Query 022024
Match_columns 304
No_of_seqs 198 out of 1674
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:26:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2719 Metalloprotease [Gener 100.0 5.9E-63 1.3E-67 469.3 32.6 295 3-303 6-305 (428)
2 PRK03001 M48 family peptidase; 100.0 4.9E-28 1.1E-32 224.9 19.0 142 151-301 2-147 (283)
3 PRK03982 heat shock protein Ht 99.9 1.3E-26 2.7E-31 216.0 18.1 144 150-302 2-149 (288)
4 PRK01265 heat shock protein Ht 99.9 3.5E-24 7.7E-29 201.4 20.0 111 187-302 49-164 (324)
5 PRK01345 heat shock protein Ht 99.9 1.2E-22 2.5E-27 191.5 19.2 114 183-301 31-147 (317)
6 PRK03072 heat shock protein Ht 99.9 1.6E-22 3.4E-27 188.4 18.7 143 151-302 6-151 (288)
7 PRK02391 heat shock protein Ht 99.9 2.5E-22 5.5E-27 187.5 19.5 114 184-302 41-157 (296)
8 PRK04897 heat shock protein Ht 99.9 4.3E-22 9.4E-27 186.3 19.1 111 185-301 46-160 (298)
9 PRK02870 heat shock protein Ht 99.9 1.3E-21 2.9E-26 185.0 19.7 111 186-301 77-196 (336)
10 PRK05457 heat shock protein Ht 99.8 1.3E-19 2.8E-24 168.5 19.3 107 188-300 43-156 (284)
11 PF01435 Peptidase_M48: Peptid 99.8 8.1E-20 1.8E-24 162.8 1.4 101 192-297 6-108 (226)
12 COG0501 HtpX Zn-dependent prot 99.7 8.9E-15 1.9E-19 136.2 19.6 110 186-300 60-179 (302)
13 PF05569 Peptidase_M56: BlaR1 99.3 3.5E-11 7.7E-16 112.5 12.3 91 207-304 131-222 (299)
14 COG4783 Putative Zn-dependent 99.0 9.6E-10 2.1E-14 106.7 9.8 85 207-298 60-150 (484)
15 COG4219 MecR1 Antirepressor re 98.7 1.2E-07 2.6E-12 88.2 12.3 79 216-301 135-213 (337)
16 KOG2661 Peptidase family M48 [ 98.5 5.6E-07 1.2E-11 83.9 8.4 56 236-298 240-295 (424)
17 COG4784 Putative Zn-dependent 98.4 5.6E-07 1.2E-11 84.3 7.4 78 213-297 60-143 (479)
18 COG1451 Predicted metal-depend 97.7 0.00013 2.8E-09 65.8 7.0 72 217-297 123-194 (223)
19 PF01863 DUF45: Protein of unk 97.6 0.00011 2.4E-09 64.7 5.9 67 217-293 112-179 (205)
20 PRK04351 hypothetical protein; 97.0 0.0033 7.2E-08 53.2 8.3 71 214-289 1-72 (149)
21 PF06114 DUF955: Domain of unk 96.2 0.0084 1.8E-07 47.1 4.6 33 259-296 28-60 (122)
22 PF13699 DUF4157: Domain of un 96.1 0.014 2.9E-07 44.1 5.1 70 213-292 1-75 (79)
23 PF04228 Zn_peptidase: Putativ 96.0 0.018 4E-07 53.9 6.9 76 219-294 99-186 (292)
24 PF10026 DUF2268: Predicted Zn 95.6 0.041 8.8E-07 48.5 7.1 74 218-293 4-80 (195)
25 smart00731 SprT SprT homologue 95.6 0.031 6.8E-07 46.9 6.0 66 218-291 2-72 (146)
26 PF10263 SprT-like: SprT-like 94.6 0.18 4E-06 42.3 7.9 33 260-293 43-75 (157)
27 PF12388 Peptidase_M57: Dual-a 93.7 0.12 2.5E-06 46.2 5.1 30 258-290 116-145 (211)
28 PF04298 Zn_peptidase_2: Putat 93.7 0.46 1E-05 42.7 8.8 81 204-293 21-104 (222)
29 COG3091 SprT Zn-dependent meta 93.4 0.2 4.3E-06 42.3 5.6 68 216-290 4-73 (156)
30 PF13203 DUF2201_N: Putative m 92.9 0.21 4.5E-06 46.5 5.7 38 259-297 42-79 (292)
31 PF04450 BSP: Peptidase of pla 92.5 0.3 6.5E-06 43.5 5.9 46 247-293 61-111 (205)
32 PF12725 DUF3810: Protein of u 90.3 1.2 2.6E-05 42.3 7.9 18 274-291 192-209 (318)
33 PRK04860 hypothetical protein; 90.2 1 2.2E-05 38.5 6.6 34 258-292 44-77 (160)
34 PF08325 WLM: WLM domain; Int 89.6 0.7 1.5E-05 40.6 5.3 68 219-293 25-97 (186)
35 cd04268 ZnMc_MMP_like Zinc-dep 89.3 0.46 1E-05 39.9 3.8 32 258-290 71-106 (165)
36 COG2856 Predicted Zn peptidase 88.4 0.77 1.7E-05 41.2 4.7 28 260-292 59-86 (213)
37 PF02031 Peptidase_M7: Strepto 87.9 1.5 3.3E-05 36.1 5.7 38 248-290 52-89 (132)
38 COG4900 Predicted metallopepti 86.4 2.3 4.9E-05 34.2 5.7 72 218-290 8-92 (133)
39 TIGR02289 M3_not_pepF oligoend 85.0 0.43 9.4E-06 48.6 1.4 73 217-295 272-354 (549)
40 TIGR00181 pepF oligoendopeptid 84.5 0.61 1.3E-05 47.8 2.3 47 243-295 348-395 (591)
41 TIGR03793 TOMM_pelo TOMM prope 84.3 2.8 6.1E-05 31.4 5.2 55 215-283 15-76 (77)
42 cd04269 ZnMc_adamalysin_II_lik 83.6 2.5 5.4E-05 36.7 5.5 42 246-290 101-143 (194)
43 cd04279 ZnMc_MMP_like_1 Zinc-d 82.0 0.87 1.9E-05 38.2 1.9 16 275-290 101-116 (156)
44 PF13485 Peptidase_MA_2: Pepti 80.9 2.4 5.1E-05 33.2 4.0 34 257-294 8-41 (128)
45 cd06455 M3A_TOP Peptidase M3 T 80.6 2.8 6.1E-05 41.9 5.2 49 243-293 213-278 (472)
46 PF01432 Peptidase_M3: Peptida 80.4 1.4 3.1E-05 43.6 3.0 55 236-292 187-256 (458)
47 COG2321 Predicted metalloprote 79.2 4.9 0.00011 37.3 5.8 72 221-292 98-181 (295)
48 cd06258 Peptidase_M3_like The 78.7 4 8.7E-05 39.0 5.5 50 243-294 109-170 (365)
49 cd06459 M3B_Oligoendopeptidase 78.6 1.4 3.1E-05 42.7 2.4 46 243-294 191-238 (427)
50 cd04277 ZnMc_serralysin_like Z 78.4 4.2 9.2E-05 35.0 5.1 31 260-290 94-125 (186)
51 PF00413 Peptidase_M10: Matrix 78.0 1.1 2.3E-05 37.1 1.1 31 259-289 85-116 (154)
52 KOG2290 Rhomboid family protei 78.0 11 0.00023 37.7 8.0 44 65-126 543-586 (652)
53 cd04270 ZnMc_TACE_like Zinc-de 77.5 1.5 3.3E-05 39.9 2.0 17 274-290 163-179 (244)
54 PF14247 DUF4344: Domain of un 77.2 7.7 0.00017 35.0 6.5 42 247-290 47-104 (220)
55 PF15061 DUF4538: Domain of un 76.9 4.2 9.1E-05 28.8 3.6 44 185-236 8-51 (58)
56 cd04272 ZnMc_salivary_gland_MP 75.3 2.5 5.4E-05 37.6 2.8 40 247-290 118-157 (220)
57 PF01421 Reprolysin: Reprolysi 75.1 1.7 3.7E-05 37.9 1.7 40 248-290 103-143 (199)
58 PF01447 Peptidase_M4: Thermol 74.5 2.2 4.8E-05 36.1 2.1 40 247-290 108-147 (150)
59 PF13582 Reprolysin_3: Metallo 74.3 1.7 3.6E-05 34.7 1.3 12 279-290 108-119 (124)
60 PF05572 Peptidase_M43: Pregna 73.2 1.8 4E-05 36.6 1.3 59 236-295 19-87 (154)
61 COG1054 Predicted sulfurtransf 72.5 7.9 0.00017 36.5 5.4 43 207-255 9-52 (308)
62 PF13688 Reprolysin_5: Metallo 72.3 2.8 6E-05 36.3 2.3 17 274-290 138-154 (196)
63 cd06460 M32_Taq Peptidase fami 72.3 6.2 0.00014 38.7 4.9 73 212-293 102-174 (396)
64 KOG1047 Bifunctional leukotrie 72.1 6.1 0.00013 40.1 4.9 59 223-292 239-302 (613)
65 PF09768 Peptidase_M76: Peptid 72.0 10 0.00022 32.9 5.7 64 217-290 16-83 (173)
66 COG3864 Uncharacterized protei 72.0 4.5 9.7E-05 38.3 3.7 76 217-296 5-87 (396)
67 COG1164 Oligoendopeptidase F [ 71.6 2.2 4.7E-05 44.1 1.7 46 244-295 350-397 (598)
68 PF10463 Peptidase_U49: Peptid 71.3 2.7 5.9E-05 37.5 2.0 21 276-296 99-119 (206)
69 PF13574 Reprolysin_2: Metallo 70.8 2.2 4.7E-05 36.7 1.3 41 247-290 83-123 (173)
70 cd04278 ZnMc_MMP Zinc-dependen 70.5 2.1 4.5E-05 36.0 1.0 33 258-290 84-119 (157)
71 TIGR02290 M3_fam_3 oligoendope 70.1 2.7 5.7E-05 43.2 1.9 45 243-293 344-390 (587)
72 cd04267 ZnMc_ADAM_like Zinc-de 67.8 2.1 4.6E-05 37.0 0.6 38 248-290 106-145 (192)
73 PF01433 Peptidase_M1: Peptida 67.3 2.9 6.3E-05 40.0 1.5 69 219-293 234-310 (390)
74 TIGR02414 pepN_proteo aminopep 66.6 11 0.00025 40.6 5.9 19 275-293 280-298 (863)
75 PRK01415 hypothetical protein; 65.9 15 0.00034 33.6 5.8 44 207-256 9-53 (247)
76 COG4324 Predicted aminopeptida 65.5 4.5 9.8E-05 37.5 2.2 25 266-290 183-209 (376)
77 COG2274 SunT ABC-type bacterio 65.1 94 0.002 33.0 12.1 57 116-174 232-288 (709)
78 cd00203 ZnMc Zinc-dependent me 63.7 3 6.4E-05 34.9 0.7 16 275-290 93-108 (167)
79 PRK14015 pepN aminopeptidase N 63.4 14 0.00031 40.0 5.8 18 276-293 294-311 (875)
80 PF13583 Reprolysin_4: Metallo 62.3 20 0.00044 31.7 5.8 11 280-290 139-149 (206)
81 PF08014 DUF1704: Domain of un 61.8 16 0.00035 35.2 5.4 68 212-291 107-179 (349)
82 cd04271 ZnMc_ADAM_fungal Zinc- 61.2 3 6.5E-05 37.6 0.3 11 280-290 147-157 (228)
83 COG3590 PepO Predicted metallo 61.1 2.1 4.6E-05 43.5 -0.7 41 247-289 449-498 (654)
84 KOG3314 Ku70-binding protein [ 61.0 8.5 0.00018 33.1 2.9 38 255-295 71-108 (194)
85 COG3824 Predicted Zn-dependent 61.0 7 0.00015 31.9 2.3 31 260-290 85-121 (136)
86 PF06262 DUF1025: Possibl zinc 60.3 12 0.00025 29.4 3.4 35 259-293 49-88 (97)
87 cd06456 M3A_DCP_Oligopeptidase 60.2 9.2 0.0002 37.8 3.5 50 243-294 160-224 (422)
88 PF11694 DUF3290: Protein of u 59.9 1.1E+02 0.0023 25.9 10.7 88 150-241 15-103 (149)
89 PRK13267 archaemetzincin-like 59.7 38 0.00083 29.4 6.9 53 236-289 73-136 (179)
90 PRK05320 rhodanese superfamily 58.6 14 0.00029 34.1 4.1 44 207-256 7-51 (257)
91 PF14891 Peptidase_M91: Effect 58.3 7.4 0.00016 33.5 2.2 17 275-291 100-116 (174)
92 TIGR02412 pepN_strep_liv amino 58.2 16 0.00034 39.3 5.1 66 220-293 229-302 (831)
93 TIGR02421 QEGLA conserved hypo 57.7 19 0.00041 35.0 5.1 64 213-287 133-197 (366)
94 COG2738 Predicted Zn-dependent 55.6 1.3E+02 0.0028 26.9 9.3 63 222-293 45-107 (226)
95 smart00235 ZnMc Zinc-dependent 55.2 5.8 0.00013 32.4 1.0 12 279-290 87-98 (140)
96 COG0308 PepN Aminopeptidase N 55.2 23 0.00049 38.3 5.7 75 217-294 245-323 (859)
97 PF09471 Peptidase_M64: IgA Pe 54.1 18 0.0004 33.4 4.2 16 274-289 212-227 (264)
98 TIGR03750 conj_TIGR03750 conju 52.2 1.2E+02 0.0027 24.3 12.2 41 194-237 60-100 (111)
99 PF11990 DUF3487: Protein of u 51.2 1.3E+02 0.0029 24.4 12.1 43 191-236 60-103 (121)
100 KOG3607 Meltrins, fertilins an 50.9 13 0.00029 39.2 3.0 71 217-290 256-335 (716)
101 cd04327 ZnMc_MMP_like_3 Zinc-d 50.7 11 0.00023 33.1 2.0 15 276-290 90-104 (198)
102 cd04276 ZnMc_MMP_like_2 Zinc-d 49.6 11 0.00025 33.2 2.0 31 260-290 92-128 (197)
103 PRK09672 phage exclusion prote 47.9 13 0.00027 35.1 2.1 20 276-295 163-182 (305)
104 PF15048 OSTbeta: Organic solu 47.7 44 0.00095 27.4 4.9 63 2-67 32-95 (125)
105 COG4823 AbiF Abortive infectio 46.6 13 0.00028 34.3 1.9 14 275-288 89-102 (299)
106 cd04273 ZnMc_ADAMTS_like Zinc- 46.6 3.8 8.3E-05 36.1 -1.5 37 247-290 114-152 (207)
107 PF02074 Peptidase_M32: Carbox 46.1 55 0.0012 33.1 6.5 69 213-290 203-271 (494)
108 PF10023 DUF2265: Predicted am 45.9 12 0.00026 35.8 1.7 26 265-290 150-177 (337)
109 PF15061 DUF4538: Domain of un 44.9 17 0.00036 25.8 1.8 24 37-60 24-47 (58)
110 COG1176 PotB ABC-type spermidi 44.4 1.1E+02 0.0023 28.8 7.7 29 104-132 67-95 (287)
111 cd06161 S2P-M50_SpoIVFB SpoIVF 43.9 15 0.00032 32.6 1.8 14 277-290 37-50 (208)
112 TIGR02411 leuko_A4_hydro leuko 43.9 34 0.00073 35.5 4.7 28 262-292 266-293 (601)
113 PRK06298 type III secretion sy 43.7 3E+02 0.0065 26.6 10.9 26 216-241 231-263 (356)
114 TIGR00782 ccoP cytochrome c ox 42.6 48 0.001 30.8 5.2 24 179-202 27-50 (285)
115 COG1377 FlhB Flagellar biosynt 41.8 2.7E+02 0.0059 27.1 10.1 28 140-167 138-165 (363)
116 PF01431 Peptidase_M13: Peptid 41.3 17 0.00037 31.7 1.8 19 274-292 32-50 (206)
117 PHA00527 hypothetical protein 40.9 40 0.00086 26.8 3.6 72 200-290 9-85 (129)
118 PF14715 FixP_N: N-terminal do 40.7 44 0.00094 23.0 3.4 25 178-202 20-44 (51)
119 COG5504 Predicted Zn-dependent 40.5 18 0.00038 33.4 1.8 32 257-291 122-153 (280)
120 COG3402 Uncharacterized conser 40.4 1.5E+02 0.0032 25.4 7.2 45 158-202 25-70 (161)
121 cd06164 S2P-M50_SpoIVFB_CBS Sp 40.3 18 0.00039 32.6 1.8 15 276-290 51-65 (227)
122 PF12315 DUF3633: Protein of u 38.1 25 0.00053 31.5 2.3 19 272-291 88-106 (212)
123 PF02687 FtsX: FtsX-like perme 38.0 1.7E+02 0.0038 22.0 10.0 43 132-174 30-73 (121)
124 cd06159 S2P-M50_PDZ_Arch Uncha 37.7 20 0.00043 33.2 1.7 15 276-290 116-130 (263)
125 cd06160 S2P-M50_like_2 Unchara 37.5 21 0.00046 31.1 1.8 16 275-290 38-53 (183)
126 PF11391 DUF2798: Protein of u 37.0 1.2E+02 0.0026 21.2 5.4 35 137-175 19-53 (60)
127 COG4227 Antirestriction protei 36.9 20 0.00044 33.2 1.6 22 273-294 198-219 (316)
128 COG3930 Uncharacterized protei 36.7 44 0.00096 32.3 3.8 74 208-288 179-256 (434)
129 PF04647 AgrB: Accessory gene 36.3 2.7E+02 0.0058 23.6 14.6 21 204-224 118-138 (185)
130 cd06162 S2P-M50_PDZ_SREBP Ster 36.1 22 0.00048 33.2 1.7 14 277-290 134-147 (277)
131 PF06836 DUF1240: Protein of u 35.7 25 0.00054 27.4 1.8 26 110-135 44-69 (95)
132 TIGR03296 M6dom_TIGR03296 M6 f 35.5 9.8 0.00021 35.5 -0.7 12 278-289 165-176 (286)
133 cd04275 ZnMc_pappalysin_like Z 35.0 6 0.00013 35.7 -2.1 30 261-290 119-149 (225)
134 PF06930 DUF1282: Protein of u 34.4 2.8E+02 0.0061 23.3 12.3 25 124-149 76-100 (170)
135 PF04138 GtrA: GtrA-like prote 33.0 2.3E+02 0.0049 21.8 7.4 41 131-172 43-83 (117)
136 PRK09509 fieF ferrous iron eff 32.6 4.1E+02 0.0088 24.6 16.8 16 215-230 210-225 (299)
137 PRK12721 secretion system appa 32.5 4.6E+02 0.01 25.3 12.3 36 216-254 230-272 (349)
138 smart00793 AgrB Accessory gene 32.3 3.3E+02 0.0071 23.4 14.7 24 204-227 118-141 (184)
139 cd03082 TRX_Fd_NuoE_W_FDH_beta 32.2 1.3E+02 0.0028 21.9 5.0 51 221-283 19-70 (72)
140 PF11085 YqhR: Conserved membr 31.3 2.9E+02 0.0063 24.0 7.6 69 154-228 72-140 (173)
141 COG0772 FtsW Bacterial cell di 30.8 2.5E+02 0.0054 27.4 8.1 16 274-289 269-284 (381)
142 PF09973 DUF2208: Predicted me 30.6 4.2E+02 0.0091 24.1 10.9 25 5-29 25-49 (233)
143 PRK01530 hypothetical protein; 29.8 2.5E+02 0.0054 22.3 6.5 53 212-282 48-100 (105)
144 PRK00523 hypothetical protein; 29.2 53 0.0012 24.3 2.4 15 221-235 43-57 (72)
145 cd06457 M3A_MIP Peptidase M3 m 28.7 36 0.00077 33.9 2.0 20 272-293 244-263 (458)
146 PF06861 BALF1: BALF1 protein; 28.4 58 0.0013 28.2 2.9 25 272-296 126-150 (182)
147 PF14521 Aspzincin_M35: Lysine 28.1 92 0.002 26.0 4.1 41 249-289 66-107 (148)
148 PRK06926 flagellar motor prote 28.0 2.1E+02 0.0047 26.5 6.9 28 268-296 120-147 (271)
149 PF00356 LacI: Bacterial regul 27.6 96 0.0021 20.6 3.3 30 204-234 16-45 (46)
150 smart00361 RRM_1 RNA recogniti 27.4 1.4E+02 0.003 21.1 4.5 26 216-242 2-29 (70)
151 PRK00647 hypothetical protein; 27.3 1.6E+02 0.0035 23.0 5.0 50 211-272 35-84 (96)
152 COG3305 Predicted membrane pro 27.1 3.7E+02 0.008 22.4 7.3 28 106-133 90-117 (152)
153 COG3414 SgaB Phosphotransferas 27.0 1.8E+02 0.0039 22.5 5.2 51 218-269 17-78 (93)
154 PF01400 Astacin: Astacin (Pep 26.7 39 0.00084 29.5 1.6 12 279-290 80-91 (191)
155 COG4149 ModC ABC-type molybdat 26.5 3E+02 0.0065 24.9 7.2 118 106-237 6-134 (225)
156 PRK00523 hypothetical protein; 26.3 2.2E+02 0.0047 21.1 5.2 28 10-37 12-39 (72)
157 PRK13109 flhB flagellar biosyn 26.3 6E+02 0.013 24.6 13.7 36 216-254 239-281 (358)
158 KOG2765 Predicted membrane pro 25.8 2.4E+02 0.0052 27.7 6.8 49 106-154 277-335 (416)
159 KOG1046 Puromycin-sensitive am 25.7 40 0.00086 36.6 1.8 20 275-294 321-340 (882)
160 cd04283 ZnMc_hatching_enzyme Z 25.6 33 0.00071 30.0 0.9 12 279-290 78-89 (182)
