIISAp~ 210 (304)
+.. -..+|+++-+||.....- -+..+++ -|+++||..+..
T Consensus 61 ----~ag--i~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~ 102 (225)
T COG0569 61 ----EAG--IDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARN 102 (225)
T ss_pred ----hcC--CCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 111 125679999999854433 3334444 599998887754
No 83
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=92.13 E-value=0.19 Score=48.26 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=25.9
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..+|||+|||+|||.+++.+... .++|++.+.
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~f---gm~V~~~d~ 176 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAF---GAKVVYYST 176 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhc---CCEEEEECC
Confidence 46899999999999999988654 268777754
No 84
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=91.74 E-value=0.45 Score=44.74 Aligned_cols=108 Identities=19% Similarity=0.107 Sum_probs=58.5
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCC------C--CCceEEEEeCC-CCccchhhccccccccccCCceEEEecCCeEEEC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRK------D--SPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVD 155 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~------~--~~l~iVaInd~-~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~in 155 (304)
++.||.|+|.|-+|-.+++.|..-. + ..++++.+..- .+...+..-+-+++.-|+.+.++-.+ .--.++
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~--ri~~~~ 87 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVN--RLNQAM 87 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHH--HHHhcc
Confidence 4579999999999999999886421 1 12355444321 22222221122344567766554321 111123
Q ss_pred CEEEEEEecC-CCCCCCCcccCccEEEcCCCCCCChhhHHHHH
Q 022023 156 GKLIKVVSNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHI 197 (304)
Q Consensus 156 Gk~I~V~~~~-dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl 197 (304)
+-.|+.+.+. +++++ + .+.|+||+|+..+.++......+
T Consensus 88 ~~~i~a~~~~~~~~~~-~--~~~DiVi~avDn~~aR~~l~~~~ 127 (244)
T TIGR03736 88 GTDWTAHPERVERSST-L--HRPDIVIGCVDNRAARLAILRAF 127 (244)
T ss_pred CceEEEEEeeeCchhh-h--cCCCEEEECCCCHHHHHHHHHHH
Confidence 4333333221 22222 2 36899999999998876665444
No 85
>PRK06487 glycerate dehydrogenase; Provisional
Probab=91.57 E-value=0.24 Score=47.74 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=25.9
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..+|||+|||+||+.+++.+... .++|++.+.
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~f---gm~V~~~~~ 179 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAF---GMRVLIGQL 179 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhC---CCEEEEECC
Confidence 46899999999999999988654 268777764
No 86
>PRK14030 glutamate dehydrogenase; Provisional
Probab=91.42 E-value=1.4 Score=44.97 Aligned_cols=122 Identities=20% Similarity=0.200 Sum_probs=69.3
Q ss_pred CCCCHHHHHHHhhccccccCCCCccccccCcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC---------CCccc
Q 022023 56 RDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKN 126 (304)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~---------~~~~~ 126 (304)
++..+.-+++..+... +. . -+..+|+|-|||-+|..+++.|.+.. ..+|+|.|. .+++.
T Consensus 207 Tg~Gv~~~~~~~~~~~-g~---~-----l~g~~vaIQGfGnVG~~aA~~L~e~G---akvVavSD~~G~i~d~~Gld~~~ 274 (445)
T PRK14030 207 TGFGALYFVHQMLETK-GI---D-----IKGKTVAISGFGNVAWGAATKATELG---AKVVTISGPDGYIYDPDGISGEK 274 (445)
T ss_pred cHHHHHHHHHHHHHHc-CC---C-----cCCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCceEECCCCCCHHH
Confidence 4455666666555432 11 1 13468999999999999999998753 789998774 23444
Q ss_pred hhhccccccccccCCceEEEecCCeEEECCEEEEEEecCCCCCCCCcccCccEEEcC-CCCCCChhhHHHHHHcCCC
Q 022023 127 ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEG-TGVFVDGPGAGKHIQAGAK 202 (304)
Q Consensus 127 ~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~dP~~idw~~~giDiVve~-TG~f~~~e~a~~Hl~aGak 202 (304)
+.+|++|-..+|..-... . . .+.|- +.+ +++++ |. ..+||.+=| ++.-++.+.+.+-.+.+||
T Consensus 275 l~~l~~~k~~~~~~~~~~---~-~--~~~ga--~~i---~~~~~-~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak 338 (445)
T PRK14030 275 IDYMLELRASGNDIVAPY---A-E--KFPGS--TFF---AGKKP-WE-QKVDIALPCATQNELNGEDADKLIKNGVL 338 (445)
T ss_pred HHHHHHHHHhcCccHHHH---H-h--cCCCC--EEc---CCccc-ee-ccccEEeeccccccCCHHHHHHHHHcCCe
Confidence 566776543333210000 0 0 01121 111 22332 53 467877665 5666777777776666774
No 87
>PRK06932 glycerate dehydrogenase; Provisional
Probab=90.95 E-value=0.3 Score=47.10 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=24.8
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
..+|||+|||+|||.+++.+... .++|++.+
T Consensus 147 gktvgIiG~G~IG~~va~~l~~f---g~~V~~~~ 177 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQAL---GMKVLYAE 177 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcC---CCEEEEEC
Confidence 46899999999999999988643 26776664
No 88
>CHL00194 ycf39 Ycf39; Provisional
Probab=90.88 E-value=0.63 Score=43.75 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=25.3
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
|||.|.| +|.||+.+++.|.++. .+|+++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g---~~V~~l~R 32 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG---YQVRCLVR 32 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CeEEEEEc
Confidence 4799999 8999999999998763 67766653
No 89
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=90.46 E-value=0.36 Score=47.01 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=26.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..+|||+|||+||+.+++.|... .+++++.+-
T Consensus 142 gkTvGIiG~G~IG~~va~~l~af---gm~v~~~d~ 173 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAF---GMKVIGYDP 173 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC---CCeEEEECC
Confidence 46899999999999999888754 378777765
No 90
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=90.27 E-value=0.83 Score=42.84 Aligned_cols=97 Identities=26% Similarity=0.270 Sum_probs=59.3
Q ss_pred CcceEEEEcCCHHHH-HHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEe
Q 022023 85 AKLKVAINGFGRIGR-NFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (304)
Q Consensus 85 ~~ikVaInGfGrIGR-~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (304)
+++||||+|.|.|+. ..+..+.+... .+++++|-|. +.+.+..+. ..+|. . +.+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~-~~~~vav~d~-~~~~a~~~a---~~~~~---~----------------~~~- 56 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGG-GLELVAVVDR-DPERAEAFA---EEFGI---A----------------KAY- 56 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCC-ceEEEEEecC-CHHHHHHHH---HHcCC---C----------------ccc-
Confidence 568999999997775 57777765421 1799999876 333322221 11110 0 011
Q ss_pred cCCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 022023 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (304)
Q Consensus 164 ~~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp 209 (304)
.+.+++- .+..+|+|+-||....-.+.+...|++|. -|++--|
T Consensus 57 -~~~~~ll-~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hVl~EKP 99 (342)
T COG0673 57 -TDLEELL-ADPDIDAVYIATPNALHAELALAALEAGK-HVLCEKP 99 (342)
T ss_pred -CCHHHHh-cCCCCCEEEEcCCChhhHHHHHHHHhcCC-EEEEcCC
Confidence 1111110 11248999999999999999999999997 4566444
No 91
>PLN02928 oxidoreductase family protein
Probab=90.10 E-value=0.4 Score=46.91 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=26.4
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..+|||+|||+||+.+++.|... .++|++.+.
T Consensus 159 gktvGIiG~G~IG~~vA~~l~af---G~~V~~~dr 190 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPF---GVKLLATRR 190 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhC---CCEEEEECC
Confidence 46899999999999999998754 268887764
No 92
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=90.07 E-value=0.53 Score=36.33 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=29.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhcc
Q 022023 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL 131 (304)
Q Consensus 88 kVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLL 131 (304)
||+|.|+|.+|..+++.|.+....+-++..+.+. +.+.+.++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r-~~~~~~~~~ 43 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR-SPEKAAELA 43 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES-SHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC-cHHHHHHHH
Confidence 7999999999999999998763223566655333 445554443
No 93
>PRK06436 glycerate dehydrogenase; Provisional
Probab=89.89 E-value=0.44 Score=45.89 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=26.2
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..+|||+|+|+||+.+++.|... .+++++.+.
T Consensus 122 gktvgIiG~G~IG~~vA~~l~af---G~~V~~~~r 153 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAF---GMNIYAYTR 153 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC---CCEEEEECC
Confidence 46899999999999999987643 378888875
No 94
>PRK07574 formate dehydrogenase; Provisional
Probab=89.85 E-value=0.42 Score=47.66 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=25.9
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.++|||+|||+||+.++|.|... .+++++.+.
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~f---G~~V~~~dr 223 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPF---DVKLHYTDR 223 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC---CCEEEEECC
Confidence 36899999999999999998754 267777764
No 95
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=89.85 E-value=1.1 Score=41.14 Aligned_cols=30 Identities=13% Similarity=0.330 Sum_probs=23.3
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+|.|.| +|.||+.+++.|.++. .++.++..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g---~~V~~~~R 31 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS---VPFLVASR 31 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC---CcEEEEeC
Confidence 478999 8999999999998763 56555543
No 96
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=89.78 E-value=1.5 Score=41.71 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=25.7
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
|.+||+|+|.|.||..++..|.+.. .+|..+..
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G---~~V~~~~r 33 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAG---ADVTLIGR 33 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcC---CcEEEEec
Confidence 4578999999999999999987652 45555554
No 97
>PRK13243 glyoxylate reductase; Reviewed
Probab=89.72 E-value=0.45 Score=46.17 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=26.1
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..+|||+|+|+||+.+++.|.... ++|++.+.
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~G---~~V~~~d~ 181 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGFG---MRILYYSR 181 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC---CEEEEECC
Confidence 468999999999999999987542 67777754
No 98
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=89.59 E-value=0.46 Score=46.10 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=24.1
Q ss_pred cceEEEEcCCHHHHHHHHHHH-hCCCCCceEEEEe
Q 022023 86 KLKVAINGFGRIGRNFLRCWH-GRKDSPLDVVVVN 119 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~-~r~~~~l~iVaIn 119 (304)
..+|||+|||+|||.+++.+. .. .++|++.+
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~f---gm~V~~~~ 176 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGF---NMPILYNA 176 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcC---CCEEEEEC
Confidence 478999999999999999875 43 26766543
No 99
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=89.54 E-value=0.6 Score=40.20 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=24.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+|||++|+|.+|+.+++.|.... +++.+.|.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g---~~v~~~d~ 32 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAG---YEVTVYDR 32 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTT---TEEEEEES
T ss_pred CEEEEEchHHHHHHHHHHHHhcC---CeEEeecc
Confidence 68999999999999999998753 78776663
No 100
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=89.53 E-value=1.4 Score=40.61 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=25.8
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
|||||.| .|++|..++.-+..|. -++++|-.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG---HeVTAivR 32 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG---HEVTAIVR 32 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC---CeeEEEEe
Confidence 5899999 8999999998888774 57777754
No 101
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.42 E-value=0.49 Score=47.36 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=26.0
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..+|||+|||+||+.+++.+.... +++++.+.
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~fG---m~V~~~d~ 182 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESLG---MRVYFYDI 182 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEECC
Confidence 468999999999999999987542 68777653
No 102
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=89.20 E-value=0.58 Score=47.29 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=22.6
Q ss_pred CcceEEEEc-CCHHHHHHHHHHHhCC
Q 022023 85 AKLKVAING-FGRIGRNFLRCWHGRK 109 (304)
Q Consensus 85 ~~ikVaInG-fGrIGR~vlR~l~~r~ 109 (304)
.+.+|.|.| +|++||.+.+.|.+|.
T Consensus 78 ~~~~VlVvGatG~vG~~iv~~llkrg 103 (411)
T KOG1203|consen 78 KPTTVLVVGATGKVGRRIVKILLKRG 103 (411)
T ss_pred CCCeEEEecCCCchhHHHHHHHHHCC
Confidence 467899999 9999999999999885
No 103
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=89.02 E-value=1.6 Score=44.76 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=70.5
Q ss_pred cCCCCHHHHHHHhhccccccCCCCccccccCcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCC---------Ccc
Q 022023 55 ARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG---------GVK 125 (304)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~---------~~~ 125 (304)
.++-.+.-|+...+... + .. -+..+|+|-|||-+|...++.|.+.. -.+|+|.|.. |.+
T Consensus 215 ATG~Gv~~~~~~~l~~~-~---~~-----l~Gk~VaVqG~GnVg~~aa~~L~e~G---akVVavSD~~G~iy~~~Gld~~ 282 (454)
T PTZ00079 215 ATGYGLVYFVLEVLKKL-N---DS-----LEGKTVVVSGSGNVAQYAVEKLLQLG---AKVLTMSDSDGYIHEPNGFTKE 282 (454)
T ss_pred ccHHHHHHHHHHHHHHc-C---CC-----cCCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCCcEECCCCCCHH
Confidence 34555666666655442 1 11 13468999999999999999998753 6999999862 344
Q ss_pred chhhcccccccc-ccCCceEEEecCCeEEECCEEEEEEecCCCCCCCCcccCccEEEcC-CCCCCChhhHHHHHHcCCCE
Q 022023 126 NASHLLKYDSLL-GTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEG-TGVFVDGPGAGKHIQAGAKK 203 (304)
Q Consensus 126 ~~ayLLkyDS~h-G~f~g~v~~~~~~~L~inGk~I~V~~~~dP~~idw~~~giDiVve~-TG~f~~~e~a~~Hl~aGakk 203 (304)
.+.+|+++-..+ |. ++-..+. .-| .+.+ ++++ .|. ..+||.+=| ++.-++.+.+..-++.|||-
T Consensus 283 ~l~~l~~~k~~~~g~----i~~~~~~---~~~--a~~~---~~~~-~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~ 348 (454)
T PTZ00079 283 KLAYLMDLKNVKRGR----LKEYAKH---SST--AKYV---PGKK-PWE-VPCDIAFPCATQNEINLEDAKLLIKNGCKL 348 (454)
T ss_pred HHHHHHHHHhhcCCc----HHhhhhc---cCC--cEEe---CCcC-ccc-CCccEEEeccccccCCHHHHHHHHHcCCeE
Confidence 444444322111 21 1100000 001 0111 1222 364 578888766 56667888888776788853
No 104
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=88.74 E-value=0.62 Score=44.95 Aligned_cols=32 Identities=13% Similarity=0.230 Sum_probs=25.9
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..+|||+|||.||+.+++.|... .+++.+++.
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~af---G~~V~~~~~ 167 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTW---GFPLRCWSR 167 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeC
Confidence 36899999999999999998754 267777763
No 105
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=88.60 E-value=0.38 Score=42.88 Aligned_cols=96 Identities=21% Similarity=0.254 Sum_probs=52.7
Q ss_pred EEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCCC
Q 022023 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (304)
Q Consensus 89 VaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~dP 167 (304)
|.|.| +|.+|+.+++.|... .++|.++-...+ +..+.-|+. .| -.+ +.. ...|+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~---~~~V~~l~R~~~-~~~~~~l~~---~g-----------~~v------v~~-d~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA---GFSVRALVRDPS-SDRAQQLQA---LG-----------AEV------VEA-DYDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT---TGCEEEEESSSH-HHHHHHHHH---TT-----------TEE------EES--TT-H
T ss_pred CEEECCccHHHHHHHHHHHhC---CCCcEEEEeccc-hhhhhhhhc---cc-----------ceE------eec-ccCCH
Confidence 68999 899999999999984 377777654311 111111111 01 000 101 11233
Q ss_pred CCCCCcccCccEEEcCCCCCCChh------hHHHHHHcCCCEEEEeCC
Q 022023 168 LQLPWAELGIDIVIEGTGVFVDGP------GAGKHIQAGAKKVIITAP 209 (304)
Q Consensus 168 ~~idw~~~giDiVve~TG~f~~~e------~a~~Hl~aGakkVIISAp 209 (304)
+.+.=.=.|+|.||.+++.+...+ -+....++|+|.+|.|..
T Consensus 56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~ 103 (233)
T PF05368_consen 56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSF 103 (233)
T ss_dssp HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEE
T ss_pred HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEe
Confidence 333211238999999999763322 233445679999988653
No 106
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=88.34 E-value=1.2 Score=42.85 Aligned_cols=29 Identities=21% Similarity=0.520 Sum_probs=24.4
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEE
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaI 118 (304)
+||.||| .|++|+.+.+++.. .++++|+.
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~---~~~~Lv~~ 30 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA---AGLEIVPT 30 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc---CCCEEEee
Confidence 4799999 89999999999765 35898875
No 107
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=88.14 E-value=1.3 Score=36.52 Aligned_cols=82 Identities=21% Similarity=0.204 Sum_probs=52.5
Q ss_pred eEEEEc----CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEe
Q 022023 88 KVAING----FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (304)
Q Consensus 88 kVaInG----fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (304)
+|+|+| -+..|+.+++.|.++ .++++.||-. ++. +.|. +++
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~---G~~v~~Vnp~-----------~~~------------------i~G~--~~y- 46 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAA---GYEVYPVNPK-----------GGE------------------ILGI--KCY- 46 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHT---T-EEEEESTT-----------CSE------------------ETTE--E-B-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhC---CCEEEEECCC-----------ceE------------------ECcE--Eee-
Confidence 689999 599999999999884 2788889842 222 1221 122
Q ss_pred cCCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 022023 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (304)
Q Consensus 164 ~~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISA 208 (304)
.+.++++ ..+|+++-++..-...+......+.|++.|++..
T Consensus 47 -~sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~ 87 (116)
T PF13380_consen 47 -PSLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQP 87 (116)
T ss_dssp -SSGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-T
T ss_pred -ccccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 1222221 3689999999988888888888888999998854
No 108
>PLN00016 RNA-binding protein; Provisional
Probab=88.06 E-value=1.5 Score=42.38 Aligned_cols=33 Identities=24% Similarity=0.198 Sum_probs=26.8
Q ss_pred CcceEEEE----c-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 85 AKLKVAIN----G-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaIn----G-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+++||.|. | +|.||+.+++.|.++. .+|+++..
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G---~~V~~l~R 88 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAG---HEVTLFTR 88 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCC---CEEEEEec
Confidence 56789999 8 9999999999998753 57666654
No 109
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=88.01 E-value=2.3 Score=39.90 Aligned_cols=91 Identities=10% Similarity=0.083 Sum_probs=46.2
Q ss_pred cCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCc-ccCCCCCCceEecCCchhhhhhhHHHHHH
Q 022023 175 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNE-KDYDHEVANIVSNASCTTNCLAPFVKVMD 253 (304)
Q Consensus 175 ~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~-~~~~~~~~~IISnaSCTTn~LaPvLKvL~ 253 (304)
.++|+||||+|.-...+.+-..++.|.+=|++..+. + .. .+|- ..+... ..++....++..-+..+++.+.
T Consensus 199 ~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~-~-~~-----~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~l~~ 270 (308)
T TIGR01202 199 RDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYT-E-PV-----NFDFVPAFMKE-ARLRIAAEWQPGDLHAVRELIE 270 (308)
T ss_pred CCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecC-C-Cc-----ccccchhhhcc-eEEEEecccchhHHHHHHHHHH
Confidence 378999999997555455556666665333333332 1 11 1221 122222 4566555555555677777776
Q ss_pred hhcCceE-EEEEEEeeccCccc
Q 022023 254 EELGIVK-GAMTTTHSYTGDQV 274 (304)
Q Consensus 254 d~fGI~~-g~vTTvHa~T~dQ~ 274 (304)
+. .|.- -.+|...+...-+.
T Consensus 271 ~g-~i~~~~~it~~~~l~~~~~ 291 (308)
T TIGR01202 271 SG-ALSLDGLITHQRPASDAAE 291 (308)
T ss_pred cC-CCChhhccceeecHHHHHH
Confidence 42 2321 23444444444333
No 110
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=87.98 E-value=0.38 Score=46.77 Aligned_cols=95 Identities=32% Similarity=0.477 Sum_probs=51.4
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCCCc-eEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCCC
Q 022023 89 VAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (304)
Q Consensus 89 VaInGfGrIGR~vlR~l~~r~~~~l-~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~dP 167 (304)
|.|.|.|.+|+.+++.|.++. .+ ++++... +.+.+..+.+. ..+ ..+. .++ ....|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~--~~~~v~va~r--~~~~~~~~~~~--~~~---~~~~------------~~~-~d~~~~ 58 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG--PFEEVTVADR--NPEKAERLAEK--LLG---DRVE------------AVQ-VDVNDP 58 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT--CE-EEEEEES--SHHHHHHHHT----TT---TTEE------------EEE---TTTH
T ss_pred CEEEcCcHHHHHHHHHHhcCC--CCCcEEEEEC--CHHHHHHHHhh--ccc---ccee------------EEE-EecCCH
Confidence 689999999999999998763 34 5444433 34443333320 000 0111 011 112233
Q ss_pred CCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 022023 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (304)
Q Consensus 168 ~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIIS 207 (304)
+.+.=--.+.|+||.|.|.+....-+...+++|+ -.|+
T Consensus 59 ~~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~--~yvD 96 (386)
T PF03435_consen 59 ESLAELLRGCDVVINCAGPFFGEPVARACIEAGV--HYVD 96 (386)
T ss_dssp HHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT---EEEE
T ss_pred HHHHHHHhcCCEEEECCccchhHHHHHHHHHhCC--Ceec
Confidence 3222111366999999999977788888888898 4454
No 111
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=87.96 E-value=0.68 Score=45.17 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=25.0
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..+|||.|+||||+.++|.+... .++|+.-+.
T Consensus 146 gktvGIiG~GrIG~avA~r~~~F---gm~v~y~~~ 177 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGF---GMKVLYYDR 177 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhcC---CCEEEEECC
Confidence 46899999999999999998743 267655553
No 112
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=87.75 E-value=0.78 Score=44.57 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=25.5
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.++|||+|+|+||+.+++.|... .++|++.+.
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~---G~~V~~~d~ 177 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGF---GATITAYDA 177 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC---CCEEEEEeC
Confidence 35899999999999999998754 267766653
No 113
>PLN02306 hydroxypyruvate reductase
Probab=87.70 E-value=0.73 Score=45.98 Aligned_cols=31 Identities=26% Similarity=0.481 Sum_probs=24.5
Q ss_pred cceEEEEcCCHHHHHHHHHHH-hCCCCCceEEEEe
Q 022023 86 KLKVAINGFGRIGRNFLRCWH-GRKDSPLDVVVVN 119 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~-~r~~~~l~iVaIn 119 (304)
..+|||+|||+||+.+++.+. .. .++|++.+
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~f---Gm~V~~~d 196 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGF---KMNLIYYD 196 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC---CCEEEEEC
Confidence 468999999999999999874 32 36777665
No 114
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=87.62 E-value=0.75 Score=36.45 Aligned_cols=92 Identities=27% Similarity=0.318 Sum_probs=54.5
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
+.+|+|+|.|+.|+.++...+.. ..+.++++-|. | ..+. + -.++| |+|+.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~--~g~~i~~~~dv------------~--~~~~--------G--~~i~g--ipV~~-- 52 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSM--RGFGIVAVFDV------------D--PEKI--------G--KEIGG--IPVYG-- 52 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHH--HCECEEEEEEE------------C--TTTT--------T--SEETT--EEEES--
T ss_pred CCeEEEECCCCcHHHHHHhHHHH--cCCCCEEEEEc------------C--CCcc--------C--cEECC--EEeec--
Confidence 46899999999999887544433 23666555442 1 1110 1 11334 34441
Q ss_pred CCCCCC-CcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 022023 166 DPLQLP-WAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (304)
Q Consensus 166 dP~~id-w~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp 209 (304)
+.+++. +. ++|+.+-+.+.....+-+.+.+++|.|.++.-+|
T Consensus 53 ~~~~l~~~~--~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 53 SMDELEEFI--EIDIAIITVPAEAAQEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp SHHHHHHHC--TTSEEEEES-HHHHHHHHHHHHHTT-SEEEEESS
T ss_pred cHHHhhhhh--CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 111111 11 3899998988777777888888999999877555
No 115
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=87.53 E-value=2.7 Score=41.05 Aligned_cols=185 Identities=14% Similarity=0.093 Sum_probs=82.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC--CCccchhh--ccccc-cccccCCceEEEecCCeEEECC-EEE
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASH--LLKYD-SLLGTFKADVKIVDNETISVDG-KLI 159 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~--~~~~~~ay--LLkyD-S~hG~f~g~v~~~~~~~L~inG-k~I 159 (304)
..+|.|+|.|.+|..+++.|.... +.-+.|-|. .++..+.. |+..+ --.|+.+.... .+.--.+|- -.|
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aG---vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa--~~~l~~inp~v~i 98 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAG---IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAA--KEHLRKINSEVEI 98 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC---CCEEEEEcCCcccccccCccccccHHHccCCccHHHHH--HHHHHHHCCCcEE
Confidence 357999999999999999987542 433334443 12222211 11111 11121111000 000000111 112
Q ss_pred EEEec-CCCCCCCCcccCccEEEcCCCCCCChhhHHHHH-HcCCCEEEEeCCCCCCCCCeEEeccCc--ccCCCCCCceE
Q 022023 160 KVVSN-RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHI-QAGAKKVIITAPAKGADIPTYVVGVNE--KDYDHEVANIV 235 (304)
Q Consensus 160 ~V~~~-~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl-~aGakkVIISAp~k~~DiP~vV~GVN~--~~~~~~~~~II 235 (304)
..+.. -++++++---.+.|+||+||..+.++....... +.|.+-|....-+...-.++|.+|-.+ +.+-+. .. +
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~G~~~~~~P~~tpC~~Cl~~~-~p-~ 176 (338)
T PRK12475 99 VPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSYGVTYTIIPGKTPCLRCLMEH-VP-V 176 (338)
T ss_pred EEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEEECCCCCCCHHHhcCC-CC-C
Confidence 22211 122222211236899999999987765544433 347655433222211012344444321 111111 00 1
Q ss_pred ecCCchhh-------------hhhhHHHHHHhhcCceEEEEEEEeeccCcccccc
Q 022023 236 SNASCTTN-------------CLAPFVKVMDEELGIVKGAMTTTHSYTGDQVIRH 277 (304)
Q Consensus 236 SnaSCTTn-------------~LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ~l~D 277 (304)
...+|.+. +..-++|.|-....-..+.+.++-..+++...+.
T Consensus 177 ~~~~c~~~Gvl~p~v~~iaslqa~EalK~L~g~~~~l~~~Ll~~D~~~~~~~~~~ 231 (338)
T PRK12475 177 GGATCDTAGIIQPAVQIVVAYQVTEALKILVEDFEALRETFLSFDIWNNQNMSIK 231 (338)
T ss_pred CCCCCccCCcCchHHHHHHHHHHHHHHHHHhCCCCCCcCeEEEEECCCCeEEEEE
Confidence 11234331 2234677776554445567777776666655444
No 116
>PLN03139 formate dehydrogenase; Provisional
Probab=87.49 E-value=0.71 Score=46.13 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=25.5
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..+|||+|+|+||+.+++.|... .+++++.+.
T Consensus 199 gktVGIVG~G~IG~~vA~~L~af---G~~V~~~d~ 230 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPF---NCNLLYHDR 230 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHC---CCEEEEECC
Confidence 46899999999999999998753 367766653
No 117
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=87.26 E-value=0.82 Score=45.60 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHhhccccccCCCCccccccCcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 56 RDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
...++.+|+-..+-..... .+. .-...+|||+|+|.||+.+++.|... .+++++.+
T Consensus 91 na~aVAE~~~~~lL~l~r~-~g~----~L~gktvGIIG~G~IG~~vA~~l~a~---G~~V~~~d 146 (378)
T PRK15438 91 NAIAVVEYVFSSLLMLAER-DGF----SLHDRTVGIVGVGNVGRRLQARLEAL---GIKTLLCD 146 (378)
T ss_pred CchHHHHHHHHHHHHHhcc-CCC----CcCCCEEEEECcCHHHHHHHHHHHHC---CCEEEEEC
Confidence 3456777776655433111 111 11346899999999999999998754 27877665
No 118
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=86.78 E-value=0.54 Score=39.96 Aligned_cols=33 Identities=36% Similarity=0.511 Sum_probs=25.8
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..+||+|+|.|++|..|.++|.+.. .+|+.|-.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag---~~v~~v~s 41 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAG---HEVVGVYS 41 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTT---SEEEEESS
T ss_pred CccEEEEECCCHHHHHHHHHHHHCC---CeEEEEEe
Confidence 4589999999999999999998753 78777754
No 119
>PLN02256 arogenate dehydrogenase
Probab=86.59 E-value=1.5 Score=42.22 Aligned_cols=34 Identities=29% Similarity=0.504 Sum_probs=26.7
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
++++|+|+|+|.||..+++.|.+. ..++++++..
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~---G~~V~~~d~~ 68 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQ---GHTVLATSRS 68 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC---CCEEEEEECc
Confidence 346899999999999999998754 2577777643
No 120
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=85.88 E-value=5.5 Score=37.84 Aligned_cols=142 Identities=17% Similarity=0.174 Sum_probs=70.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC-CCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~-~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
-+|.|.|.|.||...+.++.... .+++++... .+.+.+. +++ + +|. +. + +-..-.+.
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G---~~vi~~~~~~~~~~~~~-~~~-~--~Ga---~~-v--------~~~~~~~~--- 231 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRG---FEVYVLNRRDPPDPKAD-IVE-E--LGA---TY-V--------NSSKTPVA--- 231 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEecCCCCHHHHH-HHH-H--cCC---EE-e--------cCCccchh---
Confidence 47999999999999887765542 467776531 1222222 221 0 111 11 1 10000000
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcccCCCCCCceEecCCchhhhh
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~~~~~~~~~IISnaSCTTn~L 245 (304)
+ .. .+ .++|+||||+|.....+.+-..++.|.+-|++..+..+...++-...++...+..+ ..|+..-.|+..-+
T Consensus 232 ~-~~-~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~-~~i~g~~~~~~~~~ 306 (355)
T cd08230 232 E-VK-LV--GEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGN-KALVGSVNANKRHF 306 (355)
T ss_pred h-hh-hc--CCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcC-cEEEEecCCchhhH
Confidence 0 00 11 37899999999654445556667765533333333321111110011122223233 56776666666667
Q ss_pred hhHHHHHHhh
Q 022023 246 APFVKVMDEE 255 (304)
Q Consensus 246 aPvLKvL~d~ 255 (304)
..+++.|.+.