161 KOG3624 M13 family peptidase [ 25.4 38 0.00082 35.5 1.5 41 247-290 480-530 (687)
162 COG3763 Uncharacterized protei 25.4 2.6E+02 0.0055 20.7 5.3 27 11-37 12-38 (71)
163 PF10460 Peptidase_M30: Peptid 25.2 53 0.0012 31.9 2.4 18 274-291 135-152 (366)
164 PF01402 RHH_1: Ribbon-helix-h 25.1 71 0.0015 19.8 2.3 19 216-234 7-25 (39)
165 PRK01844 hypothetical protein; 24.9 2.3E+02 0.005 21.0 5.1 29 9-37 10-38 (72)
166 cd04281 ZnMc_BMP1_TLD Zinc-dep 24.8 34 0.00074 30.3 0.9 12 279-290 88-99 (200)
167 PF13829 DUF4191: Domain of un 24.5 5.3E+02 0.012 23.3 12.4 57 216-285 87-143 (224)
168 COG0555 CysU ABC-type sulfate 24.3 5.9E+02 0.013 23.8 12.5 22 217-238 163-184 (274)
169 PF11698 V-ATPase_H_C: V-ATPas 23.8 47 0.001 27.0 1.5 27 274-300 56-82 (119)
170 PRK10911 oligopeptidase A; Pro 23.7 48 0.001 34.9 1.9 20 274-294 460-479 (680)
171 PRK05702 flhB flagellar biosyn 23.5 6.8E+02 0.015 24.2 13.9 26 216-241 237-269 (359)
172 PF10256 Erf4: Golgin subfamil 23.3 2.4E+02 0.0051 22.3 5.5 21 34-54 20-40 (118)
173 PRK06719 precorrin-2 dehydroge 22.5 3.2E+02 0.007 22.8 6.5 70 215-293 79-155 (157)
174 PF10462 Peptidase_M66: Peptid 22.3 45 0.00098 31.6 1.3 13 278-290 193-205 (305)
175 PF14804 Jag_N: Jag N-terminus 22.2 1.5E+02 0.0033 20.3 3.6 40 217-262 5-46 (52)
176 cd02646 R3H_G-patch R3H domain 22.1 1.8E+02 0.004 20.0 4.1 38 210-265 20-57 (58)
177 PF05548 Peptidase_M11: Gameto 21.9 44 0.00096 31.7 1.1 24 219-242 93-122 (314)
178 PF03820 Mtc: Tricarboxylate c 21.7 3.8E+02 0.0082 25.4 7.3 45 194-239 260-304 (308)
179 cd04280 ZnMc_astacin_like Zinc 21.7 41 0.00089 29.0 0.8 12 279-290 75-86 (180)
180 COG3763 Uncharacterized protei 21.6 98 0.0021 22.8 2.6 24 208-235 33-56 (71)
181 KOG3714 Meprin A metalloprotea 21.1 42 0.00091 33.0 0.8 12 279-290 160-171 (411)
182 PRK09109 motC flagellar motor 21.0 4.5E+02 0.0098 23.9 7.5 27 270-297 117-143 (246)
183 PF12651 RHH_3: Ribbon-helix-h 20.9 1E+02 0.0022 20.3 2.4 21 216-236 10-30 (44)
184 PF13994 PgaD: PgaD-like prote 20.7 4.8E+02 0.01 21.4 7.0 23 155-177 24-46 (138)
185 KOG3769 Ribonuclease III domai 20.6 1.1E+02 0.0024 28.9 3.4 66 193-260 208-275 (333)
186 PF06923 GutM: Glucitol operon 20.5 1E+02 0.0022 24.5 2.8 25 8-32 3-27 (109)
187 PF04505 Dispanin: Interferon- 20.5 61 0.0013 24.4 1.4 30 45-74 49-78 (82)
188 PF13402 M60-like: Peptidase M 20.4 49 0.0011 30.6 1.1 40 249-293 191-234 (307)
189 PF03672 UPF0154: Uncharacteri 20.4 2.6E+02 0.0057 20.2 4.6 28 10-37 4-31 (64)
190 PF01098 FTSW_RODA_SPOVE: Cell 20.3 65 0.0014 30.8 2.0 20 269-289 249-268 (358)
191 COG3641 PfoR Predicted membran 20.3 7.5E+02 0.016 23.8 8.8 42 140-181 3-44 (348)
192 PRK05988 formate dehydrogenase 20.3 1.7E+02 0.0037 24.8 4.3 55 220-283 92-152 (156)
193 PF15639 Tox-MPTase3: Metallop 20.1 1.6E+02 0.0035 24.3 3.8 58 235-294 50-116 (135)
194 PF06181 DUF989: Protein of un 20.0 2.7E+02 0.0059 26.2 5.8 77 113-199 222-298 (300)
No 1
>KOG2719 consensus Metalloprotease [General function prediction only]
Probab=100.00 E-value=5.9e-63 Score=469.32 Aligned_cols=295 Identities=53% Similarity=0.896 Sum_probs=283.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CChhhcccCCHHHHHHHHHhhhhhhhHHHHHHHHHH-HHHHHHHHh
Q 022024 3 FPYMEAVVGFMILMYFFETYLDLRQHAALKLPK-LPKTLEGVISQEKFEKSRGYSLDKSHFHFVHEFVTI-LMDSAILLF 80 (304)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~~L~~rq~~~~~~~~-~P~~l~~~~~~e~~~k~~~Y~~~k~~~~~~~~~~~~-~~~~~~l~~ 80 (304)
++|+.+++++++..+.||+||+.||.+++++++ +|+++++.+|+|+++|||+|+++|.++++++...+. ...+..+++
T Consensus 6 ~~~~~~i~~f~i~~~~~~~yl~~Rq~~~~~~~~~~p~el~~~~~~et~~kar~y~~~k~~f~i~~~~~~~~~~~l~~L~~ 85 (428)
T KOG2719|consen 6 MCRKSIILFFSIFLYLFETYLTERQLKVLKRTKLVPKELGGIIDQETFKKARSYERDKSIFSIFNLLLSLVLLLLLELYL 85 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchHhhcCCCHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999998875 899999999999999999999999999999999999 899999999
Q ss_pred chHHHHHhhhhhHHHHhccCCccchhHHHHHHHHHHHHHHhchhchhhhhhceeecccCCCCCCHHHHHHHHHHHHHHHH
Q 022024 81 RILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAI 160 (304)
Q Consensus 81 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~~l~~lPf~~Y~~f~le~~~g~~~~t~~~~~~d~~k~~~l~~ 160 (304)
|.+|++|..++++..+. .+++++++|+..++.+++++++|+++|++|++|++||+|++|.+.|++|.+|+.++++
T Consensus 86 g~~~~lw~lt~~~~~~~-----~~~~~s~vF~~~~s~~~~l~~LP~~iys~fvie~~~gfnk~t~~~~~~d~lk~~~v~~ 160 (428)
T KOG2719|consen 86 GALPFLWKLTGKFLGKA-----GEIWLSLVFLLLLSIYSTLLDLPSSIYSTFVLEEKHGFNKQTLSLFIIDGLKSLLVGV 160 (428)
T ss_pred hHHHHHHHHHHHHhhhh-----hhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHHhhcCCCcCcchhHHHHHHHHHHHHH
Confidence 99999999998887663 3889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHhHHHHHhhcCCCCCCCchHHHHHHHHHHHHcCCCCCcEEEE
Q 022024 161 VLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV 240 (304)
Q Consensus 161 vl~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~i~plf~~~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~ 240 (304)
+++.|+.+++.++....|+++.+|+|++.++++++++.++|.+|.|+++|++|++++++++.||++|++.|+|.++++|+
T Consensus 161 ~l~~Pi~~~iv~i~~~~g~yF~i~~w~f~~v~~l~l~ti~p~~i~P~f~K~~PLe~g~l~~~Ie~la~s~gfp~~k~~vi 240 (428)
T KOG2719|consen 161 VLTIPIVAAIVMILKKFGPYFFIYLWLFYFVLSLLLLTIYPGFIAPLFGKFTPLEEGDLKEKIERLADSVGFPLSKYRVI 240 (428)
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCchHHHHHHHHHhcCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCcccEEEEccCCCCEEEEcHhHHh-h--CCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 022024 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQ-Q--CKNDEEIVAVIAHELGHWKLNHTMYSFIAVQV 303 (304)
Q Consensus 241 ~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~-~--l~~~~El~aVlaHElgH~k~~H~~~~~~~~~~ 303 (304)
|+|+|++|+|||++|+|+.||||++||++. + + ++||+.||+|||+|||+++|..|+++++++
T Consensus 241 ~~s~rs~hsNAyfyG~~~~KRIvIyDtLl~~~~~~-~~eel~AVl~HELGHW~~~H~~K~~ii~~~ 305 (428)
T KOG2719|consen 241 DGSKRSSHSNAYFYGLCKNKRIVIYDTLLLEEEHL-NNEELVAVLAHELGHWKLNHVLKNIIIMQI 305 (428)
T ss_pred ecCCCCCCCCeeeeeccccceEEEehhhhhhhhcc-ccHHHHHHHHHHhhHHHHhhHHHHHHHHHH
Confidence 999999999999999999999999999993 2 4 789999999999999999999999999875
No 2
>PRK03001 M48 family peptidase; Provisional
Probab=99.96 E-value=4.9e-28 Score=224.90 Aligned_cols=142 Identities=18% Similarity=0.292 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHhHHHHHhhcCCCCCCCc---hHHHHHHHHHH
Q 022024 151 DMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPE---GELREKIEKLA 227 (304)
Q Consensus 151 d~~k~~~l~~vl~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~i~plf~~~~pl~~---~~L~~~i~~l~ 227 (304)
|.+|+.++..+++++++.+.+++. +..+|+++|++.++++++.++++|.++.|++|+ +|+++ |++++.++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~~~~p~L~~~v~~la 77 (283)
T PRK03001 2 NWVKTAMLMAAITALFIVIGGMIG---GSQGMLIALLFALGMNFFSYWFSDKMVLKMYNA-QEVDENTAPQFYRMVRELA 77 (283)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh---chhhHHHHHHHHHHHHHHHHHHhHHHHHHHcCC-EECCccccHHHHHHHHHHH
Confidence 678999999999999888888876 455688999999999999999999999999987 78876 69999999999
Q ss_pred HHcCCCCCcEEEEeCCCCCCcccEEEEccCCC-CEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 022024 228 SSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKN-KRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAV 301 (304)
Q Consensus 228 ~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~-k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H~~~~~~~~ 301 (304)
++.|+|.|++|++|+ +++|||++|.+++ ++|+++|++++.+ ++||++||+|||+||+||+|+.++.+.+
T Consensus 78 ~~~g~~~p~v~v~~~----~~~NAfa~G~~~~~~~Ivvt~gLl~~l-~~~El~aVlAHElgHi~~~h~~~~~~~~ 147 (283)
T PRK03001 78 QRAGLPMPKVYLINE----DQPNAFATGRNPEHAAVAATTGILRVL-SEREIRGVMAHELAHVKHRDILISTISA 147 (283)
T ss_pred HHcCCCCCeEEEecC----CCcceEEecCCCCCeEEEecHHHHhhC-CHHHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 999999999999996 4799999998754 5799999999999 9999999999999999999999997654
No 3
>PRK03982 heat shock protein HtpX; Provisional
Probab=99.95 E-value=1.3e-26 Score=215.96 Aligned_cols=144 Identities=23% Similarity=0.276 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHhHHHHHhhcCCCCCC---CchHHHHHHHHH
Q 022024 150 RDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPL---PEGELREKIEKL 226 (304)
Q Consensus 150 ~d~~k~~~l~~vl~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~i~plf~~~~pl---~~~~L~~~i~~l 226 (304)
.|.+|+.++..+++++++.+.+.. .|..||++++++++++.++ .+.+|..+.|.+++++|+ ++|++++.++++
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~l~~~~~p~L~~~v~~l 77 (288)
T PRK03982 2 MNQLKTGLLMALLTGLLYAIGYLL---GGSIGPIIAILLALIPNLI-SYYYSDKIVLASYNARIVSEEEAPELYRIVERL 77 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH---hchhHHHHHHHHHHHHHHH-HHHHhHHHHHHhcCCEECChhhhHHHHHHHHHH
Confidence 478899888888887777666533 3677888888888877777 566777889999999999 467899999999
Q ss_pred HHHcCCCCCcEEEEeCCCCCCcccEEEEccCC-CCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 022024 227 ASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQ 302 (304)
Q Consensus 227 ~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~-~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H~~~~~~~~~ 302 (304)
|++.|+|.+++|++|+ +.+|||++|.++ ++.|+++|+|++.+ ++||++||+|||+||+||+|..++.+.+.
T Consensus 78 a~~~g~~~p~v~v~~~----~~~NAfa~G~~~~~~~V~vt~gLl~~l-~~~El~AVlAHElgHi~~~h~~~~~~~~~ 149 (288)
T PRK03982 78 AERANIPKPKVAIVPT----QTPNAFATGRDPKHAVVAVTEGILNLL-NEDELEGVIAHELTHIKNRDTLIQTIAAT 149 (288)
T ss_pred HHHcCCCCCeEEEEeC----CCcceEEeccCCCCeEEEeehHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999986 379999999876 55677999999999 99999999999999999999999887643
No 4
>PRK01265 heat shock protein HtpX; Provisional
Probab=99.92 E-value=3.5e-24 Score=201.41 Aligned_cols=111 Identities=28% Similarity=0.406 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhHhHHHHHhhcC--CCCCCC--chHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEccC-CCCE
Q 022024 187 AFMFVLSLVMMTLYPVLIAPLFN--KFTPLP--EGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFF-KNKR 261 (304)
Q Consensus 187 ~~~~~~~~~~~~~~p~~i~plf~--~~~pl~--~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~-~~k~ 261 (304)
++++++.++.++++|.++.|+++ +.+|.+ +|+|++.++++|++.|+|.|++|++|++ .+|||++|.+ ++++
T Consensus 49 ~~~~~~~~~~~~~sp~li~~~~~a~~~~p~~~~~~~L~~~v~~la~~~g~~~p~vyv~~~~----~~NAfa~G~~~~~~~ 124 (324)
T PRK01265 49 IFVFFLNIIQWLFGPYMINAAYRTVEVTPTDPVYGWLYSIVAEVAKYNGIRVPKVYIADVP----FPNAFAYGSPIAGKR 124 (324)
T ss_pred HHHHHHHHHHHHHhHHHHHHHcCCeeCCCCCcccHHHHHHHHHHHHHcCCCCCeEEEecCC----CCCeEEeccCCCCCE
Confidence 34556678889999999999997 888987 7899999999999999999999999974 5999999986 5799
Q ss_pred EEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 022024 262 IVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQ 302 (304)
Q Consensus 262 Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H~~~~~~~~~ 302 (304)
|+++|++++.+ ++||++||+|||+||+||+|+.++++++.
T Consensus 125 Ivvt~gLl~~l-~~~El~aVlAHElgHik~~d~~~~~~~~~ 164 (324)
T PRK01265 125 IAITLPLLKIL-NRDEIKAVAGHELGHLKHRDVELLMAIGL 164 (324)
T ss_pred EEEehHHHhhC-CHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 99999999999 99999999999999999999999987654
No 5
>PRK01345 heat shock protein HtpX; Provisional
Probab=99.90 E-value=1.2e-22 Score=191.46 Aligned_cols=114 Identities=22% Similarity=0.316 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHhhcCC--CCCCCchHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEccCC-C
Q 022024 183 IYLWAFMFVLSLVMMTLYPVLIAPLFNK--FTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-N 259 (304)
Q Consensus 183 l~~~~~~~~~~~~~~~~~p~~i~plf~~--~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~-~ 259 (304)
+...++.+++.++.++..|.++.+.++. .+|.++|++++.++++|++.|+|.+++|++|+ +++|||++|.++ +
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~~p~L~~~v~~La~~agi~~p~v~vid~----~~~NAFa~G~~~~~ 106 (317)
T PRK01345 31 MIALVIAAGMNLFSYWNSDKMVLRMYGAQEVDERSAPELYRMVRDLARRAGLPMPKVYIIDN----PQPNAFATGRNPEN 106 (317)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHcCCeECCcccCHHHHHHHHHHHHHcCCCCCcEEEEcC----CCcceEEecCCCCC
Confidence 3344566667788888899999998875 67778899999999999999999999999996 479999999854 6
Q ss_pred CEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 022024 260 KRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAV 301 (304)
Q Consensus 260 k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H~~~~~~~~ 301 (304)
++|+++++|++.+ ++||++||+|||+||++|+|..++.+++
T Consensus 107 ~~V~vt~gLL~~L-~~dEL~aVlAHElgHi~~~d~~~~~l~~ 147 (317)
T PRK01345 107 AAVAATTGLLQRL-SPEEVAGVMAHELAHVKNRDTLTMTITA 147 (317)
T ss_pred eEEEechHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7899999999999 9999999999999999999999987754
No 6
>PRK03072 heat shock protein HtpX; Provisional
Probab=99.90 E-value=1.6e-22 Score=188.36 Aligned_cols=143 Identities=16% Similarity=0.162 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHhHHHHHhhcC--CCCCCCchHHHHHHHHHHH
Q 022024 151 DMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFN--KFTPLPEGELREKIEKLAS 228 (304)
Q Consensus 151 d~~k~~~l~~vl~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~i~plf~--~~~pl~~~~L~~~i~~l~~ 228 (304)
+.+++.++-..+.+.++.+. |++ |....+++.++.+++.++.++..|.++....+ ..+|.++|+|++.++++|+
T Consensus 6 ~~~~t~~l~~~~~~~~~~~g-~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~~~p~L~~~v~~la~ 81 (288)
T PRK03072 6 NGLKTALLLGGMSALIVFIG-ALF---GRTGLGIAVLIAVGMNAYVYWNSDKLALRAMHAQPVSEVQAPAMYRIVRELST 81 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCEECChhhhHHHHHHHHHHHH
Confidence 34555554444444433332 232 23333444556666677778888877766654 3466778999999999999
Q ss_pred HcCCCCCcEEEEeCCCCCCcccEEEEccCC-CCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 022024 229 SLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQ 302 (304)
Q Consensus 229 ~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~-~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H~~~~~~~~~ 302 (304)
+.|+|.|++|++|+ +.+|||++|..+ ...|+++|++++.+ ++||++||+|||+||+||+|+.++.+++.
T Consensus 82 ~~g~p~p~vyv~~~----~~~NAFa~G~~~~~~~v~vt~gLl~~l-~~~El~aVlAHElgHi~~~d~~~~~~~~~ 151 (288)
T PRK03072 82 AARQPMPRLYISPT----AAPNAFATGRNPRNAAVCCTEGILQIL-NERELRGVLGHELSHVYNRDILISSVAGA 151 (288)
T ss_pred HcCCCCCCEEEecC----CCCceEEecCCCCCcEEEecHHHHHhC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999996 469999999643 44699999999999 99999999999999999999999987653
No 7
>PRK02391 heat shock protein HtpX; Provisional
Probab=99.90 E-value=2.5e-22 Score=187.49 Aligned_cols=114 Identities=22% Similarity=0.202 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHhhcC--CCCCCCchHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEccCC-CC
Q 022024 184 YLWAFMFVLSLVMMTLYPVLIAPLFN--KFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-NK 260 (304)
Q Consensus 184 ~~~~~~~~~~~~~~~~~p~~i~plf~--~~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~-~k 260 (304)
.+.++++++.++.++..|.++....+ +.+|.++|++++.++++|++.|+|.|++|++|+ +++|||++|.++ ++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~~v~~la~~~~~~~p~v~v~~~----~~~NAfa~G~~~~~~ 116 (296)
T PRK02391 41 LIVVIAGGFLLAQYFFSDKLALWSMGARIVSEDEYPELHAMVERLCALADLPKPRVAVADS----DVPNAFATGRSPKNA 116 (296)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHcCCEECChhhCHHHHHHHHHHHHHcCCCCCcEEEEeC----CCCceEEecCCCCCc
Confidence 34455566677778888887766554 567778899999999999999999999999995 589999999864 56
Q ss_pred EEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 022024 261 RIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQ 302 (304)
Q Consensus 261 ~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H~~~~~~~~~ 302 (304)
.|+++|++++.+ ++||++||+|||+||+||+|+.++.+++.
T Consensus 117 ~V~vt~gLl~~L-~~~El~aVlaHElgHi~~~di~~~~i~~~ 157 (296)
T PRK02391 117 VVCVTTGLMRRL-DPDELEAVLAHELSHVKNRDVAVMTIASF 157 (296)
T ss_pred EEEecHHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 688999999999 99999999999999999999999887653
No 8
>PRK04897 heat shock protein HtpX; Provisional
Probab=99.89 E-value=4.3e-22 Score=186.27 Aligned_cols=111 Identities=24% Similarity=0.360 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHhHhHHHHHhhcCCCCCC---CchHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEccCC-CC
Q 022024 185 LWAFMFVLSLVMMTLYPVLIAPLFNKFTPL---PEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-NK 260 (304)
Q Consensus 185 ~~~~~~~~~~~~~~~~p~~i~plf~~~~pl---~~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~-~k 260 (304)
+.++++++.++.++..|.++. ..++.+|+ ++|+|++.++++|++.|+|.|++|++|++ .+|||++|.++ ++
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~-~~~~a~~v~~~~~p~L~~~v~~la~~~gip~p~v~v~~~~----~~NAfa~G~~~~~~ 120 (298)
T PRK04897 46 ALIIGVIYALIMIFQSTNVVM-SMNHAREVTEEEAPELWHIVEDMAMVAQIPMPRVFIIDDP----SPNAFATGSSPKNA 120 (298)
T ss_pred HHHHHHHHHHHHHHhhHHHHH-HhCCCEECChhhhHHHHHHHHHHHHHcCCCCCcEEEecCC----CCceEEeccCCCCc
Confidence 334455556666666666554 45568887 56899999999999999999999999863 69999999875 55
Q ss_pred EEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 022024 261 RIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAV 301 (304)
Q Consensus 261 ~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H~~~~~~~~ 301 (304)
.|++++++++.+ ++||++||+|||+||+||+|+.++++.+
T Consensus 121 ~v~vt~gLl~~l-~~~El~aVlAHElgHi~~~d~~~~~~~~ 160 (298)
T PRK04897 121 AVAVTTGLLAIM-NREELEGVIGHEISHIRNYDIRLSTIAV 160 (298)
T ss_pred EEEeehHHHhhC-CHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 699999999999 9999999999999999999999888654
No 9
>PRK02870 heat shock protein HtpX; Provisional
Probab=99.88 E-value=1.3e-21 Score=185.01 Aligned_cols=111 Identities=20% Similarity=0.321 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHhHhHHHHHhhcC-------CCCCCCchHHHHHHHHHHHHcCCC-CCcEEEEeCCCCCCcccEEEEccC
Q 022024 186 WAFMFVLSLVMMTLYPVLIAPLFN-------KFTPLPEGELREKIEKLASSLKFP-LKKLFVVDGSTRSSHSNAYMYGFF 257 (304)
Q Consensus 186 ~~~~~~~~~~~~~~~p~~i~plf~-------~~~pl~~~~L~~~i~~l~~~~g~~-~~~i~v~~~s~rs~~~NA~~~G~~ 257 (304)
.+++++..++.++..+.+.....+ +..|.++++|++.++++|++.|+| .|++|++|++ ++|||++|.+
T Consensus 77 ~~~~~~~~~~~y~~~~~~~l~~~~a~~I~~~~~~p~~~~~L~~~ve~La~~ag~p~~p~V~vi~~~----~~NAFA~G~~ 152 (336)
T PRK02870 77 SLVAVISILVTFQNFDKIMLSGTEYKEITPENALSLQERQLYNVVEELLVAAGLRFMPKVYIIDAP----YMNAFASGYS 152 (336)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcCCEEcCCCCCCchhhHHHHHHHHHHHHHcCCCCCCeEEEEcCC----CCceEEecCC
Confidence 345556667777777776666543 455666789999999999999999 7999999874 7999999986
Q ss_pred -CCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 022024 258 -KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAV 301 (304)
Q Consensus 258 -~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H~~~~~~~~ 301 (304)
++++|+++|++++.+ ++||++||+|||+||++|+|+.++++.+
T Consensus 153 ~~~~~Ivvt~GLL~~L-~~dEL~aVlAHELgHik~~di~~~~~~~ 196 (336)
T PRK02870 153 EKSAMVAITTGLLEKL-DRDELQAVMAHELSHIRHGDIRLTLCVG 196 (336)
T ss_pred CCCcEEEEehHHhhhC-CHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 478999999999999 9999999999999999999998886654
No 10
>PRK05457 heat shock protein HtpX; Provisional
Probab=99.84 E-value=1.3e-19 Score=168.45 Aligned_cols=107 Identities=20% Similarity=0.222 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhHhHHHHHhhcCCCCCC----Cch--HHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEccCCC-C
Q 022024 188 FMFVLSLVMMTLYPVLIAPLFNKFTPL----PEG--ELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKN-K 260 (304)
Q Consensus 188 ~~~~~~~~~~~~~p~~i~plf~~~~pl----~~~--~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~-k 260 (304)
+.++..++.++..|.+....+ +.+++ +++ .+++.++++|++.|+|.|++|++|+ +++|||++|.+++ +
T Consensus 43 ~~~~~~~~~~~~~~~i~~~~~-~a~~i~~~~~~~~~~L~~~v~~la~~~g~p~p~v~v~~~----~~~NAfa~G~~~~~~ 117 (284)
T PRK05457 43 FGFGGSFISLLMSKWMAKRST-GAEVIEQPRNETERWLVETVARQARQAGIGMPEVAIYHS----PEINAFATGASKNNS 117 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCeECCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEeC----CCceEEEecCCCCCe
Confidence 334445666777787766555 34444 233 4999999999999999999999996 4799999998754 4
Q ss_pred EEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCCHHHHHHH
Q 022024 261 RIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIA 300 (304)
Q Consensus 261 ~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H~~~~~~~ 300 (304)
.|++++++++.+ |+||++||+|||+||++|+|+.++.++
T Consensus 118 ~V~vt~gLl~~L-~~~El~aVlAHElgHi~~~d~~~~~l~ 156 (284)
T PRK05457 118 LVAVSTGLLQNM-SRDEVEAVLAHEISHIANGDMVTMTLI 156 (284)
T ss_pred EEEeehHHhhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 577999999999 999999999999999999999987544
No 11
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=99.76 E-value=8.1e-20 Score=162.76 Aligned_cols=101 Identities=44% Similarity=0.681 Sum_probs=82.7
Q ss_pred HHHHHHhHhHHHHHhhcCCCCCCCchHHHHHHHHHHHHc--CCCCCcEEEEeCCCCCCcccEEEEccCCCCEEEEcHhHH
Q 022024 192 LSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSL--KFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLI 269 (304)
Q Consensus 192 ~~~~~~~~~p~~i~plf~~~~pl~~~~L~~~i~~l~~~~--g~~~~~i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll 269 (304)
.+..+..+++.++.+++++.+|.++++|++.+++++++. +.|.+++++++++ ..|||++|.+++++|+++++++
T Consensus 6 ~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~v~~l~~~~~~~~~~~~v~v~~~~----~~NA~~~g~~~~~~I~v~~~ll 81 (226)
T PF01435_consen 6 VSLLLAFIGPPLIAPLFNKFTPLEDPELRRIVEELARRAGLGIPPPRVYVIDSP----SPNAFATGGGPRKRIVVTSGLL 81 (226)
T ss_dssp TTSTTGHHCCCCHCCHCTC--B-HHHHHHHHHHHHHHHHHCTSS--EEEEE--S----SEEEEEETTTC--EEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCCCCCeEEEEcCC----CCcEEEEccCCCcEEEEeChhh
Confidence 334455667778899999999999999999999999999 8888899999974 4999999998889999999999
Q ss_pred hhCCCHHHHHHHHHHHHHHhhcCCHHHH
Q 022024 270 QQCKNDEEIVAVIAHELGHWKLNHTMYS 297 (304)
Q Consensus 270 ~~l~~~~El~aVlaHElgH~k~~H~~~~ 297 (304)
+.+ ++||++||+|||+||++++|..++
T Consensus 82 ~~~-~~~el~aVlaHElgH~~~~h~~~~ 108 (226)
T PF01435_consen 82 ESL-SEDELAAVLAHELGHIKHRHILKS 108 (226)
T ss_dssp HHS-SHHHHHHHHHHHHHHHHTTHCCCC
T ss_pred hcc-cHHHHHHHHHHHHHHHHcCCcchH
Confidence 999 999999999999999999998665
No 12
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=8.9e-15 Score=136.15 Aligned_cols=110 Identities=27% Similarity=0.414 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhHhHHHHHhhcCC--CCCCC------chHHHHHHHHHHHHcCCC-CCcEEEEeCCCCCCcccEEEEcc
Q 022024 186 WAFMFVLSLVMMTLYPVLIAPLFNK--FTPLP------EGELREKIEKLASSLKFP-LKKLFVVDGSTRSSHSNAYMYGF 256 (304)
Q Consensus 186 ~~~~~~~~~~~~~~~p~~i~plf~~--~~pl~------~~~L~~~i~~l~~~~g~~-~~~i~v~~~s~rs~~~NA~~~G~ 256 (304)
..+.+...++.++..+.+....... ..+.. ...+..++++++++.|.+ .+++++.++ +.+|||++|.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~~~v~i~~~----~~~NAFa~g~ 135 (302)
T COG0501 60 LLLAFAALLISLLFSKALVLKSLGALTLSEPILLAPRLYAVLLLKVAELARQAGIPHMPEVYILET----PQPNAFALGG 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhceeecccccccchHHHHHHHHHHHHHHHHCCCCCCCeeEEecC----CCccceecCC
Confidence 3344445555666666666555443 22211 133455899999999999 789999984 6899999997
Q ss_pred C-CCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCCHHHHHHH
Q 022024 257 F-KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIA 300 (304)
Q Consensus 257 ~-~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H~~~~~~~ 300 (304)
+ ++++|++++++++.+ |+||++||+|||+||++|+|..++..+
T Consensus 136 ~~~~~~V~vt~gLl~~l-~~dEl~aVlaHElgHi~~rd~~~~~~~ 179 (302)
T COG0501 136 GPKNGRVVVTTGLLDLL-NDDELEAVLAHELGHIKNRHTLVRLTL 179 (302)
T ss_pred CCCCeeEEecHHHHhhC-CHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 5 679999999999999 999999999999999999999985443
No 13
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.
Probab=99.28 E-value=3.5e-11 Score=112.49 Aligned_cols=91 Identities=29% Similarity=0.534 Sum_probs=78.1
Q ss_pred hcCCCCCCCchHHHHHHHHHHHHcCCCC-CcEEEEeCCCCCCcccEEEEccCCCCEEEEcHhHHhhCCCHHHHHHHHHHH
Q 022024 207 LFNKFTPLPEGELREKIEKLASSLKFPL-KKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHE 285 (304)
Q Consensus 207 lf~~~~pl~~~~L~~~i~~l~~~~g~~~-~~i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~aVlaHE 285 (304)
+.++.++.+|++..+.+++++++.|++. .++++.+. -..++++|+ .+++|++++++.+.+ +++|+++|++||
T Consensus 131 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~s~~-----i~sP~~~G~-~~p~I~lP~~~~~~~-~~~el~~il~HE 203 (299)
T PF05569_consen 131 LLRKARPVEDEELQALLEECKEELGIKRPIRIRVSSG-----ISSPFVFGF-LRPVIVLPESLLEDL-SEEELRAILLHE 203 (299)
T ss_pred HHHhccccCcHHHHHHHHHHHHHhCCCCceEEEEcCC-----CCCCeeecC-cceEEEecCcccccc-CHHHHHHHHHHH
Confidence 4667889999999999999999999874 35555443 467889998 479999999999999 999999999999
Q ss_pred HHHhhcCCHHHHHHHHHhC
Q 022024 286 LGHWKLNHTMYSFIAVQVC 304 (304)
Q Consensus 286 lgH~k~~H~~~~~~~~~~~ 304 (304)
+.|+|++|.+..++...+|
T Consensus 204 l~Hikr~D~~~~~l~~l~~ 222 (299)
T PF05569_consen 204 LAHIKRRDLLWKLLAELLC 222 (299)
T ss_pred HHHHHCCChHHHHHHHHHH
Confidence 9999999999998877653
No 14
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.03 E-value=9.6e-10 Score=106.74 Aligned_cols=85 Identities=26% Similarity=0.386 Sum_probs=69.5
Q ss_pred hcCCCCCCCchHHHHHHHHHHHH----cCCCC--CcEEEEeCCCCCCcccEEEEccCCCCEEEEcHhHHhhCCCHHHHHH
Q 022024 207 LFNKFTPLPEGELREKIEKLASS----LKFPL--KKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVA 280 (304)
Q Consensus 207 lf~~~~pl~~~~L~~~i~~l~~~----~g~~~--~~i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~a 280 (304)
+-+....++|+++.+-|+++..+ .|.+. -+++++++ +..|||++ .+++|+|+.+++-..++|+|+.+
T Consensus 60 lr~~~~~i~D~el~~yv~~~g~rL~~~a~~~~~~f~f~lV~d----~~iNAFA~---~Gg~v~vntGLll~ae~esElag 132 (484)
T COG4783 60 LRGSVPLIRDPELEEYVNSLGQRLAAAADLVKTPFTFFLVND----DSINAFAT---PGGYVVVNTGLLLTAENESELAG 132 (484)
T ss_pred hccCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecC----Cccchhhc---CCceEEEehHHHHhcCCHHHHHH
Confidence 33444567899999988877654 45542 27788875 57999999 67899999999999889999999
Q ss_pred HHHHHHHHhhcCCHHHHH
Q 022024 281 VIAHELGHWKLNHTMYSF 298 (304)
Q Consensus 281 VlaHElgH~k~~H~~~~~ 298 (304)
|||||+||+..+|..+.+
T Consensus 133 ViAHEigHv~qrH~aR~~ 150 (484)
T COG4783 133 VIAHEIGHVAQRHLARSM 150 (484)
T ss_pred HHHHHHHHHhhhhHHHHH
Confidence 999999999999998764
No 15
>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]
Probab=98.75 E-value=1.2e-07 Score=88.25 Aligned_cols=79 Identities=24% Similarity=0.385 Sum_probs=62.7
Q ss_pred chHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEccCCCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCCHH
Q 022024 216 EGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 295 (304)
Q Consensus 216 ~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H~~ 295 (304)
+.|.++.++++.+++..+ ++.+ ..|+ ...+..++|.. .++|++++...+++ ++||++.|++||++|.|+||.+
T Consensus 135 e~d~~~~~~~~~~~~~~k--~i~i-r~s~--~i~~P~v~gl~-kp~IvlP~d~~~r~-~~ee~~yIilHEl~Hlk~gD~i 207 (337)
T COG4219 135 EVDKRKIVTILKNHQYKK--HILI-RKSK--AIDGPMVFGLV-KPCIVLPADFVERL-TDEELKYIILHELSHLKRGDAI 207 (337)
T ss_pred cccHHHHHHHHHHhhhcc--CeeE-eecc--cCCCceeeccC-cceEEccHHHHhhc-CHHhhhhhHhHHHhhhhcccHH
Confidence 456677777777766654 4333 2332 46778899985 69999999999999 9999999999999999999999
Q ss_pred HHHHHH
Q 022024 296 YSFIAV 301 (304)
Q Consensus 296 ~~~~~~ 301 (304)
.+.+..
T Consensus 208 ~n~i~~ 213 (337)
T COG4219 208 INLIVV 213 (337)
T ss_pred HHHHHH
Confidence 887653
No 16
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=5.6e-07 Score=83.86 Aligned_cols=56 Identities=21% Similarity=0.549 Sum_probs=51.0
Q ss_pred cEEEEeCCCCCCcccEEEEccCCCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCCHHHHH
Q 022024 236 KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSF 298 (304)
Q Consensus 236 ~i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H~~~~~ 298 (304)
+|.|+|+ ..+|||+. ++++|++++++++.++++||+++|+|||+||...+|..-.+
T Consensus 240 eihVVnd----PipNAFvL---PgGKvfVFtgiLn~ck~ddglAtvLgHE~aHaVarH~AEki 295 (424)
T KOG2661|consen 240 EIHVVND----PIPNAFVL---PGGKVFVFTGILNSCKDDDGLATVLGHEIAHAVARHAAEKI 295 (424)
T ss_pred EEEEecC----CCCceeec---cCCeEEEEechhhcccChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7889987 46999999 78899999999999999999999999999999999987554
No 17
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=98.43 E-value=5.6e-07 Score=84.27 Aligned_cols=78 Identities=19% Similarity=0.373 Sum_probs=64.1
Q ss_pred CCCchHHHHHHHHHHHHcCCC---C---CcEEEEeCCCCCCcccEEEEccCCCCEEEEcHhHHhhCCCHHHHHHHHHHHH
Q 022024 213 PLPEGELREKIEKLASSLKFP---L---KKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHEL 286 (304)
Q Consensus 213 pl~~~~L~~~i~~l~~~~g~~---~---~~i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~aVlaHEl 286 (304)
.-.|+++.+.+.++..++--. + -+|-++|+ +..|||+. ++.+++++.+|+..+.|..|+.||++||+
T Consensus 60 eY~D~Kler~Vari~g~lt~~S~~p~q~YriTilnS----P~INAFAL---PGGYlYitRGLlAland~sEvAAVl~HEm 132 (479)
T COG4784 60 EYRDPKLERMVARIVGALTAVSENPQQTYRITILNS----PNINAFAL---PGGYLYITRGLLALANDSSEVAAVLAHEM 132 (479)
T ss_pred ccCCHHHHHHHHHHHhHhhhhccCCCceEEEEEecC----CCcccccc---CCceEEEehhHHHHcCCHHHHHHHHHhhh
Confidence 445888888888887765432 1 15677774 57999998 78999999999998888999999999999
Q ss_pred HHhhcCCHHHH
Q 022024 287 GHWKLNHTMYS 297 (304)
Q Consensus 287 gH~k~~H~~~~ 297 (304)
||+--+|-..+
T Consensus 133 gHVtAnHgi~r 143 (479)
T COG4784 133 GHVTANHGIQR 143 (479)
T ss_pred hheecchhHHH
Confidence 99999998754
No 18
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=97.65 E-value=0.00013 Score=65.82 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEccCCCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCCHHH
Q 022024 217 GELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMY 296 (304)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H~~~ 296 (304)
.++...++..+++.|.+...+.+-+.+++ +|.+.....+..+..+... +++.+++|++||++|.|..+--+
T Consensus 123 ~~l~~~~~~~~~~l~~~~~~~~ik~~k~~--------WGScs~~~~i~~~~~l~~~-p~~~i~YVvvHELaHLke~nHs~ 193 (223)
T COG1451 123 EILEIRLKEYAKKLGVPPRAIKLKNMKRR--------WGSCSKAGEIRFNWRLVMA-PEEVIDYVVVHELAHLKEKNHSK 193 (223)
T ss_pred HHHHHHHHHHHHHhCCCccceeeeeccce--------eeeecCCCcEEeehhhhcC-CHHHHHHHHHHHHHHHhhhhccH
Confidence 45666777888889998888888766543 7876433356666666678 99999999999999999876444
Q ss_pred H
Q 022024 297 S 297 (304)
Q Consensus 297 ~ 297 (304)
.