T Consensus 307 ~~~~~~l~~~ 316 (355)
T cd08230 307 EQAVEDLAQW 316 (355)
T ss_pred HHHHHHHHhc
Confidence 7777777653
No 121
>PTZ00117 malate dehydrogenase; Provisional
Probab=85.81 E-value=4.2 Score=39.20 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.1
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r 108 (304)
...||+|.|.|.||..++..+..+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~ 27 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQK 27 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHC
Confidence 346999999999999998877654
No 122
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.48 E-value=1.3 Score=40.64 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=20.9
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r 108 (304)
|+++|+|+|+|.||..+++.|...
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~ 24 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLAS 24 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhC
Confidence 457899999999999999988764
No 123
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=85.41 E-value=2.5 Score=35.99 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.0
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCC
Q 022023 87 LKVAINGF-GRIGRNFLRCWHGRK 109 (304)
Q Consensus 87 ikVaInGf-GrIGR~vlR~l~~r~ 109 (304)
+||+|.|. |.||..++-.|..+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~ 24 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQG 24 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTT
T ss_pred CEEEEECCCChHHHHHHHHHHhCC
Confidence 58999998 999999998887653
No 124
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=85.28 E-value=0.97 Score=37.79 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=18.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhC
Q 022023 88 KVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 88 kVaInGfGrIGR~vlR~l~~r 108 (304)
||.|.|.|.+|-.+++.|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~ 21 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS 21 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC
Confidence 589999999999999998754
No 125
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=85.15 E-value=1.4 Score=39.66 Aligned_cols=29 Identities=21% Similarity=0.434 Sum_probs=24.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEE
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaI 118 (304)
++|+|.|||++|+.+++.|.+.. .+++++
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G---~~Vvv~ 57 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEG---AKLIVA 57 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEE
Confidence 68999999999999999998753 577744
No 126
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=84.69 E-value=1.4 Score=41.20 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=25.2
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
|.+||+|+|+|.+|..+++.|.... +++++.+
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~g---~~v~~~d 32 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKAG---YSLVVYD 32 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHCC---CeEEEEc
Confidence 3468999999999999999887642 5766554
No 127
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=84.14 E-value=1.4 Score=43.86 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=34.9
Q ss_pred CCCHHHHHHHhhccccccCCCCccccccCcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 57 DASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
..++.+|+-..+-.. ....+ ..-...+|||+|+|.||+.+++.|.... +++++.+
T Consensus 92 a~aVAE~v~~~lL~l-~r~~g----~~l~gktvGIIG~G~IG~~va~~l~a~G---~~V~~~D 146 (381)
T PRK00257 92 ARGVVDYVLGSLLTL-AEREG----VDLAERTYGVVGAGHVGGRLVRVLRGLG---WKVLVCD 146 (381)
T ss_pred hHHHHHHHHHHHHHH-hcccC----CCcCcCEEEEECCCHHHHHHHHHHHHCC---CEEEEEC
Confidence 345667765555433 11111 1113468999999999999999987642 6776664
No 128
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=84.03 E-value=1.4 Score=45.48 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=25.9
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..+|||+|||+||+.+++.|... .+++++.+.
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~ 169 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAF---GMKVLAYDP 169 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC---CCEEEEECC
Confidence 36899999999999999988754 268777753
No 129
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=83.67 E-value=1.4 Score=45.35 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=26.2
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..+|||+|||+||+.+++.|... .+++++.+.
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~ 171 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAF---GMKVIAYDP 171 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC---CCEEEEECC
Confidence 46899999999999999988754 268777764
No 130
>PRK08605 D-lactate dehydrogenase; Validated
Probab=83.26 E-value=1.6 Score=42.28 Aligned_cols=32 Identities=38% Similarity=0.479 Sum_probs=24.1
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
.++|+|+|+|+||+.+++.|... -.+++++.+
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~--~g~~V~~~d 177 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKG--YGSDVVAYD 177 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc--CCCEEEEEC
Confidence 46899999999999999988421 135766654
No 131
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=83.12 E-value=2.4 Score=33.65 Aligned_cols=29 Identities=41% Similarity=0.706 Sum_probs=23.5
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 89 VaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
|.|.|+|++|+.+++.|.++. .+++.|..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~---~~vvvid~ 29 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG---IDVVVIDR 29 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT---SEEEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCC---CEEEEEEC
Confidence 679999999999999998742 67888875
No 132
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=82.95 E-value=1.8 Score=42.80 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=26.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
.+|||+|+|.||+.+++.|... .+++++.++.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~---G~~ViV~~r~ 48 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDS---GVEVVVGVRP 48 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC---cCEEEEEECc
Confidence 5799999999999999998764 3787776653
No 133
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=82.94 E-value=1.7 Score=40.63 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=24.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+||+|+|.|.||..+++.|.++. .+|.+++.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g---~~V~~~d~ 31 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLG---HTVYGVSR 31 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCC---CEEEEEEC
Confidence 47999999999999999987652 57666653
No 134
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=82.47 E-value=6.7 Score=36.25 Aligned_cols=31 Identities=35% Similarity=0.415 Sum_probs=23.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+||+|+|.|.+|..++..|.+.. .++..+..
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g---~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG---HDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CeEEEEEC
Confidence 47999999999999998887542 45555543
No 135
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.46 E-value=7.1 Score=36.96 Aligned_cols=153 Identities=14% Similarity=0.124 Sum_probs=73.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC-CCccc----hhhccccccccccCCceEEEecCCeEEECCEEEEE
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKN----ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKV 161 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~-~~~~~----~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V 161 (304)
.||||+|.|.+|+.++..+... .++++.++-. ..++. +.-++..--..|...... .+..+ ..|++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~---G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~---~~~~~----~~l~~ 75 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA---GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERE---RDAAL----ARLRF 75 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC---CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhh---HHHHH----hCeEe
Confidence 3899999999999999887654 3676666532 11221 111110001112211100 00000 12233
Q ss_pred EecCCCCCCCCcccCccEEEcCCCCCCChhhH-----HHHH-HcCCCEEEEeCCCCC--------CCCC---eEEeccCc
Q 022023 162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGA-----GKHI-QAGAKKVIITAPAKG--------ADIP---TYVVGVNE 224 (304)
Q Consensus 162 ~~~~dP~~idw~~~giDiVve~TG~f~~~e~a-----~~Hl-~aGakkVIISAp~k~--------~DiP---~vV~GVN~ 224 (304)
..+.+.+ .++|+||||...-...+.. .++. ..|+ ++.|..+.- ...| +.+.=.|+
T Consensus 76 --~~~~~~~----~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la~~~~~~~r~~g~hf~~P 147 (286)
T PRK07819 76 --TTDLGDF----ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLAAATKRPGRVLGLHFFNP 147 (286)
T ss_pred --eCCHHHh----CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCCCccEEEEecCCC
Confidence 2344333 3889999997654433221 2233 3344 777654410 0112 12334443
Q ss_pred ccCCCCCCceEecCCchhhhhhhHHHHHHhhcCc
Q 022023 225 KDYDHEVANIVSNASCTTNCLAPFVKVMDEELGI 258 (304)
Q Consensus 225 ~~~~~~~~~IISnaSCTTn~LaPvLKvL~d~fGI 258 (304)
--+.+- -.||..+.+.-..+.-+...+.+.+|-
T Consensus 148 ~~~~~l-vElv~~~~T~~~~~~~~~~~~~~~lgk 180 (286)
T PRK07819 148 VPVLPL-VELVPTLVTSEATVARAEEFASDVLGK 180 (286)
T ss_pred cccCce-EEEeCCCCCCHHHHHHHHHHHHHhCCC
Confidence 333333 357777776666666666655655554
No 136
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=82.10 E-value=7.5 Score=39.81 Aligned_cols=88 Identities=20% Similarity=0.208 Sum_probs=56.1
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC-CCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEec
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~-~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (304)
.+||.|.|+|+-|+.++|.|.++. .++. ++|. ...+... . ..+.. ..|.+...
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G---~~v~-v~D~~~~~~~~~--~------------------~~~~~--~~i~~~~g 60 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG---AEVT-VSDDRPAPEGLA--A------------------QPLLL--EGIEVELG 60 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC---CeEE-EEcCCCCccchh--h------------------hhhhc--cCceeecC
Confidence 468999999999999999998763 4544 4442 1110000 0 00000 11223322
Q ss_pred CCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCC
Q 022023 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (304)
Q Consensus 165 ~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGak 202 (304)
+.+. .+|. ..|+||-+-|+..+.+...+..+.|++
T Consensus 61 ~~~~-~~~~--~~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 61 SHDD-EDLA--EFDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred ccch-hccc--cCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 3333 5565 789999999999999999999899984
No 137
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=81.88 E-value=2.6 Score=40.94 Aligned_cols=74 Identities=14% Similarity=0.111 Sum_probs=38.6
Q ss_pred cCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccc-CCCCCCceEecCC-chhhhhhhHHHHH
Q 022023 175 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKD-YDHEVANIVSNAS-CTTNCLAPFVKVM 252 (304)
Q Consensus 175 ~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~~-~~~~~~~IISnaS-CTTn~LaPvLKvL 252 (304)
.|+|+||||+|.....+.+-..++.|-.-+++.-++.+.+ ..+... +..+ ..|...-. -.......+++.|
T Consensus 237 ~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~------~~~~~~~~~ke-l~l~gs~~~~~~~~~~~~~~ll 309 (350)
T COG1063 237 RGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDI------PLPAGLVVSKE-LTLRGSLRPSGREDFERALDLL 309 (350)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCccC------ccCHHHHHhcc-cEEEeccCCCCcccHHHHHHHH
Confidence 4899999999965544556566665543444544543211 122221 2222 44555423 2234555577777
Q ss_pred Hhh
Q 022023 253 DEE 255 (304)
Q Consensus 253 ~d~ 255 (304)
.+.
T Consensus 310 ~~g 312 (350)
T COG1063 310 ASG 312 (350)
T ss_pred HcC
Confidence 653
No 138
>PLN02712 arogenate dehydrogenase
Probab=81.87 E-value=2.1 Score=45.69 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=27.2
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
.+++|+|+|+|+||+.+++.|.+.. ++|++++..
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G---~~V~~~dr~ 84 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQG---HTVLAHSRS 84 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCC---CEEEEEeCC
Confidence 4579999999999999999987652 677777653
No 139
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=81.76 E-value=4.2 Score=39.78 Aligned_cols=177 Identities=22% Similarity=0.248 Sum_probs=84.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCC-CceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDS-PLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~-~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
+||+|.|.|.||..++-.|..+... .+-++-|++. -++--+ -|-.|+. .+.+..+++....
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~-~~~G~a----~DL~~~~-------------~~~~~~~~i~~~~ 62 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEE-KAEGVA----LDLSHAA-------------APLGSDVKITGDG 62 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccc-cccchh----cchhhcc-------------hhccCceEEecCC
Confidence 4899999999999999888655422 3444444421 000000 1111211 1122222332212
Q ss_pred CCCCCCCcccCccEEEcCCCCCCC----hh-----------hHHHHHHc-CCC--EEEEeCCCCCCCCCeEEeccCcccC
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVD----GP-----------GAGKHIQA-GAK--KVIITAPAKGADIPTYVVGVNEKDY 227 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~----~e-----------~a~~Hl~a-Gak--kVIISAp~k~~DiP~vV~GVN~~~~ 227 (304)
+-+.+ .|.|+||-+.|.-+- +. ...+-+.. +-+ -+|+|.|- |+-+.+.=-+...
T Consensus 63 ~y~~~----~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv---D~~ty~~~k~sg~- 134 (313)
T COG0039 63 DYEDL----KGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV---DILTYIAMKFSGF- 134 (313)
T ss_pred Chhhh----cCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH---HHHHHHHHHhcCC-
Confidence 22223 278888888876642 11 11222222 321 23346675 4433322222122
Q ss_pred CCCCCceEecCCchhhhhhhHHHHHHhhcCceEEEEEEEeeccCccccccCCCCCCcccccccchhhhhhhh
Q 022023 228 DHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQVIRHTKMSTSLLERAPKIKLLLTDHV 299 (304)
Q Consensus 228 ~~~~~~IISnaSCTTn~LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ~l~D~~~~h~d~RraRa~~~~~~~~~ 299 (304)
+. .++|... |+-=-+.+-..|-++|++.- .-+|+|-=- .--|. .=..|+.+.-...-++|.+
T Consensus 135 -p~-~rvig~g--t~LDsaR~~~~lae~~~v~~---~~V~~~ViG-eHGdt--~vp~~S~a~v~G~pl~~~~ 196 (313)
T COG0039 135 -PK-NRVIGSG--TVLDSARFRTFLAEKLGVSP---KDVHAYVIG-EHGDT--MVPLWSQATVGGKPLEELL 196 (313)
T ss_pred -Cc-cceeccc--chHHHHHHHHHHHHHhCCCh---hHceeeEec-cCCCc--eEEeeeeeeECCEEHHHHh
Confidence 22 5666543 56667788889999999843 333333211 22222 1135666665555555543
No 140
>PRK14031 glutamate dehydrogenase; Provisional
Probab=81.52 E-value=6.2 Score=40.38 Aligned_cols=54 Identities=15% Similarity=0.055 Sum_probs=38.1
Q ss_pred cCCCCHHHHHHHhhccccccCCCCccccccCcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 55 ARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.++..+.-+++..+... +. . . +..+|+|-|||-+|...++.|.+.. -.||+|.|
T Consensus 206 aTg~Gv~~~~~~~~~~~-g~--~-l-----~g~rVaVQGfGNVG~~aA~~L~e~G---AkVVaVSD 259 (444)
T PRK14031 206 ATGYGNIYFLMEMLKTK-GT--D-L-----KGKVCLVSGSGNVAQYTAEKVLELG---GKVVTMSD 259 (444)
T ss_pred ccHHHHHHHHHHHHHhc-CC--C-c-----CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEC
Confidence 34445666666555432 11 1 1 3468999999999999999998753 69999998
No 141
>PRK06223 malate dehydrogenase; Reviewed
Probab=81.45 E-value=6.6 Score=37.03 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=22.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEE
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaI 118 (304)
+||+|.|.|.+|..++..+.... -. +++.+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~-~~-ev~L~ 32 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKE-LG-DVVLF 32 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-Ce-EEEEE
Confidence 69999999999999998877542 11 55554
No 142
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=81.25 E-value=3.6 Score=46.24 Aligned_cols=92 Identities=20% Similarity=0.202 Sum_probs=58.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCce------------EEEEeCCCCccchhhccc-cccccccCCceEEEecCCeE
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLD------------VVVVNDSGGVKNASHLLK-YDSLLGTFKADVKIVDNETI 152 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~------------iVaInd~~~~~~~ayLLk-yDS~hG~f~g~v~~~~~~~L 152 (304)
+.||+|.|.|+||+..++.|.+.. ..+ +|+|.|. +++.+..+.+ |.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~--~~~~~~~~~~~~~~~lV~VaD~-~~~~a~~la~~~~------------------ 627 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVK--TISYYGDDSEEPTDVHVIVASL-YLKDAKETVEGIE------------------ 627 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCc--CccccccccccccccEEEEECC-CHHHHHHHHHhcC------------------
Confidence 468999999999999999997643 233 6777776 3333222221 10
Q ss_pred EECCEEEEEEecCCCCCCC-CcccCccEEEcCCCCCCChhhHHHHHHcCCC
Q 022023 153 SVDGKLIKVVSNRDPLQLP-WAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (304)
Q Consensus 153 ~inGk~I~V~~~~dP~~id-w~~~giDiVve~TG~f~~~e~a~~Hl~aGak 202 (304)
+-+.+.+- ..|++++. +- .++|+||-|++.....+-+...+++|+.
T Consensus 628 --~~~~v~lD-v~D~e~L~~~v-~~~DaVIsalP~~~H~~VAkaAieaGkH 674 (1042)
T PLN02819 628 --NAEAVQLD-VSDSESLLKYV-SQVDVVISLLPASCHAVVAKACIELKKH 674 (1042)
T ss_pred --CCceEEee-cCCHHHHHHhh-cCCCEEEECCCchhhHHHHHHHHHcCCC
Confidence 00112221 12333332 21 2689999999999999999999999873
No 143
>PLN02712 arogenate dehydrogenase
Probab=81.21 E-value=2.1 Score=45.62 Aligned_cols=34 Identities=32% Similarity=0.488 Sum_probs=27.5
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
+++||+|+|+|.||+.+++.|.+.. .+|++++..
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G---~~V~~~dr~ 401 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQG---HTVLAYSRS 401 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCc---CEEEEEECC
Confidence 4589999999999999999987642 577777653
No 144
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=80.99 E-value=2.1 Score=41.79 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=27.9
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
|.++|.|+|||.+|+..+|.|..+ +.+++|+.-+
T Consensus 1 m~~~vvqyGtG~vGv~air~l~ak--pe~elvgawv 34 (350)
T COG3804 1 MSLRVVQYGTGSVGVAAIRGLLAK--PELELVGAWV 34 (350)
T ss_pred CCceeEEeccchHHHHHHHHHHcC--CCCceEEEEe
Confidence 568899999999999999999876 3478776654
No 145
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.61 E-value=10 Score=37.92 Aligned_cols=87 Identities=25% Similarity=0.272 Sum_probs=49.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
.+|.|.|.|.+|..+++.|.++. .+++++... +.+....+.++=..+ | |++.....
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G---~~V~~~d~~-~~~~~~~~~~~l~~~------------------g--v~~~~~~~ 72 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG---ARVTVVDDG-DDERHRALAAILEAL------------------G--ATVRLGPG 72 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeCC-chhhhHHHHHHHHHc------------------C--CEEEECCC
Confidence 58999999999999999988753 566555432 211111111100001 1 11111111
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCC
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGa 201 (304)
+. + ..++|+||.++|.--+.+......+.|.
T Consensus 73 ~~-~---~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi 103 (480)
T PRK01438 73 PT-L---PEDTDLVVTSPGWRPDAPLLAAAADAGI 103 (480)
T ss_pred cc-c---cCCCCEEEECCCcCCCCHHHHHHHHCCC
Confidence 21 1 1357999999998766666666556676
No 146
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=80.51 E-value=3.1 Score=37.50 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=25.5
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCce-EEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~-iVaInd 120 (304)
.+||+|.|.|++|+.+++.|.......++ ++++++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~ 39 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR 39 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC
Confidence 46899999999999999988764322344 555554
No 147
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=80.50 E-value=7.5 Score=38.33 Aligned_cols=47 Identities=30% Similarity=0.377 Sum_probs=36.5
Q ss_pred CcceEEEEc-CCHHHHHHHHHHHhCCCCCceEE-EEeCCCCccchhhccccc
Q 022023 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVV-VVNDSGGVKNASHLLKYD 134 (304)
Q Consensus 85 ~~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iV-aInd~~~~~~~ayLLkyD 134 (304)
+..+|-|-| .|-||.-+++.|++|. ..|. .|+++.+.++..||.+.+
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG---Y~V~gtVR~~~~~k~~~~L~~l~ 53 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG---YTVRGTVRDPEDEKKTEHLRKLE 53 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC---CEEEEEEcCcchhhhHHHHHhcc
Confidence 346899999 8999999999999874 4443 467777777777887765
No 148
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=80.34 E-value=3.1 Score=40.29 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=19.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r 108 (304)
.||+|.|.|.+|..++..+..+
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~ 28 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK 28 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 5899999999999998877654
No 149
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.91 E-value=2.9 Score=39.64 Aligned_cols=33 Identities=21% Similarity=0.142 Sum_probs=25.9
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.++||+|.|+|.+|+.+++.|.... .+|...+.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G---~~V~~~~r 35 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANG---HRVRVWSR 35 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 3468999999999999999997642 56666654
No 150
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=79.35 E-value=2.8 Score=39.61 Aligned_cols=31 Identities=26% Similarity=0.436 Sum_probs=25.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+||+|+|+|.+|..+++.|.+.. .++++.+.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g---~~v~v~dr 31 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGG---HEVVGYDR 31 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCC---CeEEEEEC
Confidence 47999999999999999998753 67766654
No 151
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=78.62 E-value=3 Score=39.73 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=25.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|+|.|+|+||+.+++.|.... .++.+++.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G---~~V~v~~R 182 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG---ARVFVGAR 182 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC---CEEEEEeC
Confidence 58999999999999999998653 57766665
No 152
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.33 E-value=1.3 Score=42.67 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r 108 (304)
.||+|.|.|.||..++-.|..+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~ 25 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK 25 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc
Confidence 5999999999999998877754
No 153
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=78.09 E-value=3.9 Score=38.99 Aligned_cols=23 Identities=13% Similarity=0.266 Sum_probs=20.1
Q ss_pred cceEEEEcCCHHHHHHHHHHHhC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r 108 (304)
..+|.|.|.|-+|-.+++.|...
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~ 52 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALART 52 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc
Confidence 35899999999999999998754
No 154
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=77.77 E-value=3.4 Score=39.52 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.3
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r 108 (304)
+.++|+|+|+|.||+.++|.|-++
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~ 25 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEA 25 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHc
Confidence 347899999999999999999775
No 155
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=77.50 E-value=4.7 Score=38.88 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.1
Q ss_pred cceEEEEcCCHHHHHHHHHHHhC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r 108 (304)
+.||+|.|.|.||..++-.|..+
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~ 28 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQ 28 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc
Confidence 46999999999999999887765
No 156
>PRK08507 prephenate dehydrogenase; Validated
Probab=77.33 E-value=3.9 Score=38.04 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=24.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
+||+|+|+|.+|..+++.|.+.. ...++++++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g-~~~~v~~~d 32 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKG-LISKVYGYD 32 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcC-CCCEEEEEc
Confidence 37999999999999999987642 224555554
No 157
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=77.12 E-value=3.6 Score=38.90 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=25.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
++|+|+|+|.+|..+++.|.+.. +++++.+.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g---~~v~v~dr 31 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDG---HEVVGYDV 31 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCC---CEEEEEEC
Confidence 37999999999999999988642 67776654
No 158
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=77.00 E-value=3.6 Score=42.46 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=24.9
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
..+|+|+|+|+|||.+++.|..+. .+|++++
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~G---a~ViV~e 284 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFG---ARVVVTE 284 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 468999999999999999987653 5766654
No 159
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=76.96 E-value=6.4 Score=36.59 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r 108 (304)
.+|.|.|.|-+|-.+++.|...
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~ 33 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARS 33 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHc
Confidence 5799999999999999998743
No 160
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=76.83 E-value=3.7 Score=38.90 Aligned_cols=31 Identities=29% Similarity=0.533 Sum_probs=25.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
|||+|+|+|++|..+++.|.+.. +++++.+.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g---~~V~~~dr 31 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRG---HDCVGYDH 31 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCC---CEEEEEEC
Confidence 47999999999999999988642 67776654
No 161
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=76.61 E-value=5.8 Score=39.93 Aligned_cols=98 Identities=22% Similarity=0.268 Sum_probs=57.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
+||.|.|.|.||+.+++-|..+.+ .+|...... .++.+-+. +++.++ ++ .+.++- .+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d--~~V~iAdRs--~~~~~~i~--~~~~~~----v~-----~~~vD~--------~d 58 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD--GEVTIADRS--KEKCARIA--ELIGGK----VE-----ALQVDA--------AD 58 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC--ceEEEEeCC--HHHHHHHH--hhcccc----ce-----eEEecc--------cC
Confidence 689999999999999998876542 565444432 22222221 222211 11 122211 12
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIIS 207 (304)
++.+.=--.+.|+||.|.+.|.+..-+...++.|+.-|-+|
T Consensus 59 ~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts 99 (389)
T COG1748 59 VDALVALIKDFDLVINAAPPFVDLTILKACIKTGVDYVDTS 99 (389)
T ss_pred hHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCCEEEcc
Confidence 21110000144999999999999998888999999654443
No 162
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=76.42 E-value=7.9 Score=37.23 Aligned_cols=31 Identities=23% Similarity=0.086 Sum_probs=23.3
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
-||-|+| +|++|..+++.+.+..+ + .+..||
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~-~-~v~~V~ 38 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGT-N-IVGGVT 38 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCC-C-EEEEEC
Confidence 4799999 89999999988876432 2 555566
No 163
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=75.64 E-value=15 Score=33.74 Aligned_cols=137 Identities=15% Similarity=0.185 Sum_probs=68.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCce-EEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~-iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
-+|.|+|.|.||...+.++-.+. .. ++++. . +.+.+..+.+ +|. + ..++.+.. ..
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G---~~~Vi~~~-~-~~~r~~~a~~----~Ga---~--------~~i~~~~~----~~ 177 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAG---AARVVAAD-P-SPDRRELALS----FGA---T--------ALAEPEVL----AE 177 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEEC-C-CHHHHHHHHH----cCC---c--------EecCchhh----HH
Confidence 47999999999998888765542 44 66663 2 2222222111 121 1 01111000 00
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccc-CCCCCCceEecCCchhhh
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKD-YDHEVANIVSNASCTTNC 244 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~~-~~~~~~~IISnaSCTTn~ 244 (304)
...++. ...++|+|||++|.-...+.+-..++.|.+-|++.....+ .|. .++... +..+ ..|+..-..+...
T Consensus 178 ~~~~~~-~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~--~~~---~i~~~~~~~~~-~~i~g~~~~~~~~ 250 (280)
T TIGR03366 178 RQGGLQ-NGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPG--GPV---ALDPEQVVRRW-LTIRGVHNYEPRH 250 (280)
T ss_pred HHHHHh-CCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCC--Cce---eeCHHHHHhCC-cEEEecCCCCHHH
Confidence 000010 1137899999999765555666777766543444322211 111 223222 2223 4566655555556
Q ss_pred hhhHHHHHHh
Q 022023 245 LAPFVKVMDE 254 (304)
Q Consensus 245 LaPvLKvL~d 254 (304)
+..+++.|.+
T Consensus 251 ~~~~~~~l~~ 260 (280)
T TIGR03366 251 LDQAVRFLAA 260 (280)
T ss_pred HHHHHHHHHh
Confidence 7777777775
No 164
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=75.56 E-value=4.2 Score=39.99 Aligned_cols=31 Identities=29% Similarity=0.549 Sum_probs=25.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
|+|.|.|+|++|+.+++.|.++. .++++|..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g---~~v~vid~ 31 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN---NDVTVIDT 31 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CcEEEEEC
Confidence 47999999999999999987653 67777754
No 165
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=75.38 E-value=4.7 Score=37.08 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r 108 (304)
+||+|+|+|+||+.+++.|...
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~ 22 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS 22 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC
Confidence 3799999999999999999864
No 166
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=75.30 E-value=3.6 Score=38.44 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=24.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 88 kVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
||+|+|+|.+|..+++.|.+.. ++|++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G---~~V~~~dr 30 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG---YQLHVTTI 30 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC---CeEEEEcC
Confidence 5899999999999999988653 67776654
No 167
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=75.15 E-value=2.6 Score=41.63 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.0
Q ss_pred CcceEEEEcCCHHHHHHHHHHHh
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHG 107 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~ 107 (304)
+..+|+|+|||+||..+++-|..
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~ 183 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKP 183 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhh
Confidence 45689999999999999988765
No 168
>PLN02688 pyrroline-5-carboxylate reductase
Probab=74.86 E-value=4.7 Score=36.97 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=25.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCC-CCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~-~~l~iVaInd 120 (304)
+||+++|+|.+|..+++.|.+... ...++++.++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~ 35 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADD 35 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeC
Confidence 579999999999999999986531 1226666634
No 169
>PLN02494 adenosylhomocysteinase
Probab=74.65 E-value=7.3 Score=40.26 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=24.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|+|.|+|.||+.+++.+.... .+|++++.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~G---a~VIV~e~ 285 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAG---ARVIVTEI 285 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 57999999999999999887542 57777653
No 170
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=74.59 E-value=5.3 Score=33.78 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=24.7
Q ss_pred EEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 89 VaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
|.|.| +|.||+.+++.|.++. .+|+++..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~---~~V~~~~R 30 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG---HEVTALVR 30 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEES
T ss_pred eEEECCCChHHHHHHHHHHHCC---CEEEEEec
Confidence 68999 8999999999999874 78777765
No 171
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=74.41 E-value=14 Score=36.33 Aligned_cols=84 Identities=24% Similarity=0.344 Sum_probs=49.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchh---hccccccccccCCceEEEecCCeEEECCEEEEEEec
Q 022023 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNAS---HLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (304)
Q Consensus 88 kVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~a---yLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (304)
||.|+|.|.+|+.++|.|.++. .+ |.+.|....+... .+++. -.| |+++..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G---~~-V~~sD~~~~~~~~~~~~~~~~--------------------~~g--i~~~~g 54 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG---AE-VTVTDLKPNEELEPSMGQLRL--------------------NEG--SVLHTG 54 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC---CE-EEEEeCCCCccchhHHHHHhh--------------------ccC--cEEEec
Confidence 5889999999999999998763 45 3455531111000 01110 011 222222
Q ss_pred CCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCC
Q 022023 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (304)
Q Consensus 165 ~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGa 201 (304)
.++++++ +.|+||-+.|+-.+.+......+.|.
T Consensus 55 ~~~~~~~----~~d~vv~sp~i~~~~p~~~~a~~~~i 87 (433)
T TIGR01087 55 LHLEDLN----NADLVVKSPGIPPDHPLVQAAAKRGI 87 (433)
T ss_pred CchHHhc----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 3344442 57899999999877776766666776
No 172
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=74.20 E-value=4.1 Score=39.74 Aligned_cols=62 Identities=19% Similarity=0.140 Sum_probs=39.3
Q ss_pred CccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC-CCCCCCCeEEeccCcccCCCCCCceEecCCchhh
Q 022023 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP-AKGADIPTYVVGVNEKDYDHEVANIVSNASCTTN 243 (304)
Q Consensus 176 giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp-~k~~DiP~vV~GVN~~~~~~~~~~IISnaSCTTn 243 (304)
.-|++|.....-...+-.++|++-|| +|+.+- .+ |+.+.|.-+|.=.+-+ -.+|+.++-.|-
T Consensus 230 ~e~i~v~vAs~~~g~~I~pq~lkpg~--~ivD~g~P~--dvd~~vk~~~~V~Ii~--GGlV~~s~~it~ 292 (351)
T COG5322 230 QEDILVWVASMPKGVEIFPQHLKPGC--LIVDGGYPK--DVDTSVKNVGGVRIIP--GGLVEHSLDITW 292 (351)
T ss_pred ccceEEEEeecCCCceechhhccCCe--EEEcCCcCc--ccccccccCCCeEEec--CccccCccccch
Confidence 34566665555556677799999999 889862 23 5667777776443333 256776665543
No 173
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=73.93 E-value=4.1 Score=42.67 Aligned_cols=32 Identities=34% Similarity=0.540 Sum_probs=27.0
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..+|.|.||||+|+.++|.|.++. .++++|..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g---~~vvvID~ 431 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANK---MRITVLER 431 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCC---CCEEEEEC
Confidence 457999999999999999998653 78888865
No 174
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=73.86 E-value=15 Score=34.79 Aligned_cols=90 Identities=17% Similarity=0.082 Sum_probs=47.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCc-eEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l-~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
-+|.|+|.|.||...+.++.... . +++++... .+.+..+.+ +|. +.. ++-+.-.+. +
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G---~~~Vi~~~~~--~~~~~~a~~----lGa---~~v--------i~~~~~~~~--~ 228 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLG---AAEIVCADVS--PRSLSLARE----MGA---DKL--------VNPQNDDLD--H 228 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEEeCC--HHHHHHHHH----cCC---cEE--------ecCCcccHH--H
Confidence 47999999999999888776542 4 45544322 233322222 221 111 111000000 0
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCC
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGak 202 (304)
-.. .. .++|+||||+|.-...+.+-..++.|-+
T Consensus 229 ~~~--~~--g~~D~vid~~G~~~~~~~~~~~l~~~G~ 261 (343)
T PRK09880 229 YKA--EK--GYFDVSFEVSGHPSSINTCLEVTRAKGV 261 (343)
T ss_pred Hhc--cC--CCCCEEEECCCCHHHHHHHHHHhhcCCE
Confidence 000 01 1589999999975445556677777653
No 175
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=73.70 E-value=4.6 Score=35.98 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=21.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
|||+|.|.|.+|-.++-++.+.. ++++++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G---~~V~g~D 30 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG---HQVIGVD 30 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT---SEEEEE-
T ss_pred CEEEEECCCcchHHHHHHHHhCC---CEEEEEe
Confidence 68999999999999888887653 7877774
No 176
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=73.12 E-value=14 Score=37.46 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=49.8
Q ss_pred cceEEEEcC----CHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEE
Q 022023 86 KLKVAINGF----GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKV 161 (304)
Q Consensus 86 ~ikVaInGf----GrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V 161 (304)
|.+|+|+|. |.+|+.+++.|.+... .-++..||-. ++.++|. ++
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf-~g~v~~Vnp~-----------~~~i~G~--------------------~~ 54 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGY-KGKIYPVNPK-----------AGEILGV--------------------KA 54 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCC-CCcEEEECCC-----------CCccCCc--------------------cc
Confidence 567999995 8899999999986531 1266667732 2222211 11
Q ss_pred EecCCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 022023 162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (304)
Q Consensus 162 ~~~~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVII 206 (304)
+ .+.++++ ..+|+++-++......+-..+..+.|++.+||
T Consensus 55 ~--~sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi 94 (447)
T TIGR02717 55 Y--PSVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVV 94 (447)
T ss_pred c--CCHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEE
Confidence 1 1222332 24677777777666666666666667776655
No 177
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.03 E-value=4.9 Score=39.95 Aligned_cols=41 Identities=34% Similarity=0.572 Sum_probs=34.1
Q ss_pred cCcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCcc
Q 022023 84 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVK 125 (304)
Q Consensus 84 ~~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~ 125 (304)
++.+|+||.|.|+|++-+++.|..-......||+|.++ +++
T Consensus 4 s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~-s~~ 44 (351)
T KOG2741|consen 4 SATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP-SLE 44 (351)
T ss_pred CceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc-cHH
Confidence 36789999999999999999998654446899999998 444
No 178
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=72.81 E-value=1.9 Score=39.29 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.1
Q ss_pred cceEEEEcCCHHHHHHHHHHHhC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r 108 (304)
..+|.|.|.|-+|-.++..|...
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~ 50 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARS 50 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc
Confidence 46899999999999999998754
No 179
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.79 E-value=7.9 Score=38.29 Aligned_cols=82 Identities=20% Similarity=0.332 Sum_probs=49.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
.+|.|+|+|.+|+.+++.|.++. .++++..+. .+ .+.+ .+. + + + .. ..+
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G---~~V~g~D~~--~~---~~~~----~~~----~---~-~---------~~--~~~ 52 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKG---VYVIGVDKS--LE---ALQS----CPY----I---H-E---------RY--LEN 52 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCC---CEEEEEeCC--cc---ccch----hHH----H---h-h---------hh--cCC
Confidence 37999999999999999998753 454444321 11 0000 000 0 0 0 00 012
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCC
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGak 202 (304)
++.+. .+.|+||-+.|...+.+.....++.|++
T Consensus 53 ~~~~~---~~~dlvV~s~gi~~~~~~l~~A~~~g~~ 85 (418)
T PRK00683 53 AEEFP---EQVDLVVRSPGIKKEHPWVQAAIASHIP 85 (418)
T ss_pred cHHHh---cCCCEEEECCCCCCCcHHHHHHHHCCCc
Confidence 22221 1468999999988777888888888984
No 180
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=72.65 E-value=4.2 Score=42.83 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=26.9
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..+|-|.||||+|+.++|.|.++. +++++|..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g---~~vvvID~ 431 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG---VKMTVLDH 431 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC---CCEEEEEC
Confidence 357999999999999999998753 78888864
No 181
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=72.43 E-value=2.6 Score=38.42 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r 108 (304)
.+|.|.|.|-+|-.+++.|...
T Consensus 22 ~~VlivG~GglGs~va~~La~~ 43 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAA 43 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHc
Confidence 5899999999999999998753
No 182
>PLN02602 lactate dehydrogenase
Probab=72.39 E-value=2.5 Score=41.65 Aligned_cols=149 Identities=15% Similarity=0.180 Sum_probs=73.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCc-eEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l-~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
.||+|.|.|.||-.++-.|..+. -. +++-+ |... + .+.=...|-.|.. .+.+. +.|....
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~--l~~el~Li-Di~~-~-~~~g~a~DL~~~~-------------~~~~~-~~i~~~~ 98 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQD--LADELALV-DVNP-D-KLRGEMLDLQHAA-------------AFLPR-TKILAST 98 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CCCEEEEE-eCCC-c-hhhHHHHHHHhhh-------------hcCCC-CEEEeCC
Confidence 69999999999999988777553 11 33333 2200 0 0000111322211 11121 2332222
Q ss_pred CCCCCCCcccCccEEEcCCCCCC----Chh------------hHHHHHHcC--CCEEEEeCCCCCCCCCeEEeccCcccC
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFV----DGP------------GAGKHIQAG--AKKVIITAPAKGADIPTYVVGVNEKDY 227 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~----~~e------------~a~~Hl~aG--akkVIISAp~k~~DiP~vV~GVN~~~~ 227 (304)
+.+.+ .+.|+||-+.|.-+ ++. .+..-.+.+ +.-+++|.|. |+-+.+. -....+
T Consensus 99 dy~~~----~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv---dv~t~~~-~k~sg~ 170 (350)
T PLN02602 99 DYAVT----AGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV---DVLTYVA-WKLSGF 170 (350)
T ss_pred CHHHh----CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch---HHHHHHH-HHHhCC
Confidence 33333 38899999988753 231 111222222 3233446664 3322111 000113
Q ss_pred CCCCCceEecCCchhhhhhhHHHHHHhhcCceEEEEEEE
Q 022023 228 DHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266 (304)
Q Consensus 228 ~~~~~~IISnaSCTTn~LaPvLKvL~d~fGI~~g~vTTv 266 (304)
.+ .+||.. ||.-=-+.+-..|.+++|+..-.+..+
T Consensus 171 p~--~rviG~--gt~LDs~R~r~~lA~~l~v~~~~V~~~ 205 (350)
T PLN02602 171 PA--NRVIGS--GTNLDSSRFRFLIADHLDVNAQDVQAY 205 (350)
T ss_pred CH--HHEEee--cchHHHHHHHHHHHHHhCCCccceeee
Confidence 22 467654 555556678888999999876655544
No 183
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=72.35 E-value=5.2 Score=37.45 Aligned_cols=33 Identities=39% Similarity=0.540 Sum_probs=28.2
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
..+|+|-|||-+|..+++.|.+.. ..+|+|.|.
T Consensus 32 g~~v~IqGfG~VG~~~a~~l~~~G---a~vv~vsD~ 64 (244)
T PF00208_consen 32 GKRVAIQGFGNVGSHAARFLAELG---AKVVAVSDS 64 (244)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT---EEEEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC---CEEEEEecC
Confidence 468999999999999999999863 688888663
No 184
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.87 E-value=15 Score=37.43 Aligned_cols=83 Identities=20% Similarity=0.209 Sum_probs=49.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
.+|.|.|+|++|+..++.|..+. .++++ .|. ..+....|.+ +| +. + +.+ ...
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G---~~v~~-~D~-~~~~~~~l~~----~g-----~~------~-~~~-------~~~ 64 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFG---ARPTV-CDD-DPDALRPHAE----RG-----VA------T-VST-------SDA 64 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCC---CEEEE-EcC-CHHHHHHHHh----CC-----CE------E-EcC-------cch
Confidence 47999999999999999887653 45444 553 1111211111 11 01 1 111 112
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCC
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGa 201 (304)
++.++ +.|+||.+.|+-.+.+......+.|+
T Consensus 65 ~~~l~----~~D~VV~SpGi~~~~p~~~~a~~~gi 95 (488)
T PRK03369 65 VQQIA----DYALVVTSPGFRPTAPVLAAAAAAGV 95 (488)
T ss_pred HhHhh----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 23332 56999999999888777777767776
No 185
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=71.74 E-value=43 Score=30.19 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=25.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|.|+|.|.+|...++.|.+.. -+|++|+.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g---a~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG---AHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CeEEEEcC
Confidence 58999999999999999888753 46666764
No 186
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=71.42 E-value=6.5 Score=37.44 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=23.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 88 kVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
||+|.|.|.+|+.++..|..+. ..-+++.++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g-~~~ei~l~D 32 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQG-IADELVLID 32 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcC-CCCEEEEEe
Confidence 7999999999999999888653 112555554
No 187
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=71.18 E-value=6.7 Score=37.08 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=23.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
.+|+|+|+|.||..+++.|.... ...++++++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g-~~~~V~~~d 38 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLG-LAGEIVGAD 38 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcC-CCcEEEEEE
Confidence 58999999999999999887542 112555554
No 188
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=70.99 E-value=11 Score=36.73 Aligned_cols=150 Identities=13% Similarity=0.120 Sum_probs=74.6
Q ss_pred cceEEEEcC-CHHHHHHHHHHHhCCC-C---CceEEEEeCC-CCccchhhccccccccccCCceEEEecCCeEEECCEEE
Q 022023 86 KLKVAINGF-GRIGRNFLRCWHGRKD-S---PLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLI 159 (304)
Q Consensus 86 ~ikVaInGf-GrIGR~vlR~l~~r~~-~---~l~iVaInd~-~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I 159 (304)
|.||+|.|. |.||-.++-.|..+.- + .++++-+ |. .+.+ .+.=...|-.|+.+ .+.. .+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~-Di~~~~~-~a~g~a~Dl~~~~~------------~~~~-~~ 66 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLL-ELPQALK-ALEGVAMELEDCAF------------PLLA-EI 66 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEE-ecCCccc-ccceeehhhhhccc------------cccC-ce
Confidence 579999997 9999999887775431 1 1133333 32 1111 01111223333221 1111 13
Q ss_pred EEEecCCCCCCCCcccCccEEEcCCCCCC----Chhh------------HHHHHHcCC-CEE--EEeCCCCCCCCCeEEe
Q 022023 160 KVVSNRDPLQLPWAELGIDIVIEGTGVFV----DGPG------------AGKHIQAGA-KKV--IITAPAKGADIPTYVV 220 (304)
Q Consensus 160 ~V~~~~dP~~idw~~~giDiVve~TG~f~----~~e~------------a~~Hl~aGa-kkV--IISAp~k~~DiP~vV~ 220 (304)
.|. ..+.+.+. +.|+||-+.|.-+ ++.. ...-.+.+- +-+ ++|.|- |+-+.+.
T Consensus 67 ~i~-~~~~~~~~----daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~ 138 (322)
T cd01338 67 VIT-DDPNVAFK----DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC---NTNALIA 138 (322)
T ss_pred EEe-cCcHHHhC----CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH---HHHHHHH
Confidence 333 34455553 8899999999854 2211 111111221 222 225553 3333222
Q ss_pred ccCcccCCCCCCceEecCCchhhhhhhHHHHHHhhcCceEEEE
Q 022023 221 GVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAM 263 (304)
Q Consensus 221 GVN~~~~~~~~~~IISnaSCTTn~LaPvLKvL~d~fGI~~g~v 263 (304)
-=....+.+ .+|+.. |.---+.+-..|.+++|+.--.+
T Consensus 139 ~k~sg~~p~--~~ViG~---t~LDs~Rl~~~la~~lgv~~~~v 176 (322)
T cd01338 139 MKNAPDIPP--DNFTAM---TRLDHNRAKSQLAKKAGVPVTDV 176 (322)
T ss_pred HHHcCCCCh--HheEEe---hHHHHHHHHHHHHHHhCcChhHe
Confidence 111112332 567776 56667888889999999865443
No 189
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=70.40 E-value=7.5 Score=34.32 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=22.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 88 kVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
||+|+|.|.+|+.++-.+... .++|+.+.-
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~---G~~V~l~d~ 30 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA---GYEVTLYDR 30 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT---TSEEEEE-S
T ss_pred CEEEEcCCHHHHHHHHHHHhC---CCcEEEEEC
Confidence 699999999999999887764 367665543
No 190
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=70.39 E-value=7.6 Score=36.59 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=25.4
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCC-CCceEEEEe
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVN 119 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~-~~l~iVaIn 119 (304)
|.+||+++|+|.+|..+++.|.++.. ...++.+.+
T Consensus 1 ~~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~ 36 (272)
T PRK12491 1 MNKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSD 36 (272)
T ss_pred CCCeEEEECccHHHHHHHHHHHHCCCCCCceEEEEC
Confidence 34689999999999999999986531 123555554
No 191
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=70.35 E-value=9.3 Score=34.48 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=25.2
Q ss_pred CcceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 85 ~~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
.+++|.|.| .|.||+.+++.|.++. .+|+++.
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g---~~V~~~~ 48 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKG---FAVKAGV 48 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCC---CEEEEEe
Confidence 346899999 8999999999998753 5665554
No 192
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=70.33 E-value=11 Score=36.06 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=23.5
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInGf-GrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
+||+|.|. |.+|..++..|.... ...+++.+.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g-~~~~v~lvd 33 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKED-VVKEINLIS 33 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCC-CCCEEEEEE
Confidence 58999995 999999999888753 112455553
No 193
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=70.18 E-value=21 Score=35.79 Aligned_cols=83 Identities=18% Similarity=0.230 Sum_probs=48.9
Q ss_pred ceEEEEcCCHHHHH-HHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 87 LKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 87 ikVaInGfGrIGR~-vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
.+|.|+|.|..|.. ++|.|.++. .+| .+.|....+....|-+ . | |.++...
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G---~~V-~~~D~~~~~~~~~l~~-----------------~-----g--i~~~~~~ 59 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLG---YKV-SGSDLKESAVTQRLLE-----------------L-----G--AIIFIGH 59 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCC---CeE-EEECCCCChHHHHHHH-----------------C-----C--CEEeCCC
Confidence 47999999999999 799988763 454 3455311111111110 0 1 2222223
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCC
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGa 201 (304)
+++.++ +.|+||-+.|+-.+.+......+.|+
T Consensus 60 ~~~~~~----~~d~vv~spgi~~~~~~~~~a~~~~i 91 (461)
T PRK00421 60 DAENIK----DADVVVYSSAIPDDNPELVAARELGI 91 (461)
T ss_pred CHHHCC----CCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 344442 57888888888777666666555665
No 194
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=70.02 E-value=28 Score=33.03 Aligned_cols=138 Identities=14% Similarity=0.182 Sum_probs=68.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
-+|.|.|.|.||..++.++.... .+++++.. +.+.+..+.+ +|. + ..++-+.... .+
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~G---~~vi~~~~--~~~~~~~~~~----~Ga---~--------~~i~~~~~~~---~~ 224 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMG---AAVVAIDI--DPEKLEMMKG----FGA---D--------LTLNPKDKSA---RE 224 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEcC--CHHHHHHHHH----hCC---c--------eEecCccccH---HH
Confidence 57999999999999888776542 46666643 2233332221 121 0 0111100000 00
Q ss_pred C-CCC-CC-cccCcc----EEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCc-ccCCCCCCceEecC
Q 022023 167 P-LQL-PW-AELGID----IVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNE-KDYDHEVANIVSNA 238 (304)
Q Consensus 167 P-~~i-dw-~~~giD----iVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~-~~~~~~~~~IISna 238 (304)
. +.+ .+ ...|+| +||||+|.-...+.+-..++.|.+-+++..+.. ..+ ++. +.+... ..++..-
T Consensus 225 ~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~--~~~-----~~~~~~~~~~-~~~~g~~ 296 (349)
T TIGR03201 225 VKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMA--KTE-----YRLSNLMAFH-ARALGNW 296 (349)
T ss_pred HHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCC--Ccc-----cCHHHHhhcc-cEEEEEe
Confidence 0 000 01 113554 899999976555556677777653333332321 111 111 112222 3466655
Q ss_pred CchhhhhhhHHHHHHhh
Q 022023 239 SCTTNCLAPFVKVMDEE 255 (304)
Q Consensus 239 SCTTn~LaPvLKvL~d~ 255 (304)
.|+...+..+++.|.+.
T Consensus 297 ~~~~~~~~~~~~~i~~g 313 (349)
T TIGR03201 297 GCPPDRYPAALDLVLDG 313 (349)
T ss_pred cCCHHHHHHHHHHHHcC
Confidence 56666677777777653
No 195
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=70.02 E-value=6.6 Score=39.68 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=24.7
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
..+|+|.|+|.||+.+++.+.... .+++++.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~G---a~ViV~d 225 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMG---ARVIVTE 225 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCc---CEEEEEe
Confidence 358999999999999999887542 5776664
No 196
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=69.99 E-value=17 Score=34.87 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=22.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
-+|.|.|.|.||...+.++-... .+++++.
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~G---a~vi~~~ 214 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAFG---LKVTVIS 214 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 47999999999998888765542 4666554
No 197
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=69.80 E-value=5.6 Score=40.99 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=27.0
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+-.|.|.|+|++|+.++|.|.++. .++++|..
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g---~~vvvId~ 448 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAG---IPLVVIET 448 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCC---CCEEEEEC
Confidence 457999999999999999998753 68888865
No 198
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=69.54 E-value=6.5 Score=38.60 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.0
Q ss_pred cceEEEEcCCHHHHHHHHHHHhC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r 108 (304)
..+|.|.|.|-+|-.++..|...
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~ 50 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGA 50 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc
Confidence 35899999999999999998754
No 199
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=69.25 E-value=7.1 Score=37.09 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=23.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
+||+++|.|++|..+++.|.... +++.+.+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G---~~v~v~~ 30 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAG---HQLHVTT 30 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC---CeEEEEe
Confidence 37999999999999999998653 5665554
No 200
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=69.17 E-value=5 Score=40.18 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=22.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEE
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaI 118 (304)
..+||.||||||+++++++... .+.+|.-
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~---gm~vI~~ 175 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAM---GMHVIGY 175 (406)
T ss_pred cEEEEeecccchHHHHHHHHhc---CceEEee
Confidence 5699999999999999988653 2454443
No 201
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=69.03 E-value=6.4 Score=38.94 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=25.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
|||+|+|.|.+|..++..|.+.. .+|++++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G---~~V~~~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG---HEVTGVDI 31 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC---CeEEEEEC
Confidence 47999999999999999998653 57777653
No 202
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=68.76 E-value=3 Score=40.20 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=18.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhC
Q 022023 88 KVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 88 kVaInGfGrIGR~vlR~l~~r 108 (304)
||+|+|.|.||-.++..|..+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~ 21 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL 21 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc
Confidence 799999999999998887765
No 203
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=68.67 E-value=8 Score=33.16 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=31.9
Q ss_pred EEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhcc
Q 022023 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL 131 (304)
Q Consensus 89 VaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLL 131 (304)
|+|.| +|-||++.++.+-+.+ ++|+++++.-..+.+.+..+.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~-d~f~v~~Lsa~~n~~~L~~q~ 43 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHP-DKFEVVALSAGSNIEKLAEQA 43 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCT-TTEEEEEEEESSTHHHHHHHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCC-CceEEEEEEcCCCHHHHHHHH
Confidence 68999 9999999999887654 579998887654555554443
No 204
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=68.48 E-value=3.2 Score=40.57 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=23.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 88 kVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
||.|+|.|-+|-.+++.|.... +.=+.+-|.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aG---Vg~ItlvD~ 31 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWG---VRHITFVDS 31 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcC---CCeEEEECC
Confidence 6899999999999999997542 433344444
No 205
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=68.45 E-value=7.5 Score=38.20 Aligned_cols=31 Identities=35% Similarity=0.361 Sum_probs=24.5
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
..+|+|+|+|.+|+.+++.|... .+++++..
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~s---G~~Vvv~~ 47 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDS---GVDVVVGL 47 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHC---CCEEEEEE
Confidence 35799999999999999998764 26765544
No 206
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.24 E-value=29 Score=35.12 Aligned_cols=83 Identities=24% Similarity=0.282 Sum_probs=49.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEec-C
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN-R 165 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~-~ 165 (304)
.||.|.|+|..|+.+++.|..+. .++. +.|. .......++. . .| |+++.. .
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G---~~V~-~~D~-~~~~~~~~l~----------------~-----~g--i~~~~~~~ 67 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELG---CDVV-VADD-NETARHKLIE----------------V-----TG--VADISTAE 67 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC---CEEE-EECC-ChHHHHHHHH----------------h-----cC--cEEEeCCC
Confidence 57999999999999999998653 4443 4442 1111111110 0 01 122222 2
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCC
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGa 201 (304)
++++++ +.|+||-+.|+-.+........+.|.
T Consensus 68 ~~~~~~----~~d~vV~Spgi~~~~p~~~~a~~~gi 99 (473)
T PRK00141 68 ASDQLD----SFSLVVTSPGWRPDSPLLVDAQSQGL 99 (473)
T ss_pred chhHhc----CCCEEEeCCCCCCCCHHHHHHHHCCC
Confidence 233332 57899999999777776666666776
No 207
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=67.34 E-value=30 Score=35.28 Aligned_cols=34 Identities=35% Similarity=0.516 Sum_probs=28.6
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
...+|+|-|||-+|+.+++.|++. .-++|++.|.
T Consensus 206 ~G~rVaVQG~GNVg~~aa~~l~~~---GAkvva~sds 239 (411)
T COG0334 206 EGARVAVQGFGNVGQYAAEKLHEL---GAKVVAVSDS 239 (411)
T ss_pred CCCEEEEECccHHHHHHHHHHHHc---CCEEEEEEcC
Confidence 347899999999999999999764 2588899885
No 208
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.77 E-value=37 Score=34.36 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=49.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
.||+|.|+|+-|+..+|.|..+. .++ .+.|....+..... ..|.-.+ +.+....+
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g---~~v-~~~d~~~~~~~~~~-------------------~~l~~~~--~~~~~~~~ 63 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHL---PAQ-ALTLFCNAVEAREV-------------------GALADAA--LLVETEAS 63 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcC---CEE-EEEcCCCcccchHH-------------------HHHhhcC--EEEeCCCC
Confidence 47999999999999999998753 443 34553111100000 0010011 11222223
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCC
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGa 201 (304)
++.++ ++|+||-+.|+-.+.+......+.|.
T Consensus 64 ~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~~i 94 (468)
T PRK04690 64 AQRLA----AFDVVVKSPGISPYRPEALAAAARGT 94 (468)
T ss_pred hHHcc----CCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 33332 57999999999888777766666676
No 209
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=66.62 E-value=26 Score=37.12 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=24.6
Q ss_pred CcceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 85 ~~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
+...|.|-| .|.||+.+++.|.++. .+|+++.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G---~~Vval~ 111 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLG---FRVRAGV 111 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CeEEEEe
Confidence 345689999 8999999999998753 5665553
No 210
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=66.56 E-value=9.6 Score=35.64 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=24.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+||+|.|.|.+|..++..|.... .++.+++.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g---~~V~~~~r 32 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNG---HDVTLWAR 32 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEEC
Confidence 58999999999999999987642 45555543
No 211
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=66.26 E-value=9.4 Score=36.47 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=25.4
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..||.|.|+|++|+.+++.|.... .++.+++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~G---a~V~v~~r 183 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALG---ANVTVGAR 183 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC---CEEEEEEC
Confidence 468999999999999999987642 46666654
No 212
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=66.11 E-value=8.8 Score=36.31 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=25.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.||+|+|.|.+|..+++.|.+.. .++.+.+.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G---~~V~v~d~ 32 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG---HQLQVFDV 32 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC---CeEEEEcC
Confidence 37999999999999999998653 57666654
No 213
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=65.75 E-value=14 Score=34.59 Aligned_cols=136 Identities=15% Similarity=0.150 Sum_probs=68.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCce-EEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~-iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
-+|.|+|.|.||..++..+.... .. ++++... .+....+.+ +|. + ..++-+.-.
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G---~~~vi~~~~~--~~~~~~~~~----~ga---~--------~~i~~~~~~----- 219 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALG---AEDVIGVDPS--PERLELAKA----LGA---D--------FVINSGQDD----- 219 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEECCC--HHHHHHHHH----hCC---C--------EEEcCCcch-----
Confidence 57999999999999888775542 45 6666432 222222211 121 0 011111000
Q ss_pred CCCCC-CCc-ccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcccCCCCCCceEecCCchhh
Q 022023 166 DPLQL-PWA-ELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTN 243 (304)
Q Consensus 166 dP~~i-dw~-~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~~~~~~~~~IISnaSCTTn 243 (304)
++.+ +.. ..++|+||||+|.....+.+-..++.|.+-+++..+. + +.+-. ....+..+ ..|+..-.++..
T Consensus 220 -~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~---~-~~~~~--~~~~~~~~-~~i~g~~~~~~~ 291 (339)
T cd08239 220 -VQEIRELTSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGG---E-LTIEV--SNDLIRKQ-RTLIGSWYFSVP 291 (339)
T ss_pred -HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCC---C-cccCc--HHHHHhCC-CEEEEEecCCHH
Confidence 0000 011 1378999999997655455667787766433343322 1 11111 01222222 355554444556
Q ss_pred hhhhHHHHHHhh
Q 022023 244 CLAPFVKVMDEE 255 (304)
Q Consensus 244 ~LaPvLKvL~d~ 255 (304)
.+.-+++.+.+.
T Consensus 292 ~~~~~~~~~~~g 303 (339)
T cd08239 292 DMEECAEFLARH 303 (339)
T ss_pred HHHHHHHHHHcC
Confidence 677777777653
No 214
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=65.70 E-value=20 Score=34.38 Aligned_cols=95 Identities=21% Similarity=0.183 Sum_probs=50.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCc-eEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l-~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
-+|.|+|.|.||...+.++..+. . .++++.. +.+++..+.+ +|. + ..++.+. .
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G---~~~Vi~~~~--~~~r~~~a~~----~Ga---~--------~~i~~~~------~ 246 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAG---ASQVVAVDL--NEDKLALARE----LGA---T--------ATVNAGD------P 246 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCcEEEEcC--CHHHHHHHHH----cCC---c--------eEeCCCc------h
Confidence 47999999999998887766542 4 4555532 2233332221 221 0 0111100 0
Q ss_pred CC-CCC-CCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 022023 166 DP-LQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (304)
Q Consensus 166 dP-~~i-dw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIIS 207 (304)
++ +.+ .....++|+||||+|.-...+.+-..++.|-+-|++.
T Consensus 247 ~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 247 NAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred hHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEc
Confidence 00 000 0111278999999997655566667777765434443
No 215
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=65.60 E-value=8.4 Score=37.99 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=24.4
Q ss_pred cceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 86 ~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
..+|+|+| +|.||+.+++.|.... .++.+++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G---~~V~~~d 129 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSG---YQVRILE 129 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCC---CeEEEeC
Confidence 37899999 9999999999998652 5554444
No 216
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.59 E-value=38 Score=33.65 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=49.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCC-ccchhhccccccccccCCceEEEecCCeEEECCEEEEEEe-cC
Q 022023 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGG-VKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS-NR 165 (304)
Q Consensus 88 kVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~-~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~-~~ 165 (304)
-|.|+|.|.+|+.++|.|.++. .++ .+.|... ...... |.-.+.-|.+.. ..