T Consensus 194 ~ 194 (223)
T COG1451 194 R 194 (223)
T ss_pred H
Confidence 4
No 19
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=97.61 E-value=0.00011 Score=64.66 Aligned_cols=67 Identities=30% Similarity=0.375 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEccC-CCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCC
Q 022024 217 GELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFF-KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNH 293 (304)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~-~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H 293 (304)
..+.+++...++++|.+.+++.+-+...| +|.| .+++|-++-.|+. + +++-+++|+.||++|.++.+
T Consensus 112 ~~l~~~~~~~~~~~~~~~~~i~ir~~ksr--------WGsc~~~~~I~ln~~L~~-~-P~~~idYVvvHEL~Hl~~~n 179 (205)
T PF01863_consen 112 EYLPERLKKYAKKLGLPPPKIKIRDMKSR--------WGSCSSKGNITLNWRLVM-A-PPEVIDYVVVHELCHLRHPN 179 (205)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEeehhhc--------cccCCCCCcEEeeccccc-C-CccHHHHHHHHHHHHhccCC
Confidence 56777888889999999999988765433 8866 4667777777764 6 89999999999999997654
No 20
>PRK04351 hypothetical protein; Provisional
Probab=97.05 E-value=0.0033 Score=53.21 Aligned_cols=71 Identities=21% Similarity=0.459 Sum_probs=51.4
Q ss_pred CCchHHHHHHHHHHHH-cCCCCCcEEEEeCCCCCCcccEEEEccCCCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHh
Q 022024 214 LPEGELREKIEKLASS-LKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHW 289 (304)
Q Consensus 214 l~~~~L~~~i~~l~~~-~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~ 289 (304)
+.|.||.+.+++++++ .+-|.+.-...+..-+ +..-++.. +...|-++..+++.. +++++..||+||+.|+
T Consensus 1 ~~~~~l~~l~~~~s~~~F~~~f~~~v~~n~Rlr-ttgG~~~l---~~~~I~lnp~ll~~~-~~~~l~~vv~HElcH~ 72 (149)
T PRK04351 1 MTNQELQRLVEEISLEYFGKPFRHQAYFNKRLR-TTGGRYLL---KDHHIEFNPKMLEEY-GLEELIGIIKHELCHY 72 (149)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcEEEEeccch-hhhheeec---CCCeEEeCHHHHhhc-cHHHHHhhHHHHHHHH
Confidence 3578999999999975 5666543333333222 12223322 578999999999998 9999999999999998
No 21
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=96.16 E-value=0.0084 Score=47.13 Aligned_cols=33 Identities=33% Similarity=0.362 Sum_probs=26.9
Q ss_pred CCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCCHHH
Q 022024 259 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMY 296 (304)
Q Consensus 259 ~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H~~~ 296 (304)
.+.|++.+. + ++++-..++||||||+..+|...
T Consensus 28 ~~~I~in~~----~-~~~~~~f~laHELgH~~~~~~~~ 60 (122)
T PF06114_consen 28 NPIIFINSN----L-SPERQRFTLAHELGHILLHHGDE 60 (122)
T ss_dssp TTEEEEESS----S--HHHHHHHHHHHHHHHHHHH-HH
T ss_pred CCEEEECCC----C-CHHHHHHHHHHHHHHHHhhhccc
Confidence 788888886 4 88999999999999999888764
No 22
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=96.06 E-value=0.014 Score=44.14 Aligned_cols=70 Identities=26% Similarity=0.371 Sum_probs=46.3
Q ss_pred CCCchHHHHHHHHHHHHcCCCCCcEEEEeC-----CCCCCcccEEEEccCCCCEEEEcHhHHhhCCCHHHHHHHHHHHHH
Q 022024 213 PLPEGELREKIEKLASSLKFPLKKLFVVDG-----STRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELG 287 (304)
Q Consensus 213 pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~-----s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~aVlaHElg 287 (304)
||+ +.++..++ .+.|.+..+|.+-.+ ..++....||+.| ..|++..+-.+ . +..+=.+++|||++
T Consensus 1 PLp-~~~r~~~e---~~~G~dl~~Vrvh~~~~a~~~~~~~~A~A~T~G----~~I~f~~g~~~-~-~s~~~~~llaHEl~ 70 (79)
T PF13699_consen 1 PLP-ESIRSRLE---RAFGADLSDVRVHTGPAASRAAAALGARAFTVG----NDIYFAPGKYN-P-DSPEGRALLAHELA 70 (79)
T ss_pred CCC-HHHHHHHH---HHhCCCccceEEEeCCchhhhhhccCCeEEEEC----CEEEEcCCCcC-C-CCCCcchhHhHHHH
Confidence 454 34566554 478888888888655 2345667777775 57888554432 2 34556789999999
Q ss_pred HhhcC
Q 022024 288 HWKLN 292 (304)
Q Consensus 288 H~k~~ 292 (304)
|+...
T Consensus 71 Hv~Qq 75 (79)
T PF13699_consen 71 HVVQQ 75 (79)
T ss_pred HHHhh
Confidence 98643
No 23
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=96.03 E-value=0.018 Score=53.93 Aligned_cols=76 Identities=24% Similarity=0.263 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCCCcccEEE-Ec---cCCCCEEEEcHhHHhhCC------CHHHHHHHHHHHH
Q 022024 219 LREKIEKLASSLKFP--LKKLFVVDGSTRSSHSNAYM-YG---FFKNKRIVLYDTLIQQCK------NDEEIVAVIAHEL 286 (304)
Q Consensus 219 L~~~i~~l~~~~g~~--~~~i~v~~~s~rs~~~NA~~-~G---~~~~k~Ivl~d~Ll~~l~------~~~El~aVlaHEl 286 (304)
+.+...+..++.|.+ .|++.+.+++.+|...+|-. +| ++..++|++..+.++.++ .+--..+|||||.
T Consensus 99 le~~W~~~~~~~g~~y~~P~lv~~~~~~~t~CG~a~s~~gpFYCp~D~tIYlD~~f~~~L~~~~ga~G~~a~ayVlAHEy 178 (292)
T PF04228_consen 99 LEDVWTPQFPQAGLPYRPPKLVLFSGSVQTGCGTASSATGPFYCPADQTIYLDLSFFDELQQRFGASGDFAQAYVLAHEY 178 (292)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEeCCCCCCCCCCCcCCCCCEeCCCCCEEEechHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 344445555667765 57888877766666555421 12 246789999877665541 1223577999999
Q ss_pred HHhhcCCH
Q 022024 287 GHWKLNHT 294 (304)
Q Consensus 287 gH~k~~H~ 294 (304)
||...+..
T Consensus 179 GHHVQ~l~ 186 (292)
T PF04228_consen 179 GHHVQNLL 186 (292)
T ss_pred HHHHHHHh
Confidence 99876544
No 24
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=95.61 E-value=0.041 Score=48.51 Aligned_cols=74 Identities=26% Similarity=0.132 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEE--eCCCCCCc-ccEEEEccCCCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCC
Q 022024 218 ELREKIEKLASSLKFPLKKLFVV--DGSTRSSH-SNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNH 293 (304)
Q Consensus 218 ~L~~~i~~l~~~~g~~~~~i~v~--~~s~rs~~-~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H 293 (304)
.+.+.++++.+...-+--+|++. |...+... ...+..|.+...+|.++- +-+.. +.+++.+++|||+.|..+.+
T Consensus 4 ~i~~~~~~~~~~~~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~-~~~~~-~~~~l~~~iaHE~hH~~r~~ 80 (195)
T PF10026_consen 4 IIEEALEKSIELLPGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFL-LPNDY-SLEELPALIAHEYHHNCRYE 80 (195)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEe-cCCcc-cHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666554455544 33222222 223344444567777775 44555 88999999999999996543
No 25
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=95.58 E-value=0.031 Score=46.88 Aligned_cols=66 Identities=24% Similarity=0.346 Sum_probs=44.5
Q ss_pred HHHHHHHHHH-HHcC--CCCCcEEEEeCCCCCCcccEEEEccC--CCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhc
Q 022024 218 ELREKIEKLA-SSLK--FPLKKLFVVDGSTRSSHSNAYMYGFF--KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKL 291 (304)
Q Consensus 218 ~L~~~i~~l~-~~~g--~~~~~i~v~~~s~rs~~~NA~~~G~~--~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~ 291 (304)
+|.+.++++- +-++ ++.+.|.. +...++ ..|.. ....|.++..+++.. +++++..||.||+.|+..
T Consensus 2 ~L~~~~~~~n~~~F~~~l~~~~i~w-~~r~~~------~~G~~~~~~~~I~ln~~l~~~~-~~~~l~~~l~HEm~H~~~ 72 (146)
T smart00731 2 ELTQRLEDASLRVFGRKLPHPKVVW-NKRLRK------TGGRCLLKSAEIRLNPKLLTEN-GRDRLRETLLHELCHAAL 72 (146)
T ss_pred hHHHHHHHHHHHHHCCCCCCCEEEE-ehhhhh------hhHHhhcCCCEEEeCHHHHhhc-cHHHHHhhHHHHHHHHHH
Confidence 5667777665 3344 33343433 322111 13432 478999999999988 999999999999999975
No 26
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=94.60 E-value=0.18 Score=42.27 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=29.5
Q ss_pred CEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCC
Q 022024 260 KRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNH 293 (304)
Q Consensus 260 k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H 293 (304)
..|.++..+++.. +++|+..+|.||+.|+...+
T Consensus 43 ~~I~ls~~~~~~~-~~~~~~~tL~HEm~H~~~~~ 75 (157)
T PF10263_consen 43 CEIRLSPKLLDRN-PEEELIDTLLHEMAHAAAYV 75 (157)
T ss_pred eEEEECHHHHHhh-HHHHHHHHHHHHHHHHHhhh
Confidence 3899999999997 99999999999999987643
No 27
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=93.72 E-value=0.12 Score=46.24 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=24.3
Q ss_pred CCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhh
Q 022024 258 KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (304)
Q Consensus 258 ~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k 290 (304)
+.+.|.++ + ++.. +.+.++.|++|||||.-
T Consensus 116 P~~~I~I~-~-~~~~-~~~~~~hvi~HEiGH~I 145 (211)
T PF12388_consen 116 PYKFIQIY-G-LSNY-SVNVIEHVITHEIGHCI 145 (211)
T ss_pred CCceEEEE-e-cCCC-chhHHHHHHHHHhhhhc
Confidence 47889884 3 4667 88999999999999963
No 28
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=93.68 E-value=0.46 Score=42.74 Aligned_cols=81 Identities=21% Similarity=0.230 Sum_probs=50.4
Q ss_pred HHhhcCCCCCCCc---hHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEccCCCCEEEEcHhHHhhCCCHHHHHH
Q 022024 204 IAPLFNKFTPLPE---GELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVA 280 (304)
Q Consensus 204 i~plf~~~~pl~~---~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~a 280 (304)
+..-|+|+...++ ..=.|.-+.+.++.|+.--+|..+++ .-++|-| |..|.|-++++--+.- -=--.|
T Consensus 21 vk~~~~kYs~v~~~~g~TGae~Ar~iL~~~gl~~V~Ve~~~G-~LtDHYd------P~~k~vrLS~~vy~~~--SiaAva 91 (222)
T PF04298_consen 21 VKSTFKKYSQVRSSSGMTGAEVARHILDRNGLSDVRVERVPG-ELTDHYD------PRNKVVRLSEDVYNGR--SIAAVA 91 (222)
T ss_pred HHHHHHhhCcCCCCCCCCHHHHHHHHHHHCCCCCeeEEEeCC-CCCCCcC------CCCCEEEeCCccCCCC--CHHHHH
Confidence 3445555544332 22344455567789986545555553 2245543 3789999999876543 234567
Q ss_pred HHHHHHHHhhcCC
Q 022024 281 VIAHELGHWKLNH 293 (304)
Q Consensus 281 VlaHElgH~k~~H 293 (304)
|-|||.||.-.++
T Consensus 92 VAAHEvGHAiQ~a 104 (222)
T PF04298_consen 92 VAAHEVGHAIQHA 104 (222)
T ss_pred HHHHHHhHHHhcc
Confidence 8999999987765
No 29
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=93.35 E-value=0.2 Score=42.28 Aligned_cols=68 Identities=22% Similarity=0.304 Sum_probs=46.9
Q ss_pred chHHHHHHHHHHHHcCCC--CCcEEEEeCCCCCCcccEEEEccCCCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhh
Q 022024 216 EGELREKIEKLASSLKFP--LKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (304)
Q Consensus 216 ~~~L~~~i~~l~~~~g~~--~~~i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k 290 (304)
+.+|++.+++.....+=+ .+++..-...+ +..-||+- ++ .|=++..++... .+|++.-|+.|||+|+.
T Consensus 4 ~~~L~~~~~~as~~~~r~~~~p~~~~n~Rg~--taG~ayL~---~~-~I~lNP~ll~en-~~~f~~~vV~HELaHl~ 73 (156)
T COG3091 4 NRKLQQCVEQASLKFFRKFFRPKASYNQRGR--TAGGAYLL---KS-EIRLNPKLLEEN-GEDFIEQVVPHELAHLH 73 (156)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcceehhhhhh--hcchhhcc---cc-ccccCHHHHHHc-cHHHHHHHHHHHHHHHH
Confidence 457888888777765533 35554432221 22233333 44 899999999998 99999999999999973
No 30
>PF13203 DUF2201_N: Putative metallopeptidase domain
Probab=92.90 E-value=0.21 Score=46.52 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=34.8
Q ss_pred CCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCCHHHH
Q 022024 259 NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYS 297 (304)
Q Consensus 259 ~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H~~~~ 297 (304)
+.+|.+....+..+ +.+|+.+|++||+-|...+|..+.
T Consensus 42 g~~l~~nP~~~~~l-~~~~~~~~l~HevlH~~~~H~~r~ 79 (292)
T PF13203_consen 42 GRRLYYNPEFLESL-SPEERVGLLLHEVLHCLLRHPWRR 79 (292)
T ss_pred CcEEEECcHHHhcC-CHHHHHHHHHHHHHHHHccchhhh
Confidence 45999999999999 999999999999999999998764
No 31
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=92.49 E-value=0.3 Score=43.50 Aligned_cols=46 Identities=26% Similarity=0.268 Sum_probs=39.4
Q ss_pred CcccEEEEccCCCCEEEEcHhHHhhCCC-----HHHHHHHHHHHHHHhhcCC
Q 022024 247 SHSNAYMYGFFKNKRIVLYDTLIQQCKN-----DEEIVAVIAHELGHWKLNH 293 (304)
Q Consensus 247 ~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~-----~~El~aVlaHElgH~k~~H 293 (304)
...-|++.|-+..+.|-++...++.. + .+|+..||-||+.|.-..+
T Consensus 61 ~~gVA~t~gd~~~~~I~~S~~~i~~~-~~~~~~~~Ei~Gvl~HE~~H~~Q~~ 111 (205)
T PF04450_consen 61 MDGVAYTSGDDDHKEIHFSARYIAKY-PADGDVRDEIIGVLYHEMVHCWQWD 111 (205)
T ss_pred CCeeEEEecCCCccEEEEeHHHHhhc-ccccchHHHHHHHHHHHHHHHhhcC
Confidence 56889999966789999999999987 5 3599999999999987654
No 32
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=90.34 E-value=1.2 Score=42.35 Aligned_cols=18 Identities=28% Similarity=0.187 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHHhhc
Q 022024 274 NDEEIVAVIAHELGHWKL 291 (304)
Q Consensus 274 ~~~El~aVlaHElgH~k~ 291 (304)
++-++-+.+|||+||.+.
T Consensus 192 p~~~~P~T~~HElAHq~G 209 (318)
T PF12725_consen 192 PPYSLPFTICHELAHQLG 209 (318)
T ss_pred CcccccHHHHHHHHHHhC
Confidence 677889999999999864
No 33
>PRK04860 hypothetical protein; Provisional
Probab=90.17 E-value=1 Score=38.54 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=30.0
Q ss_pred CCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcC
Q 022024 258 KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLN 292 (304)
Q Consensus 258 ~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~ 292 (304)
....|-++..+++.- +++++..||.||++|+.-+
T Consensus 44 ~~~~I~~Np~ll~~~-~~~~l~~~v~HEl~H~~~~ 77 (160)
T PRK04860 44 QSNEIRLNPVLLLEN-QQAFIDEVVPHELAHLLVY 77 (160)
T ss_pred hcCCeeeCHHHHhhC-cHHHHHhHHHHHHHHHHHH
Confidence 567899999999988 9999999999999998543
No 34
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=89.65 E-value=0.7 Score=40.56 Aligned_cols=68 Identities=18% Similarity=0.179 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEccC--CCCEEEE---cHhHHhhCCCHHHHHHHHHHHHHHhhcCC
Q 022024 219 LREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFF--KNKRIVL---YDTLIQQCKNDEEIVAVIAHELGHWKLNH 293 (304)
Q Consensus 219 L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~--~~k~Ivl---~d~Ll~~l~~~~El~aVlaHElgH~k~~H 293 (304)
+.+.+..++++.++.++.+..+.-.. .+ .+|.. ++..|.| +++. ....+-++|..|+.|||+|..++.