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G---~~v-~~~D~~~~~~~~~~----------------------l~~~~~g~~~~~~~~ 61 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQG---IPF-AVMDSREQPPGLDT----------------------LAREFPDVELRCGGF 61 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCC---CeE-EEEeCCCCchhHHH----------------------HHhhcCCcEEEeCCC
Confidence 4899999999999999998763 453 4455311 000011 100000123322 23
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCC
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGa 201 (304)
+++.++ +.|+||-+.|+-.+.+......+.|.
T Consensus 62 ~~~~~~----~~d~vV~sp~i~~~~p~~~~a~~~~i 93 (448)
T PRK03803 62 DCELLV----QASEIIISPGLALDTPALRAAAAMGI 93 (448)
T ss_pred ChHHhc----CCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 445443 56899999998877776666666676
No 217
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=65.47 E-value=9.9 Score=35.64 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=24.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.||+|+|.|.+|..+++.+.... +++++++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G---~~V~~~d~ 35 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAG---MDVWLLDS 35 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC---CeEEEEeC
Confidence 47999999999999999887642 67766653
No 218
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=65.33 E-value=21 Score=34.45 Aligned_cols=32 Identities=22% Similarity=0.134 Sum_probs=24.2
Q ss_pred cceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 86 ~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
+-||-|.| +|.+|+.+++.|.+.. .. ++..||
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g-~~-~v~pVn 40 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYG-TN-IVGGVT 40 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCC-CC-EEEEEC
Confidence 35899999 8999999999988643 22 444666
No 219
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.28 E-value=39 Score=33.30 Aligned_cols=85 Identities=28% Similarity=0.466 Sum_probs=49.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCC--cc-chhhccccccccccCCceEEEecCCeEEECCEEEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGG--VK-NASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~--~~-~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (304)
.+|.|.|.|++|+..++.|.++. .+|++ .|... .. ....|- + .| +++..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G---~~V~~-~d~~~~~~~~~~~~l~----------------~------~g--~~~~~ 57 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLG---ANVTV-NDGKPFSENPEAQELL----------------E------EG--IKVIC 57 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC---CEEEE-EcCCCccchhHHHHHH----------------h------cC--CEEEe
Confidence 46999999999999999998753 45444 44311 11 001110 0 01 11221
Q ss_pred cCCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCC
Q 022023 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (304)
Q Consensus 164 ~~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGa 201 (304)
..++.++. ..++|+||-+.|+-.+........+.|.
T Consensus 58 ~~~~~~~~--~~~~d~vV~s~gi~~~~~~~~~a~~~~i 93 (447)
T PRK02472 58 GSHPLELL--DEDFDLMVKNPGIPYTNPMVEKALEKGI 93 (447)
T ss_pred CCCCHHHh--cCcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 22333221 1147899999999888777777777776
No 220
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=64.89 E-value=30 Score=31.82 Aligned_cols=84 Identities=23% Similarity=0.204 Sum_probs=49.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
-+|.|+|.|.+|..+++++..+. .+++++.. ..+...++.+ +|. +.. ++- ++
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~G---~~vi~~~~--~~~~~~~~~~----~g~---~~~--------~~~--------~~ 208 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALTG---PDVVLVGR--HSEKLALARR----LGV---ETV--------LPD--------EA 208 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEcC--CHHHHHHHHH----cCC---cEE--------eCc--------cc
Confidence 57999999999999988876653 56666643 2333333332 221 111 010 00
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCC
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGak 202 (304)
+ .++ .++|+++||+|.-...+.+..+++.|.+
T Consensus 209 ~--~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~ 240 (319)
T cd08242 209 E--SEG--GGFDVVVEATGSPSGLELALRLVRPRGT 240 (319)
T ss_pred c--ccC--CCCCEEEECCCChHHHHHHHHHhhcCCE
Confidence 0 122 3789999999874445666677877653
No 221
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=64.89 E-value=11 Score=35.80 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.5
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r 108 (304)
+++||+|+|.|.||..++..|.+.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~ 27 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA 27 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC
Confidence 347899999999999999888754
No 222
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=64.55 E-value=10 Score=36.03 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=25.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
++|+|+|.|.+|..++..|..+. .+|++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G---~~V~v~d~ 33 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG---HEVRLWDA 33 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC---CeeEEEeC
Confidence 47999999999999999888653 57666654
No 223
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=64.33 E-value=12 Score=35.11 Aligned_cols=34 Identities=12% Similarity=0.317 Sum_probs=25.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCC-CCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~-~~~l~iVaInd 120 (304)
+||+|.|.|.+|..+++.|.+.. ....++++++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 57999999999999999987642 11246666654
No 224
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=64.14 E-value=12 Score=33.69 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=23.4
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
|||+|.| .|.+|..+++.|.+.. .+++.++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G---~~V~v~~ 31 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG---NKIIIGS 31 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC---CEEEEEE
Confidence 4799997 9999999999998652 4555554
No 225
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=64.06 E-value=79 Score=29.14 Aligned_cols=128 Identities=22% Similarity=0.189 Sum_probs=67.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
-+|.|.|.|.+|..+++++..+. ++++++.+.. +....+-+ +|. + ..++. +.
T Consensus 169 ~~vlV~g~g~vg~~~~~la~~~g---~~v~~~~~~~--~~~~~~~~----~g~---~--------~~~~~--------~~ 220 (329)
T cd08298 169 QRLGLYGFGASAHLALQIARYQG---AEVFAFTRSG--EHQELARE----LGA---D--------WAGDS--------DD 220 (329)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CeEEEEcCCh--HHHHHHHH----hCC---c--------EEecc--------Cc
Confidence 46899999999999888766542 6777775531 22222211 111 0 00111 00
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcccCCCCCCceEecCCchhhhhh
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLA 246 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~~~~~~~~~IISnaSCTTn~La 246 (304)
+ .+.++|++++++|.....+.+.++++.|..-|++. .... . +++++...+... ..|.....-....+.
T Consensus 221 ~-----~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g-~~~~-~----~~~~~~~~~~~~-~~i~~~~~~~~~~~~ 288 (329)
T cd08298 221 L-----PPEPLDAAIIFAPVGALVPAALRAVKKGGRVVLAG-IHMS-D----IPAFDYELLWGE-KTIRSVANLTRQDGE 288 (329)
T ss_pred c-----CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEEEEc-CCCC-C----CCccchhhhhCc-eEEEEecCCCHHHHH
Confidence 0 12378999999887767778888888766333322 1111 1 123333322222 345554444455666
Q ss_pred hHHHHHHh
Q 022023 247 PFVKVMDE 254 (304)
Q Consensus 247 PvLKvL~d 254 (304)
.+++.+.+
T Consensus 289 ~~~~l~~~ 296 (329)
T cd08298 289 EFLKLAAE 296 (329)
T ss_pred HHHHHHHc
Confidence 66665544
No 226
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=63.97 E-value=12 Score=35.01 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=25.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCC-CCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~-~~l~iVaInd 120 (304)
+||+++|.|.+|..+++.|.+... ...++++.+.
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r 38 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNR 38 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 589999999999999999986520 1245555543
No 227
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=63.94 E-value=10 Score=36.78 Aligned_cols=31 Identities=29% Similarity=0.308 Sum_probs=24.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|+|+|+|.+|+.+++.|.... +++++..+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG---~~Viv~~~ 34 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSG---LNVIVGLR 34 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCC---CeEEEEEC
Confidence 57999999999999999998642 56554443
No 228
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=63.77 E-value=11 Score=35.35 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=23.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
.||+|+|.|.+|+.++..|.... .+|+.++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G---~~V~~~d 31 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG---FQTTLVD 31 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC---CcEEEEe
Confidence 37999999999999999887652 5666554
No 229
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=63.77 E-value=10 Score=38.56 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=23.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
.+|+|.|+|.||+.+++.|.... .+|++++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~G---a~ViV~d 242 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLG---ARVIVTE 242 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEc
Confidence 57999999999999999887642 4665554
No 230
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.23 E-value=35 Score=34.57 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=23.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|.|.|+|..|+.++|.|..+. .++. +.|
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G---~~v~-~~D 37 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHG---ARLR-VAD 37 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCC---CEEE-EEc
Confidence 47999999999999999998753 4544 444
No 231
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.09 E-value=21 Score=35.85 Aligned_cols=87 Identities=21% Similarity=0.270 Sum_probs=49.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
.||+|.|+|+.|+.+++.|..+. .++ .+.|..+......+++ .|.-.| +.++...+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G---~~V-~~~D~~~~~~~~~~~~------------------~l~~~g--i~~~~~~~ 70 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLG---AKV-TAFDKKSEEELGEVSN------------------ELKELG--VKLVLGEN 70 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC---CEE-EEECCCCCccchHHHH------------------HHHhCC--CEEEeCCC
Confidence 47999999999999999988653 443 3444311100000000 011112 12221121
Q ss_pred -CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCC
Q 022023 167 -PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (304)
Q Consensus 167 -P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGa 201 (304)
++++ .+.|+||-+.|.-.+.+......+.|+
T Consensus 71 ~~~~~----~~~dlVV~Spgi~~~~p~~~~a~~~~i 102 (458)
T PRK01710 71 YLDKL----DGFDVIFKTPSMRIDSPELVKAKEEGA 102 (458)
T ss_pred ChHHh----ccCCEEEECCCCCCCchHHHHHHHcCC
Confidence 2333 256889999888877777777777777
No 232
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=61.97 E-value=4.5 Score=36.56 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=23.9
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
..+|+|.|.|-+|..++..|.... +.-+.+-|.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~G---vg~i~lvD~ 53 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAG---IGKLILVDF 53 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcC---CCEEEEECC
Confidence 468999999999999999887532 533334444
No 233
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=61.76 E-value=13 Score=34.90 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=24.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.||+|+|.|.+|..++..|.... ++|+.++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G---~~V~l~d~ 34 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG---YDVTIVDV 34 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC---CeEEEEeC
Confidence 47999999999999999887652 57666653
No 234
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.76 E-value=41 Score=33.21 Aligned_cols=88 Identities=23% Similarity=0.317 Sum_probs=50.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
.+|.|.|-|++|..+++.|.++. .+|+++ |...-+.+..+++ .|.-.| ++++....
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G---~~V~~~-d~~~~~~~~~~~~------------------~l~~~~--~~~~~~~~ 61 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLG---AKVILT-DEKEEDQLKEALE------------------ELGELG--IELVLGEY 61 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEE-eCCchHHHHHHHH------------------HHHhcC--CEEEeCCc
Confidence 57999999999999999998763 455444 4311111111110 000001 12222222
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCC
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGa 201 (304)
++++ ..+.|+||-++|...+.+......+.|.
T Consensus 62 ~~~~---~~~~d~vv~~~g~~~~~~~~~~a~~~~i 93 (450)
T PRK14106 62 PEEF---LEGVDLVVVSPGVPLDSPPVVQAHKKGI 93 (450)
T ss_pred chhH---hhcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 2221 1267999999999888877776666676
No 235
>PRK07680 late competence protein ComER; Validated
Probab=61.48 E-value=14 Score=34.26 Aligned_cols=22 Identities=14% Similarity=0.443 Sum_probs=19.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r 108 (304)
++|+|+|.|.+|..+++.|.+.
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~ 22 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES 22 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC
Confidence 4799999999999999998764
No 236
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=61.24 E-value=14 Score=36.43 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=26.4
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+.+|.|.|+|++|+.+++.|.++. .++++|..
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~---~~v~vid~ 262 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEG---YSVKLIER 262 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CeEEEEEC
Confidence 468999999999999999987653 67777754
No 237
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=61.21 E-value=13 Score=35.37 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=25.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+||+|.|.|.+|..++..|.... .+|..++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G---~~V~~~~r 35 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKG---VPVRLWAR 35 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC---CeEEEEeC
Confidence 58999999999999999887642 56666665
No 238
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=61.16 E-value=5.8 Score=36.86 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r 108 (304)
.||.|.|.|-+|-.++..|...
T Consensus 25 ~~VlvvG~GglGs~va~~La~~ 46 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAA 46 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHc
Confidence 5799999999999999998753
No 239
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=60.69 E-value=44 Score=32.52 Aligned_cols=133 Identities=14% Similarity=0.084 Sum_probs=64.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
..|.|.|.|.||...+.++-.+. .+++++... +-+....+-+ +|. + -.+|.+.. ..
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~G---a~Vi~~~~~-~~~~~~~a~~----lGa---~--------~~i~~~~~-----~~ 235 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAFG---LRVTVISRS-SEKEREAIDR----LGA---D--------SFLVTTDS-----QK 235 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHcC---CeEEEEeCC-hHHhHHHHHh----CCC---c--------EEEcCcCH-----HH
Confidence 47899999999998888766542 466666432 1111111111 121 1 01111100 00
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcc-cCCCCCCceEecCCchhhhh
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEK-DYDHEVANIVSNASCTTNCL 245 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~-~~~~~~~~IISnaSCTTn~L 245 (304)
..+ .. .++|+||||+|.-.....+-..++.|-+-|.+..+.. +.+ ++.. .+... ..|...-.++...+
T Consensus 236 v~~--~~-~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~--~~~-----~~~~~~~~~~-~~i~g~~~~~~~~~ 304 (375)
T PLN02178 236 MKE--AV-GTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEK--PLD-----LPIFPLVLGR-KMVGGSQIGGMKET 304 (375)
T ss_pred HHH--hh-CCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCC--CCc-----cCHHHHHhCC-eEEEEeCccCHHHH
Confidence 000 11 1689999999975444555566666653344433322 111 1111 11122 34554444455666
Q ss_pred hhHHHHHHh
Q 022023 246 APFVKVMDE 254 (304)
Q Consensus 246 aPvLKvL~d 254 (304)
..+++.+.+
T Consensus 305 ~~~~~l~~~ 313 (375)
T PLN02178 305 QEMLEFCAK 313 (375)
T ss_pred HHHHHHHHh
Confidence 677777654
No 240
>PRK08818 prephenate dehydrogenase; Provisional
Probab=60.53 E-value=13 Score=36.96 Aligned_cols=31 Identities=32% Similarity=0.372 Sum_probs=23.8
Q ss_pred cceEEEEcC-CHHHHHHHHHHHhCCCCCceEEEE
Q 022023 86 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVV 118 (304)
Q Consensus 86 ~ikVaInGf-GrIGR~vlR~l~~r~~~~l~iVaI 118 (304)
..+|+|+|+ |.||+.++++|-++. ..+|+++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~--~~~V~g~ 35 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM--QLEVIGH 35 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC--CCEEEEE
Confidence 468999998 999999999987541 3555443
No 241
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=60.41 E-value=53 Score=31.17 Aligned_cols=32 Identities=16% Similarity=0.074 Sum_probs=20.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
-+|.|.|.|.||...+.++.... +.-+++++.
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~-g~~~vi~~~ 196 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIY-PESKLVVFG 196 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhc-CCCcEEEEe
Confidence 47999999999998776554211 113555554
No 242
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=60.39 E-value=7.7 Score=34.11 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=18.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhC
Q 022023 88 KVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 88 kVaInGfGrIGR~vlR~l~~r 108 (304)
||.|.|.|-+|-.++..|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~ 21 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS 21 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc
Confidence 589999999999999988754
No 243
>PLN02427 UDP-apiose/xylose synthase
Probab=60.32 E-value=16 Score=35.17 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=27.3
Q ss_pred CcceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+++||.|-| .|.||+.+++.|.++. ..+|+++..
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~--g~~V~~l~r 47 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTET--PHKVLALDV 47 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcC--CCEEEEEec
Confidence 457899999 8999999999998762 257777754
No 244
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.03 E-value=16 Score=34.46 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=24.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
.||+|+|.|.+|..++..|.... ++++.++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g---~~V~~~d 34 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKG---LQVVLID 34 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCC---CeEEEEE
Confidence 57999999999999999887542 5666664
No 245
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=59.70 E-value=4.4 Score=41.71 Aligned_cols=32 Identities=19% Similarity=0.124 Sum_probs=24.6
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..+|+|+|.|.+|-..+..|..+. .+++++..
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G---~~V~v~e~ 168 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMG---HAVTIFEA 168 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CeEEEEec
Confidence 468999999999998888776542 57666653
No 246
>PRK06545 prephenate dehydrogenase; Validated
Probab=59.09 E-value=13 Score=36.16 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhC
Q 022023 88 KVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 88 kVaInGfGrIGR~vlR~l~~r 108 (304)
+|+|+|+|.||..+++.|..+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~ 22 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAA 22 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhc
Confidence 699999999999999998764
No 247
>PRK05865 hypothetical protein; Provisional
Probab=59.01 E-value=33 Score=38.02 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=24.9
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
|||.|-| .|.||+.+++.|.++. .+++++..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G---~~Vv~l~R 32 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG---HEVVGIAR 32 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc---CEEEEEEC
Confidence 4799999 8999999999998753 57666653
No 248
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=58.92 E-value=15 Score=34.27 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=24.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
.||+|+|.|.+|..++..+.... .+++.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g---~~V~~~d 33 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG---YDVVMVD 33 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC---CceEEEe
Confidence 47999999999999999887652 5666664
No 249
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=57.96 E-value=12 Score=38.72 Aligned_cols=132 Identities=16% Similarity=0.261 Sum_probs=67.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhcccccccccc--C--CceEE-EecCCeEEECCEEEE
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGT--F--KADVK-IVDNETISVDGKLIK 160 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~--f--~g~v~-~~~~~~L~inGk~I~ 160 (304)
..+||++|+|.+|+.+++.|.++. +++.+-|.. .+...-+.+--...|. + ..++. +.+. |.--+..|.
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~G---~~V~V~NRt--~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~--l~~~dvIi~ 78 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEKG---FPISVYNRT--TSKVDETVERAKKEGNLPLYGFKDPEDFVLS--IQKPRSVII 78 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhCC---CeEEEECCC--HHHHHHHHHhhhhcCCcccccCCCHHHHHhc--CCCCCEEEE
Confidence 357999999999999999998753 788877763 2222222210000010 0 00000 0000 000011122
Q ss_pred EEecCCCCC--------CCCcccCccEEEcCCCCC--CChhhHHHHHHcCCCEEEEeCCCCCC-----CCCeEEeccCcc
Q 022023 161 VVSNRDPLQ--------LPWAELGIDIVIEGTGVF--VDGPGAGKHIQAGAKKVIITAPAKGA-----DIPTYVVGVNEK 225 (304)
Q Consensus 161 V~~~~dP~~--------idw~~~giDiVve~TG~f--~~~e~a~~Hl~aGakkVIISAp~k~~-----DiP~vV~GVN~~ 225 (304)
+. .+++. ++.-+.| |++||++-.+ .+.+.+....+.|+ -.|.+|-.+- .-|++++|=+.+
T Consensus 79 ~v--~~~~aV~~Vi~gl~~~l~~G-~iiID~sT~~~~~t~~~~~~l~~~Gi--~fldapVSGG~~gA~~G~~im~GG~~~ 153 (493)
T PLN02350 79 LV--KAGAPVDQTIKALSEYMEPG-DCIIDGGNEWYENTERRIKEAAEKGL--LYLGMGVSGGEEGARNGPSLMPGGSFE 153 (493)
T ss_pred EC--CCcHHHHHHHHHHHhhcCCC-CEEEECCCCCHHHHHHHHHHHHHcCC--eEEeCCCcCCHHHhcCCCeEEecCCHH
Confidence 22 22211 1222223 7999998775 33344444445688 4677763110 126899998888
Q ss_pred cCCC
Q 022023 226 DYDH 229 (304)
Q Consensus 226 ~~~~ 229 (304)
.|+.
T Consensus 154 a~~~ 157 (493)
T PLN02350 154 AYKN 157 (493)
T ss_pred HHHH
Confidence 7754
No 250
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=57.84 E-value=10 Score=35.18 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=20.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r 108 (304)
+||+|+|+|.+|..+++.|.+.
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~ 25 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS 25 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC
Confidence 5899999999999999999865
No 251
>PLN00106 malate dehydrogenase
Probab=57.38 E-value=24 Score=34.45 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.3
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhC
Q 022023 87 LKVAINGF-GRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInGf-GrIGR~vlR~l~~r 108 (304)
.||+|.|. |.||..++..|..+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~ 41 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMN 41 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC
Confidence 59999997 99999999988754
No 252
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=57.33 E-value=16 Score=37.28 Aligned_cols=32 Identities=28% Similarity=0.306 Sum_probs=25.1
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+||+|+|.|.||..++..|... .++|++.+.
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~---G~~V~v~D~ 35 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA---GIDVAVFDP 35 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC---CCeEEEEeC
Confidence 35899999999999999988764 267665543
No 253
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.18 E-value=74 Score=31.57 Aligned_cols=87 Identities=18% Similarity=0.258 Sum_probs=50.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
.+|.|.|.|.+|+.++|.|.++. ..+++.......+....| +.. ..| |.++....
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g---~~v~~~d~~~~~~~~~~l-----------------~~~---~~g--i~~~~g~~ 60 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNG---AEVAAYDAELKPERVAQI-----------------GKM---FDG--LVFYTGRL 60 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeCCCCchhHHHH-----------------hhc---cCC--cEEEeCCC
Confidence 47999999999999999998763 554443321111100010 000 001 22322222
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCC
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGa 201 (304)
++.+ + .+.|+||-+.|+..+.+......+.|.
T Consensus 61 ~~~~-~--~~~d~vv~spgi~~~~p~~~~a~~~~i 92 (445)
T PRK04308 61 KDAL-D--NGFDILALSPGISERQPDIEAFKQNGG 92 (445)
T ss_pred CHHH-H--hCCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 2221 1 257999999999888877777767776
No 254
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=56.86 E-value=16 Score=33.91 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=24.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
++++|.|+|.||.-+++.|... ..+|+..+.
T Consensus 2 ~~~~i~GtGniG~alA~~~a~a---g~eV~igs~ 32 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKA---GHEVIIGSS 32 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhC---CCeEEEecC
Confidence 6899999999999999988753 267666643
No 255
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=56.62 E-value=19 Score=33.72 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=24.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
.||+|+|.|.+|..++..|.... ++++.++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G---~~V~l~d 34 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG---YDVLLND 34 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CeEEEEe
Confidence 57999999999999999887642 6766654
No 256
>PLN02572 UDP-sulfoquinovose synthase
Probab=56.31 E-value=23 Score=35.55 Aligned_cols=32 Identities=28% Similarity=0.283 Sum_probs=26.2
Q ss_pred CcceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 85 ~~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
+.++|-|-| .|.||+.+++.|.++. .+|+++.
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G---~~V~~~d 78 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRG---YEVAIVD 78 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCC---CeEEEEe
Confidence 456899999 8999999999999763 5776664
No 257
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=55.92 E-value=19 Score=34.39 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=29.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCC-CCceEEEEeCCCCccchhhcc
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDSGGVKNASHLL 131 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~-~~l~iVaInd~~~~~~~ayLL 131 (304)
+||++.|+|.+|+.+++-|++... +..+|++.+. ..+.+.+|.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~--~~e~~~~l~ 45 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR--SEEKRAALA 45 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC--CHHHHHHHH
Confidence 589999999999999999987631 2246555554 344443333
No 258
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=55.56 E-value=17 Score=36.40 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=26.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+||+|+|.|.+|..++.+|.++. +++++++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G---~~V~~~D~ 34 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ---KQVIGVDI 34 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC---CEEEEEeC
Confidence 68999999999999999998753 67777754
No 259
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=55.38 E-value=14 Score=35.37 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=24.5
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..+|+|+|+|.||+.+++.|.... .-++++++.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g--~~~V~v~~r 210 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKG--VAEITIANR 210 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcC--CCEEEEEeC
Confidence 468999999999999999987642 124555553
No 260
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=55.36 E-value=20 Score=27.48 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.2
Q ss_pred cceEEEEcCCHHHHHHHHHHHhC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r 108 (304)
..+++|.|+|.+|+.+++.|.+.
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~ 45 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADE 45 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc
Confidence 35899999999999999998865
No 261
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=55.23 E-value=8 Score=35.93 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.0
Q ss_pred cceEEEEcCCHHHHHHHHHHHhC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r 108 (304)
..||.|.|.|-+|-.+++.|..-
T Consensus 32 ~~~VliiG~GglGs~va~~La~~ 54 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAA 54 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc
Confidence 35899999999999999998753
No 262
>PRK08655 prephenate dehydrogenase; Provisional
Probab=55.11 E-value=18 Score=36.53 Aligned_cols=30 Identities=30% Similarity=0.615 Sum_probs=23.6
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
|||+|+| +|.||+.+++.|.+.. .+++++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G---~~V~v~~ 31 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG---FEVIVTG 31 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC---CEEEEEE
Confidence 4799998 9999999999987642 5655554
No 263
>PLN02778 3,5-epimerase/4-reductase
Probab=55.05 E-value=21 Score=33.53 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=22.6
Q ss_pred cCcceEEEEc-CCHHHHHHHHHHHhCC
Q 022023 84 VAKLKVAING-FGRIGRNFLRCWHGRK 109 (304)
Q Consensus 84 ~~~ikVaInG-fGrIGR~vlR~l~~r~ 109 (304)
.+++||-|-| .|.||+.+++.|.++.
T Consensus 7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g 33 (298)
T PLN02778 7 SATLKFLIYGKTGWIGGLLGKLCQEQG 33 (298)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCC
Confidence 3668999999 8999999999998763
No 264
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=54.49 E-value=62 Score=32.13 Aligned_cols=133 Identities=21% Similarity=0.197 Sum_probs=74.6
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
.-+|+|+|+|=.|..-+..+-... .+++++... .+++....+ . +-...+|. +
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g---a~Via~~~~--~~K~e~a~~----l-----------GAd~~i~~--------~ 218 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG---AEVIAITRS--EEKLELAKK----L-----------GADHVINS--------S 218 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC---CeEEEEeCC--hHHHHHHHH----h-----------CCcEEEEc--------C
Confidence 468999999988887776654331 688888754 222211111 0 11122222 1
Q ss_pred CCCCCC-CcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcc-cCCCCCCceEecCCchhh
Q 022023 166 DPLQLP-WAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEK-DYDHEVANIVSNASCTTN 243 (304)
Q Consensus 166 dP~~id-w~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~-~~~~~~~~IISnaSCTTn 243 (304)
+++.+. +.+ -+|++|++.+ ..+-+.+-..|+.|-.-|++-.|... +.|.+ +.. .+-.. ..|+.+..-|-+
T Consensus 219 ~~~~~~~~~~-~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~-~~~~~----~~~~li~~~-~~i~GS~~g~~~ 290 (339)
T COG1064 219 DSDALEAVKE-IADAIIDTVG-PATLEPSLKALRRGGTLVLVGLPGGG-PIPLL----PAFLLILKE-ISIVGSLVGTRA 290 (339)
T ss_pred CchhhHHhHh-hCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCCCCc-ccCCC----CHHHhhhcC-eEEEEEecCCHH
Confidence 222111 111 1799999999 88888888888876655555555311 22211 111 11122 567887777777
Q ss_pred hhhhHHHHHHh
Q 022023 244 CLAPFVKVMDE 254 (304)
Q Consensus 244 ~LaPvLKvL~d 254 (304)
=+--+|+...+
T Consensus 291 d~~e~l~f~~~ 301 (339)
T COG1064 291 DLEEALDFAAE 301 (339)
T ss_pred HHHHHHHHHHh
Confidence 77777776655
No 265
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=54.35 E-value=25 Score=30.33 Aligned_cols=33 Identities=30% Similarity=0.475 Sum_probs=24.8
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+.||+|.|.|++|...++.+.... .+++.+.+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lG---a~v~~~d~ 51 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLG---AEVVVPDE 51 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT----EEEEEES
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCC---CEEEeccC
Confidence 4689999999999999999987653 67666654
No 266
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=54.25 E-value=14 Score=37.76 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=25.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 88 kVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
+|||+|+|.+|..+++.|.++. ++|++.|..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G---~~V~v~drt 31 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG---FTVSVYNRT 31 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC---CeEEEEeCC
Confidence 4899999999999999998753 687777653
No 267
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=54.00 E-value=18 Score=36.06 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=27.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhcc
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL 131 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLL 131 (304)
|||+|+|.|.+|..++.++. . .++|++++. +.+.+.-|.
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~---G~~VigvD~--d~~kv~~l~ 39 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q---NHEVVALDI--LPSRVAMLN 39 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h---CCcEEEEEC--CHHHHHHHH
Confidence 47999999999999996554 3 278877764 344444333
No 268
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=54.00 E-value=25 Score=35.29 Aligned_cols=101 Identities=20% Similarity=0.192 Sum_probs=53.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEE-EEecC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIK-VVSNR 165 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~-V~~~~ 165 (304)
-.|+|.|.|-||-..+.-+..- +--+|++|.- ..+++..-.++--|| .+|.+..- +..
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~a--gA~~IiAvD~--~~~Kl~~A~~fGAT~---------------~vn~~~~~~vv~-- 245 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAA--GAGRIIAVDI--NPEKLELAKKFGATH---------------FVNPKEVDDVVE-- 245 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHc--CCceEEEEeC--CHHHHHHHHhcCCce---------------eecchhhhhHHH--
Confidence 5699999999998766544322 1237777753 233333223222222 23433221 110
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~ 210 (304)
.. .+.+..|+|++|||+|.-...+.+-.....|=+-|+|--+.
T Consensus 246 ~i--~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~ 288 (366)
T COG1062 246 AI--VELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAG 288 (366)
T ss_pred HH--HHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 00 11233499999999998876665554444443345553333
No 269
>PRK06444 prephenate dehydrogenase; Provisional
Probab=53.97 E-value=17 Score=33.10 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=18.8
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r 108 (304)
+||+|+| .|++|+.+.+.+...