T Consensus 25 lA~~v~pIM~~~~~~V~~L~E~~P~~----~~--llG~N~N~G~~I~lrLR~~~~-~~fl~~~~i~~t~lHELaH~~~~~ 97 (186)
T PF08325_consen 25 LAADVKPIMRKHGWRVGSLEEFYPNG----ER--LLGLNVNKGEKICLRLRTPDD-GGFLPYETILGTMLHELAHNVHGP 97 (186)
T ss_pred HHHHHHHHHHHcCcccCeeeccCCCC----CC--CcceecCCCcEEEEEeCCCCC-CCEeeHHHHHHHHHHHHHhcccCC
Confidence 44456667778888877776664321 11 66753 3344433 2222 333388999999999999998653
No 35
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=89.31 E-value=0.46 Score=39.90 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=21.7
Q ss_pred CCCEEEEcHhHHhh----CCCHHHHHHHHHHHHHHhh
Q 022024 258 KNKRIVLYDTLIQQ----CKNDEEIVAVIAHELGHWK 290 (304)
Q Consensus 258 ~~k~Ivl~d~Ll~~----l~~~~El~aVlaHElgH~k 290 (304)
.+..|.+.+.-+.. . +.++..++++|||||.-
T Consensus 71 ~~g~i~~~~~~~~~~~~~~-~~~~~~~~~~HEiGHaL 106 (165)
T cd04268 71 LTGEILLARVYLYSSFVEY-SGARLRNTAEHELGHAL 106 (165)
T ss_pred CCccEEeeEEEEchhHHHH-HHHHHHHHHHHHHHHHh
Confidence 35566665544421 2 45689999999999963
No 36
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=88.39 E-value=0.77 Score=41.17 Aligned_cols=28 Identities=32% Similarity=0.305 Sum_probs=21.9
Q ss_pred CEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcC
Q 022024 260 KRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLN 292 (304)
Q Consensus 260 k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~ 292 (304)
+-|++... . +++.-..++||||||.-.+
T Consensus 59 ~~I~iN~n----~-~~~r~rFtlAHELGH~llH 86 (213)
T COG2856 59 PVIYINAN----N-SLERKRFTLAHELGHALLH 86 (213)
T ss_pred ceEEEeCC----C-CHHHHHHHHHHHHhHHHhc
Confidence 46666654 3 7888999999999998654
No 37
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.
Probab=87.90 E-value=1.5 Score=36.06 Aligned_cols=38 Identities=34% Similarity=0.254 Sum_probs=23.4
Q ss_pred cccEEEEccCCCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhh
Q 022024 248 HSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (304)
Q Consensus 248 ~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k 290 (304)
.+=|...|.| +.+|.+-..-.+.. ++-- |.+||+||.-
T Consensus 52 ~sya~~~g~G-~G~I~l~~~~~qgy-~~~R---IaaHE~GHiL 89 (132)
T PF02031_consen 52 GSYASTDGLG-SGYIFLDYQQNQGY-NSTR---IAAHELGHIL 89 (132)
T ss_dssp --EEEE-SSS--EEEEEEHHHHHHS--HHH---HHHHHHHHHH
T ss_pred CcccccCCCC-cEEEEechHHhhCC-ccce---eeeehhcccc
Confidence 3456677775 56888876555555 3332 8999999974
No 38
>COG4900 Predicted metallopeptidase [General function prediction only]
Probab=86.36 E-value=2.3 Score=34.20 Aligned_cols=72 Identities=24% Similarity=0.251 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCCC---CcEEEEeCCCCCCcccEEEEccC----------CCCEEEEcHhHHhhCCCHHHHHHHHHH
Q 022024 218 ELREKIEKLASSLKFPL---KKLFVVDGSTRSSHSNAYMYGFF----------KNKRIVLYDTLIQQCKNDEEIVAVIAH 284 (304)
Q Consensus 218 ~L~~~i~~l~~~~g~~~---~~i~v~~~s~rs~~~NA~~~G~~----------~~k~Ivl~d~Ll~~l~~~~El~aVlaH 284 (304)
+..+.++.+..+.|++. .+++++-+....+.+-|=.+|.+ +.--|=+-..-.+.+ +.+|-.-|+.|
T Consensus 8 dve~~~~~~V~~lgLdyi~~~rv~vVys~gS~~~A~ARIwg~pki~~e~lglnP~YviEl~sekF~rL-s~~ekvKviiH 86 (133)
T COG4900 8 DVEADIKNAVVRLGLDYIFQVRVVVVYSPGSHSKAVARIWGIPKIFQEVLGLNPVYVIELLSEKFKRL-SCAEKVKVIIH 86 (133)
T ss_pred cHHHHHHHHHHHhCcceeeeeeEEEEECCCCcceehhhhhcccHHHHHHhCCCCeeeeeeehhhcCCC-ChHHHHHHHHH
Confidence 34556666777888773 57888765432234444445542 111222333334567 88999999999
Q ss_pred HHHHhh
Q 022024 285 ELGHWK 290 (304)
Q Consensus 285 ElgH~k 290 (304)
|+.|+-
T Consensus 87 EllHIP 92 (133)
T COG4900 87 ELLHIP 92 (133)
T ss_pred HHhcCc
Confidence 999984
No 39
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=85.02 E-value=0.43 Score=48.57 Aligned_cols=73 Identities=25% Similarity=0.222 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHcCCCCCcEE-------EEeC-CCCCCcccEEEEccCC--CCEEEEcHhHHhhCCCHHHHHHHHHHHH
Q 022024 217 GELREKIEKLASSLKFPLKKLF-------VVDG-STRSSHSNAYMYGFFK--NKRIVLYDTLIQQCKNDEEIVAVIAHEL 286 (304)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~~~i~-------v~~~-s~rs~~~NA~~~G~~~--~k~Ivl~d~Ll~~l~~~~El~aVlaHEl 286 (304)
++..+.+.++.+++|....++. .+|. ++..+.+.||++|++. .++|.++ --.+.+++. +++||+
T Consensus 272 e~~~~~~~~~~~~l~~~~~e~~~~~~~~~~iD~~~r~gK~~Gayc~~~~~~~~P~I~~N-----f~~t~~dv~-TL~HEl 345 (549)
T TIGR02289 272 DFLLEKAEKMYKELSLEFYEFFNFMREKNLLDLESRKGKAAGGYCTYLPKYKAPFIFSN-----FNGTSGDID-VLTHEA 345 (549)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHhcCccccCCCCCCCCCcccCCCCCCCCcEEEEe-----CCCChhHHH-HHHHHh
Confidence 4556666666666654432221 2333 5566788999999853 4555432 111455554 589999
Q ss_pred HHhhcCCHH
Q 022024 287 GHWKLNHTM 295 (304)
Q Consensus 287 gH~k~~H~~ 295 (304)
||.-|....
T Consensus 346 GHa~H~~~s 354 (549)
T TIGR02289 346 GHAFHVYES 354 (549)
T ss_pred hHHHHHHHh
Confidence 999876543
No 40
>TIGR00181 pepF oligoendopeptidase F. This family represents the oligoendopeptidase F clade of the family of larger M3 or thimet (for thiol-dependent metallopeptidase) oligopeptidase family. Lactococcus lactis PepF hydrolyzed peptides of 7 and 17 amino acids with fairly broad specificity. The homolog of lactococcal PepF in group B Streptococcus was named PepB (PubMed:8757883), with the name difference reflecting a difference in species of origin rather activity; substrate profiles were quite similar. Differences in substrate specificity should be expected in other species. The gene is duplicated in Lactococcus lactis on the plasmid that bears it. A shortened second copy is found in Bacillus subtilis.
Probab=84.51 E-value=0.61 Score=47.82 Aligned_cols=47 Identities=26% Similarity=0.248 Sum_probs=30.5
Q ss_pred CCCCCcccEEEEccC-CCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCCHH
Q 022024 243 STRSSHSNAYMYGFF-KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 295 (304)
Q Consensus 243 s~rs~~~NA~~~G~~-~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H~~ 295 (304)
+++.+.+.||++|.+ ..++|+++= -.+.++ ...++||+||.-|....
T Consensus 348 ~r~gK~~Ga~~~~~~~~~p~il~N~-----~~~~~d-v~TLaHElGHa~H~~~~ 395 (591)
T TIGR00181 348 ENKGKRSGAYSIGGYKVKPYILMNW-----DGTLNS-VFTLAHELGHSMHSYFS 395 (591)
T ss_pred CCCCCCCCcccCCCCCCCCeEEEec-----CCCcch-HHHHHHHhhhHHHHHHH
Confidence 445667789999985 456665531 113344 35789999999776543
No 41
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=84.27 E-value=2.8 Score=31.43 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=35.3
Q ss_pred CchHHHHHH----HHHHHHcCCCCC---cEEEEeCCCCCCcccEEEEccCCCCEEEEcHhHHhhCCCHHHHHHHHH
Q 022024 215 PEGELREKI----EKLASSLKFPLK---KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIA 283 (304)
Q Consensus 215 ~~~~L~~~i----~~l~~~~g~~~~---~i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~aVla 283 (304)
.|++.++++ .+.+++.|+..+ +|.|++.+. ...++||...=-..+ |++|+++|-+
T Consensus 15 ~Dp~Fr~~Ll~DPraaL~e~G~~~P~~~~i~VvE~t~-------------~~~~lVlP~~P~~~l-se~~L~~vag 76 (77)
T TIGR03793 15 EDEAFKQALLTNPKEALEREGVQVPAEVEVKVVEESP-------------TVLYLVLPVNPDIEL-TDEQLDAVAG 76 (77)
T ss_pred cCHHHHHHHHHCHHHHHHHhCCCCCCceEEEEEEcCC-------------CeEEEEecCCCCCCC-CHHHHHHhhC
Confidence 467777776 566677898864 788888642 223444422211178 9999999854
No 42
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=83.64 E-value=2.5 Score=36.66 Aligned_cols=42 Identities=24% Similarity=0.179 Sum_probs=26.6
Q ss_pred CCcccEEEEccCC-CCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhh
Q 022024 246 SSHSNAYMYGFFK-NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (304)
Q Consensus 246 s~~~NA~~~G~~~-~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k 290 (304)
....-|+..|.+. .....+.... .- +..+...++|||+||--
T Consensus 101 ~~~G~A~~g~iC~~~~~~~v~~~~--~~-~~~~~a~~~AHElGH~l 143 (194)
T cd04269 101 NTVGLAYVGGMCSPKYSGGVVQDH--SR-NLLLFAVTMAHELGHNL 143 (194)
T ss_pred CceeeeecCCccCCCcceEEEEeC--Cc-chHHHHHHHHHHHHhhc
Confidence 3456778888864 3444433221 11 24678899999999974
No 43
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=81.96 E-value=0.87 Score=38.20 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 022024 275 DEEIVAVIAHELGHWK 290 (304)
Q Consensus 275 ~~El~aVlaHElgH~k 290 (304)
..++.+|+.||+||.-
T Consensus 101 ~~~~~~~~~HEiGHaL 116 (156)
T cd04279 101 AENLQAIALHELGHAL 116 (156)
T ss_pred chHHHHHHHHHhhhhh
Confidence 5689999999999974
No 44
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=80.92 E-value=2.4 Score=33.17 Aligned_cols=34 Identities=32% Similarity=0.380 Sum_probs=23.9
Q ss_pred CCCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCCH
Q 022024 257 FKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHT 294 (304)
Q Consensus 257 ~~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H~ 294 (304)
+..+.+++.- +.- +++.+..+++||++|.-+++.
T Consensus 8 ~~~~~i~~~~---~~~-~~~~~~~~l~HE~~H~~~~~~ 41 (128)
T PF13485_consen 8 PGFNRIVVYF---QGS-DEDWLDRVLAHELAHQWFGNY 41 (128)
T ss_pred cCCCEEEEec---CCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 3455666533 223 788889999999999976654
No 45
>cd06455 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase 24.15; soluble metallo-endopeptidase; EC 3.4.24.15) family also includes neurolysin (endopeptidase 24.16, microsomal endopeptidase, mitochondrial oligopeptidase M, neurotensin endopeptidase, soluble angiotensin II-binding protein, thimet oligopeptidase II) which hydrolyzes oligopeptides such as neurotensin, bradykinin and dynorphin A. TOP and neurolysin are neuropeptidases expressed abundantly in the testis, but also found in the liver, lung and kidney. They are involved in the metabolism of neuropeptides under 20 amino acid residues long and cleave most bioactive peptides at the same sites, but recognize different positions on some naturally occurring and synthetic peptides; they cleave at distinct sites on the 13-residue bioactive peptide neurotensin, which modulates central dopaminergic and cholinergic circuits. TOP has been shown to degrade peptides released by the proteasom
Probab=80.62 E-value=2.8 Score=41.87 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=29.3
Q ss_pred CCCCCcccEEEEccCCCCE----------EEEcHhHHhh-------CCCHHHHHHHHHHHHHHhhcCC
Q 022024 243 STRSSHSNAYMYGFFKNKR----------IVLYDTLIQQ-------CKNDEEIVAVIAHELGHWKLNH 293 (304)
Q Consensus 243 s~rs~~~NA~~~G~~~~k~----------Ivl~d~Ll~~-------l~~~~El~aVlaHElgH~k~~H 293 (304)
++..+.+.|+.+|+.+.+. +++.-+.-.. + +-+|+ ..++||+||.-|+.
T Consensus 213 ~R~gK~~Ga~~~~~~~~~~~~~g~~~~P~~~i~~Nf~~~~~~~p~ll-~~~~V-~TLfHEfGHalH~~ 278 (472)
T cd06455 213 PREGKYGHAANFGLQPGFLLPDGSRQYPVAALVCNFPKPTADKPSLL-RHDEV-ETFFHEFGHVIHHL 278 (472)
T ss_pred CCCCCCCCccccccccceecCCCCEeCCEEEEECcCCCCCCCCCCCC-CHHHH-HHHHHHHHHHHHHH
Confidence 4556788899988743331 2332222211 2 35776 45899999998754
No 46
>PF01432 Peptidase_M3: Peptidase family M3 This Prosite motif covers only the active site. This family belongs to family M3 of the peptidase classification.; InterPro: IPR001567 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M3 (clan MA(E)), subfamilies M3A and M3B. The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The Thimet oligopeptidase family, is a large family of archaeal, bacterial and eukaryotic oligopeptidases that cleave medium sized peptides. The group contains: mitochondrial intermediate peptidase (3.4.24.59 from EC) Neurolysin, mitochondrial precursor, (3.4.24.16 from EC) Thimet oligopeptidase (3.4.24.15 from EC) Dipeptidyl carboxypeptidase (3.4.15.5 from EC) Oligopeptidase A (3.4.24.70 from EC) Oligoendopeptidase F ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QR4_B 3CE2_A 1Y79_1 2H1J_A 2H1N_A 2O36_A 1S4B_P 2O3E_A 1I1I_P.
Probab=80.36 E-value=1.4 Score=43.56 Aligned_cols=55 Identities=11% Similarity=0.208 Sum_probs=31.6
Q ss_pred cEEEEeCCCCCCcccEEEEccCCC--------CEEEEcHhHHh-------hCCCHHHHHHHHHHHHHHhhcC
Q 022024 236 KLFVVDGSTRSSHSNAYMYGFFKN--------KRIVLYDTLIQ-------QCKNDEEIVAVIAHELGHWKLN 292 (304)
Q Consensus 236 ~i~v~~~s~rs~~~NA~~~G~~~~--------k~Ivl~d~Ll~-------~l~~~~El~aVlaHElgH~k~~ 292 (304)
.+|+=--++..+.+.|+..++.+. +..++.-+.-. .+ +.+++ -.++||+||.-|.
T Consensus 187 ~~ylDl~~R~gK~~ga~~~~~~~~~~~~~~~~~~~~i~~n~~~~~~~~~~ll-~~~~v-~tLfHE~GHa~H~ 256 (458)
T PF01432_consen 187 YIYLDLYPRPGKRSGAFCFTLRPSRSDGERQLPVPYIFCNFTGPSAGKPSLL-SHDDV-ETLFHEFGHAMHS 256 (458)
T ss_dssp EEEEEES--TTS-SS-EEEEEEC-BTTSTCECEEEEEEEEE-S-BTTC--B--SHHHH-HHHHHHHHHHHHH
T ss_pred cccccchhcCCCCCCceeCCccCccccccCCCCceEEEecCCCCCCCCCCcc-ChhhH-HHHHHHHhHHHHH
Confidence 344422355667888999998554 45555444443 23 66777 6789999998764
No 47
>COG2321 Predicted metalloprotease [General function prediction only]
Probab=79.23 E-value=4.9 Score=37.33 Aligned_cols=72 Identities=22% Similarity=0.243 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCCC--CCcEEEEeCCCCCCcccEE-EEc---cCCCCEEEEcHhHHhhCC------CHHHHHHHHHHHHHH
Q 022024 221 EKIEKLASSLKFP--LKKLFVVDGSTRSSHSNAY-MYG---FFKNKRIVLYDTLIQQCK------NDEEIVAVIAHELGH 288 (304)
Q Consensus 221 ~~i~~l~~~~g~~--~~~i~v~~~s~rs~~~NA~-~~G---~~~~k~Ivl~d~Ll~~l~------~~~El~aVlaHElgH 288 (304)
+....+-++.|-. .|++....++.++....|= ++| ++..+++++--+..+.++ .+=--++|+|||.||
T Consensus 98 d~W~~if~~~~~~Y~~Ptlvlf~~~v~t~CG~assasGPFYCP~D~kvYlDlsFf~~m~~~fga~GdfAqaYViAHEVGH 177 (295)
T COG2321 98 DTWMQIFQESGRTYQKPTLVLFSGQVRTGCGFASSASGPFYCPADTKVYLDLSFFDEMKTKFGASGDFAQAYVIAHEVGH 177 (295)
T ss_pred HHHHHHHHHhcccccCCeEEEecCccccCcCCCCcCCCCeecCCCceEEEehhHHHHHHHHhcCCccHHHHHHHHhhhhH
Confidence 3344455555533 4678778777777664433 344 245888998887777761 223457899999999
Q ss_pred hhcC
Q 022024 289 WKLN 292 (304)
Q Consensus 289 ~k~~ 292 (304)
+..+
T Consensus 178 HVQn 181 (295)
T COG2321 178 HVQN 181 (295)
T ss_pred HHHH
Confidence 8754
No 48
>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases. The M3 family is subdivided into two subfamilies: the widespread M3A, which comprises a number of high-molecular mass endo- and exopeptidases from bacteria, archaea, protozoa, fungi, plants and animals, and the small M3B, whose members are enzymes primarily from bacteria. Well-known mammalian/eukaryotic M3A endopeptidases are the thimet oligopeptidase (TOP; endopeptidase 3.4.24.15), neurolysin (alias endopeptidase 3.4.24.16), and the mitochondrial intermediate peptidase. The first two are intracellular oligopeptidases, which act only on relatively short substrates of less than 20 amino acid residues, while the latter cleaves N-terminal octapeptides from proteins during their import into the mitochondria. The M3A subfamily also contains several bacterial endopeptidases, collectively called olig
Probab=78.66 E-value=4 Score=38.98 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=32.9
Q ss_pred CCCCCcccEEEEccCC-----CCEEEEcHhHHhh-------CCCHHHHHHHHHHHHHHhhcCCH
Q 022024 243 STRSSHSNAYMYGFFK-----NKRIVLYDTLIQQ-------CKNDEEIVAVIAHELGHWKLNHT 294 (304)
Q Consensus 243 s~rs~~~NA~~~G~~~-----~k~Ivl~d~Ll~~-------l~~~~El~aVlaHElgH~k~~H~ 294 (304)
++..+.+.|+++++.+ .+.+.+.-+.-.. + +.+++.+ +.||+||..|.-.
T Consensus 109 ~R~gK~~~a~~~~~~~~~~~~~~~~~i~~n~~~~~~~~~~ll-~~~~v~t-l~HE~GHa~h~~l 170 (365)
T cd06258 109 DRKGKYPHGFCTGLDPGFNRQDKDVRILANFTSPAAPDPVLL-GHDDINT-LFHEFGHAVHFLL 170 (365)
T ss_pred CCCCCCCCCeeccccCCCCCCCCeEEEEccCCCCCCCCCCcC-CHHHHHH-HHHHHhHHHHHHH
Confidence 3444678889988752 4666665554442 3 5666654 7899999987543
No 49
>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.
Probab=78.58 E-value=1.4 Score=42.72 Aligned_cols=46 Identities=28% Similarity=0.348 Sum_probs=28.4
Q ss_pred CCCCCcccEEEEccC--CCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCCH
Q 022024 243 STRSSHSNAYMYGFF--KNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHT 294 (304)
Q Consensus 243 s~rs~~~NA~~~G~~--~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H~ 294 (304)
++..+.+-||.+|++ ..++|+.+ .-. +.++ ...++||+||.-|...