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~ 23 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN 23 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC
Confidence 4899999 799999999987643
No 270
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=53.91 E-value=17 Score=36.73 Aligned_cols=31 Identities=29% Similarity=0.363 Sum_probs=25.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
++||+|+|.|.+|..++.+|.+ . +++++++-
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~---~-~~V~g~D~ 36 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK---S-RQVVGFDV 36 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc---C-CEEEEEeC
Confidence 4789999999999999998654 2 78888764
No 271
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=53.82 E-value=16 Score=37.49 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=25.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|||+|+|.+|..+++.|.++. ++|.+.|.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G---~~V~v~dr 32 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG---FKISVYNR 32 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC---CeEEEEeC
Confidence 37999999999999999998753 67777765
No 272
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=53.79 E-value=22 Score=31.71 Aligned_cols=22 Identities=27% Similarity=0.720 Sum_probs=17.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r 108 (304)
.++.|.|||.+||-+++.|-..
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~ 45 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGL 45 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHT
T ss_pred CEEEEeCCCcccHHHHHHHhhC
Confidence 4799999999999999998765
No 273
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=53.66 E-value=52 Score=31.62 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=22.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCc-eEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l-~iVaIn 119 (304)
-+|.|+|.|.||...+.++-... . +++++.
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~G---~~~Vi~~~ 217 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMAK---ASRIIAID 217 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEc
Confidence 57999999999998887765442 4 566663
No 274
>PRK05442 malate dehydrogenase; Provisional
Probab=53.40 E-value=26 Score=34.13 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=74.8
Q ss_pred CcceEEEEcC-CHHHHHHHHHHHhCC-CC---CceEEEEeCC-CCccchhhccccccccccCCceEEEecCCeEEECCEE
Q 022023 85 AKLKVAINGF-GRIGRNFLRCWHGRK-DS---PLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKL 158 (304)
Q Consensus 85 ~~ikVaInGf-GrIGR~vlR~l~~r~-~~---~l~iVaInd~-~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~ 158 (304)
.|.||+|.|. |.||..++-.|..+. .+ .++++-+ |. .+.+ .+.=...|-.|..+ .+.. .
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~Li-Di~~~~~-~~~g~a~Dl~~~~~------------~~~~-~ 67 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLL-EIPPALK-ALEGVVMELDDCAF------------PLLA-G 67 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEE-ecCCccc-ccceeehhhhhhhh------------hhcC-C
Confidence 4679999996 999999887776532 11 1233333 22 1111 01111123323221 1111 1
Q ss_pred EEEEecCCCCCCCCcccCccEEEcCCCCCC----Chhh------------HHHHHHcCC-CEE--EEeCCCCCCCCCeEE
Q 022023 159 IKVVSNRDPLQLPWAELGIDIVIEGTGVFV----DGPG------------AGKHIQAGA-KKV--IITAPAKGADIPTYV 219 (304)
Q Consensus 159 I~V~~~~dP~~idw~~~giDiVve~TG~f~----~~e~------------a~~Hl~aGa-kkV--IISAp~k~~DiP~vV 219 (304)
+++. ..+.+.+. +.|+||-+.|.-+ ++.. ++.-.+.+. +.+ ++|.|- |+-+.+
T Consensus 68 ~~i~-~~~y~~~~----daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v 139 (326)
T PRK05442 68 VVIT-DDPNVAFK----DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA---NTNALI 139 (326)
T ss_pred cEEe-cChHHHhC----CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch---HHHHHH
Confidence 2232 24445443 8899998888643 2221 111112121 222 235554 443333
Q ss_pred eccCcccCCCCCCceEecCCchhhhhhhHHHHHHhhcCceEEEEEE
Q 022023 220 VGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265 (304)
Q Consensus 220 ~GVN~~~~~~~~~~IISnaSCTTn~LaPvLKvL~d~fGI~~g~vTT 265 (304)
.--..-.|.+ ++||.- |+-=-+.+-..|.+++||.--.|..
T Consensus 140 ~~k~s~g~p~--~rViG~---t~LDs~R~r~~la~~l~v~~~~V~~ 180 (326)
T PRK05442 140 AMKNAPDLPA--ENFTAM---TRLDHNRALSQLAAKAGVPVADIKK 180 (326)
T ss_pred HHHHcCCCCH--HHEEee---eHHHHHHHHHHHHHHhCcChHHeEE
Confidence 3211112322 577776 4555678888999999997655543
No 275
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=53.38 E-value=50 Score=31.54 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=22.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCc-eEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l-~iVaIn 119 (304)
-+|.|.|.|.+|..+++++.... . .++++.
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~G---~~~Vi~~~ 216 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIAG---ASRIIGVD 216 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEe
Confidence 57999999999998888765542 4 465554
No 276
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.37 E-value=1.1e+02 Score=30.37 Aligned_cols=87 Identities=18% Similarity=0.280 Sum_probs=51.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEec-C
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN-R 165 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~-~ 165 (304)
.+|.|.|+|..|+..++.|..+. .++. +.|...... . .+.|. .| +.++.. .
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G---~~v~-~~D~~~~~~------------------~---~~~l~-~g--~~~~~~~~ 58 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARG---VTPR-VIDTRITPP------------------G---LDKLP-EN--VERHTGSL 58 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC---CeEE-EEcCCCCch------------------h---HHHHh-cC--CEEEeCCC
Confidence 47999999999999999877642 4543 344211000 0 00110 12 122221 2
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIIS 207 (304)
++..++ +.|+||-+.|.-.+.+......+.|+. |++
T Consensus 59 ~~~~~~----~~d~vv~spgi~~~~~~~~~a~~~g~~--v~~ 94 (438)
T PRK03806 59 NDEWLL----AADLIVASPGIALAHPSLSAAADAGIE--IVG 94 (438)
T ss_pred CHHHhc----CCCEEEECCCCCCCCHHHHHHHHCCCe--EEE
Confidence 222222 468999999998888888888888984 454
No 277
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=53.37 E-value=51 Score=30.91 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=25.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
.+|.|.|.|.+||.+++.|.... --+|.++|..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g--~~~V~v~~R~ 156 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLG--VAEITIVNRT 156 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcC--CCEEEEEeCC
Confidence 57999999999999999998653 1356666653
No 278
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=53.20 E-value=21 Score=36.22 Aligned_cols=29 Identities=21% Similarity=0.517 Sum_probs=23.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEE
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaI 118 (304)
.+|+|.|+|.||+.+++.+.... .+++++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G---a~ViV~ 231 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG---ARVIVT 231 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEE
Confidence 58999999999999999886542 466554
No 279
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=52.90 E-value=14 Score=35.92 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=20.9
Q ss_pred CcceEEEEcC-CHHHHHHHHHHHhC
Q 022023 85 AKLKVAINGF-GRIGRNFLRCWHGR 108 (304)
Q Consensus 85 ~~ikVaInGf-GrIGR~vlR~l~~r 108 (304)
+|.||+|.|. |.||..+++.|..+
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~ 25 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKG 25 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhC
Confidence 3689999996 99999999988864
No 280
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=52.72 E-value=22 Score=35.74 Aligned_cols=33 Identities=24% Similarity=0.589 Sum_probs=27.8
Q ss_pred CcceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.++||.|-| .|-||+.|++.|.++. .+|+++..
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G---~~V~~ldr 152 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRG---DEVIVIDN 152 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 568999999 9999999999998863 68877754
No 281
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=52.57 E-value=31 Score=32.89 Aligned_cols=32 Identities=25% Similarity=0.229 Sum_probs=23.6
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCc-eEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l-~iVaInd 120 (304)
.-+|.|.|.|.||..+++++-... . +++++..
T Consensus 188 g~~VlV~G~g~vG~~a~q~ak~~G---~~~vi~~~~ 220 (369)
T cd08301 188 GSTVAIFGLGAVGLAVAEGARIRG---ASRIIGVDL 220 (369)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC---CCeEEEEcC
Confidence 357999999999999888776542 4 5666643
No 282
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=52.46 E-value=78 Score=29.62 Aligned_cols=87 Identities=22% Similarity=0.278 Sum_probs=46.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
-.|.|.|.|.+|+.++..+.... .+++++... .+...++.+ +|. + ..++.+ +
T Consensus 171 ~~vlV~g~g~vG~~~~~~a~~~G---~~v~~~~~~--~~~~~~~~~----~g~---~--------~vi~~~--------~ 222 (337)
T cd05283 171 KRVGVVGIGGLGHLAVKFAKALG---AEVTAFSRS--PSKKEDALK----LGA---D--------EFIATK--------D 222 (337)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CeEEEEcCC--HHHHHHHHH----cCC---c--------EEecCc--------c
Confidence 46888899999998887765432 466555432 122222211 110 0 011110 0
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCC
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGa 201 (304)
+........++|+|++|+|.-...+.+..+++.+.
T Consensus 223 ~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~l~~~G 257 (337)
T cd05283 223 PEAMKKAAGSLDLIIDTVSASHDLDPYLSLLKPGG 257 (337)
T ss_pred hhhhhhccCCceEEEECCCCcchHHHHHHHhcCCC
Confidence 00000012378999999997644566677777655
No 283
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=52.37 E-value=21 Score=31.78 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=24.8
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
++|.|-| +|.||+.+++.|.++. .+++++..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~---~~v~~~~r 32 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG---HEVRAAVR 32 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC---CEEEEEEe
Confidence 4688999 9999999999999873 56655554
No 284
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=52.19 E-value=47 Score=30.51 Aligned_cols=94 Identities=20% Similarity=0.193 Sum_probs=50.6
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
-.|.|+| .|.+|..+++++.... .+++++... .+....+.+ +|. + .+ ++.+.-.+
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~G---~~vi~~~~s--~~~~~~l~~----~Ga---~-------~v-i~~~~~~~---- 200 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIKG---CKVIGCAGS--DDKVAWLKE----LGF---D-------AV-FNYKTVSL---- 200 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHcC---CEEEEEeCC--HHHHHHHHH----cCC---C-------EE-EeCCCccH----
Confidence 5799999 7999999888776542 566666532 233333322 221 0 00 11000000
Q ss_pred CCCCC-CCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 022023 166 DPLQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (304)
Q Consensus 166 dP~~i-dw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVII 206 (304)
.+.+ .+...|+|+|+|++|. ...+.+..+++.|.+-|.+
T Consensus 201 -~~~v~~~~~~gvd~vld~~g~-~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 201 -EEALKEAAPDGIDCYFDNVGG-EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred -HHHHHHHCCCCcEEEEECCCH-HHHHHHHHhhccCCEEEEE
Confidence 0000 1222479999999997 4556666777766533333
No 285
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=51.94 E-value=26 Score=34.59 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=25.2
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+.+|.|.|+|++|+.+++.+.... .++++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lG---a~V~v~d~ 198 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLG---ATVTILDI 198 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCC---CeEEEEEC
Confidence 467999999999999999987642 46666653
No 286
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=51.67 E-value=23 Score=32.84 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=23.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
|||+|+|.|.||..++..|.+. + .++..+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~-g--~~V~~~~ 30 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA-G--RDVTFLV 30 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-C--CceEEEe
Confidence 4899999999999999988764 2 3544444
No 287
>PRK10537 voltage-gated potassium channel; Provisional
Probab=51.35 E-value=30 Score=34.71 Aligned_cols=31 Identities=19% Similarity=0.110 Sum_probs=24.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
-.|.|.|+|++|+.+++.|.++. .++++|.+
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g---~~vvVId~ 271 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRG---QAVTVIVP 271 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCC---CCEEEEEC
Confidence 45999999999999999987653 57766753
No 288
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=51.30 E-value=21 Score=36.11 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=32.2
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhcc
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL 131 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLL 131 (304)
.+|+|.| +|-||.+.+..+.... .+|+++++.-..+.+.+....
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~-~~f~v~~Laa~~n~~~L~~q~ 46 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNP-DHFQVVALSAGKNVALMVEQI 46 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCc-cccEEEEEEcCCCHHHHHHHH
Confidence 4899999 9999999999876543 468998887654555444333
No 289
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=51.06 E-value=20 Score=36.15 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=33.9
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhcc
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL 131 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLL 131 (304)
.|+.|.| +|-||.+-|..+.... .+|+++++.-...++.+.-..
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p-~~f~vval~ag~n~~~l~~q~ 46 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNP-DKFEVVALAAGKNVELLAEQI 46 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCC-CcEEEEEEecCCcHHHHHHHH
Confidence 5899999 9999999999876553 568999998765666554443
No 290
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=50.61 E-value=53 Score=31.21 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=22.5
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCce-EEEEe
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~-iVaIn 119 (304)
..+|.|+|.|.||..++.++.... .+ ++++.
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G---~~~Vi~~~ 208 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAG---ASKIIAVD 208 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC---CCeEEEEc
Confidence 357999999999998887765442 43 66664
No 291
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=49.74 E-value=27 Score=32.68 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=23.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
.||+|.|.|.+|..++..+.... .+|+.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G---~~V~l~d 33 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG---FDVTIYD 33 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC---CeEEEEe
Confidence 47999999999999999887542 4555553
No 292
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=49.51 E-value=35 Score=28.50 Aligned_cols=94 Identities=21% Similarity=0.229 Sum_probs=52.9
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCc-eEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEec
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l-~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (304)
..+|.|.|.|-+||.++..|.+.. . ++..+|.. .+++..|.+ . | ++..+.+...
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g---~~~i~i~nRt--~~ra~~l~~--~----~--------------~~~~~~~~~~ 66 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALG---AKEITIVNRT--PERAEALAE--E----F--------------GGVNIEAIPL 66 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTT---SSEEEEEESS--HHHHHHHHH--H----H--------------TGCSEEEEEG
T ss_pred CCEEEEECCHHHHHHHHHHHHHcC---CCEEEEEECC--HHHHHHHHH--H----c--------------CccccceeeH
Confidence 358999999999999999998863 3 46667763 333332321 0 0 1112233222
Q ss_pred CCCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCC--EEEEeC
Q 022023 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK--KVIITA 208 (304)
Q Consensus 165 ~dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGak--kVIISA 208 (304)
.+.. -.....|+||-||+.-.. .--..+++.+-+ ++++.-
T Consensus 67 ~~~~---~~~~~~DivI~aT~~~~~-~i~~~~~~~~~~~~~~v~Dl 108 (135)
T PF01488_consen 67 EDLE---EALQEADIVINATPSGMP-IITEEMLKKASKKLRLVIDL 108 (135)
T ss_dssp GGHC---HHHHTESEEEE-SSTTST-SSTHHHHTTTCHHCSEEEES
T ss_pred HHHH---HHHhhCCeEEEecCCCCc-ccCHHHHHHHHhhhhceecc
Confidence 2221 112368999999998654 222345554432 477753
No 293
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=49.51 E-value=28 Score=33.82 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=25.9
Q ss_pred cceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 86 ~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
+++|.|-| .|-||+.+++.|.++. .+|+++.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G---~~V~~v~ 52 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEG---HYIIASD 52 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCC---CEEEEEE
Confidence 57899999 8999999999998763 5777665
No 294
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=49.40 E-value=52 Score=30.57 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=24.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|.|.|.|-+|+.+++.|.+.. .++.+++.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g---~~v~v~~R 148 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKAD---CNVIIANR 148 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 47999999999999999988652 46666664
No 295
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=49.05 E-value=35 Score=33.94 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=19.9
Q ss_pred cceEEEEcCCHHHHHHHHHHHhC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r 108 (304)
..+|.|+|.|-+|-.++..|...
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~ 64 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAA 64 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHc
Confidence 35899999999999999988753
No 296
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=48.97 E-value=80 Score=30.21 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=22.6
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCc-eEEEEe
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l-~iVaIn 119 (304)
.-.|.|+|-|.||...+.++-... . .++++.
T Consensus 187 g~~VlV~G~G~vG~~a~~~ak~~G---~~~vi~~~ 218 (368)
T cd08300 187 GSTVAVFGLGAVGLAVIQGAKAAG---ASRIIGID 218 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC---CCeEEEEe
Confidence 357999999999999888776542 4 465553
No 297
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=48.62 E-value=27 Score=34.01 Aligned_cols=30 Identities=30% Similarity=0.312 Sum_probs=23.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
.+|+|+|.|.||+.++..+... .++|+...
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a---G~~V~l~D 37 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH---GLDVVAWD 37 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC---CCeEEEEe
Confidence 4799999999999999887754 37765554
No 298
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=48.57 E-value=36 Score=33.15 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=20.7
Q ss_pred CcceEEEEcC-CHHHHHHHHHHHhC
Q 022023 85 AKLKVAINGF-GRIGRNFLRCWHGR 108 (304)
Q Consensus 85 ~~ikVaInGf-GrIGR~vlR~l~~r 108 (304)
.|.||+|.|. |.||-.++-.|..+
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~ 26 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASG 26 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhC
Confidence 5789999996 99999998877754
No 299
>PLN02206 UDP-glucuronate decarboxylase
Probab=48.51 E-value=34 Score=34.50 Aligned_cols=33 Identities=27% Similarity=0.489 Sum_probs=27.0
Q ss_pred CcceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..+||.|-| .|-||+.|++.|.++. .+|+++..
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G---~~V~~ld~ 151 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARG---DSVIVVDN 151 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCc---CEEEEEeC
Confidence 347899999 9999999999998863 57777743
No 300
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=48.01 E-value=29 Score=32.27 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=24.7
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
|||.|-| .|-||+.+++.|.++. .+|+++.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~ 31 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG---HDVVILD 31 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC---CeEEEEe
Confidence 4799999 8999999999998753 5777664
No 301
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=47.99 E-value=27 Score=34.91 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=25.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|+|+|+|.||+.+++.|.... --++++++.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G--~~~V~v~~r 212 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKG--VGKILIANR 212 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCC--CCEEEEEeC
Confidence 58999999999999999987642 135666665
No 302
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=47.74 E-value=61 Score=30.97 Aligned_cols=137 Identities=17% Similarity=0.175 Sum_probs=68.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
.+|.|+|.|.||..+++++-... .+++++... .+....+++ .+|. +..++ ....-.+
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~G---~~vi~~~~~--~~~~~~~~~---~~Ga---~~~i~-------~~~~~~~----- 238 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAMG---HHVTVISSS--DKKREEALE---HLGA---DDYLV-------SSDAAEM----- 238 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC---CeEEEEeCC--HHHHHHHHH---hcCC---cEEec-------CCChHHH-----
Confidence 46899999999998888766542 466666432 222222221 1221 10110 0000000
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccc-CCCCCCceEecCCchhhhh
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKD-YDHEVANIVSNASCTTNCL 245 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~~-~~~~~~~IISnaSCTTn~L 245 (304)
.+. . .++|+||||+|.-...+.+-..++.|.+-|++..+.. ..+ ++... +... ..|.....++..-+
T Consensus 239 -~~~--~-~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~--~~~-----~~~~~~~~~~-~~i~g~~~~~~~~~ 306 (357)
T PLN02514 239 -QEA--A-DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINT--PLQ-----FVTPMLMLGR-KVITGSFIGSMKET 306 (357)
T ss_pred -HHh--c-CCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCC--CCc-----ccHHHHhhCC-cEEEEEecCCHHHH
Confidence 011 1 2689999999965455556667776664444433321 111 22111 1122 45666555555456
Q ss_pred hhHHHHHHhhcCce
Q 022023 246 APFVKVMDEELGIV 259 (304)
Q Consensus 246 aPvLKvL~d~fGI~ 259 (304)
.-++..+.+. .++
T Consensus 307 ~~~~~~~~~g-~l~ 319 (357)
T PLN02514 307 EEMLEFCKEK-GLT 319 (357)
T ss_pred HHHHHHHHhC-CCc
Confidence 6666666554 454
No 303
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=47.57 E-value=45 Score=24.89 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=23.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 88 kVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
||+|+|-|.||-.++..|.+.. .++..|..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g---~~vtli~~ 30 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG---KEVTLIER 30 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT---SEEEEEES
T ss_pred CEEEECcCHHHHHHHHHHHHhC---cEEEEEec
Confidence 6899999999999999998753 45444443
No 304
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.28 E-value=41 Score=33.39 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=22.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 88 kVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
||.|+|.|..|+..++.|..+. .++. +.|
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G---~~V~-~~D 30 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG---WEVV-VSD 30 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC---CEEE-EEC
Confidence 6899999999999999988653 4544 444
No 305
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=47.04 E-value=1.3e+02 Score=27.91 Aligned_cols=30 Identities=23% Similarity=0.172 Sum_probs=22.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCce-EEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~-iVaIn 119 (304)
..|.|+|-|.+|..+++++.... .+ ++++.
T Consensus 167 ~~VlV~g~g~vg~~~~~la~~~g---~~~v~~~~ 197 (343)
T cd08235 167 DTVLVIGAGPIGLLHAMLAKASG---ARKVIVSD 197 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEEC
Confidence 47999999999999888766542 55 55553
No 306
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=46.73 E-value=31 Score=32.92 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=26.1
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+||-|-| .|-||+.+++.|.++. .+|+++..
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g---~~V~~~d~ 47 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLN---QTVIGLDN 47 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 5899999 8999999999999863 57777753
No 307
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=46.67 E-value=12 Score=40.33 Aligned_cols=23 Identities=43% Similarity=0.719 Sum_probs=20.7
Q ss_pred cceEEEEcCCHHHHHHHHHHHhC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r 108 (304)
..||.|+|.|-+|-.++|.|...
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~ 360 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGW 360 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc
Confidence 46899999999999999999864
No 308
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=46.39 E-value=30 Score=32.46 Aligned_cols=31 Identities=23% Similarity=0.497 Sum_probs=25.9
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
|||-|.| .|.||..+.+.|.++ .+++++++.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~---~~~v~~~~r 32 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER---GYEVIATSR 32 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT---SEEEEEEST
T ss_pred CEEEEECCCCHHHHHHHHHHhhC---CCEEEEeCc
Confidence 6899999 899999999998764 378888854
No 309
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=46.34 E-value=74 Score=28.77 Aligned_cols=31 Identities=29% Similarity=0.353 Sum_probs=23.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCce-EEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~-iVaInd 120 (304)
.+|.|+|.|.+|..+++++.... .+ ++++..
T Consensus 131 ~~vlI~g~g~vg~~~~~la~~~g---~~~v~~~~~ 162 (312)
T cd08269 131 KTVAVIGAGFIGLLFLQLAAAAG---ARRVIAIDR 162 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEECC
Confidence 57899999999999988876542 56 666654
No 310
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=46.31 E-value=66 Score=31.01 Aligned_cols=35 Identities=14% Similarity=0.296 Sum_probs=27.5
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
|+.+|.|+|-|.-|-.+++.|.++ +++.+|+.|..
T Consensus 1 m~~~vvIiG~G~AG~~~a~~lr~~-~~~~~Itvi~~ 35 (377)
T PRK04965 1 MSNGIVIIGSGFAARQLVKNIRKQ-DAHIPITLITA 35 (377)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhh-CcCCCEEEEeC
Confidence 345899999999999999888654 35678888865
No 311
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=46.11 E-value=22 Score=34.39 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=23.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
++++++|+||.|.++.+-|..+. -++|+-.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g---hdvV~yD 30 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG---HDVVGYD 30 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC---CeEEEEc
Confidence 47899999999999999888653 4665553
No 312
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=45.91 E-value=25 Score=29.07 Aligned_cols=23 Identities=26% Similarity=0.151 Sum_probs=20.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r 108 (304)
..+|+|.|.|.+|+.+++.|...
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~ 41 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAEL 41 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC
Confidence 36899999999999999998764
No 313
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=45.85 E-value=10 Score=35.27 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=18.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhC
Q 022023 88 KVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 88 kVaInGfGrIGR~vlR~l~~r 108 (304)
||.|+|.|-+|-.+++.|...
T Consensus 1 kVlvvG~GGlG~eilk~La~~ 21 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM 21 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc
Confidence 589999999999999998754
No 314
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=45.73 E-value=16 Score=37.38 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.1
Q ss_pred CcceEEEEcC-CHHHHHHHHHHHhC
Q 022023 85 AKLKVAINGF-GRIGRNFLRCWHGR 108 (304)
Q Consensus 85 ~~ikVaInGf-GrIGR~vlR~l~~r 108 (304)
.++||+|.|. |.||-.++-.|..+
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc
Confidence 4799999998 99999999888765
No 315
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=45.67 E-value=30 Score=34.57 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=24.9
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCc-eEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l-~iVaInd 120 (304)
..+|+|+|.|.||+.+++.|.... . ++++++.
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~G---~~~V~v~~r 214 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEKG---VRKITVANR 214 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHCC---CCeEEEEeC
Confidence 368999999999999999987642 4 5555554
No 316
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=45.57 E-value=21 Score=34.74 Aligned_cols=37 Identities=35% Similarity=0.509 Sum_probs=27.7
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCC------CCceEEEEeCC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKD------SPLDVVVVNDS 121 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~------~~l~iVaInd~ 121 (304)
..++|+|+|.|-|||.+|..+..... -.+++|+|.+.
T Consensus 2 k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~ 44 (364)
T KOG0455|consen 2 KKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDS 44 (364)
T ss_pred ccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecc
Confidence 35789999999999999987664321 23588888874
No 317
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.20 E-value=1.7e+02 Score=29.16 Aligned_cols=85 Identities=20% Similarity=0.314 Sum_probs=50.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEec-C
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN-R 165 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~-~ 165 (304)
.+|.|.|.|.+|+..++.|.... +..++. +.|....... .+.|. .| |+++.. .
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~-~~~~v~-~~D~~~~~~~---------------------~~~l~-~g--~~~~~g~~ 61 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQ-PQLTVK-VIDTRETPPG---------------------QEQLP-ED--VELHSGGW 61 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcC-CCCeEE-EEeCCCCchh---------------------HHHhh-cC--CEEEeCCC
Confidence 47999999999999999888652 224443 4543110000 00111 01 233222 2
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCC
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGa 201 (304)
++++++ +.|+||-+.|+-.+.+......+.|.
T Consensus 62 ~~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~gi 93 (438)
T PRK04663 62 NLEWLL----EADLVVTNPGIALATPEIQQVLAAGI 93 (438)
T ss_pred ChHHhc----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 455553 57899999999877777777667776
No 318
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=45.15 E-value=33 Score=33.73 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=25.7
Q ss_pred cceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.++|.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G---~~V~~l~R 92 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRG---YNVVAVAR 92 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEEe
Confidence 46899999 8999999999998763 56666643
No 319
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=44.85 E-value=34 Score=33.69 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=28.2
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
.++||||+|. .+|+..++++.+.. ..+++++|-|.
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~-~~~eLvaV~d~ 36 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAP-ERFELAGILAQ 36 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCC-CCcEEEEEEcC
Confidence 3589999999 68999999886532 25899999987
No 320
>PRK04148 hypothetical protein; Provisional
Probab=44.36 E-value=40 Score=29.07 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=23.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.||.++|.| -|..+++.|.+.. .+|++|.-
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G---~~ViaIDi 47 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESG---FDVIVIDI 47 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCC---CEEEEEEC
Confidence 579999999 7887888887642 78888853
No 321
>PLN02740 Alcohol dehydrogenase-like
Probab=44.22 E-value=44 Score=32.27 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=22.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCc-eEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l-~iVaIn 119 (304)
-+|.|+|.|.||..+++++..+. . +++++.
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~G---~~~Vi~~~ 230 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARARG---ASKIIGVD 230 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CCcEEEEc
Confidence 47999999999999888776542 4 466553
No 322
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.16 E-value=84 Score=30.11 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=16.6
Q ss_pred ceEEEEcCCH-HHHHHHHHHHhC
Q 022023 87 LKVAINGFGR-IGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInGfGr-IGR~vlR~l~~r 108 (304)
.+|.|.|.|. +||.++..|.++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~ 182 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNA 182 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhC
Confidence 4788888776 888888777654
No 323
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=43.96 E-value=12 Score=37.21 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.0
Q ss_pred cceEEEEcCCHHHHHHHHHHHhC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r 108 (304)
..+|.|.|.|-+|-.++..|...
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~ 63 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASA 63 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc
Confidence 35799999999999999998754
No 324
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=43.92 E-value=39 Score=33.97 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.3
Q ss_pred CcceEEEEcC-CHHHHHHHHHHHhCC
Q 022023 85 AKLKVAINGF-GRIGRNFLRCWHGRK 109 (304)
Q Consensus 85 ~~ikVaInGf-GrIGR~vlR~l~~r~ 109 (304)
.|.||+|.|. |+||-.++-.|..+.
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~~ 68 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASGE 68 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcc
Confidence 4789999997 999999998877553
No 325
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=43.81 E-value=35 Score=32.42 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=18.7
Q ss_pred cceEEEEcCCHHHHHHHHHHHh
Q 022023 86 KLKVAINGFGRIGRNFLRCWHG 107 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~ 107 (304)
.+||+|+|.|.||-.+.-.|.+
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~ 23 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLAR 23 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHh
Confidence 4689999999999988877764
No 326
>PRK06988 putative formyltransferase; Provisional
Probab=43.52 E-value=35 Score=32.90 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=24.5
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEE
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaI 118 (304)
|++||++.|.+.+|...|+.|++.. +++++|
T Consensus 1 ~~mkIvf~Gs~~~a~~~L~~L~~~~---~~i~~V 31 (312)
T PRK06988 1 MKPRAVVFAYHNVGVRCLQVLLARG---VDVALV 31 (312)
T ss_pred CCcEEEEEeCcHHHHHHHHHHHhCC---CCEEEE
Confidence 3479999999999999999998753 555444
No 327
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=43.39 E-value=1.3e+02 Score=26.19 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=22.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|.|+|.|.+|+.+++.+.... .+++++..
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g---~~v~~~~~ 166 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAG---ARVIVTDR 166 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEcC
Confidence 57999997779999988776542 56666643
No 328
>PLN02827 Alcohol dehydrogenase-like
Probab=43.34 E-value=1e+02 Score=29.85 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=22.2
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCc-eEEEEe
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l-~iVaIn 119 (304)
.-+|.|+|.|.||..++.++..+. . .++++.
T Consensus 194 g~~VlV~G~G~vG~~~iqlak~~G---~~~vi~~~ 225 (378)
T PLN02827 194 GSSVVIFGLGTVGLSVAQGAKLRG---ASQIIGVD 225 (378)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC---CCeEEEEC
Confidence 357999999999998888765542 4 355543
No 329
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=43.32 E-value=70 Score=30.07 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=22.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCc-eEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l-~iVaIn 119 (304)
.+|.|+|.|.+|...++.+.... . .++++.