T Consensus 191 ~r~gK~~gaf~~~~~~~~~p~i~~n--~~~---~~~~-v~tl~HE~GHa~h~~~ 238 (427)
T cd06459 191 PRKGKRSGAYCTGLPPGKHPFILMN--FNG---TLDD-VFTLAHELGHAFHSYL 238 (427)
T ss_pred CCCCCCCCeecCCCCCCCCCeEEec--CCC---Chhh-HHHHHHHhhHHHHHHH
Confidence 344566779999985 34444332 221 3455 4568999999876543
No 50
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=78.38 E-value=4.2 Score=35.04 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=20.2
Q ss_pred CEEEEcHhHHhhC-CCHHHHHHHHHHHHHHhh
Q 022024 260 KRIVLYDTLIQQC-KNDEEIVAVIAHELGHWK 290 (304)
Q Consensus 260 k~Ivl~d~Ll~~l-~~~~El~aVlaHElgH~k 290 (304)
..|.+........ ........++.||+||.-
T Consensus 94 g~i~~~~~~~~~~~~~g~~~~~t~~HEiGHaL 125 (186)
T cd04277 94 GDIWFNSSYDTNSDSPGSYGYQTIIHEIGHAL 125 (186)
T ss_pred ceeEEecCcccccCCCChhhHHHHHHHHHHHh
Confidence 4566655443321 135678999999999974
No 51
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=78.00 E-value=1.1 Score=37.14 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=20.5
Q ss_pred CCEEEEcHhHHhhC-CCHHHHHHHHHHHHHHh
Q 022024 259 NKRIVLYDTLIQQC-KNDEEIVAVIAHELGHW 289 (304)
Q Consensus 259 ~k~Ivl~d~Ll~~l-~~~~El~aVlaHElgH~ 289 (304)
...+.+.+.-.-.. .+..++..|+.||+||.
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~v~~HEiGHa 116 (154)
T PF00413_consen 85 SGDIHFNDDESWTIDDSGNDLQSVAIHEIGHA 116 (154)
T ss_dssp TTEEEEETTSHEESSSSSEEHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhhhhhhhhhhhccccc
Confidence 45666654432111 15568999999999997
No 52
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=77.98 E-value=11 Score=37.67 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHhhhhhHHHHhccCCccchhHHHHHHHHHHHHHHhchhch
Q 022024 65 VHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPF 126 (304)
Q Consensus 65 ~~~~~~~~~~~~~l~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~~l~~lPf 126 (304)
+....+++..+++++-|+.||+.|++- +|-.++.++.+++-+|.
T Consensus 543 w~a~~~Lia~~L~L~iGliPWiDN~aH------------------lfG~i~GLl~s~~~~PY 586 (652)
T KOG2290|consen 543 WRAFFHLIATLLVLCIGLIPWIDNWAH------------------LFGTIFGLLTSIIFLPY 586 (652)
T ss_pred HHHHHHHHHHHHHHHhccccchhhHHH------------------HHHHHHHHHHHHHhhcc
Confidence 345677778888888899999987652 34456677777888883
No 53
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily. TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.
Probab=77.50 E-value=1.5 Score=39.95 Aligned_cols=17 Identities=47% Similarity=0.442 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHHHhh
Q 022024 274 NDEEIVAVIAHELGHWK 290 (304)
Q Consensus 274 ~~~El~aVlaHElgH~k 290 (304)
.+.+.+.++||||||--
T Consensus 163 ~~~~~a~t~AHElGHnl 179 (244)
T cd04270 163 PTKESDLVTAHELGHNF 179 (244)
T ss_pred chhHHHHHHHHHHHHhc
Confidence 35568899999999964
No 54
>PF14247 DUF4344: Domain of unknown function (DUF4344)
Probab=77.24 E-value=7.7 Score=34.97 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=29.9
Q ss_pred CcccEEEEccCCCCEEEEcHhHHhhC--------C--------CHHHHHHHHHHHHHHhh
Q 022024 247 SHSNAYMYGFFKNKRIVLYDTLIQQC--------K--------NDEEIVAVIAHELGHWK 290 (304)
Q Consensus 247 ~~~NA~~~G~~~~k~Ivl~d~Ll~~l--------~--------~~~El~aVlaHElgH~k 290 (304)
+..|||.- +..+.|.+.-.+++.. . ..+-+..++.||+||.-
T Consensus 47 Ge~nA~yd--Pe~~~I~iCYEf~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~HE~GHAl 104 (220)
T PF14247_consen 47 GEDNAFYD--PENRSITICYEFVDEILDRFAKANDPDEEYGQAAIGNVLFTLYHELGHAL 104 (220)
T ss_pred CCCCCccC--CCCCEEEECHHHHHHHHHHHHhCCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 57899877 4578888877766442 0 22346789999999964
No 55
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=76.88 E-value=4.2 Score=28.76 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhHhHHHHHhhcCCCCCCCchHHHHHHHHHHHHcCCCCCc
Q 022024 185 LWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKK 236 (304)
Q Consensus 185 ~~~~~~~~~~~~~~~~p~~i~plf~~~~pl~~~~L~~~i~~l~~~~g~~~~~ 236 (304)
..++...++++...+||+++.|+.+ +|-+++.++. .|.|++.++
T Consensus 8 ~~~~ggfVg~iG~a~Ypi~~~Pmm~-------~eeYk~~Q~~-nR~gI~qed 51 (58)
T PF15061_consen 8 ALFVGGFVGLIGAALYPIYFRPMMN-------PEEYKKEQKI-NRAGIKQED 51 (58)
T ss_pred hhhHHHHHHHHHHHHhhhhcccccC-------hHHHHHHHHH-HHhcccHhh
Confidence 3444555667778889998888775 4445555554 445665443
No 56
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=75.34 E-value=2.5 Score=37.65 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=24.8
Q ss_pred CcccEEEEccCCCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhh
Q 022024 247 SHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (304)
Q Consensus 247 ~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k 290 (304)
...-|+.-|.+...++.+..+ .. ..-+-..++|||+||.-
T Consensus 118 ~~G~A~~g~~C~~~~~~~~~d---~~-~~~~~~~~~AHElGH~l 157 (220)
T cd04272 118 TGGYAYVGGACTENRVAMGED---TP-GSYYGVYTMTHELAHLL 157 (220)
T ss_pred ccceEeecCccCCCceeEeec---CC-CCcccHHHHHHHHHHHh
Confidence 346788888874445443321 11 11245899999999965
No 57
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=75.08 E-value=1.7 Score=37.91 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=23.4
Q ss_pred cccEEEEccCCC-CEEEEcHhHHhhCCCHHHHHHHHHHHHHHhh
Q 022024 248 HSNAYMYGFFKN-KRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (304)
Q Consensus 248 ~~NA~~~G~~~~-k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k 290 (304)
..-|+..|.|.. +...+...-- - +......++|||+||.-
T Consensus 103 ~G~a~~~~~C~~~~s~~i~~~~~--~-~~~~~a~~~AHelGH~l 143 (199)
T PF01421_consen 103 VGLAYVGGMCSPSRSCGIVEDHS--R-SGLSFAVIIAHELGHNL 143 (199)
T ss_dssp SEEE-TT-TTSTTTSEEEEE-SS--S-SHHHHHHHHHHHHHHHT
T ss_pred eeeEeCCCCCCcCCCCcEeeecc--c-hhHHHHHHHHHHHHHhc
Confidence 355777777633 3333332211 3 67889999999999963
No 58
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=74.47 E-value=2.2 Score=36.11 Aligned_cols=40 Identities=33% Similarity=0.277 Sum_probs=22.3
Q ss_pred CcccEEEEccCCCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhh
Q 022024 247 SHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (304)
Q Consensus 247 ~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k 290 (304)
...|||--| .+++..|+--....+-..=.=|+|||++|-.
T Consensus 108 ~~~NAfW~g----~~m~yGdG~~~~f~~~~~~lDVvaHEltHGV 147 (150)
T PF01447_consen 108 NYNNAFWNG----SQMVYGDGDGQIFKPFASSLDVVAHELTHGV 147 (150)
T ss_dssp STT-EEE-S----SSEEEE---SSSBS-GGG-HHHHHHHHHHHH
T ss_pred CccCccccC----CEEEEECCCCcccccCccccceeeecccccc
Confidence 578999875 4788887755333121222459999999953
No 59
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=74.29 E-value=1.7 Score=34.71 Aligned_cols=12 Identities=50% Similarity=0.717 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhh
Q 022024 279 VAVIAHELGHWK 290 (304)
Q Consensus 279 ~aVlaHElgH~k 290 (304)
..+++||+||.-
T Consensus 108 ~~~~~HEiGH~l 119 (124)
T PF13582_consen 108 VDTFAHEIGHNL 119 (124)
T ss_dssp TTHHHHHHHHHT
T ss_pred ceEeeehhhHhc
Confidence 389999999963
No 60
>PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase M43 (cytophagalysin family, clan MA(M)), subfamily M43. The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example of this family is the pregnancy-associated plasma protein A (PAPP-A), which cleaves insulin-like growth factor (IGF) binding protein-4 (IGFBP-4), causing a dramatic reduction in its affinity for IGF-I and -II. Through this mechanism, PAPP-A is a regulator of IGF bioactivity in several systems, including the Homo sapiens ovary and the cardiovascular system [, , , ].; PDB: 3LUN_A 3LUM_B 2J83_A 2CKI_A.
Probab=73.16 E-value=1.8 Score=36.64 Aligned_cols=59 Identities=22% Similarity=0.315 Sum_probs=26.9
Q ss_pred cEEEEeCCCC-CCcccEEEEccCCC-------CEEEEcHhHHh-hCCCHHHHHHHHHHHHHHhh-cCCHH
Q 022024 236 KLFVVDGSTR-SSHSNAYMYGFFKN-------KRIVLYDTLIQ-QCKNDEEIVAVIAHELGHWK-LNHTM 295 (304)
Q Consensus 236 ~i~v~~~s~r-s~~~NA~~~G~~~~-------k~Ivl~d~Ll~-~l~~~~El~aVlaHElgH~k-~~H~~ 295 (304)
+|+|++.... ....++-...+|.. ..|++....+. .. +.....-+++||+|||- ..|.+
T Consensus 19 NIwv~~~~~~~g~~~~~G~A~~P~~~~~~~~~~~vv~~~~~l~~~~-~~~~~g~TltHEvGH~LGL~HtF 87 (154)
T PF05572_consen 19 NIWVVNDLYDGGGTSILGYAYFPWSGMSDNGTDGVVINYRYLGGNN-SQYNFGKTLTHEVGHWLGLYHTF 87 (154)
T ss_dssp EEEEES-EE-TTS-EESEEE--TTS-GGG-SEEEEGGGSSSSTT---TTS-SSHHHHHHHHHHTT---TT
T ss_pred EEEEecccccCCCCCCCeEEeCCCCCCCCCCCCEEEEcCcccCCCC-Cccccccchhhhhhhhhcccccc
Confidence 7899873211 12233333434332 23444322222 22 45566789999999996 34443
No 61
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=72.53 E-value=7.9 Score=36.45 Aligned_cols=43 Identities=23% Similarity=0.460 Sum_probs=36.3
Q ss_pred hcCCCCCCCchH-HHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEc
Q 022024 207 LFNKFTPLPEGE-LREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYG 255 (304)
Q Consensus 207 lf~~~~pl~~~~-L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G 255 (304)
.++++.|++||+ +++.+.++|++.|++ .+|++.+. ..|+-+.|
T Consensus 9 a~Y~f~~i~dp~~~~~~l~~~~~~~~vk-GrillA~E-----GINgtvsG 52 (308)
T COG1054 9 AYYKFVPIEDPEALRDPLLALCKALGVK-GRILLAHE-----GINGTVSG 52 (308)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHcCce-eEEEEccC-----CcceeEec
Confidence 467899999854 899999999999986 58999764 68999987
No 62
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=72.33 E-value=2.8 Score=36.32 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHHHHhh
Q 022024 274 NDEEIVAVIAHELGHWK 290 (304)
Q Consensus 274 ~~~El~aVlaHElgH~k 290 (304)
+..+-.-++|||+||--
T Consensus 138 ~~~~~~~~~AHEiGH~l 154 (196)
T PF13688_consen 138 PTYNGAITFAHEIGHNL 154 (196)
T ss_dssp -HHHHHHHHHHHHHHHT
T ss_pred CCCceehhhHHhHHHhc
Confidence 56788899999999963
No 63
>cd06460 M32_Taq Peptidase family M32 is a subclass of metallocarboxypeptidases which are distributed mainly in bacteria and archaea, and contain a HEXXH motif that coordinates a divalent cation such as Zn2+ or Co2+, so far only observed in the active site of neutral metallopeptidases but not in carboxypeptidases. M32 includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). Novel peptidases from protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, are the first eukaryotic M32 enzymes identified so far, thus making these enzymes an attractive potential target for drug development against these o
Probab=72.31 E-value=6.2 Score=38.69 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=43.1
Q ss_pred CCCCchHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEccCCCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhc
Q 022024 212 TPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKL 291 (304)
Q Consensus 212 ~pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~ 291 (304)
++.+.+.-++.-+++++.+|++..+-. +|.+ ++.|++|+++ ..+-++...-+. +.-.=..-++||+||-.+
T Consensus 102 ~~~~~~~Q~~~~~~~~~~~g~df~~gr-iD~s-----~hpF~~~~~~-~dvRItt~y~~~--d~~~~l~t~iHE~GHaly 172 (396)
T cd06460 102 GPFPEEKQEALGRELLEALGFDFDRGR-LDVS-----AHPFTGGLGP-GDVRITTRYDEN--DFRSALFSTIHETGHALY 172 (396)
T ss_pred CCCCHHHHHHHHHHHHHHhCCcccCCe-eecC-----CCCCCCCCCC-CCceEEeeeCCc--chHHHHHHHHHHhhHHHH
Confidence 345555566667788999998865433 3433 4468888742 244444332211 112233467899999887
Q ss_pred CC
Q 022024 292 NH 293 (304)
Q Consensus 292 ~H 293 (304)
..
T Consensus 173 e~ 174 (396)
T cd06460 173 EQ 174 (396)
T ss_pred Hh
Confidence 66
No 64
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=72.14 E-value=6.1 Score=40.13 Aligned_cols=59 Identities=32% Similarity=0.345 Sum_probs=38.0
Q ss_pred HHHHHHHcCCCC----CcEEEEeCCCCCCcccEEEEccCCCCE-EEEcHhHHhhCCCHHHHHHHHHHHHHHhhcC
Q 022024 223 IEKLASSLKFPL----KKLFVVDGSTRSSHSNAYMYGFFKNKR-IVLYDTLIQQCKNDEEIVAVIAHELGHWKLN 292 (304)
Q Consensus 223 i~~l~~~~g~~~----~~i~v~~~s~rs~~~NA~~~G~~~~k~-Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~ 292 (304)
+.+.|+++.-|. -++.++..|-. +-|+ .++. ..++.+++. .++.+.-|+|||++|-=.|
T Consensus 239 ~L~~Ae~l~GpY~WgryDllvlPpSFP-------~gGM-ENPcltF~TpTlla---GDrsl~~vIaHEIAHSWtG 302 (613)
T KOG1047|consen 239 FLKAAEKLFGPYVWGRYDLLVLPPSFP-------FGGM-ENPCLTFVTPTLLA---GDRSLVDVIAHEIAHSWTG 302 (613)
T ss_pred HHHHHHHHcCCcccccceEEEecCCCC-------cccc-cCcceeeecchhhc---CCcchhhHHHHHhhhhhcc
Confidence 334456665553 37888876532 2344 3444 567777774 4677899999999996544
No 65
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=72.03 E-value=10 Score=32.92 Aligned_cols=64 Identities=25% Similarity=0.283 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHcCCC---CCcEEEEeCCCCCCcccEEEEccCC-CCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhh
Q 022024 217 GELREKIEKLASSLKFP---LKKLFVVDGSTRSSHSNAYMYGFFK-NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (304)
Q Consensus 217 ~~L~~~i~~l~~~~g~~---~~~i~v~~~s~rs~~~NA~~~G~~~-~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k 290 (304)
|..+-.++++ ++.|=+ ...|...+-+. ...-|+.+ .+.|+|-.+-+ .+.++++-+|+|||-|..
T Consensus 16 p~v~fl~~~~-~~~gc~~~~~~~i~c~~C~~------~~~Ggf~p~~~~I~lC~N~~---~~~~~l~~~l~HELIHay 83 (173)
T PF09768_consen 16 PTVRFLMEAL-KKLGCPPVPPRHIKCEPCDS------SVSGGFDPSKKGIVLCQNRI---RSQGHLEDTLTHELIHAY 83 (173)
T ss_pred cHHHHHHHHH-HHcCCCCCCCCCeEEEECcC------CCcCCccCCCCCEEEeeCCC---CCHHHHHHHHHHHHHHHH
Confidence 4444444443 456644 33555544331 13344544 77888876655 388999999999999975
No 66
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.01 E-value=4.5 Score=38.34 Aligned_cols=76 Identities=22% Similarity=0.310 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHcCCCCC--c----EEEEeC-CCCCCcccEEEEccCCCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHh
Q 022024 217 GELREKIEKLASSLKFPLK--K----LFVVDG-STRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHW 289 (304)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~~--~----i~v~~~-s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~ 289 (304)
.+++.+.+++.+...|..- + ++.+.. ..+|....+-.+ ..-++.......-++ +.+|+.|.+-||+-|+
T Consensus 5 e~~~k~flr~~~es~f~l~~~~~ffa~~Li~~k~i~s~~~~~a~t---~~~~~y~NPei~~~~-p~~~~~aLl~HEV~Hi 80 (396)
T COG3864 5 EEFRKKFLRFIEESNFDLMNEDNFFALFLIQIKDIASACETKAST---SYFTMYFNPEIFLNC-PISEMKALLKHEVYHI 80 (396)
T ss_pred HHHHHHHHHHhccCCceeeccchhhhhhhhhhccchhHHHhhccC---CceEEEeCHHHHccC-CHHHHHHHHHHHHHHH
Confidence 4567777777776655431 1 112211 111222222222 356888999999999 9999999999999999
Q ss_pred hcCCHHH
Q 022024 290 KLNHTMY 296 (304)
Q Consensus 290 k~~H~~~ 296 (304)
..+|+.+
T Consensus 81 ~l~Hi~r 87 (396)
T COG3864 81 MLNHIKR 87 (396)
T ss_pred HHHHHHh
Confidence 9999863
No 67
>COG1164 Oligoendopeptidase F [Amino acid transport and metabolism]
Probab=71.55 E-value=2.2 Score=44.11 Aligned_cols=46 Identities=30% Similarity=0.409 Sum_probs=29.2
Q ss_pred CCCCcccEEEEccCC--CCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCCHH
Q 022024 244 TRSSHSNAYMYGFFK--NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 295 (304)
Q Consensus 244 ~rs~~~NA~~~G~~~--~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H~~ 295 (304)
++.+.+-||+.|..+ .++|.++ ... +.+. ..+|+||+||-.|....
T Consensus 350 ~~gKrsGaYs~~~~~~~~p~IlmN--~~g---t~~d-V~TLaHElGHs~Hs~~s 397 (598)
T COG1164 350 RKGKRSGAYSIGFYKGDHPFILMN--YDG---TLRD-VFTLAHELGHSVHSYFS 397 (598)
T ss_pred CCCCCCCcccCCCCCCCCCeEEEe--CCC---chhH-HHHHHHHccHHHHHHHH
Confidence 345788899999854 3444332 222 2333 46899999999886443
No 68
>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This entry contains peptidases belonging to MEROPS peptidase family U49 (Lit peptidase, clan U-). The Lit peptidase from Escherichia coli functions in bacterial cell death in response to infection by Enterobacteria phage T4. Following binding of Gol peptide to domains II and III of elongation factor Tu, the Lit peptidase cleaves domain I of the elongation factor. This prevents binding of guanine nucleotides, shuts down translation and leads to cell death.
Probab=71.31 E-value=2.7 Score=37.45 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhcCCHHH
Q 022024 276 EEIVAVIAHELGHWKLNHTMY 296 (304)
Q Consensus 276 ~El~aVlaHElgH~k~~H~~~ 296 (304)
--+..+++||++|+..+|.-.
T Consensus 99 ~A~~fil~HE~~Hv~~~h~~~ 119 (206)
T PF10463_consen 99 CAIAFILLHELAHVVLGHEGD 119 (206)
T ss_pred HHHHHHHHHHHHHHHHcCccc
Confidence 356789999999999999765
No 69
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=70.83 E-value=2.2 Score=36.74 Aligned_cols=41 Identities=27% Similarity=0.222 Sum_probs=19.4
Q ss_pred CcccEEEEccCCCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhh
Q 022024 247 SHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (304)
Q Consensus 247 ~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k 290 (304)
...=|++-|.|..++.. .++.....+.-.+ -++|||+||.-
T Consensus 83 ~~Gla~~g~~c~~~~~~--~g~~~~~~~~~~~-~~~aHElGH~l 123 (173)
T PF13574_consen 83 GGGLAYVGGVCSKGYKA--TGLSSPYGDFFGI-DTFAHELGHQL 123 (173)
T ss_dssp CCSSEEE-CCCCTCCCE---CCCS--TTSHHH-HHHHHHHHHHH
T ss_pred CccEEEEeEeCcCCCEE--EEEEcCCCceeee-eeehhhhHhhc
Confidence 34557777776433322 1111111021233 45999999964
No 70
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=70.46 E-value=2.1 Score=35.99 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=20.8
Q ss_pred CCCEEEEcHhHHhhC---CCHHHHHHHHHHHHHHhh
Q 022024 258 KNKRIVLYDTLIQQC---KNDEEIVAVIAHELGHWK 290 (304)
Q Consensus 258 ~~k~Ivl~d~Ll~~l---~~~~El~aVlaHElgH~k 290 (304)
....|.+.+.-.-.. .+...+..|+.|||||.-
T Consensus 84 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~HEiGHaL 119 (157)
T cd04278 84 IGGDIHFDDDEQWTLGSDSGGTDLFSVAAHEIGHAL 119 (157)
T ss_pred cceeEEECCCcccccCCCCccchHHHHHHHHhcccc
Confidence 355666655332111 034679999999999963
No 71
>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family. The M3 family of metallopeptidases contains several distinct clades. Oligoendopeptidase F as characterized in Lactococcus, the functionally equivalent oligoendopeptidase B of group B Streptococcus, and closely related sequences are described by TIGR00181. The present family is quite similar but forms a distinct clade, and a number of species have one member of each. A greater sequence difference separates members of TIGR02289, probable oligoendopeptidases of the M3 family that probably should not be designated PepF.
Probab=70.06 E-value=2.7 Score=43.19 Aligned_cols=45 Identities=22% Similarity=0.406 Sum_probs=28.6
Q ss_pred CCCCCcccEEEEccCC--CCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCC
Q 022024 243 STRSSHSNAYMYGFFK--NKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNH 293 (304)
Q Consensus 243 s~rs~~~NA~~~G~~~--~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H 293 (304)
+++.+.+.||.+|+.+ .++|+++ .-. +.+++ ..++||+||..|..
T Consensus 344 ~r~gK~~Ga~~~~~~~~~~p~i~~N--~~~---~~~~v-~TL~HE~GHa~H~~ 390 (587)
T TIGR02290 344 PRPGKRGGAFCTGFPPSKEPRVLMN--YDG---SRRDV-STLAHELGHAYHSE 390 (587)
T ss_pred CCCCCCCCcccCCCCCCCCCEEEEe--cCC---CchhH-HHHHHHhhHHHHHH
Confidence 3445678899999753 3555443 111 33444 45899999998854
No 72
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=67.80 E-value=2.1 Score=37.02 Aligned_cols=38 Identities=26% Similarity=0.203 Sum_probs=22.3
Q ss_pred cccEEEEccCC-CCEEEE-cHhHHhhCCCHHHHHHHHHHHHHHhh
Q 022024 248 HSNAYMYGFFK-NKRIVL-YDTLIQQCKNDEEIVAVIAHELGHWK 290 (304)
Q Consensus 248 ~~NA~~~G~~~-~k~Ivl-~d~Ll~~l~~~~El~aVlaHElgH~k 290 (304)
..-|++-|.+. .....+ .++ - ...+...++|||+||.-
T Consensus 106 ~G~a~~~~~C~~~~~~~v~~~~----~-~~~~~~~~~aHElGH~l 145 (192)
T cd04267 106 LGLAYVGSMCNPYSSVGVVEDT----G-FTLLTALTMAHELGHNL 145 (192)
T ss_pred eeeecccCCCCCCCCeEEEecC----C-cceeehhhhhhhHHhhc
Confidence 45577777642 222222 221 1 24567889999999985
No 73
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=67.35 E-value=2.9 Score=39.97 Aligned_cols=69 Identities=23% Similarity=0.292 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCCCcccEEEEccCCCCEEEEcHhHH-hh--CC---CHHHHHHHHHHHHHHhh
Q 022024 219 LREKIEKLASSLKFP--LKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLI-QQ--CK---NDEEIVAVIAHELGHWK 290 (304)
Q Consensus 219 L~~~i~~l~~~~g~~--~~~i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll-~~--l~---~~~El~aVlaHElgH~k 290 (304)
..+.++-+.+..|.| .+++-++--+. -..+ |+..-.-|.+.+..+ .. .. ...++..++|||++|.=
T Consensus 234 ~~~~l~~~~~~~g~~yp~~k~~~v~~p~--~~~~----~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqW 307 (390)
T PF01433_consen 234 APKALEYYEEYFGIPYPFKKLDIVAVPD--FPFG----GMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQW 307 (390)
T ss_dssp HHHHHHHHHHHHTS--SSSEEEEEEEST---SSS----EE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHhhccccceecceeEEEEec--cccc----cccccccccccccccccCcccccchhhhhhHHHHHHHHHHHH
Confidence 455666666778865 35544433221 0011 222233445554433 11 00 24589999999999986
Q ss_pred cCC
Q 022024 291 LNH 293 (304)
Q Consensus 291 ~~H 293 (304)
-|+
T Consensus 308 fGn 310 (390)
T PF01433_consen 308 FGN 310 (390)
T ss_dssp BTT
T ss_pred hcc
Confidence 554
No 74
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=66.63 E-value=11 Score=40.61 Aligned_cols=19 Identities=42% Similarity=0.314 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhhcCC
Q 022024 275 DEEIVAVIAHELGHWKLNH 293 (304)
Q Consensus 275 ~~El~aVlaHElgH~k~~H 293 (304)
.+.++.|+|||++|-=.|+
T Consensus 280 ~~~i~~VIaHElaHqWfGN 298 (863)
T TIGR02414 280 YERIESVIAHEYFHNWTGN 298 (863)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3458899999999965554
No 75
>PRK01415 hypothetical protein; Validated
Probab=65.91 E-value=15 Score=33.60 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=36.6
Q ss_pred hcCCCCCCCchH-HHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEcc
Q 022024 207 LFNKFTPLPEGE-LREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGF 256 (304)
Q Consensus 207 lf~~~~pl~~~~-L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~ 256 (304)
.|+++.|++|++ +++.+.+.|++.|+. .+|++.+. ..|+-..|-
T Consensus 9 ~fY~f~~i~~~~~~~~~l~~~~~~~~~~-G~i~la~E-----GIN~tisg~ 53 (247)
T PRK01415 9 SAYSFVNIEEPANLIPKLLLIGKRKYVR-GTILLANE-----GFNGSFSGS 53 (247)
T ss_pred EEEccccCCCHHHHHHHHHHHHHHcCCe-eEEEEccC-----ccceEeeCC
Confidence 577999999855 899999999999985 68999764 579988873
No 76
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=65.52 E-value=4.5 Score=37.51 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=20.0
Q ss_pred HhHHhhC--CCHHHHHHHHHHHHHHhh
Q 022024 266 DTLIQQC--KNDEEIVAVIAHELGHWK 290 (304)
Q Consensus 266 d~Ll~~l--~~~~El~aVlaHElgH~k 290 (304)
|.+++.+ ++++++...|-||++|.|
T Consensus 183 DPlLstmlr~dd~~lA~LIFHELAHQk 209 (376)
T COG4324 183 DPLLSTMLRQDDTYLASLIFHELAHQK 209 (376)
T ss_pred cHHHHHHhcCChHHHHHHHHHHHhhhe
Confidence 5555543 389999999999999976
No 77
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=65.09 E-value=94 Score=32.97 Aligned_cols=57 Identities=14% Similarity=0.324 Sum_probs=31.1
Q ss_pred HHHHHhchhchhhhhhceeecccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022024 116 MLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIV 174 (304)
Q Consensus 116 ~l~~~l~~lPf~~Y~~f~le~~~g~~~~t~~~~~~d~~k~~~l~~vl~~~l~~~~~~l~ 174 (304)
.++..++++|.+||++...-+- .++..--.-+++.+.+.+++.++-.+...+...++
T Consensus 232 ~~~~hll~Lpl~~f~~r~~Ge~--~sR~~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm 288 (709)
T COG2274 232 RFFRHLLRLPLSYFEKRSVGEI--ISRVRELEQIREFLTGSILTLIIDLLFALIFLAVM 288 (709)
T ss_pred HHHHHHHcCcHHHccCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999875433110 12222223455555555566666555554444443
No 78
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=63.73 E-value=3 Score=34.87 Aligned_cols=16 Identities=50% Similarity=0.565 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 022024 275 DEEIVAVIAHELGHWK 290 (304)
Q Consensus 275 ~~El~aVlaHElgH~k 290 (304)
..+...+++||+||.-
T Consensus 93 ~~~~~~~~~HElGH~L 108 (167)
T cd00203 93 TKEGAQTIAHELGHAL 108 (167)
T ss_pred cccchhhHHHHHHHHh
Confidence 4578999999999974
No 79
>PRK14015 pepN aminopeptidase N; Provisional
Probab=63.43 E-value=14 Score=39.99 Aligned_cols=18 Identities=44% Similarity=0.383 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 022024 276 EEIVAVIAHELGHWKLNH 293 (304)
Q Consensus 276 ~El~aVlaHElgH~k~~H 293 (304)
..++.|+|||++|-=.|+
T Consensus 294 ~~i~~vIaHElaHqWFGN 311 (875)
T PRK14015 294 ERIESVIAHEYFHNWTGN 311 (875)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 348899999999965554
No 80
>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like
Probab=62.29 E-value=20 Score=31.68 Aligned_cols=11 Identities=45% Similarity=0.682 Sum_probs=9.1
Q ss_pred HHHHHHHHHhh
Q 022024 280 AVIAHELGHWK 290 (304)
Q Consensus 280 aVlaHElgH~k 290 (304)
.+++||+||.-
T Consensus 139 ~~~aHEiGH~l 149 (206)
T PF13583_consen 139 QTFAHEIGHNL 149 (206)
T ss_pred hHHHHHHHHHh
Confidence 45999999974
No 81
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=61.83 E-value=16 Score=35.23 Aligned_cols=68 Identities=19% Similarity=0.321 Sum_probs=44.4
Q ss_pred CCCCchHHHHHHHHHHHHc----CCCCCcEEEEeCCCCCCcccEEEEccCCCCEEEEcHhHHhhCCCHHHHHHHHHHHHH
Q 022024 212 TPLPEGELREKIEKLASSL----KFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELG 287 (304)
Q Consensus 212 ~pl~~~~L~~~i~~l~~~~----g~~~~~i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~aVlaHElg 287 (304)
..++..+..+.+++.+++. +++ .+|-+.|+ --++|.+.| .+|.|..+. .. ++.++++.+-||+|
T Consensus 107 ~~~~a~~~~~~~~~~~~~y~~~~~~~-~~V~~sdd----l~a~A~v~~----~~l~I~~~~--~f-s~~~l~~L~~HEig 174 (349)
T PF08014_consen 107 KTLDAEEAVSRLQERLKKYFGKEGFE-VKVELSDD----LLARAMVSG----DRLKINKNA--MF-SERDLEALLHHEIG 174 (349)
T ss_pred cCCCHHHHHHHHHHHHHHHhcccCce-EEEEEcCC----cchhhcccC----CeeEEcCCC--Cc-CHHHHHHHHHHhhh
Confidence 3455677788888887776 443 24444443 346776553 347776643 25 89999999999996
Q ss_pred -Hhhc
Q 022024 288 -HWKL 291 (304)
Q Consensus 288 -H~k~ 291 (304)
|+-.
T Consensus 175 vH~lt 179 (349)
T PF08014_consen 175 VHLLT 179 (349)
T ss_pred hhhcc
Confidence 5543
No 82
>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup. The adamalysin_like or ADAM (A Disintegrin And Metalloprotease) family of metalloproteases are integral membrane proteases acting on a variety of extracellular targets. They are involved in shedding soluble peptides or proteins from the cell surface. This subfamily contains fungal ADAMs, whose precise function has yet to be determined.
Probab=61.24 E-value=3 Score=37.64 Aligned_cols=11 Identities=55% Similarity=0.752 Sum_probs=9.6
Q ss_pred HHHHHHHHHhh
Q 022024 280 AVIAHELGHWK 290 (304)
Q Consensus 280 aVlaHElgH~k 290 (304)
.++||||||--
T Consensus 147 ~t~AHElGHnL 157 (228)
T cd04271 147 QVFAHEIGHTF 157 (228)
T ss_pred eehhhhhhhhc
Confidence 58999999975
No 83
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=61.12 E-value=2.1 Score=43.45 Aligned_cols=41 Identities=34% Similarity=0.417 Sum_probs=27.6
Q ss_pred CcccEEEEccCCCCEEEEcHhHHhhCC-CH--------HHHHHHHHHHHHHh
Q 022024 247 SHSNAYMYGFFKNKRIVLYDTLIQQCK-ND--------EEIVAVIAHELGHW 289 (304)
Q Consensus 247 ~~~NA~~~G~~~~k~Ivl~d~Ll~~l~-~~--------~El~aVlaHElgH~ 289 (304)
...|||-- +....||.+-.+|+.-. ++ --|-|||||||||-
T Consensus 449 q~VNAYYn--p~~N~IVFPAAILQ~PFfd~ea~~a~NYGgIGaVIgHEI~Hg 498 (654)
T COG3590 449 QTVNAYYN--PQKNEIVFPAAILQAPFFDPEADSAANYGGIGAVIGHEIGHG 498 (654)
T ss_pred HHhhhhcC--CCCceEeeeHHhcCCCCCCCCcchhhcccCccceehhhhccc
Confidence 35688765 34566777777775421 11 24889999999995
No 84
>KOG3314 consensus Ku70-binding protein [Replication, recombination and repair]
Probab=61.03 E-value=8.5 Score=33.10 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=29.4
Q ss_pred ccCCCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCCHH
Q 022024 255 GFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 295 (304)
Q Consensus 255 G~~~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H~~ 295 (304)
|+-+++-|++-++-+ .+.+++.-|++|||-|.--.|-+
T Consensus 71 Gy~~~~gIvlCqN~l---~~q~h~n~vv~HElIH~fDd~r~ 108 (194)
T KOG3314|consen 71 GYTPGRGIVLCQNRL---TIQDHVNQVVIHELIHAFDDCRA 108 (194)
T ss_pred CccCCCceEEecccc---chHHHHHHHHHHHHHHHHHhhhh
Confidence 344667799888765 37899999999999998765544
No 85
>COG3824 Predicted Zn-dependent protease [General function prediction only]
Probab=61.01 E-value=7 Score=31.87 Aligned_cols=31 Identities=29% Similarity=0.580 Sum_probs=20.5
Q ss_pred CEEEEcHhHH-hhCCC-----HHHHHHHHHHHHHHhh
Q 022024 260 KRIVLYDTLI-QQCKN-----DEEIVAVIAHELGHWK 290 (304)
Q Consensus 260 k~Ivl~d~Ll-~~l~~-----~~El~aVlaHElgH~k 290 (304)
.||-++...+ +...+ .|++.-|+-||+||.-
T Consensus 85 ~rItlYRrailDywae~eetlgd~vthvliHEIgHhF 121 (136)
T COG3824 85 DRITLYRRALLDYWAENEETLGDQVTHVLIHEIGHHF 121 (136)
T ss_pred ceeeeeHHHHHHHHhhhhhhHhhHhhhhhhhhhhhhc
Confidence 5777776644 44411 2567788999999974
No 86
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=60.34 E-value=12 Score=29.40 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=22.5
Q ss_pred CCEEEEcHhHHhh-CCCH----HHHHHHHHHHHHHhhcCC
Q 022024 259 NKRIVLYDTLIQQ-CKND----EEIVAVIAHELGHWKLNH 293 (304)
Q Consensus 259 ~k~Ivl~d~Ll~~-l~~~----~El~aVlaHElgH~k~~H 293 (304)
..||+++..=+.. ..+. +++.-++-||+||+-.-+
T Consensus 49 p~rI~lyR~pl~~~~~~~~eL~~~I~~tlvhEiah~fG~~ 88 (97)
T PF06262_consen 49 PDRIVLYRRPLERRARSREELAELIRDTLVHEIAHHFGIS 88 (97)
T ss_dssp -EEEEEEHHHHHHT-SSHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CCEEEEehHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4788888776544 3444 456678889999986543
No 87
>cd06456 M3A_DCP_Oligopeptidase_A Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70) enzyme. DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from E. coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). Oligopeptidase A (OpdA) may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala.
Probab=60.21 E-value=9.2 Score=37.76 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=30.8
Q ss_pred CCCCCcccEEEEccCCC--------CEEEEcHhHHh-------hCCCHHHHHHHHHHHHHHhhcCCH
Q 022024 243 STRSSHSNAYMYGFFKN--------KRIVLYDTLIQ-------QCKNDEEIVAVIAHELGHWKLNHT 294 (304)
Q Consensus 243 s~rs~~~NA~~~G~~~~--------k~Ivl~d~Ll~-------~l~~~~El~aVlaHElgH~k~~H~ 294 (304)
++..+.++|+..++.+. +.+++.-+.-. .+ +-+|+.. +.||+||.-|+..
T Consensus 160 ~R~~K~~ga~~~~~~~~~~~~~~~~P~~~l~~nf~~~~~~~p~lL-~~~~v~t-LfHEfGHalH~~l 224 (422)
T cd06456 160 AREGKRGGAWMNNLRSQSKNGLGQKPVAYLVCNFTKPAGGKPALL-THDEVTT-LFHEFGHALHHLL 224 (422)
T ss_pred CCCCCCCCceeecccccccCCCCCCCEEEEECCCCCCCCCCCCcc-CHHHHHH-HHHHHHHHHHHHH
Confidence 45567788998887432 33444222221 23 6667654 7899999987654
No 88
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=59.88 E-value=1.1e+02 Score=25.92 Aligned_cols=88 Identities=15% Similarity=0.151 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHhHHHHHhhc-CCCCCCCchHHHHHHHHHHH
Q 022024 150 RDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLF-NKFTPLPEGELREKIEKLAS 228 (304)
Q Consensus 150 ~d~~k~~~l~~vl~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~i~plf-~~~~pl~~~~L~~~i~~l~~ 228 (304)
.|.++-.++..++.+.++.++.++-.+....+-=...++.+.+.+++ .+ -+.... ++..-=+-+....-++.+|+
T Consensus 15 ~~~~~~~~i~~ll~~l~~~~~~Y~r~r~~tKyRDL~II~~L~ll~l~-gi---q~~~y~~~~~~~~q~~~~~~fi~~vA~ 90 (149)
T PF11694_consen 15 NDYLRYILIIILLLVLIFFFIKYLRNRLDTKYRDLSIIALLLLLLLI-GI---QYSDYQQNQNQHSQSSQMVHFIESVAK 90 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHH-HH---HHHHHHHHhhhHhHHHHHHHHHHHHHH
Confidence 34555555556666666677777766666665422222222111111 11 111111 01111123567778999999
Q ss_pred HcCCCCCcEEEEe
Q 022024 229 SLKFPLKKLFVVD 241 (304)
Q Consensus 229 ~~g~~~~~i~v~~ 241 (304)
+.|.+.++|+|-.