T Consensus 174 ~~vlI~g~g~vG~~a~q~a~~~G---~~~v~~~~ 204 (351)
T cd08233 174 DTALVLGAGPIGLLTILALKAAG---ASKIIVSE 204 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEEC
Confidence 47999999999999988877542 5 555554
No 330
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.30 E-value=33 Score=35.10 Aligned_cols=33 Identities=27% Similarity=0.232 Sum_probs=26.1
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
++.+|+|+|.|..|-..+|+|.+.. +++++...
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g---~~v~vfEr 37 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREG---HEVVVFER 37 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCC---CCceEEEe
Confidence 4678999999999999999998652 55555544
No 331
>PTZ00357 methyltransferase; Provisional
Probab=43.16 E-value=72 Score=35.27 Aligned_cols=104 Identities=19% Similarity=0.324 Sum_probs=50.8
Q ss_pred CcceEEEEcCCHHHHHHHHHHHh--CCCCCceEEEEeCCCCccchhhccc-c--ccccc----cCCceEEEecCCeEEEC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHG--RKDSPLDVVVVNDSGGVKNASHLLK-Y--DSLLG----TFKADVKIVDNETISVD 155 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~--r~~~~l~iVaInd~~~~~~~ayLLk-y--DS~hG----~f~g~v~~~~~~~L~in 155 (304)
..+.|.|+|-|| |-+|-++|-. ..+-+++|.||.+. +..++++++ + +..-. .|.+.|++... +
T Consensus 700 ~~vVImVVGAGR-GPLVdraLrAak~~gvkVrIyAVEKN--PpAA~~tllr~~N~eeW~n~~~~~G~~VtII~s-----D 771 (1072)
T PTZ00357 700 RTLHLVLLGCGR-GPLIDECLHAVSALGVRLRIFAIEKN--LPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVA-----D 771 (1072)
T ss_pred ceEEEEEEcCCc-cHHHHHHHHHHHHcCCcEEEEEEecC--cchHHHHHHHHhcccccccccccCCCeEEEEeC-----c
Confidence 346799999887 5555444431 22346899999883 333334332 2 11110 01222332110 1
Q ss_pred CEEEEEEec--CCCCCCCCcccCccEEE-cCCCCCCChhhHHHHHH
Q 022023 156 GKLIKVVSN--RDPLQLPWAELGIDIVI-EGTGVFVDGPGAGKHIQ 198 (304)
Q Consensus 156 Gk~I~V~~~--~dP~~idw~~~giDiVv-e~TG~f~~~e~a~~Hl~ 198 (304)
.+.+..-.+ ......+|+ .+||+| |=-|.|-+.|..+.-|.
T Consensus 772 MR~W~~pe~~~s~~~P~~~g--KaDIVVSELLGSFGDNELSPECLD 815 (1072)
T PTZ00357 772 GRTIATAAENGSLTLPADFG--LCDLIVSELLGSLGDNELSPECLE 815 (1072)
T ss_pred cccccccccccccccccccc--ccceehHhhhcccccccCCHHHHH
Confidence 111111000 000112343 588665 77899999887776665
No 332
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=43.08 E-value=44 Score=31.73 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=25.7
Q ss_pred cceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.++|.|-| .|.||+.+++.|.++. .+|+++.+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G---~~V~~~~r 42 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRG---YTVHATLR 42 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 36899999 8999999999998763 57766543
No 333
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=42.49 E-value=32 Score=33.87 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=23.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
|||.+.|.|.|||.++-.++.+.+ .+|+.|.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g--~~V~~vd 31 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNG--FEVTFVD 31 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCC--CeEEEEE
Confidence 589999999999977666665543 6666665
No 334
>PRK07326 short chain dehydrogenase; Provisional
Probab=42.34 E-value=43 Score=29.23 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=24.7
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g---~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEG---YKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCC---CEEEEeeC
Confidence 5799999 8999999999998753 56666653
No 335
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=42.06 E-value=47 Score=28.82 Aligned_cols=30 Identities=27% Similarity=0.135 Sum_probs=24.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
.+|.|+|-|.+|...++.|.+.. -++++|+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~g---a~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTG---AFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEc
Confidence 58999999999999999988753 4666664
No 336
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=41.82 E-value=95 Score=28.62 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=23.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|.|.|.|-+|+.+++++.... .+++++..
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~G---~~v~~~~~ 194 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAMG---FETVAITR 194 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 57899998889998888776542 56666654
No 337
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=41.56 E-value=43 Score=31.61 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=25.5
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
++|.|-| .|.||+.+++.|.++. ..+|+++..
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~--~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETT--DWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCC--CCeEEEEeC
Confidence 4799999 7999999999998652 267777753
No 338
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=41.14 E-value=51 Score=28.50 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=23.6
Q ss_pred EEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 89 VaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
|.|.| +|-||+.+++.|.++. ..++++...
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g---~~v~~~~~~ 31 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG---HEVIVLSRS 31 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---TEEEEEESC
T ss_pred EEEEccCCHHHHHHHHHHHHcC---Ccccccccc
Confidence 57889 9999999999999874 466655543
No 339
>PRK07877 hypothetical protein; Provisional
Probab=40.75 E-value=14 Score=40.09 Aligned_cols=107 Identities=15% Similarity=0.136 Sum_probs=53.9
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCC-CCceEEEEeCC-----CCccchhhccccccccccCCceEEEecCCeEEECC-EE
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDS-----GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDG-KL 158 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~-~~l~iVaInd~-----~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inG-k~ 158 (304)
..+|+|+|.| +|-.++..|....- +++. |-|. .+++... +. .+.-|+.+..+- ...-..+|- -.
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~---lvD~D~ve~sNLnRq~--~~-~~diG~~Kv~~a--~~~l~~inp~i~ 177 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELR---LADFDTLELSNLNRVP--AG-VFDLGVNKAVVA--ARRIAELDPYLP 177 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEE---EEcCCEEccccccccc--CC-hhhcccHHHHHH--HHHHHHHCCCCE
Confidence 4689999999 99999988874321 2233 3343 2344321 11 122355433222 111122332 23
Q ss_pred EEEEecC-CCCCCCCcccCccEEEcCCCCCCChhhHHHHH-HcCC
Q 022023 159 IKVVSNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHI-QAGA 201 (304)
Q Consensus 159 I~V~~~~-dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl-~aGa 201 (304)
|..+.+. ++++++=--.++|+||||+..|.++-...... +.|.
T Consensus 178 v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~i 222 (722)
T PRK07877 178 VEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRI 222 (722)
T ss_pred EEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 3343321 33333311137899999999997665444332 3354
No 340
>PRK08017 oxidoreductase; Provisional
Probab=40.62 E-value=49 Score=29.22 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=24.0
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|.|.| .|.||+.+++.|.++. .+++++..
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g---~~v~~~~r 34 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG---YRVLAACR 34 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CEEEEEeC
Confidence 3699999 6999999999998753 46666543
No 341
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=40.50 E-value=41 Score=31.81 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=20.4
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCCCc-eEEEE
Q 022023 89 VAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (304)
Q Consensus 89 VaInGfGrIGR~vlR~l~~r~~~~l-~iVaI 118 (304)
|+|+|.|.+|..++.++..+. + +++.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~---l~eV~L~ 28 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKE---LGDVVLL 28 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCC---CcEEEEE
Confidence 689999999999988776542 3 65555
No 342
>PLN02240 UDP-glucose 4-epimerase
Probab=40.44 E-value=50 Score=30.93 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=25.8
Q ss_pred cceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..+|.|-| .|-||+.+++.|.++. .+|+++..
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g---~~V~~~~~ 37 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAG---YKVVVIDN 37 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeC
Confidence 36899999 8999999999998763 57777743
No 343
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=40.37 E-value=1e+02 Score=29.02 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=18.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r 108 (304)
.+|.|+|.|.+|...++++...
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~ 183 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVAL 183 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 5799999999999888776654
No 344
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=40.09 E-value=53 Score=27.07 Aligned_cols=29 Identities=28% Similarity=0.356 Sum_probs=22.1
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 89 VaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
|+|+|.|.||..++-.|.+. + .++..+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g--~~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-G--HDVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-T--CEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHC-C--CceEEEEc
Confidence 78999999999999888663 2 46555654
No 345
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=40.05 E-value=1.2e+02 Score=27.10 Aligned_cols=85 Identities=20% Similarity=0.181 Sum_probs=46.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCce-EEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~-iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
.+|.|+|.|.+|..+++.+.... .+ ++++... .+....+-+ +|.++ . + ++..
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~g---~~~vi~~~~~--~~~~~~~~~----~g~~~--------~-~-~~~~-------- 151 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAAG---AREVVGVDPD--AARRELAEA----LGPAD--------P-V-AADT-------- 151 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCcEEEECCC--HHHHHHHHH----cCCCc--------c-c-cccc--------
Confidence 57899999999999888776543 45 6666432 222221111 22100 0 0 0000
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCC
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGa 201 (304)
... +...++|++|+++|.-...+....+++.+.
T Consensus 152 -~~~--~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g 184 (277)
T cd08255 152 -ADE--IGGRGADVVIEASGSPSALETALRLLRDRG 184 (277)
T ss_pred -hhh--hcCCCCCEEEEccCChHHHHHHHHHhcCCc
Confidence 000 123479999999886544555666776655
No 346
>PRK09291 short chain dehydrogenase; Provisional
Probab=39.97 E-value=51 Score=29.13 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=24.2
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|.|.| .|.||+.+++.|.++. .+++++..
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G---~~v~~~~r 34 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKG---HNVIAGVQ 34 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 4689999 8999999999998753 56665543
No 347
>PLN02583 cinnamoyl-CoA reductase
Probab=39.84 E-value=51 Score=30.63 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=24.1
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
.+|.|-| .|.||+.+++.|.++. .+|+++.
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G---~~V~~~~ 37 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRG---YTVHAAV 37 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEEE
Confidence 4699999 8999999999998763 5666553
No 348
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=38.92 E-value=28 Score=35.26 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=20.9
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r 108 (304)
.+.+|||.|||-.|+.+++-+...
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~a 74 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDA 74 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhc
Confidence 457899999999999999988754
No 349
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=38.89 E-value=1.3e+02 Score=32.71 Aligned_cols=82 Identities=17% Similarity=0.152 Sum_probs=47.9
Q ss_pred eEEEEcCCHHHHHH-HHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 88 KVAINGFGRIGRNF-LRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 88 kVaInGfGrIGR~v-lR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
+|.|.|.|..|... +|.|.++. .+| .+.|.........|-+ .| |.++...+
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G---~~V-~~sD~~~~~~~~~L~~----------------------~g--i~~~~g~~ 57 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRG---YSV-SGSDLSEGKTVEKLKA----------------------KG--ARFFLGHQ 57 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCC---CeE-EEECCCCChHHHHHHH----------------------CC--CEEeCCCC
Confidence 59999999999987 88888763 453 3555422111222110 01 12222223
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCC
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGa 201 (304)
++.++ +.|+||-+.|+-.+.+......+.|.
T Consensus 58 ~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~gi 88 (809)
T PRK14573 58 EEHVP----EDAVVVYSSSISKDNVEYLSAKSRGN 88 (809)
T ss_pred HHHcC----CCCEEEECCCcCCCCHHHHHHHHCCC
Confidence 33332 57899999998877766666656665
No 350
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=38.88 E-value=45 Score=30.56 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=24.6
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
++|.|.| .|.||+.+++.|.++. .+++++..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g---~~V~~~~r 32 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG---EEVRVLVR 32 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC---CEEEEEEe
Confidence 3689999 8999999999998763 56666654
No 351
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=38.74 E-value=1.5e+02 Score=27.08 Aligned_cols=96 Identities=17% Similarity=0.206 Sum_probs=49.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
-+|.|+|.|.+|..+++++..+. .+++++... .+...++-+ +|. . .+ ++.+.- ...+.
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~G---~~V~~~~~s--~~~~~~~~~----~g~-~---------~~-~~~~~~-~~~~~- 224 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAMG---AAVIAVDIK--EEKLELAKE----LGA-D---------EV-LNSLDD-SPKDK- 224 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CEEEEEcCC--HHHHHHHHH----hCC-C---------EE-EcCCCc-CHHHH-
Confidence 46888899999999888776543 566666432 222222211 111 0 00 110000 00000
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVII 206 (304)
....+ ..++|+|+||.|.-...+.+.++++.|..-|.+
T Consensus 225 ~~~~~--~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 225 KAAGL--GGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HHHhc--CCCceEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 00011 237899999998654556677888876633333
No 352
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=38.42 E-value=51 Score=33.91 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=25.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
|||+|+|.|.+|-.++-+|.++ +..++++++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~-g~g~~V~gvD 33 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALK-CPDIEVVVVD 33 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCCCeEEEEE
Confidence 6899999999999888777654 2347777774
No 353
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.74 E-value=58 Score=28.78 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=23.9
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
..|.|.| .|.||+.+++.|.++. .+++.+.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g---~~vi~~~ 33 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAG---FDLAIND 33 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 4688889 8999999999998763 4666664
No 354
>PRK07411 hypothetical protein; Validated
Probab=37.52 E-value=16 Score=36.38 Aligned_cols=184 Identities=13% Similarity=0.069 Sum_probs=83.8
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC--CCccchhh--ccccccccccCCceEEEecCCeE-EECC-EEE
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASH--LLKYDSLLGTFKADVKIVDNETI-SVDG-KLI 159 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~--~~~~~~ay--LLkyDS~hG~f~g~v~~~~~~~L-~inG-k~I 159 (304)
..+|.|+|.|-+|-.++..|..-. +.-+.|-|. .+...+.. |+..+. -|+.+..... +.| .+|- -.|
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~G---vg~l~lvD~D~ve~sNL~RQ~l~~~~d-vG~~Ka~~a~---~~l~~~np~v~v 110 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAG---IGRIGIVDFDVVDSSNLQRQVIHGTSW-VGKPKIESAK---NRILEINPYCQV 110 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcC---CCEEEEECCCEecccccCcCcccChHH-CCCcHHHHHH---HHHHHHCCCCeE
Confidence 358999999999999999887532 433334444 12222221 222122 2433221110 111 1221 122
Q ss_pred EEEecC-CCCCC-C-CcccCccEEEcCCCCCCChhhHHHH-HHcCCCEEEEeCCCCCCCCCeEEecc--CcccCCCCCCc
Q 022023 160 KVVSNR-DPLQL-P-WAELGIDIVIEGTGVFVDGPGAGKH-IQAGAKKVIITAPAKGADIPTYVVGV--NEKDYDHEVAN 233 (304)
Q Consensus 160 ~V~~~~-dP~~i-d-w~~~giDiVve~TG~f~~~e~a~~H-l~aGakkVIISAp~k~~DiP~vV~GV--N~~~~~~~~~~ 233 (304)
..+... ++++. + + .+.|+||+|+..+.++...... .+.|..-|.-+..+...-+-.|.++- ..+.+-+....
T Consensus 111 ~~~~~~~~~~~~~~~~--~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g~~~v~~~~~~~c~~c~~~~~~~ 188 (390)
T PRK07411 111 DLYETRLSSENALDIL--APYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQATVFNYEGGPNYRDLYPEPPP 188 (390)
T ss_pred EEEecccCHHhHHHHH--hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEEEEEEECCCCCCChHHhcCCCCC
Confidence 222211 12111 1 2 2689999999999776655433 33454333222222110111111211 00111110000
Q ss_pred eEecCCchh-------------hhhhhHHHHHHhhcCceEEEEEEEeeccCccccccC
Q 022023 234 IVSNASCTT-------------NCLAPFVKVMDEELGIVKGAMTTTHSYTGDQVIRHT 278 (304)
Q Consensus 234 IISnaSCTT-------------n~LaPvLKvL~d~fGI~~g~vTTvHa~T~dQ~l~D~ 278 (304)
--.-++|.+ -+..-++|.|...-....+.+-++...+++.+.+.-
T Consensus 189 ~~~~~~c~~~gvlg~~~~~~g~~~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~~~~~ 246 (390)
T PRK07411 189 PGMVPSCAEGGVLGILPGIIGVIQATETIKIILGAGNTLSGRLLLYNALDMKFRELKL 246 (390)
T ss_pred cccCCCCccCCcCcchHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEECCCCceeEEec
Confidence 001234542 223456777765433556788888888887776663
No 355
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=37.50 E-value=2.6e+02 Score=25.14 Aligned_cols=88 Identities=24% Similarity=0.275 Sum_probs=49.9
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
..|.|.| .|.+|+.++..+.... .+++++... .+....+.+ +|. + ......+
T Consensus 134 ~~vli~g~~~~~g~~~~~~a~~~g---~~v~~~~~~--~~~~~~~~~----~g~---~-------~~~~~~~-------- 186 (305)
T cd08270 134 RRVLVTGASGGVGRFAVQLAALAG---AHVVAVVGS--PARAEGLRE----LGA---A-------EVVVGGS-------- 186 (305)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC---CEEEEEeCC--HHHHHHHHH----cCC---c-------EEEeccc--------
Confidence 5789999 5999999888776542 566555432 233322221 121 0 0101100
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIIS 207 (304)
++...++|+++|++|.- ..+.+.++++.+..-|.+.
T Consensus 187 -----~~~~~~~d~vl~~~g~~-~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 187 -----ELSGAPVDLVVDSVGGP-QLARALELLAPGGTVVSVG 222 (305)
T ss_pred -----cccCCCceEEEECCCcH-HHHHHHHHhcCCCEEEEEe
Confidence 11223789999999974 5566778888766444443
No 356
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=37.40 E-value=51 Score=29.86 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=24.8
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+|-|-| .|-||+.|++.|.++. .+|+++..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g---~~V~~~~r 32 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAG---HDVRGLDR 32 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCC---CeEEEEeC
Confidence 488999 8999999999999762 67777765
No 357
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=37.09 E-value=87 Score=29.25 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=51.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
-+|.|.|.|.+|..+++++.... .+++++... .+....+-++ |. + -++|.+.-.+. +.
T Consensus 165 ~~vlV~g~g~iG~~~~~~a~~~G---~~vi~~~~~--~~~~~~~~~~----g~----------~-~~i~~~~~~~~--~~ 222 (333)
T cd08296 165 DLVAVQGIGGLGHLAVQYAAKMG---FRTVAISRG--SDKADLARKL----GA----------H-HYIDTSKEDVA--EA 222 (333)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CeEEEEeCC--hHHHHHHHHc----CC----------c-EEecCCCccHH--HH
Confidence 47999999999999888877653 566666542 2222222211 11 0 11221110000 00
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIIS 207 (304)
. ..| .++|+++|++|.-...+.+.+++..|..-|.+.
T Consensus 223 ~--~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 223 L--QEL--GGAKLILATAPNAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred H--Hhc--CCCCEEEECCCchHHHHHHHHHcccCCEEEEEe
Confidence 0 113 268999999875445566667777665334443
No 358
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=36.97 E-value=51 Score=29.85 Aligned_cols=30 Identities=23% Similarity=0.446 Sum_probs=23.4
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
||.|.| .|.||+.+++.|.++. .+++++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g---~~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG---RVVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC---CEEEEeCC
Confidence 578999 8999999999998753 46665543
No 359
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=36.81 E-value=1.2e+02 Score=27.60 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=46.3
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
.|.|+| .|.+|..++.++.... .+++++.. +.+...++.++ |. + ..++.+... ..
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~~--~~~~~~~~~~~----g~---~--------~~~~~~~~~----~~ 204 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLG---YTVVALTG--KEEQADYLKSL----GA---S--------EVLDREDLL----DE 204 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcC---CEEEEEeC--CHHHHHHHHhc----CC---c--------EEEcchhHH----HH
Confidence 699999 5999999888776542 45554433 22333333322 11 0 011111000 00
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCC
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGa 201 (304)
... .+...++|+|+|++|.. ..+.+..++..+.
T Consensus 205 ~~~-~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~g 237 (325)
T cd05280 205 SKK-PLLKARWAGAIDTVGGD-VLANLLKQTKYGG 237 (325)
T ss_pred HHH-HhcCCCccEEEECCchH-HHHHHHHhhcCCC
Confidence 000 01223689999999873 5566667776544
No 360
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=36.81 E-value=39 Score=27.88 Aligned_cols=106 Identities=15% Similarity=0.193 Sum_probs=50.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCc-eEEEEeCC-CCccchhhcccccc-ccccCCceEEEecCCeEEEC-CEEEEEE
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDS-GGVKNASHLLKYDS-LLGTFKADVKIVDNETISVD-GKLIKVV 162 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l-~iVaInd~-~~~~~~ayLLkyDS-~hG~f~g~v~~~~~~~L~in-Gk~I~V~ 162 (304)
.||.|.|.|.+|-.+++.|.... + ++..+.+- .+.+.+..-+-|.. .-|+...+.-. ..-..+| +-.+..+
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~G---v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~--~~l~~~np~~~v~~~ 77 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSG---VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAK--ERLQEINPDVEVEAI 77 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHT---TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHH--HHHHHHSTTSEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHhC---CCceeecCCcceeecccccccccccccchhHHHHHHH--HHHHHhcCceeeeee
Confidence 58999999999999999887532 4 33334332 23333333221221 22544322111 1001122 2233443
Q ss_pred ecCC-CCCC-CCcccCccEEEcCCCCCCChhhHHHHHH
Q 022023 163 SNRD-PLQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQ 198 (304)
Q Consensus 163 ~~~d-P~~i-dw~~~giDiVve~TG~f~~~e~a~~Hl~ 198 (304)
...- ++++ .|- .+.|+||+|+..+..+........
T Consensus 78 ~~~~~~~~~~~~~-~~~d~vi~~~d~~~~~~~l~~~~~ 114 (135)
T PF00899_consen 78 PEKIDEENIEELL-KDYDIVIDCVDSLAARLLLNEICR 114 (135)
T ss_dssp ESHCSHHHHHHHH-HTSSEEEEESSSHHHHHHHHHHHH
T ss_pred ecccccccccccc-cCCCEEEEecCCHHHHHHHHHHHH
Confidence 2211 1111 111 267999999988766555554433
No 361
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=36.78 E-value=1.2e+02 Score=28.93 Aligned_cols=30 Identities=17% Similarity=-0.005 Sum_probs=22.3
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInGf-GrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
-+|.|+|. |.||..++.++-.+. .+++++.
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~G---~~Vi~~~ 190 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLHG---CYVVGSA 190 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHcC---CEEEEEc
Confidence 47999995 999998887765542 5666654
No 362
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=36.68 E-value=67 Score=27.79 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=24.8
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|.|.| .|.||+.+++.|.++. .+++.+..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g---~~v~~~~r 37 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADG---AKVVIYDS 37 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 5799999 8999999999998763 45666654
No 363
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=36.60 E-value=1.4e+02 Score=28.12 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=22.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCc-eEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l-~iVaIn 119 (304)
.+|.|.|.|-+|..+++++.... . .++++.
T Consensus 179 ~~vlI~g~g~vG~~~~~lak~~G---~~~v~~~~ 209 (361)
T cd08231 179 DTVVVQGAGPLGLYAVAAAKLAG---ARRVIVID 209 (361)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEc
Confidence 57999999999999888776542 5 566564
No 364
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=36.49 E-value=50 Score=34.10 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=25.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.||+|+|.|.+|+.++..+... .++++.++-
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~a---G~~V~l~d~ 36 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASA---GHQVLLYDI 36 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhC---CCeEEEEeC
Confidence 5799999999999999988754 377766654
No 365
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=36.37 E-value=1.1e+02 Score=28.33 Aligned_cols=29 Identities=24% Similarity=0.155 Sum_probs=23.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCc-eEEEE
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l-~iVaI 118 (304)
-.|.|+|.|.+|..+++.+..+. + .++++
T Consensus 169 ~~vlI~g~g~vg~~~~~~a~~~g---~~~v~~~ 198 (344)
T cd08284 169 DTVAVIGCGPVGLCAVLSAQVLG---AARVFAV 198 (344)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CceEEEE
Confidence 57999999999999988877653 4 56677
No 366
>PRK07236 hypothetical protein; Provisional
Probab=36.36 E-value=61 Score=31.23 Aligned_cols=33 Identities=15% Similarity=-0.039 Sum_probs=25.3
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
++++|.|+|-|..|-.++..|..+. ++++++..
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G---~~v~v~E~ 37 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAG---WDVDVFER 37 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC---CCEEEEec
Confidence 4679999999999998888876542 66666654
No 367
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=36.06 E-value=51 Score=35.04 Aligned_cols=33 Identities=30% Similarity=0.488 Sum_probs=24.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.||+|+|+|.+|..+++.|.... ...++++++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G-~~~~V~~~d~ 36 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERG-LAREVVAVDR 36 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence 57999999999999999987642 1235555543
No 368
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=35.95 E-value=2.8e+02 Score=25.68 Aligned_cols=139 Identities=17% Similarity=0.160 Sum_probs=68.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
-.|.|.|.|.+|..+++++.... .+++++....+.++...+.++ |. . .+ +.+.-.. .+.
T Consensus 166 ~~vlI~g~g~~g~~~~~la~~~G---~~v~~~~~~~~~~~~~~~~~~----g~-~-~~----------~~~~~~~--~~~ 224 (306)
T cd08258 166 DTVVVFGPGPIGLLAAQVAKLQG---ATVVVVGTEKDEVRLDVAKEL----GA-D-AV----------NGGEEDL--AEL 224 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CEEEEECCCCCHHHHHHHHHh----CC-c-cc----------CCCcCCH--HHH
Confidence 46888999999999988877653 666666221122222222211 11 0 00 0000000 000
Q ss_pred CCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCc-ccCCCCCCceEecCCchhhhh
Q 022023 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNE-KDYDHEVANIVSNASCTTNCL 245 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~-~~~~~~~~~IISnaSCTTn~L 245 (304)
...+ ....++|+++|+.|.-...+....+++.+.+-|.+.... + .+ + .+|- ..+... ..|..+-.++...+
T Consensus 225 l~~~-~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~--~~-~--~~~~~~~~~~~-~~i~g~~~~~~~~~ 296 (306)
T cd08258 225 VNEI-TDGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFG-P--LA-A--SIDVERIIQKE-LSVIGSRSSTPASW 296 (306)
T ss_pred HHHH-cCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccC-C--CC-c--ccCHHHHhhcC-cEEEEEecCchHhH
Confidence 0000 112368999999875334455667777655334344332 1 11 1 1111 122222 46666667777777
Q ss_pred hhHHHHHHh
Q 022023 246 APFVKVMDE 254 (304)
Q Consensus 246 aPvLKvL~d 254 (304)
.-+++.+++
T Consensus 297 ~~~~~~~~~ 305 (306)
T cd08258 297 ETALRLLAS 305 (306)
T ss_pred HHHHHHHhc
Confidence 777777764
No 369
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=35.91 E-value=53 Score=29.75 Aligned_cols=31 Identities=29% Similarity=0.602 Sum_probs=23.9
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
+|.|-| +|-||+.+++.|.++. ...+++++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~-~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEH-PDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhC-CCCEEEEec
Confidence 578999 8999999999887642 236777664
No 370
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=35.90 E-value=1.5e+02 Score=27.72 Aligned_cols=30 Identities=17% Similarity=0.026 Sum_probs=22.5
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
-+|.|+| .|.+|..+++++..+. .+++++.
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~G---~~Vi~~~ 183 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLKG---CYVVGSA 183 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHcC---CEEEEEe
Confidence 5799999 5999999888776542 5666554
No 371
>PLN00198 anthocyanidin reductase; Provisional
Probab=35.89 E-value=56 Score=30.68 Aligned_cols=30 Identities=13% Similarity=0.167 Sum_probs=24.0
Q ss_pred cceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEE
Q 022023 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (304)
Q Consensus 86 ~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaI 118 (304)
..+|.|-| .|-||+.+++.|.++. .+|+++
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g---~~V~~~ 39 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKG---YAVNTT 39 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCC---CEEEEE
Confidence 36799999 9999999999998763 466543
No 372
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=35.73 E-value=47 Score=34.82 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=21.8
Q ss_pred cCcceEEEEc-CCHHHHHHHHHHHhC
Q 022023 84 VAKLKVAING-FGRIGRNFLRCWHGR 108 (304)
Q Consensus 84 ~~~ikVaInG-fGrIGR~vlR~l~~r 108 (304)
++.|||-|-| .|.||+.|.+.|.++
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~ 403 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQ 403 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhC
Confidence 3568999999 899999999998765
No 373
>PRK08163 salicylate hydroxylase; Provisional
Probab=35.67 E-value=60 Score=31.08 Aligned_cols=32 Identities=19% Similarity=0.074 Sum_probs=23.8
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
++.+|.|+|-|..|-.++.+|... .+++..+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~---g~~v~v~E 34 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQ---GIKVKLLE 34 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC---CCcEEEEe
Confidence 457999999999999888777543 25555553
No 374
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=35.55 E-value=52 Score=30.34 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=24.0
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
.+|.|-| .|-||+.+++.|.++. .+|+++.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g---~~V~~~~ 35 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG---YTVKATV 35 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC---CEEEEEE
Confidence 4799999 8999999999998763 4665543
No 375
>PLN02214 cinnamoyl-CoA reductase
Probab=35.51 E-value=69 Score=30.52 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=24.6
Q ss_pred cceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 86 ~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
.++|.|-| .|.||+.+++.|.++. .+|+++.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~ 41 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERG---YTVKGTV 41 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc---CEEEEEe
Confidence 35799999 8999999999998763 5666554
No 376
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=35.50 E-value=54 Score=33.87 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=24.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|+|+|.|.+|..++..+... .++++..+.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a---G~~V~l~D~ 38 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA---GHTVLLYDA 38 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCeEEEEeC
Confidence 4799999999999999988754 378766654
No 377
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=35.49 E-value=38 Score=32.41 Aligned_cols=22 Identities=36% Similarity=0.369 Sum_probs=19.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r 108 (304)
|||+|+|.|.+|..++..|..+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~ 22 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR 22 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4899999999999999988765
No 378
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=35.42 E-value=1.9e+02 Score=27.50 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=22.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCce-EEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~-iVaIn 119 (304)
-+|.|+|.|.+|..+++++.... .. ++++.
T Consensus 189 ~~VlI~g~g~vG~~~~~lak~~G---~~~vi~~~ 219 (367)
T cd08263 189 ETVAVIGVGGVGSSAIQLAKAFG---ASPIIAVD 219 (367)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CCeEEEEe
Confidence 46899999999999988876542 45 55554
No 379
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=35.41 E-value=61 Score=34.01 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=27.7
Q ss_pred CcceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+++||.|-| .|.||+.+++.|.++. ...+|+++..
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g-~~~~V~~~d~ 40 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNY-PDYKIVVLDK 40 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhC-CCCEEEEEeC
Confidence 457899999 9999999999998752 2467777753
No 380
>PRK07023 short chain dehydrogenase; Provisional
Probab=34.71 E-value=60 Score=28.64 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=23.5
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
++|.|.| .|.||+.+++.|.++. .+++.+.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G---~~v~~~~ 32 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG---IAVLGVA 32 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC---CEEEEEe
Confidence 4799999 8999999999988753 4555543
No 381
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=34.54 E-value=1.5e+02 Score=28.35 Aligned_cols=28 Identities=21% Similarity=0.181 Sum_probs=20.6
Q ss_pred cCccEEEcCCCCCCChhhHHHHHHcCCC
Q 022023 175 LGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (304)
Q Consensus 175 ~giDiVve~TG~f~~~e~a~~Hl~aGak 202 (304)
.++|+|+||+|.-...+.+.++++.+.+
T Consensus 253 ~~~d~vld~~g~~~~~~~~~~~l~~~G~ 280 (365)
T cd08278 253 GGVDYALDTTGVPAVIEQAVDALAPRGT 280 (365)
T ss_pred CCCcEEEECCCCcHHHHHHHHHhccCCE
Confidence 4799999999864445666777777653
No 382
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=34.50 E-value=1.6e+02 Score=27.23 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=18.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r 108 (304)
-+|.|+|.|.+|..+++++...
T Consensus 163 ~~VlI~g~g~vg~~~~~la~~~ 184 (341)
T cd08262 163 EVALVIGCGPIGLAVIAALKAR 184 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 5799999999999888776544
No 383
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=34.41 E-value=1.1e+02 Score=28.48 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=23.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|.|+|.|.+|..++..+.... +.++++..
T Consensus 167 ~~vlV~g~g~vg~~~~~~a~~~G---~~vi~~~~ 197 (345)
T cd08260 167 EWVAVHGCGGVGLSAVMIASALG---ARVIAVDI 197 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEeC
Confidence 47999999999999888776542 67766643
No 384
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=34.31 E-value=15 Score=29.36 Aligned_cols=70 Identities=20% Similarity=0.190 Sum_probs=38.3
Q ss_pred cCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcc-cCCCCCCceEecCCchhhhhhhHHHH
Q 022023 175 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEK-DYDHEVANIVSNASCTTNCLAPFVKV 251 (304)
Q Consensus 175 ~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~k~~DiP~vV~GVN~~-~~~~~~~~IISnaSCTTn~LaPvLKv 251 (304)
.++|+||||+|.-...+.+-..++.|.+-|++..++ +...+ +|.. .+..+ ..|+..-.++..-.--+++.
T Consensus 57 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~-~~~~~-----~~~~~~~~~~-~~i~g~~~~~~~~~~~~~~~ 127 (130)
T PF00107_consen 57 RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG-GDPIS-----FNLMNLMFKE-ITIRGSWGGSPEDFQEALQL 127 (130)
T ss_dssp SSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS-TSEEE-----EEHHHHHHTT-EEEEEESSGGHHHHHHHHHH
T ss_pred ccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccC-CCCCC-----CCHHHHHhCC-cEEEEEccCCHHHHHHHHHH
Confidence 489999999996555566666666666555555544 11211 1111 11222 46666666664444444443
No 385
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=33.98 E-value=68 Score=28.51 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=23.9
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
++|.|.| .|.||+.+++.|.++. .+++.+..
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G---~~V~~~~r 32 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG---HKVIATGR 32 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC---CEEEEEEC
Confidence 4688999 8999999999988753 46665543
No 386
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=33.94 E-value=1.3e+02 Score=29.49 Aligned_cols=31 Identities=29% Similarity=0.248 Sum_probs=22.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
-+|.|.|.|.||..++.++..+. .++|.+.+
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~G---a~~vi~~d 217 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLLG---AAVVIVGD 217 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CceEEEeC
Confidence 46888999999999888776542 45444444
No 387
>PLN00203 glutamyl-tRNA reductase
Probab=33.82 E-value=49 Score=34.49 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=25.6
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCc-eEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l-~iVaInd 120 (304)
..+|+|+|.|.+|+.+++.|..+. + +++++|.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G---~~~V~V~nR 298 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKG---CTKMVVVNR 298 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCC---CCeEEEEeC
Confidence 368999999999999999998753 3 5666665
No 388
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=33.79 E-value=2.2e+02 Score=26.20 Aligned_cols=91 Identities=23% Similarity=0.175 Sum_probs=47.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCce-EEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~-iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
-+|.|+|.|.+|+.+++++..+. .. ++++.. +.+....+-++ |. + ..++.+...... +
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~G---~~~v~~~~~--~~~~~~~~~~~----g~---~--------~~~~~~~~~~~~-~ 219 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLNG---ASRVTVAEP--NEEKLELAKKL----GA---T--------ETVDPSREDPEA-Q 219 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEECC--CHHHHHHHHHh----CC---e--------EEecCCCCCHHH-H
Confidence 47899999999999888776542 45 444533 22223222211 11 0 011110000000 0
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCC
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGak 202 (304)
... ...++|++|+|+|.-...+.+.++++.+.+
T Consensus 220 --~~~--~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~ 252 (334)
T cd08234 220 --KED--NPYGFDVVIEATGVPKTLEQAIEYARRGGT 252 (334)
T ss_pred --HHh--cCCCCcEEEECCCChHHHHHHHHHHhcCCE
Confidence 000 123789999999854445566678877653
No 389
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=33.71 E-value=67 Score=30.44 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r 108 (304)
|||+|.|.|.+|..+...|.+.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~ 22 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK 22 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC
Confidence 4799999999999999988754
No 390
>PRK14851 hypothetical protein; Provisional
Probab=33.64 E-value=22 Score=38.31 Aligned_cols=97 Identities=21% Similarity=0.219 Sum_probs=48.8
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC--CCccchhh-ccccccccccCCceEEEecCCeEEECC-EEEEE
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASH-LLKYDSLLGTFKADVKIVDNETISVDG-KLIKV 161 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~--~~~~~~ay-LLkyDS~hG~f~g~v~~~~~~~L~inG-k~I~V 161 (304)
..+|+|+|.|-+|-.++..|..-. +.-+.|-|. .++..+-- ++-..+.-|+.+-++- .+.-..+|- -.|.+
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~G---VG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~--~~~l~~inP~~~I~~ 117 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTG---IGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVM--KEQALSINPFLEITP 117 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhC---CCeEEEEcCCEecccccccCcCcChhhCCCHHHHHH--HHHHHHhCCCCeEEE
Confidence 358999999999999999887432 322223343 22222221 1111233355433322 111122442 23444
Q ss_pred EecC-CCCCCCCcccCccEEEcCCCCC
Q 022023 162 VSNR-DPLQLPWAELGIDIVIEGTGVF 187 (304)
Q Consensus 162 ~~~~-dP~~idw~~~giDiVve~TG~f 187 (304)
+.+. ++++++---.++|+||||+..|
T Consensus 118 ~~~~i~~~n~~~~l~~~DvVid~~D~~ 144 (679)
T PRK14851 118 FPAGINADNMDAFLDGVDVVLDGLDFF 144 (679)
T ss_pred EecCCChHHHHHHHhCCCEEEECCCCC
Confidence 4322 3333321113789999999865
No 391
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=33.60 E-value=1.4e+02 Score=27.68 Aligned_cols=31 Identities=23% Similarity=0.183 Sum_probs=23.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCce-EEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~-iVaInd 120 (304)
-+|.|+|.|.+|..+++++.... .+ ++++..
T Consensus 161 ~~vlI~g~g~~g~~~~~lA~~~G---~~~v~~~~~ 192 (343)
T cd08236 161 DTVVVIGAGTIGLLAIQWLKILG---AKRVIAVDI 192 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEEcC
Confidence 47999999999999888776542 44 666654
No 392
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.59 E-value=56 Score=32.58 Aligned_cols=21 Identities=14% Similarity=0.586 Sum_probs=19.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r 108 (304)
|+|.|.|+|+.|+.++|.|. +
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~ 21 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-K 21 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-C
Confidence 47999999999999999988 5
No 393
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=33.27 E-value=80 Score=29.17 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=17.2
Q ss_pred EEEEcC-CHHHHHHHHHHHhC
Q 022023 89 VAINGF-GRIGRNFLRCWHGR 108 (304)
Q Consensus 89 VaInGf-GrIGR~vlR~l~~r 108 (304)
|+|.|. |.+|..++..|...
T Consensus 1 I~IIGagG~vG~~ia~~l~~~ 21 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG 21 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC
Confidence 689998 99999999887754
No 394
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=33.17 E-value=71 Score=30.79 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=25.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
|+|+|+|-|-+|-..+..|..+. .+|+++...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g---~~V~vle~~ 32 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAG---HEVTVIDRQ 32 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CEEEEEeCC
Confidence 48999999999999888777642 677777653
No 395
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=33.17 E-value=78 Score=27.96 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=23.2
Q ss_pred cceEEEEcCCHH-HHHHHHHHHhCCCCCceEEEEe
Q 022023 86 KLKVAINGFGRI-GRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 86 ~ikVaInGfGrI-GR~vlR~l~~r~~~~l~iVaIn 119 (304)
..+|.|.|.|.+ |+.+++.|.++. ..+..++
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g---~~V~v~~ 75 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRN---ATVTVCH 75 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCC---CEEEEEE
Confidence 368999999985 998999988753 3554454
No 396
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=33.15 E-value=1.4e+02 Score=27.32 Aligned_cols=30 Identities=17% Similarity=0.075 Sum_probs=22.8
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
-.|.|+| .|.+|..+++++.... .+++++.
T Consensus 147 ~~vlI~g~~g~ig~~~~~~a~~~G---~~vi~~~ 177 (329)
T cd05288 147 ETVVVSAAAGAVGSVVGQIAKLLG---ARVVGIA 177 (329)
T ss_pred CEEEEecCcchHHHHHHHHHHHcC---CEEEEEe
Confidence 4789999 7999999888776542 5666664
No 397
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=33.03 E-value=69 Score=27.98 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=25.1
Q ss_pred cceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..+|.|.| .|.||+.+++.|.++. ..|+++..
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g---~~V~~~~r 38 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADG---AEVIVVDI 38 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCC---CEEEEEeC
Confidence 35799999 8999999999998763 46666643
No 398
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=33.01 E-value=47 Score=35.02 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=24.2
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..||+|+|-|..|...+..|..+. .+++.+..
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G---~~Vtv~e~ 341 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAG---VQVDVFDR 341 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcC---CcEEEEeC
Confidence 578999999999998888776542 56555543
No 399
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=32.90 E-value=1.1e+02 Score=29.16 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=18.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r 108 (304)
-+|.|+|-|.+|..++.++..+
T Consensus 185 ~~vlI~g~g~vG~~a~~~a~~~ 206 (365)
T cd05279 185 STCAVFGLGGVGLSVIMGCKAA 206 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4789999999999988876654
No 400
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=32.89 E-value=1.8e+02 Score=26.93 Aligned_cols=31 Identities=19% Similarity=0.122 Sum_probs=22.7
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
-+|.|+| -|.||..+++++-.+. .+++++..
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~G---~~Vi~~~~ 171 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLKG---CKVVGAAG 171 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHcC---CEEEEEeC
Confidence 4799999 6999999888766542 46665543
No 401
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=32.80 E-value=35 Score=30.57 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=19.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r 108 (304)
.+|.|.|.|-+|-.+++.|..-
T Consensus 20 s~VlviG~gglGsevak~L~~~ 41 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLA 41 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHc
Confidence 5799999999999999998743
No 402
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=32.32 E-value=72 Score=30.85 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=23.8
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
|..+|.|+|-|..|-.++..|..+ .++++.+..
T Consensus 1 ~~~dV~IvGaGpaGl~~A~~L~~~---G~~v~v~E~ 33 (392)
T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLA---GIDSVVLER 33 (392)
T ss_pred CcceEEEECCCHHHHHHHHHHHhc---CCCEEEEEc
Confidence 346899999999999888776543 255555543
No 403
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=32.30 E-value=2.5e+02 Score=29.58 Aligned_cols=58 Identities=26% Similarity=0.328 Sum_probs=40.0
Q ss_pred ccCCCCHHHHHHHhhccccccCCCCccccccCcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 54 GARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
..++.++.-|+..-+.+. +. . ....-.+|.|-|||-+|-...+.|.+.. =.+|+|.|.
T Consensus 226 ~ATG~GV~~y~e~~~~~~-~~--~----~~~kgkr~~i~G~Gnv~~~aa~~l~~~G---~kvvavsD~ 283 (514)
T KOG2250|consen 226 EATGRGVVYYVEAILNDA-NG--K----KGIKGKRVVIQGFGNVGGHAAKKLSEKG---AKVVAVSDS 283 (514)
T ss_pred cccchhHHHHHHHHHHhc-cC--C----CCcCceEEEEeCCCchHHHHHHHHHhcC---CEEEEEEcC
Confidence 355677888888877665 21 1 1114478999999999998888888653 366667664
No 404
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=32.27 E-value=72 Score=30.59 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=19.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r 108 (304)
+||+|+|.|.+|..++-++..+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~ 23 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK 23 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc
Confidence 4899999999999999988765
No 405
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=31.94 E-value=70 Score=29.01 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=22.9
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
||.|.| .|-||+.+++.|.++. .+++++.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g---~~V~~~~ 30 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG---HEVVVLD 30 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC---CeEEEEe
Confidence 578999 8999999999998753 5665554
No 406
>PLN02858 fructose-bisphosphate aldolase
Probab=31.81 E-value=60 Score=37.86 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=26.1
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..+||++|+|.+|..+++.|.... +++.+.|.
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G---~~V~v~dr 355 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSN---FSVCGYDV 355 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCC---CEEEEEeC
Confidence 368999999999999999998642 67776664
No 407
>PRK12320 hypothetical protein; Provisional
Probab=31.70 E-value=69 Score=34.75 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=25.4
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
|||.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G---~~Vi~ldr 32 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG---HTVSGIAQ 32 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEEeC
Confidence 4799999 8999999999998763 57777654
No 408
>PRK08219 short chain dehydrogenase; Provisional
Probab=31.66 E-value=50 Score=28.46 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=23.5
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+++.|.| .|.||+.+++.|.++ .+++++..
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~----~~V~~~~r 34 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT----HTLLLGGR 34 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh----CCEEEEeC
Confidence 5789999 899999999998865 35555643
No 409
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=31.41 E-value=88 Score=29.79 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=17.3
Q ss_pred EEEEcCCHHHHHHHHHHHhC
Q 022023 89 VAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 89 VaInGfGrIGR~vlR~l~~r 108 (304)
|+|+|.|.||-.++-+|..+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~ 20 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK 20 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc
Confidence 58999999999999877765
No 410
>PRK07454 short chain dehydrogenase; Provisional
Probab=31.14 E-value=92 Score=27.32 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=24.3
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.++.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G---~~V~~~~r 38 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAG---WDLALVAR 38 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeC
Confidence 4688899 8999999999998763 46666654
No 411
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=30.92 E-value=1.3e+02 Score=27.55 Aligned_cols=96 Identities=16% Similarity=0.116 Sum_probs=50.6
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 87 ikVaInGf-GrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
.+|.|+|- |.+|..+++++..+. .+++++... .+....+.+ +|. + -+++.+... ..
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~~~--~~~~~~~~~----~g~---~--------~v~~~~~~~---~~ 204 (326)
T cd08289 148 GPVLVTGATGGVGSLAVSILAKLG---YEVVASTGK--ADAADYLKK----LGA---K--------EVIPREELQ---EE 204 (326)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC---CeEEEEecC--HHHHHHHHH----cCC---C--------EEEcchhHH---HH
Confidence 47999995 999999888876653 566666542 122222211 111 0 011111000 00
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISA 208 (304)
.-. .+...++|+|+||+|. ...+.+..++..+..-+.+..
T Consensus 205 ~~~--~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 205 SIK--PLEKQRWAGAVDPVGG-KTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred HHH--hhccCCcCEEEECCcH-HHHHHHHHHhhcCCEEEEEee
Confidence 000 1123468999999997 455666777776553344433
No 412
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=30.76 E-value=1.1e+02 Score=29.54 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=23.3
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
...+|.|+|-|..|-.++..|..+ .+++..+.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~---G~~v~v~E 48 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDS---GLRIALIE 48 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcC---CCEEEEEe
Confidence 357899999999999888877543 24554453
No 413
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=30.74 E-value=72 Score=30.02 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.8
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r 108 (304)
.+|.|-| .|-||+.+++.|.++
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~ 24 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINE 24 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHc
Confidence 4789999 899999999999876
No 414
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=30.74 E-value=2.2e+02 Score=30.83 Aligned_cols=32 Identities=28% Similarity=0.310 Sum_probs=23.9
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
++.+|.|+|-|..|-.++-+|..+. +++.++.
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~G---i~V~V~E 111 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKG---FDVLVFE 111 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcC---CeEEEEe
Confidence 5689999999999988887776542 5555554
No 415
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=30.70 E-value=73 Score=30.78 Aligned_cols=31 Identities=23% Similarity=0.456 Sum_probs=23.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|+|+|-|..|-.++..|..+ .++++.+..
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~---G~~v~viE~ 33 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGS---GLEVLLLDG 33 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcC---CCEEEEEcC
Confidence 5799999999999888777543 267666653
No 416
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=30.52 E-value=81 Score=30.72 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=22.7
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
|+.+|.|+|-|..|-.++..|..+ .++++.+.
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~---G~~v~viE 32 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKA---GIDNVILE 32 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHC---CCCEEEEE
Confidence 457899999999999888766543 24544444
No 417
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=30.50 E-value=73 Score=30.01 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=24.4
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+|-|-| .|-||+.+++.|.++. .+|+++..
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r 32 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKG---YEVHGLIR 32 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCC---CEEEEEec
Confidence 688899 8999999999998763 57776643
No 418
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=30.19 E-value=2.1e+02 Score=28.04 Aligned_cols=34 Identities=15% Similarity=-0.077 Sum_probs=23.1
Q ss_pred cCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 022023 175 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (304)
Q Consensus 175 ~giDiVve~TG~f~~~e~a~~Hl~aGakkVIISA 208 (304)
.++|+|||++|.-.....+-..++.|...|++..
T Consensus 256 ~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 256 QGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEc
Confidence 4789999999875555666677775544455544
No 419
>PRK05086 malate dehydrogenase; Provisional
Probab=30.05 E-value=90 Score=30.09 Aligned_cols=81 Identities=20% Similarity=0.220 Sum_probs=44.4
Q ss_pred CccEEEcCCCCCCChh-----hHH----------HHH-HcCCCEEEE--eCCCCCCCCCeEEec-c--CcccCCCCCCce
Q 022023 176 GIDIVIEGTGVFVDGP-----GAG----------KHI-QAGAKKVII--TAPAKGADIPTYVVG-V--NEKDYDHEVANI 234 (304)
Q Consensus 176 giDiVve~TG~f~~~e-----~a~----------~Hl-~aGakkVII--SAp~k~~DiP~vV~G-V--N~~~~~~~~~~I 234 (304)
+.|+||-|.|.-.... .+. ..+ +.+.+.+|| |.|. |+-+.+.- . +...+. . +++
T Consensus 69 ~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~---D~~t~~~~~~~~~~sg~p-~-~rv 143 (312)
T PRK05086 69 GADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV---NTTVAIAAEVLKKAGVYD-K-NKL 143 (312)
T ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch---HHHHHHHHHHHHHhcCCC-H-HHE
Confidence 7899999999855421 011 122 235555544 4554 33222211 0 212232 2 578
Q ss_pred EecCCchhhhhhhHHHHHHhhcCceEEEEE
Q 022023 235 VSNASCTTNCLAPFVKVMDEELGIVKGAMT 264 (304)
Q Consensus 235 ISnaSCTTn~LaPvLKvL~d~fGI~~g~vT 264 (304)
|.- |+ ---+.+-..|.+.+|+..-.+.
T Consensus 144 ig~--~~-Lds~R~~~~ia~~l~~~~~~v~ 170 (312)
T PRK05086 144 FGV--TT-LDVIRSETFVAELKGKQPGEVE 170 (312)
T ss_pred Eee--ec-HHHHHHHHHHHHHhCCChhheE
Confidence 887 53 4546788889999998754443
No 420
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.86 E-value=91 Score=27.26 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=24.6
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|.|.| .|.||+.+++.|.++. .+++.+..
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G---~~V~~~~r 37 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEG---ARVVVTDR 37 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCC---CEEEEEeC
Confidence 4789999 8999999999998763 46666544
No 421
>PLN02650 dihydroflavonol-4-reductase
Probab=29.81 E-value=81 Score=29.82 Aligned_cols=30 Identities=27% Similarity=0.264 Sum_probs=24.0
Q ss_pred cceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEE
Q 022023 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (304)
Q Consensus 86 ~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaI 118 (304)
+.+|-|-| .|.||+.+++.|.++. .+|+++
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G---~~V~~~ 35 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERG---YTVRAT 35 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCC---CEEEEE
Confidence 35799999 8999999999998763 566554
No 422
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=29.49 E-value=67 Score=28.82 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=22.6
Q ss_pred EEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 89 VaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
|-|-| .|.||+.+++.|.++. .+|+++..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r 30 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG---HEVTILTR 30 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC---CEEEEEeC
Confidence 35777 8999999999998753 67776664
No 423
>PRK12827 short chain dehydrogenase; Provisional
Probab=29.40 E-value=94 Score=27.07 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=24.0
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
+++.|.| .|-||+.+++.|.++. .+++.+.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g---~~v~~~~ 37 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADG---ADVIVLD 37 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CeEEEEc
Confidence 5799999 8999999999998763 4665554
No 424
>PRK06046 alanine dehydrogenase; Validated
Probab=29.37 E-value=92 Score=30.04 Aligned_cols=34 Identities=29% Similarity=0.214 Sum_probs=27.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
..+|+|.|.|.+|+..++.+... .+++.|.|-+.
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~--~~i~~v~v~~r 162 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEV--FDLEEVRVYDR 162 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhh--CCceEEEEECC
Confidence 46899999999999999988743 34777777765
No 425
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.10 E-value=98 Score=26.93 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=23.4
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEE
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaI 118 (304)
.+|.|.| .|.||+.+++.|.++. .+++.+
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g---~~v~~~ 35 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEG---AKVVIA 35 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC---CEEEEE
Confidence 4789999 8999999999887653 566666
No 426
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=28.90 E-value=80 Score=30.57 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=26.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
+||+.+|+|..|..+++-|..+. +++.+.|..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG---~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAG---HEVTVYNRT 32 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCC---CEEEEEeCC
Confidence 47999999999999999998763 787777763
No 427
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=28.82 E-value=93 Score=32.39 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=23.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
.||+|+|.|.-|-..++.|.+.. +++++....
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g---~~~~~fE~~ 33 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEG---LEVTCFEKS 33 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT----EEEEEESS
T ss_pred CEEEEECccHHHHHHHHHHHHCC---CCCeEEecC
Confidence 58999999999999999998753 888887664
No 428
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=28.76 E-value=1e+02 Score=26.88 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=23.2
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
.+|.|.| .|.||+.+++.|.++. ..++.+.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g---~~vi~~~ 33 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDG---YRVIATY 33 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC---CEEEEEe
Confidence 4688888 8999999999998753 5665553
No 429
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=28.59 E-value=1e+02 Score=26.17 Aligned_cols=30 Identities=27% Similarity=0.254 Sum_probs=24.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 88 kVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
++.|+|.|..|+.+++.|.++ .+++++.=|
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~---g~~vvgfid 30 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS---GWEIVGFLD 30 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC---CCEEEEEEc
Confidence 478999999999999988643 478777655
No 430
>PRK09135 pteridine reductase; Provisional
Probab=28.54 E-value=1e+02 Score=26.83 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=24.3
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
.+|-|.| .|.||+.+++.|.++. .+++.+.
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g---~~v~~~~ 37 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAG---YRVAIHY 37 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC---CEEEEEc
Confidence 5799999 8999999999998763 5666664
No 431
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=28.54 E-value=64 Score=30.48 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=0.0
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
++|-|.| +|- ||.+++.|.++. .++++.-.. +. ....+.-.|..-.+.-.-
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g---~~v~~s~~t------------~~------------~~~~~~~~g~~~v~~g~l 52 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG---IEILVTVTT------------SE------------GKHLYPIHQALTVHTGAL 52 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC---CeEEEEEcc------------CC------------ccccccccCCceEEECCC
Q ss_pred CCCCC--CCcccCccEEEcCCCCC
Q 022023 166 DPLQL--PWAELGIDIVIEGTGVF 187 (304)
Q Consensus 166 dP~~i--dw~~~giDiVve~TG~f 187 (304)
+.+++ -+.+.++|+|||+|..|
T Consensus 53 ~~~~l~~~l~~~~i~~VIDAtHPf 76 (256)
T TIGR00715 53 DPQELREFLKRHSIDILVDATHPF 76 (256)
T ss_pred CHHHHHHHHHhcCCCEEEEcCCHH
No 432
>PRK06847 hypothetical protein; Provisional
Probab=28.52 E-value=96 Score=29.36 Aligned_cols=32 Identities=25% Similarity=0.069 Sum_probs=24.1
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+.+|+|+|-|..|-.++..|..+ .++++++..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~---g~~v~v~E~ 35 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA---GIAVDLVEI 35 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC---CCCEEEEec
Confidence 46899999999999888877654 256666643
No 433
>PRK07577 short chain dehydrogenase; Provisional
Probab=28.18 E-value=97 Score=26.92 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=24.0
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|.|.| .|.||+.+++.|.++. .+++.+..
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~G---~~v~~~~r 35 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANLG---HQVIGIAR 35 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCC---CEEEEEeC
Confidence 4688999 8999999999998763 56655543
No 434
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=28.18 E-value=64 Score=33.10 Aligned_cols=31 Identities=16% Similarity=0.356 Sum_probs=23.0
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEE
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaI 118 (304)
+..+|+|+|+|-||-.++-.+..+ .++++++
T Consensus 8 ~~~~I~ViGLGYVGLPlA~~fA~~---G~~ViG~ 38 (436)
T COG0677 8 MSATIGVIGLGYVGLPLAAAFASA---GFKVIGV 38 (436)
T ss_pred CceEEEEEccccccHHHHHHHHHc---CCceEeE
Confidence 447899999999998877665543 2666665
No 435
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=28.14 E-value=97 Score=27.26 Aligned_cols=31 Identities=26% Similarity=0.167 Sum_probs=23.7
Q ss_pred CcceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEE
Q 022023 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (304)
Q Consensus 85 ~~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaI 118 (304)
|+.+|.|.| .|-||+.+++.|.++. .+++.+
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g---~~v~~~ 32 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARG---WSVGIN 32 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCC---CEEEEE
Confidence 345799999 8999999999998753 455443
No 436
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=28.09 E-value=86 Score=28.85 Aligned_cols=29 Identities=24% Similarity=0.537 Sum_probs=21.7
Q ss_pred EEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 89 VaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
|-|-| .|-||+.+++.|.++. .+++++-+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g---~~~v~~~~ 31 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG---ITDILVVD 31 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC---CceEEEec
Confidence 56888 8999999999998753 45555433
No 437
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=28.05 E-value=83 Score=29.30 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=19.4
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r 108 (304)
|||-|-| .|-||+.+.+.|.++
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~ 23 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPL 23 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhcc
Confidence 4799999 899999999998865
No 438
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=27.99 E-value=91 Score=30.17 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=26.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..+|+|+|-|-+|-.++..|.++. +..+|..+..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~-~g~~V~llE~ 35 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERY-PGARIAVLEK 35 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhC-CCCeEEEEeC
Confidence 468999999999999998887652 2367767755
No 439
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.95 E-value=1e+02 Score=26.61 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=20.1
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRK 109 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~ 109 (304)
.+|.|.| .|-||+.+++.|.++.
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g 30 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAG 30 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC
Confidence 4799999 8999999999988763
No 440
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=27.94 E-value=1.1e+02 Score=28.01 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=21.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|+|+|-|..|-.++..|..+. ++++.+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G---~~v~i~E~ 32 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAG---IDVTIIER 32 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTT---CEEEEEES
T ss_pred ceEEEECCCHHHHHHHHHHHhcc---cccccchh
Confidence 58999999999999888887542 56555644
No 441
>PRK14852 hypothetical protein; Provisional
Probab=27.81 E-value=76 Score=35.89 Aligned_cols=97 Identities=20% Similarity=0.255 Sum_probs=48.0
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCC--Cccchhh--ccccccccccCCceEEEecCCeEEECC-EEEE
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG--GVKNASH--LLKYDSLLGTFKADVKIVDNETISVDG-KLIK 160 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~--~~~~~ay--LLkyDS~hG~f~g~v~~~~~~~L~inG-k~I~ 160 (304)
..||+|+|.|-+|-.++..|..-. +.-+.|-|.. ++..+-. +.. .+.-|+.+.++. ...-..+|- -.|.
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraG---VG~I~L~D~D~Ve~SNLNRQ~l~~-~~dIG~~Kaeva--a~~l~~INP~v~I~ 405 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTG---IGNFNLADFDAYSPVNLNRQYGAS-IASFGRGKLDVM--TERALSVNPFLDIR 405 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcC---CCeEEEEcCCEecccccccccCCC-hhhCCChHHHHH--HHHHHHHCCCCeEE
Confidence 468999999999999998886432 3223344431 1111111 111 122344322211 111112342 2344
Q ss_pred EEecC-CCCCCC-CcccCccEEEcCCCCCCC
Q 022023 161 VVSNR-DPLQLP-WAELGIDIVIEGTGVFVD 189 (304)
Q Consensus 161 V~~~~-dP~~id-w~~~giDiVve~TG~f~~ 189 (304)
++.+. ++++++ |- .++|+||||+..|..
T Consensus 406 ~~~~~I~~en~~~fl-~~~DiVVDa~D~~~~ 435 (989)
T PRK14852 406 SFPEGVAAETIDAFL-KDVDLLVDGIDFFAL 435 (989)
T ss_pred EEecCCCHHHHHHHh-hCCCEEEECCCCccH
Confidence 44321 233333 11 388999999987643
No 442
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=27.78 E-value=98 Score=30.79 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=25.5
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhC----CCCCceEEEEeC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGR----KDSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r----~~~~l~iVaInd 120 (304)
++++|||+|-|-||-.-+-++.+. ..+..++-++.|
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~D 41 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISD 41 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecC
Confidence 457999999999998766555552 223456666766
No 443
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=27.72 E-value=1.1e+02 Score=27.14 Aligned_cols=31 Identities=13% Similarity=0.049 Sum_probs=24.2
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|-|.| .|.||+.+++.|.++. .+++.+..
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g---~~vi~~~r 34 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEG---YRVAVADI 34 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CEEEEEEC
Confidence 4688999 8999999999998763 56666643
No 444
>PRK06753 hypothetical protein; Provisional
Probab=27.69 E-value=98 Score=29.34 Aligned_cols=30 Identities=27% Similarity=0.252 Sum_probs=22.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
+||.|+|-|..|-.++..|..+ .++++.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~---g~~v~v~E 30 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ---GHEVKVFE 30 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCcEEEEe
Confidence 4899999999999888887643 25555554
No 445
>PRK12829 short chain dehydrogenase; Provisional
Probab=27.45 E-value=1e+02 Score=27.29 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=24.3
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|.|.| .|.||+.+++.|.++. .+++.+..
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g---~~V~~~~r 43 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAG---ARVHVCDV 43 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCC---CEEEEEeC
Confidence 5799999 8999999999998763 45555543
No 446
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=27.42 E-value=1e+02 Score=30.07 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=24.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|+|.|-|..||.++..+.... ++++++..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG---~~v~~~d~ 33 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLG---YKVIVLDP 33 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CEEEEEeC
Confidence 47999999999999998877653 77777754
No 447
>PRK07588 hypothetical protein; Provisional
Probab=27.25 E-value=95 Score=29.84 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=22.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
++|+|+|-|..|..++..|..+. ++++.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G---~~v~v~E 30 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYG---HEPTLIE 30 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCC---CceEEEe
Confidence 47999999999999888876542 5555554
No 448
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=27.24 E-value=2.3e+02 Score=26.60 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=18.6
Q ss_pred cceEEEEcCCHHHHHHHHHHHhC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r 108 (304)
.-+|.|+|.|.||..++.++-.+
T Consensus 167 g~~vlI~g~g~iG~~~~~lak~~ 189 (351)
T cd08285 167 GDTVAVFGIGPVGLMAVAGARLR 189 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc
Confidence 35799999999999988877544
No 449
>PRK08223 hypothetical protein; Validated
Probab=27.20 E-value=46 Score=32.25 Aligned_cols=97 Identities=21% Similarity=0.215 Sum_probs=47.4
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC--CCccchhhcccc-ccccccCCceEEEecCCeEEECC-EEEEE
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASHLLKY-DSLLGTFKADVKIVDNETISVDG-KLIKV 161 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~--~~~~~~ayLLky-DS~hG~f~g~v~~~~~~~L~inG-k~I~V 161 (304)
.-+|.|+|.|-+|-.++..|..-. +.-+.|-|. .++..+-.-+-| .+.-|+.+.++. .+.-..+|- -.|.+
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aG---VG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a--~~~l~~iNP~v~V~~ 101 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLG---IGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVL--AEMVRDINPELEIRA 101 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhC---CCeEEEEeCCCcchhccccccCcChhHCCCcHHHHH--HHHHHHHCCCCEEEE
Confidence 357999999999999999886432 433334443 222222211111 222455432221 111112332 12333
Q ss_pred EecC-CCCCCCCcccCccEEEcCCCCC
Q 022023 162 VSNR-DPLQLPWAELGIDIVIEGTGVF 187 (304)
Q Consensus 162 ~~~~-dP~~idw~~~giDiVve~TG~f 187 (304)
+.+. ++++++.--.+.|+||||+..|
T Consensus 102 ~~~~l~~~n~~~ll~~~DlVvD~~D~~ 128 (287)
T PRK08223 102 FPEGIGKENADAFLDGVDVYVDGLDFF 128 (287)
T ss_pred EecccCccCHHHHHhCCCEEEECCCCC
Confidence 3211 2333221123789999999876
No 450
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=27.08 E-value=1e+02 Score=29.05 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=26.1
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+..+|.|+|-|-+|-.++..|.++. ++|+.|..
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g---~~V~lie~ 34 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRG---LRVLGLDR 34 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCC---CeEEEEec
Confidence 3468999999999999998887653 67766754
No 451
>PRK08244 hypothetical protein; Provisional
Probab=27.02 E-value=93 Score=31.21 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=23.4
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
..+|.|+|-|..|-.++-.|..+ .++++.|..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~---G~~v~viEr 33 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALA---GVKTCVIER 33 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC---CCcEEEEec
Confidence 36899999999999888777543 256555553
No 452
>PRK07774 short chain dehydrogenase; Provisional
Probab=26.83 E-value=1.2e+02 Score=26.66 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=24.7
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|.|.| .|-||+.+++.|.++. .+++.+..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g---~~vi~~~r 38 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREG---ASVVVADI 38 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC---CEEEEEeC
Confidence 4689999 8999999999998763 46666654
No 453
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.78 E-value=66 Score=32.17 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=25.5
Q ss_pred CccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC
Q 022023 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (304)
Q Consensus 176 giDiVve~TG~f~~~e~a~~Hl~aGakkVIISAp~ 210 (304)
..|++|||||...+.+.+-..++.|=. +++-..+
T Consensus 242 ~~d~~~dCsG~~~~~~aai~a~r~gGt-~vlvg~g 275 (354)
T KOG0024|consen 242 QPDVTFDCSGAEVTIRAAIKATRSGGT-VVLVGMG 275 (354)
T ss_pred CCCeEEEccCchHHHHHHHHHhccCCE-EEEeccC
Confidence 389999999999999988888876432 5554433
No 454
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=26.78 E-value=68 Score=31.17 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.1
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhC
Q 022023 87 LKVAINGF-GRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInGf-GrIGR~vlR~l~~r 108 (304)
+||+|.|. |.||..++-.|..+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~ 23 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN 23 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC
Confidence 58999997 99999999887754
No 455
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=26.69 E-value=1.1e+02 Score=27.60 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=22.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|+|.|||.-|+..+..|-+. .++|++-..
T Consensus 5 k~IAViGyGsQG~a~AlNLrDS---G~~V~Vglr 35 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDS---GVNVIVGLR 35 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHC---C-EEEEEE-
T ss_pred CEEEEECCChHHHHHHHHHHhC---CCCEEEEec
Confidence 5799999999999988888654 477665443
No 456
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=26.59 E-value=2.9e+02 Score=27.48 Aligned_cols=30 Identities=27% Similarity=0.353 Sum_probs=22.2
Q ss_pred eEEEEcCCHHHHH-HHHHHHhCCCCCceEEEEeCC
Q 022023 88 KVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 88 kVaInGfGrIGR~-vlR~l~~r~~~~l~iVaInd~ 121 (304)
+|-++|.|.+|.. ++|.|.++. .++. +.|.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G---~~v~-~~D~ 31 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRG---YQVS-GSDI 31 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCC---CeEE-EECC
Confidence 4678999999998 999998763 5543 4553
No 457
>PRK07024 short chain dehydrogenase; Provisional
Probab=26.59 E-value=1.2e+02 Score=27.12 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=23.3
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
.+|.|-| .|-||+.+++.|.++. .+++.+.
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G---~~v~~~~ 33 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQG---ATLGLVA 33 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC---CEEEEEe
Confidence 5788889 9999999999998753 4555554
No 458
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=26.58 E-value=1e+02 Score=30.05 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=27.2
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
|..+|+|+|-|.-|-..++.|.+.. ++++++..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G---~~VlvlEk 34 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAG---LDVLVLEK 34 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcC---CeEEEEec
Confidence 5689999999999999998887542 78777766
No 459
>PRK08177 short chain dehydrogenase; Provisional
Probab=26.50 E-value=1.1e+02 Score=26.73 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=23.8
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+|.|.| .|-||+.+++.|.++. .+|+++..
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G---~~V~~~~r 33 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERG---WQVTATVR 33 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCC---CEEEEEeC
Confidence 588999 9999999999998653 56666654
No 460
>PRK06153 hypothetical protein; Provisional
Probab=26.22 E-value=42 Score=34.03 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=30.6
Q ss_pred ccCCCCHHHHHHHhhccccccCCCCccccccCcceEEEEcCCHHHHHHHHHHHhC
Q 022023 54 GARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikVaInGfGrIGR~vlR~l~~r 108 (304)
..++.+++.|........ +. .... ..-...+|+|+|.|=+|-.++..|..-
T Consensus 148 ~~~~~svf~y~dt~s~R~-~i--~~~q-~kL~~~~VaIVG~GG~GS~Va~~LAR~ 198 (393)
T PRK06153 148 DAEEDSVFNYPDTASSRA-GI--GALS-AKLEGQRIAIIGLGGTGSYILDLVAKT 198 (393)
T ss_pred CcccCCceehhhhhcccc-Ch--HHHH-HHHhhCcEEEEcCCccHHHHHHHHHHc
Confidence 344567777766544331 11 0000 011236899999999999999988743
No 461
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=26.20 E-value=99 Score=30.02 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=22.2
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.++|+|+|-|..|-.++-+|... + ++++.|..
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-G--~~V~l~E~ 33 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-G--LDVTLLER 33 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-C--CcEEEEcc
Confidence 36899999999998877766543 2 45444443
No 462
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=26.18 E-value=1.3e+02 Score=29.19 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=18.3
Q ss_pred eEEEEcC-CHHHHHHHHHHHhC
Q 022023 88 KVAINGF-GRIGRNFLRCWHGR 108 (304)
Q Consensus 88 kVaInGf-GrIGR~vlR~l~~r 108 (304)
||+|.|. |.||..++-.|..+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~ 22 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ 22 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC
Confidence 7999997 99999998877654
No 463
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=26.18 E-value=1.2e+02 Score=26.32 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=23.8
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|.|.| .|.||+.+++.|..+. .+++.++.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g---~~V~l~~R 60 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREG---ARVVLVGR 60 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CEEEEEcC
Confidence 5899999 6999999999887642 36555553
No 464
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=26.11 E-value=1.2e+02 Score=28.70 Aligned_cols=33 Identities=30% Similarity=0.332 Sum_probs=25.7
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
++.+|+|+|-|-+|-..+..|.++. .+|+.|..
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G---~~V~vie~ 35 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERG---ADVTVLEA 35 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcC---CEEEEEec
Confidence 5679999999999988887777653 37766764
No 465
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=26.03 E-value=1.2e+02 Score=28.19 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=23.0
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEE
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaI 118 (304)
.+|.|-| .|.||+.+++.|.++. .+++++
T Consensus 6 k~vlVtG~~G~IG~~l~~~L~~~G---~~V~~~ 35 (325)
T PLN02989 6 KVVCVTGASGYIASWIVKLLLFRG---YTINAT 35 (325)
T ss_pred CEEEEECCchHHHHHHHHHHHHCC---CEEEEE
Confidence 5789999 8999999999998763 455443
No 466
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=26.00 E-value=1.1e+02 Score=29.64 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=25.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.||+|+|-|-+|...++.|.++ ..+|+++..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~---g~~V~vle~ 32 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR---GYQVTVFDR 32 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCeEEEEeC
Confidence 3899999999999999888764 267777754
No 467
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=25.95 E-value=1.1e+02 Score=29.39 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=24.4
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+..+|.|+|-|..|-.++..|..+ .++++.|..
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~---G~~v~liE~ 37 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADA---GLSVALVEG 37 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC---CCEEEEEeC
Confidence 347899999999999888777543 256665654
No 468
>PRK12828 short chain dehydrogenase; Provisional
Probab=25.94 E-value=1.1e+02 Score=26.29 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=24.0
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|.|-| .|.||+.+++.|.++. .+++.+..
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G---~~v~~~~r 39 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARG---ARVALIGR 39 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCC---CeEEEEeC
Confidence 4689999 8999999999988763 46655543
No 469
>PRK05884 short chain dehydrogenase; Provisional
Probab=25.90 E-value=1.1e+02 Score=27.12 Aligned_cols=31 Identities=6% Similarity=0.025 Sum_probs=24.0
Q ss_pred CchhhhhhhHHHHHHhhcCceEEEEEEEeec
Q 022023 239 SCTTNCLAPFVKVMDEELGIVKGAMTTTHSY 269 (304)
Q Consensus 239 SCTTn~LaPvLKvL~d~fGI~~g~vTTvHa~ 269 (304)
+.+--++.-+.+.|..+++-....+.++++-
T Consensus 141 ~asKaal~~~~~~la~e~~~~gI~v~~v~PG 171 (223)
T PRK05884 141 AAIKAALSNWTAGQAAVFGTRGITINAVACG 171 (223)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCeEEEEEecC
Confidence 4566778888889988887666788888775
No 470
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=25.76 E-value=3.5e+02 Score=25.02 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=21.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCc-eEEEEe
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l-~iVaIn 119 (304)
.+|.|.|.|-+|..+++++.... . .++++.
T Consensus 167 ~~VLI~g~g~vG~~~~~lak~~G---~~~v~~~~ 197 (339)
T cd08232 167 KRVLVTGAGPIGALVVAAARRAG---AAEIVATD 197 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEEC
Confidence 57899999999999888776542 4 455553
No 471
>PRK10083 putative oxidoreductase; Provisional
Probab=25.52 E-value=1.7e+02 Score=27.07 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=17.0
Q ss_pred ceEEEEcCCHHHHHHHHHHH
Q 022023 87 LKVAINGFGRIGRNFLRCWH 106 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~ 106 (304)
-+|.|+|-|.+|..+++.+.
T Consensus 162 ~~vlI~g~g~vG~~~~~~a~ 181 (339)
T PRK10083 162 DVALIYGAGPVGLTIVQVLK 181 (339)
T ss_pred CEEEEECCCHHHHHHHHHHH
Confidence 47999999999998887665
No 472
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=25.45 E-value=1.1e+02 Score=31.30 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=23.6
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
+..+|.|+|-|..|-.++..|..+ .++++.|.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~---G~~v~viE 53 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQ---GVPVVLLD 53 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC---CCcEEEEe
Confidence 457899999999999888777543 25555554
No 473
>PRK07074 short chain dehydrogenase; Provisional
Probab=25.45 E-value=1.2e+02 Score=26.83 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=22.6
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
++.|.| .|.||+.+++.|.++. .+++.+.
T Consensus 4 ~ilItGat~~iG~~la~~L~~~g---~~v~~~~ 33 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAAG---DRVLALD 33 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHCC---CEEEEEe
Confidence 688889 8999999999998753 4555554
No 474
>PRK08267 short chain dehydrogenase; Provisional
Probab=25.37 E-value=1.2e+02 Score=26.98 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=23.2
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
++.|.| .|.||+.+++.|.++. .+++.+.
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G---~~V~~~~ 32 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEG---WRVGAYD 32 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCC---CeEEEEe
Confidence 589999 8999999999998763 4666554
No 475
>PRK05993 short chain dehydrogenase; Provisional
Probab=25.37 E-value=1.2e+02 Score=27.59 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=24.2
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|.|.| .|-||+.+++.|.++. .+|+++..
T Consensus 5 k~vlItGasggiG~~la~~l~~~G---~~Vi~~~r 36 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDG---WRVFATCR 36 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEEC
Confidence 4689999 7999999999988753 56666543
No 476
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=25.36 E-value=1.3e+02 Score=27.35 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=25.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 88 kVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
+|+|+|-|.+|-..+..|.++. .+|+.+...
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G---~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRG---HSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTT---SEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCC---CeEEEEeec
Confidence 5899999999999999888753 677777654
No 477
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=25.36 E-value=63 Score=31.08 Aligned_cols=103 Identities=15% Similarity=0.195 Sum_probs=52.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCC--CCccchhhccccccccccCCceEEEecCCeEEECCE-EEEE--
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGK-LIKV-- 161 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~--~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk-~I~V-- 161 (304)
-+|.|.|.|=+|--.+++|....-+++.+|=..+. ..++.-.|-+. ++.|+-+-++. ++.-..||=. .|..
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~--~~iGk~Kv~vm--~eri~~InP~c~V~~~~ 106 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALL--GDIGKPKVEVM--KERIKQINPECEVTAIN 106 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhh--hhcccHHHHHH--HHHHHhhCCCceEeehH
Confidence 47999999999999999987533233443222222 23343333332 34555432222 1122223321 1111
Q ss_pred -E-ecCCCCCCCCcccCccEEEcCCCCCCChhhHHH
Q 022023 162 -V-SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGK 195 (304)
Q Consensus 162 -~-~~~dP~~idw~~~giDiVve~TG~f~~~e~a~~ 195 (304)
+ .+++.+++ -..+.||||||.-....+-.+-.
T Consensus 107 ~f~t~en~~~~--~~~~~DyvIDaiD~v~~Kv~Li~ 140 (263)
T COG1179 107 DFITEENLEDL--LSKGFDYVIDAIDSVRAKVALIA 140 (263)
T ss_pred hhhCHhHHHHH--hcCCCCEEEEchhhhHHHHHHHH
Confidence 1 11222223 23388999999887766644433
No 478
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=25.26 E-value=1.3e+02 Score=26.75 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=24.0
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
.+|.|.| .|.||+.+++.|.++. .+|+.+.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G---~~V~~~~ 41 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAG---AEVILNG 41 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcC---CEEEEEe
Confidence 4799999 8999999999998763 5666554
No 479
>PF12338 RbcS: Ribulose-1,5-bisphosphate carboxylase small subunit; InterPro: IPR024680 This domain is found in the N-terminal region of the small subunit of ribulose-1,5-bisphosphate in plants. It contains a conserved APF sequence motif. There are also two completely conserved residues (L and P) that may be functionally important.
Probab=25.24 E-value=38 Score=24.27 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=15.5
Q ss_pred cccccccCcccccccccccc
Q 022023 35 LDVAEFAGLRANAGATYATG 54 (304)
Q Consensus 35 ~~~~~~~g~~~~~~~~~~~~ 54 (304)
.-++-|.|||+..+++..++
T Consensus 22 ~mVAPFtGLKS~a~fPvtrK 41 (45)
T PF12338_consen 22 SMVAPFTGLKSTAAFPVTRK 41 (45)
T ss_pred ceeeccccccccccCccccc
Confidence 36779999999998877433
No 480
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=24.92 E-value=1e+02 Score=28.89 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=24.7
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
++|-|-| .|-||+.+++.|.++. .+|+++.
T Consensus 7 ~~vlVTGatGfiG~~l~~~L~~~G---~~V~~~~ 37 (340)
T PLN02653 7 KVALITGITGQDGSYLTEFLLSKG---YEVHGII 37 (340)
T ss_pred CEEEEECCCCccHHHHHHHHHHCC---CEEEEEe
Confidence 5799999 8999999999998763 5766664
No 481
>PLN02702 L-idonate 5-dehydrogenase
Probab=24.92 E-value=1.2e+02 Score=28.85 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=20.6
Q ss_pred CccEEEcCCCCCCChhhHHHHHHcCCC
Q 022023 176 GIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (304)
Q Consensus 176 giDiVve~TG~f~~~e~a~~Hl~aGak 202 (304)
++|+||||+|.....+.+.++++.+..
T Consensus 254 ~~d~vid~~g~~~~~~~~~~~l~~~G~ 280 (364)
T PLN02702 254 GIDVSFDCVGFNKTMSTALEATRAGGK 280 (364)
T ss_pred CCCEEEECCCCHHHHHHHHHHHhcCCE
Confidence 689999999965455667788887663
No 482
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=24.92 E-value=1.2e+02 Score=29.08 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=24.6
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+..+|.|+|-|..|-.++..|..+ .++++.|..
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~---G~~V~liE~ 36 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQH---GFSVAVLEH 36 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcC---CCEEEEEcC
Confidence 447899999999999888777543 256666654
No 483
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=24.85 E-value=74 Score=27.83 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=19.6
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r 108 (304)
++|.|.| .|-||+.+++.|.++
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~ 23 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLER 23 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHh
Confidence 3789999 899999999999876
No 484
>PRK07102 short chain dehydrogenase; Provisional
Probab=24.78 E-value=1.2e+02 Score=26.63 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=23.3
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
++|.|.| .|.||+.+++.|.++. .+|+++.
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G---~~Vi~~~ 32 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAG---ARLYLAA 32 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcC---CEEEEEe
Confidence 3688999 8999999999998753 4555554
No 485
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=24.71 E-value=1e+02 Score=29.77 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=18.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGR 108 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r 108 (304)
+||.|.|.|.||-.+.-.|...
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~ 22 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA 22 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC
Confidence 5899999999999988777654
No 486
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=24.44 E-value=1.3e+02 Score=28.56 Aligned_cols=30 Identities=20% Similarity=0.066 Sum_probs=24.4
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
++|-|-| .|-||+.+++.|.++. .+|+++.
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~G---~~V~~~~ 35 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLELG---AEVYGYS 35 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHCC---CEEEEEe
Confidence 5799999 8999999999998763 4666654
No 487
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=24.28 E-value=5e+02 Score=24.90 Aligned_cols=30 Identities=23% Similarity=0.180 Sum_probs=22.0
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEe
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaIn 119 (304)
-+|.|.| .|.||..++.++.... .+++++.
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~G---~~vv~~~ 225 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAAG---ANPVAVV 225 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC---CeEEEEe
Confidence 4799999 5999999887776542 5655553
No 488
>PRK09126 hypothetical protein; Provisional
Probab=24.14 E-value=1.2e+02 Score=29.00 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=25.1
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
|..+|.|+|-|..|-.++..|..+ .++++.+..
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~---G~~v~v~E~ 34 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGS---GLKVTLIER 34 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC---CCcEEEEeC
Confidence 457899999999998888877643 266666654
No 489
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=24.09 E-value=2.1e+02 Score=26.07 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=24.0
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~ 121 (304)
.+|.|+| .|.||..+++++.... ..++++.+.
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~G---~~v~~~~~~ 173 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAARG---INVINLVRR 173 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHHCC---CeEEEEecC
Confidence 5799998 6999999988776653 566666553
No 490
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=24.07 E-value=1.1e+02 Score=32.29 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=26.6
Q ss_pred cceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 86 ~ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.++|.|-| .|-||+.+++.|.++. ..+|+++..
T Consensus 315 ~~~VLVTGatGFIGs~Lv~~Ll~~~--g~~V~~l~r 348 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDD--NYEVYGLDI 348 (660)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC--CcEEEEEeC
Confidence 36899999 8999999999998642 368877754
No 491
>PRK06126 hypothetical protein; Provisional
Probab=24.03 E-value=1.2e+02 Score=30.85 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=24.3
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 85 ~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+..+|.|+|-|..|-.++-.|..+. ++++.+..
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G---~~v~viEr 38 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRG---VDSILVER 38 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCC---CcEEEEeC
Confidence 3478999999999998887776542 56555643
No 492
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=23.96 E-value=2.3e+02 Score=29.06 Aligned_cols=36 Identities=28% Similarity=0.295 Sum_probs=26.0
Q ss_pred cCcceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 84 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 84 ~~~ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
+.|.+++|+|-|.||-+++-.+... +.++.++--.+
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~L-G~~VTiie~~~ 206 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAAL-GSKVTVVERGD 206 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCC
Confidence 3577899999999999999887653 34455444444
No 493
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=23.93 E-value=2.2e+02 Score=29.56 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=25.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|.|.|.|-+||.++..|.+.. .+++.+|.
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G---~~V~i~nR 410 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKG---ARVVIANR 410 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CEEEEEcC
Confidence 47899999999999999998753 47776665
No 494
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=23.92 E-value=1.7e+02 Score=23.92 Aligned_cols=31 Identities=29% Similarity=0.391 Sum_probs=23.3
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.|.|.| .+.||+.+++.|.++. .-.++.+..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g--~~~v~~~~r 33 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRG--ARVVILTSR 33 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT--TEEEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHhcC--ceEEEEeee
Confidence 478899 8999999999999872 235555554
No 495
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=23.85 E-value=2.1e+02 Score=29.03 Aligned_cols=81 Identities=11% Similarity=0.037 Sum_probs=0.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecCC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~d 166 (304)
.+|+|+|.|..|-.++..|.... -++..+......+....+.. .+..+.++.....+.....
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a---~~V~l~~r~~~~~~~~~~~~---------------~~~~v~~~~~I~~~~~~g~ 266 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVA---KEVHIASRASESDTYEKLPV---------------PQNNLWMHSEIDTAHEDGS 266 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhC---CeEEEEEeeccccccccCcC---------------CCCceEECCcccceecCCe
Q ss_pred CCCCCCcccCccEEEcCCC
Q 022023 167 PLQLPWAELGIDIVIEGTG 185 (304)
Q Consensus 167 P~~idw~~~giDiVve~TG 185 (304)
..--|=+...+|.||.|||
T Consensus 267 V~f~DG~~~~~D~Ii~~TG 285 (461)
T PLN02172 267 IVFKNGKVVYADTIVHCTG 285 (461)
T ss_pred EEECCCCCccCCEEEECCc
No 496
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=23.72 E-value=1.5e+02 Score=27.45 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=23.6
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEE
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaI 118 (304)
.+|.|-| .|.||+.+++.|.++. .+|+++
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~ 35 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRG---YTVKAT 35 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CEEEEE
Confidence 5799999 9999999999998763 566644
No 497
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=23.68 E-value=3.5e+02 Score=25.30 Aligned_cols=96 Identities=16% Similarity=0.095 Sum_probs=51.8
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCCCceEEEEeCCCCccchhhccccccccccCCceEEEecCCeEEECCEEEEEEecC
Q 022023 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (304)
Q Consensus 87 ikVaInG-fGrIGR~vlR~l~~r~~~~l~iVaInd~~~~~~~ayLLkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (304)
-+|.|+| .|.+|..+++++.... ..++++... +...++-+ +|. ...+. .... .. . .
T Consensus 156 ~~vlI~ga~g~vg~~~~~~a~~~G---~~v~~~~~~---~~~~~~~~----~g~-~~v~~--------~~~~--~~-~-~ 212 (339)
T cd08249 156 KPVLIWGGSSSVGTLAIQLAKLAG---YKVITTASP---KNFDLVKS----LGA-DAVFD--------YHDP--DV-V-E 212 (339)
T ss_pred CEEEEEcChhHHHHHHHHHHHHcC---CeEEEEECc---ccHHHHHh----cCC-CEEEE--------CCCc--hH-H-H
Confidence 4799999 6999999988877653 566655432 33333311 221 00111 0000 00 0 0
Q ss_pred CCCCCCCcccCccEEEcCCCCCCChhhHHHHHHc--CCCEEEEe
Q 022023 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA--GAKKVIIT 207 (304)
Q Consensus 166 dP~~idw~~~giDiVve~TG~f~~~e~a~~Hl~a--GakkVIIS 207 (304)
...+ +...++|+|||++|.......+..+++. |.+-|.+.
T Consensus 213 ~l~~--~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g 254 (339)
T cd08249 213 DIRA--ATGGKLRYALDCISTPESAQLCAEALGRSGGGKLVSLL 254 (339)
T ss_pred HHHH--hcCCCeeEEEEeeccchHHHHHHHHHhccCCCEEEEec
Confidence 0011 1123789999999975556667778877 66444443
No 498
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=23.65 E-value=1.3e+02 Score=28.05 Aligned_cols=31 Identities=16% Similarity=0.029 Sum_probs=22.6
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCCCc-eEEEEeC
Q 022023 87 LKVAINGF-GRIGRNFLRCWHGRKDSPL-DVVVVND 120 (304)
Q Consensus 87 ikVaInGf-GrIGR~vlR~l~~r~~~~l-~iVaInd 120 (304)
.+|.|+|- |.+|..+++++..+. . +++++..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G---~~~Vi~~~~ 188 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLG---CSRVVGICG 188 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC---CCEEEEEcC
Confidence 47999994 999998887765542 4 5766643
No 499
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=23.65 E-value=4.5e+02 Score=24.30 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=23.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|.|+|.|.+|..+++++.... .+++++..
T Consensus 161 ~~vLI~g~g~vG~~a~~lA~~~g---~~v~~~~~ 191 (337)
T cd08261 161 DTVLVVGAGPIGLGVIQVAKARG---ARVIVVDI 191 (337)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEECC
Confidence 47899999999999888876542 67766643
No 500
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=23.61 E-value=1.3e+02 Score=28.80 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=24.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCCCceEEEEeC
Q 022023 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (304)
Q Consensus 87 ikVaInGfGrIGR~vlR~l~~r~~~~l~iVaInd 120 (304)
.+|+|+|-|.-|-.-++-|.++ .+++..+..
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~---g~kV~i~E~ 61 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKA---GLKVAIFER 61 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhC---CceEEEEEe
Confidence 5899999999998888888765 377666654
Done!