T Consensus 91 ~~~V~~~~v~VNs 103 (149)
T PF11694_consen 91 DLGVSKEEVYVNS 103 (149)
T ss_pred HhCCChheEEEec
Confidence 9999999999854
No 89
>PRK13267 archaemetzincin-like protein; Reviewed
Probab=59.66 E-value=38 Score=29.43 Aligned_cols=53 Identities=19% Similarity=0.314 Sum_probs=28.2
Q ss_pred cEEEEeCCCCCCcccEEEEccC--CCCEEEEcHhHHhhC----CC-----HHHHHHHHHHHHHHh
Q 022024 236 KLFVVDGSTRSSHSNAYMYGFF--KNKRIVLYDTLIQQC----KN-----DEEIVAVIAHELGHW 289 (304)
Q Consensus 236 ~i~v~~~s~rs~~~NA~~~G~~--~~k~Ivl~d~Ll~~l----~~-----~~El~aVlaHElgH~ 289 (304)
-+.+.+.+--. ....|+.|.. ..+.-|++..-++.- ++ .+-+.-..+||+||.
T Consensus 73 vl~vt~~DLy~-~~~nfvfG~a~~~~~~aVvS~~Rl~~~~~~~~~~~~l~~~R~~k~~~HElGH~ 136 (179)
T PRK13267 73 NIGITDCDLYY-RGLNFVFGLAYPNLRGAVISTYRLRPEFYGNKPDSELFEERVRKEVTHELGHT 136 (179)
T ss_pred EEEEEccccCC-CCCCceeEEeecCCCEEEEEccccChhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 45555544332 3456899974 334445554433221 01 223445589999997
No 90
>PRK05320 rhodanese superfamily protein; Provisional
Probab=58.58 E-value=14 Score=34.08 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=35.7
Q ss_pred hcCCCCCCCchH-HHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEcc
Q 022024 207 LFNKFTPLPEGE-LREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGF 256 (304)
Q Consensus 207 lf~~~~pl~~~~-L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~ 256 (304)
.|+++.|++|++ +++.+.+.|++.|++ .+|++.+. ..|+-+.|-
T Consensus 7 ~~Y~f~~i~~~~~~~~~~~~~~~~~~~~-G~i~ia~e-----GiN~t~~g~ 51 (257)
T PRK05320 7 AAYKFVSLDDPETLRPLVLARCEALGLK-GTILLAPE-----GINLFLAGT 51 (257)
T ss_pred EEEceeecCCHHHHHHHHHHHHHHCCCe-EEEEEcCC-----CceEEEEee
Confidence 477999999855 899999999999986 68998753 578887763
No 91
>PF14891 Peptidase_M91: Effector protein
Probab=58.26 E-value=7.4 Score=33.49 Aligned_cols=17 Identities=29% Similarity=0.124 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhhc
Q 022024 275 DEEIVAVIAHELGHWKL 291 (304)
Q Consensus 275 ~~El~aVlaHElgH~k~ 291 (304)
+.+=..+|+|||+|..+
T Consensus 100 ~~~p~v~L~HEL~HA~~ 116 (174)
T PF14891_consen 100 PRPPFVVLYHELIHAYD 116 (174)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45667899999999875
No 92
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=58.22 E-value=16 Score=39.31 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCCC--CcE--EEEeCCCCCCcccEEEEccCCCCEEEEcHhHHhhCC----CHHHHHHHHHHHHHHhhc
Q 022024 220 REKIEKLASSLKFPL--KKL--FVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCK----NDEEIVAVIAHELGHWKL 291 (304)
Q Consensus 220 ~~~i~~l~~~~g~~~--~~i--~v~~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l~----~~~El~aVlaHElgH~k~ 291 (304)
++.++-+-+..|+|. ++. ..+++ .++. |+-.-..|...+..+..-+ ..+.+..|+|||++|.=-
T Consensus 229 ~~~l~~~e~~fg~pYP~~k~d~V~vP~------f~~G--aMEn~Glit~~e~~l~~~~~~~~~~~~~~~viaHElAHqWF 300 (831)
T TIGR02412 229 RQGLAFFHRKFGYPYPFKKYDQIFVPE------FNAG--AMENAGCVTFAENFLHRAEATRAEKENRAGVILHEMAHMWF 300 (831)
T ss_pred HHHHHHHHHHhCCCCCcccCCEEEcCC------CCCC--cccccceeeechhhccCCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 445555667788653 443 33332 1111 2212234555555442110 234577899999999765
Q ss_pred CC
Q 022024 292 NH 293 (304)
Q Consensus 292 ~H 293 (304)
|+
T Consensus 301 Gn 302 (831)
T TIGR02412 301 GD 302 (831)
T ss_pred CC
Confidence 53
No 93
>TIGR02421 QEGLA conserved hypothetical protein. Members of this family include a possible metal-binding motif HEXXXH and, nearby, a perfectly conserved motif QEGLA. All members belong to the Proteobacteria, including Agrobacterium tumefaciens and several species of Vibrio and Pseudomonas, and are found in only one copy per chromosome (Vibrio vulnificus, with two chromosomes, has two). The function is unknown.
Probab=57.73 E-value=19 Score=34.99 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=45.1
Q ss_pred CCCchHHHHHHHHHHHHcCCCC-CcEEEEeCCCCCCcccEEEEccCCCCEEEEcHhHHhhCCCHHHHHHHHHHHHH
Q 022024 213 PLPEGELREKIEKLASSLKFPL-KKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELG 287 (304)
Q Consensus 213 pl~~~~L~~~i~~l~~~~g~~~-~~i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~aVlaHElg 287 (304)
+++.++..+.+++.+++.+... .+|.+.|+ -.++|.+.| ++|.|..+.. . ++.++++++-||+|
T Consensus 133 ~~~A~~a~~~~~~~~~~y~~~~~~~V~~sd~----l~a~a~v~~----~~l~i~~~a~--f-s~~~l~~L~~HEig 197 (366)
T TIGR02421 133 PVSATEAAEILQQRLEDYFGEETIRVTLSDD----LPAGAMVSG----DKLKLNSDAM--F-SERDLEALIHHEIG 197 (366)
T ss_pred CcCHHHHHHHHHHHHHHhCCCCceEEEECcc----hhHHHhccC----CeEEECCCCC--c-CHHHHHHHHHHhHH
Confidence 4556889999999999988752 24443332 235666553 3677776543 5 99999999999998
No 94
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=55.58 E-value=1.3e+02 Score=26.88 Aligned_cols=63 Identities=21% Similarity=0.141 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEccCCCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhcCC
Q 022024 222 KIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNH 293 (304)
Q Consensus 222 ~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~H 293 (304)
.-+.+.+..|+.--+|-.+++ .-|+|-. |++|.+-+++.-...- --.-.||-|||.||.-..+
T Consensus 45 vAr~iLd~nGl~dV~Ve~v~G-~LTDHYD------P~~kvvrLSe~~y~g~--Sia~~aVAAHEVGHAiQd~ 107 (226)
T COG2738 45 VARMILDENGLYDVPVEEVPG-TLTDHYD------PRRKVVRLSEANYYGP--SIAAIAVAAHEVGHAIQDQ 107 (226)
T ss_pred HHHHHHhhcCCccceeeeecC-CcccccC------hhhheeeccccccCCc--cHHHHHHHHHHhhHHHhhh
Confidence 333455677875334444433 1223311 3556666666654433 3345689999999976554
No 95
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=55.18 E-value=5.8 Score=32.38 Aligned_cols=12 Identities=58% Similarity=0.722 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhh
Q 022024 279 VAVIAHELGHWK 290 (304)
Q Consensus 279 ~aVlaHElgH~k 290 (304)
.+|++||+||.-
T Consensus 87 ~~~~~HEigHaL 98 (140)
T smart00235 87 TGVAAHELGHAL 98 (140)
T ss_pred cccHHHHHHHHh
Confidence 459999999973
No 96
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=55.15 E-value=23 Score=38.32 Aligned_cols=75 Identities=23% Similarity=0.292 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHcCCCC--Cc-EEEEeCCCCCCcccEEEEccCCCCEEEEc-HhHHhhCCCHHHHHHHHHHHHHHhhcC
Q 022024 217 GELREKIEKLASSLKFPL--KK-LFVVDGSTRSSHSNAYMYGFFKNKRIVLY-DTLIQQCKNDEEIVAVIAHELGHWKLN 292 (304)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~--~~-i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~-d~Ll~~l~~~~El~aVlaHElgH~k~~ 292 (304)
.++++.++-.-+..|.|. ++ +.-++...-..--|.-...+ ..+++... ++.-+. +-+.++.|+|||++|-=.|
T Consensus 245 ~~~~~~~~~~e~~fg~~y~l~~~~V~v~~f~~GaMEN~Gl~tf-~~~~ll~~~~~at~~--~~~~~~~viaHElaHqWfG 321 (859)
T COG0308 245 DETKRSIEFYEEYFGLPYALPIDIVAVPDFSAGAMENWGLVTF-REKYLLADPETATDS--DYENVEEVIAHELAHQWFG 321 (859)
T ss_pred HHHHHHhhhHHHhcCCCCCCcccEEeccCCCCccccccceeEE-eeeEEeeCcccchhH--HHHHHHHHHHHHHhhhccc
Confidence 446666666667788874 32 33333322223334333333 23443333 233222 3467788999999997666
Q ss_pred CH
Q 022024 293 HT 294 (304)
Q Consensus 293 H~ 294 (304)
+.
T Consensus 322 nl 323 (859)
T COG0308 322 NL 323 (859)
T ss_pred ce
Confidence 53
No 97
>PF09471 Peptidase_M64: IgA Peptidase M64; InterPro: IPR019026 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of highly selective metallo-endopeptidases belonging to the MEROPS peptidase family M64 (IgA peptidase, clan MA). The primary structure of the Clostridium ramosum IgA peptidase shows no significant overall similarity to any other known metallo-endopeptidase []. ; PDB: 3P1V_A 4DF9_D.
Probab=54.12 E-value=18 Score=33.44 Aligned_cols=16 Identities=31% Similarity=0.640 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHHHh
Q 022024 274 NDEEIVAVIAHELGHW 289 (304)
Q Consensus 274 ~~~El~aVlaHElgH~ 289 (304)
+.+.-..|+.||+||-
T Consensus 212 ~~~~~~~v~vHE~GHs 227 (264)
T PF09471_consen 212 DNPSFKQVVVHEFGHS 227 (264)
T ss_dssp TSTTHHHHHHHHHHHH
T ss_pred Ccccccceeeeecccc
Confidence 3447889999999994
No 98
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=52.22 E-value=1.2e+02 Score=24.31 Aligned_cols=41 Identities=27% Similarity=0.314 Sum_probs=28.3
Q ss_pred HHHHhHhHHHHHhhcCCCCCCCchHHHHHHHHHHHHcCCCCCcE
Q 022024 194 LVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKL 237 (304)
Q Consensus 194 ~~~~~~~p~~i~plf~~~~pl~~~~L~~~i~~l~~~~g~~~~~i 237 (304)
++..++.+.+++.+. +-+| |.-+.++++...++.|+..++.
T Consensus 60 ~l~v~~gg~~l~rlK-RGrP--e~yl~r~l~~~~~~~~l~~~~l 100 (111)
T TIGR03750 60 ILVVLIGGKLLARLK-RGKP--EGYLYRKLEWKLARLGLGRHRL 100 (111)
T ss_pred HHHHHHhHHHHHHHH-cCCC--chHHHHHHHHHHHHcCCCCCCe
Confidence 334556677666654 4566 7889999999999988754333
No 99
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=51.22 E-value=1.3e+02 Score=24.41 Aligned_cols=43 Identities=16% Similarity=0.109 Sum_probs=27.5
Q ss_pred HHHHHHHhHhHHHHHhhcCCCCCCCchHHHHHHHHHHHHcC-CCCCc
Q 022024 191 VLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLK-FPLKK 236 (304)
Q Consensus 191 ~~~~~~~~~~p~~i~plf~~~~pl~~~~L~~~i~~l~~~~g-~~~~~ 236 (304)
+..++..++.+.+++++. +-+| |.-+.++++...++.| +..++
T Consensus 60 l~~~~~v~~gg~~l~rlK-RGKP--~~yl~r~l~~~l~~~g~l~~~~ 103 (121)
T PF11990_consen 60 LGPILGVFVGGKLLARLK-RGKP--EGYLYRRLQWRLARRGPLGGSR 103 (121)
T ss_pred HHHHHHHHHhHHHHHHHH-cCCc--hhHHHHHHHHHHHHhcccCCCC
Confidence 333444556666666654 4555 6789999998888877 54333
No 100
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=50.95 E-value=13 Score=39.23 Aligned_cols=71 Identities=23% Similarity=0.172 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHH---H-cCC--CCCcEEEEe--CCCCCCcccEEEEccCC-CCEEEEcHhHHhhCCCHHHHHHHHHHHHH
Q 022024 217 GELREKIEKLAS---S-LKF--PLKKLFVVD--GSTRSSHSNAYMYGFFK-NKRIVLYDTLIQQCKNDEEIVAVIAHELG 287 (304)
Q Consensus 217 ~~L~~~i~~l~~---~-~g~--~~~~i~v~~--~s~rs~~~NA~~~G~~~-~k~Ivl~d~Ll~~l~~~~El~aVlaHElg 287 (304)
+++.+.+++..+ . +.. +.+..+++- ....+....||+.|++. ..+..+...-- - +....+.|+|||||
T Consensus 256 ~~~~~tL~~F~~wr~~~l~~r~~hD~a~L~~~~~~~~~~~G~a~~~~mCs~~~s~gv~~~~~--~-~~~~~a~v~Ahelg 332 (716)
T KOG3607|consen 256 EDLRETLHNFLKWRKSYLTTRLPHDAAHLLSGILFYGKYVGLAYFGGMCSPGHSGGVNKFHS--D-ILLAFAVVLAHELG 332 (716)
T ss_pred ccHHHHHHHHHHHHHhhccccCCCCceEEEEeeeccCceeceeecccccCcccccceeecCc--c-cchhHHHHHHHHHH
Confidence 455555555543 2 221 233444443 33445677899999863 24443321111 1 45778999999999
Q ss_pred Hhh
Q 022024 288 HWK 290 (304)
Q Consensus 288 H~k 290 (304)
|.-
T Consensus 333 H~l 335 (716)
T KOG3607|consen 333 HNL 335 (716)
T ss_pred hhc
Confidence 964
No 101
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=50.71 E-value=11 Score=33.11 Aligned_cols=15 Identities=40% Similarity=0.585 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhh
Q 022024 276 EEIVAVIAHELGHWK 290 (304)
Q Consensus 276 ~El~aVlaHElgH~k 290 (304)
.+..+++.||+||.-
T Consensus 90 ~~~~~~i~HElgHaL 104 (198)
T cd04327 90 PEFSRVVLHEFGHAL 104 (198)
T ss_pred hhHHHHHHHHHHHHh
Confidence 466789999999974
No 102
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=49.63 E-value=11 Score=33.21 Aligned_cols=31 Identities=26% Similarity=0.484 Sum_probs=21.9
Q ss_pred CEEEEcHhHHhhCC------CHHHHHHHHHHHHHHhh
Q 022024 260 KRIVLYDTLIQQCK------NDEEIVAVIAHELGHWK 290 (304)
Q Consensus 260 k~Ivl~d~Ll~~l~------~~~El~aVlaHElgH~k 290 (304)
..|.+..+.++... ..+-+.++++||+||.-
T Consensus 92 a~V~l~~~~~~~~~~~~~~~~~~~~~~~~~he~gh~l 128 (197)
T cd04276 92 ADVILYSGFLRQDQLWYEDLLAASLRYLLAHEVGHTL 128 (197)
T ss_pred EEEEeCchhhccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 44667777765531 23558899999999964
No 103
>PRK09672 phage exclusion protein Lit; Provisional
Probab=47.88 E-value=13 Score=35.10 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhhcCCHH
Q 022024 276 EEIVAVIAHELGHWKLNHTM 295 (304)
Q Consensus 276 ~El~aVlaHElgH~k~~H~~ 295 (304)
.-+..|+.||++|...+|..
T Consensus 163 ~A~a~i~~HEiaHv~~~h~~ 182 (305)
T PRK09672 163 CALAWILLHEIAHVEFQHSS 182 (305)
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 45788999999999999975
No 104
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=47.71 E-value=44 Score=27.38 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=41.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CChhhcccCCHHHHHHHHHhhhhhhhHHHHHH
Q 022024 2 VFPYMEAVVGFMILMYFFETYLDLRQHAALKLPK-LPKTLEGVISQEKFEKSRGYSLDKSHFHFVHE 67 (304)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~~~~L~~rq~~~~~~~~-~P~~l~~~~~~e~~~k~~~Y~~~k~~~~~~~~ 67 (304)
+.||.+.++++..+..++...|.-|+++.-+++| .|. +.=++|.......=.++...+..++.
T Consensus 32 ~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANRnrK~~~~---~k~~pE~~~~~es~~kd~~sL~~l~e 95 (125)
T PF15048_consen 32 ATPWNYSILALSFVVLVISFFLLGRSIQANRNRKMQPQ---EKQTPEVLSLDESGLKDDNSLNILRE 95 (125)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhHhccccccccc---cccCHHHhhcccccccccccccHHHH
Confidence 4689999999999999999999999999876543 332 22234433333332445555544443
No 105
>COG4823 AbiF Abortive infection bacteriophage resistance protein [Defense mechanisms]
Probab=46.61 E-value=13 Score=34.33 Aligned_cols=14 Identities=57% Similarity=0.738 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHH
Q 022024 275 DEEIVAVIAHELGH 288 (304)
Q Consensus 275 ~~El~aVlaHElgH 288 (304)
+-|++.|+||++||
T Consensus 89 Et~iKs~iAyllg~ 102 (299)
T COG4823 89 ETEIKSVIAYLLGH 102 (299)
T ss_pred HHHHHHHHHHHhcc
Confidence 67899999999999
No 106
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=46.58 E-value=3.8 Score=36.09 Aligned_cols=37 Identities=30% Similarity=0.296 Sum_probs=23.1
Q ss_pred CcccEEEEccCC-CCEEEEc-HhHHhhCCCHHHHHHHHHHHHHHhh
Q 022024 247 SHSNAYMYGFFK-NKRIVLY-DTLIQQCKNDEEIVAVIAHELGHWK 290 (304)
Q Consensus 247 ~~~NA~~~G~~~-~k~Ivl~-d~Ll~~l~~~~El~aVlaHElgH~k 290 (304)
...-|++-|.|. .....+. |+ .-....++|||+||--
T Consensus 114 ~~G~A~~ggiC~~~~s~~i~~~~-------~~~~a~~~aHElGH~L 152 (207)
T cd04273 114 TLGLAPVGGMCSPSRSCSINEDT-------GLSSAFTIAHELGHVL 152 (207)
T ss_pred ceEEeccccCCCCCcceEEEcCC-------CceeEEeeeeechhhc
Confidence 455688888864 3333333 32 1234689999999964
No 107
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=46.14 E-value=55 Score=33.14 Aligned_cols=69 Identities=22% Similarity=0.265 Sum_probs=38.4
Q ss_pred CCCchHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEccCCCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhh
Q 022024 213 PLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWK 290 (304)
Q Consensus 213 pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k 290 (304)
+.+...-++.-+.+++.+|++..+-.. |.| .|| |.+|++ ...|-+|+..-+.- .-.-..=..||.||--
T Consensus 203 ~~~~~~Q~~~~~~~~~~~G~d~~~grl-d~s---~HP--Ft~~~~-~~DvRiTTry~e~d--~~~~l~s~iHE~GHal 271 (494)
T PF02074_consen 203 PFPEEKQKAFSRELLEYLGFDFDRGRL-DES---AHP--FTTGFG-PNDVRITTRYDEDD--FLSALFSTIHETGHAL 271 (494)
T ss_dssp B--HHHHHHHHHHHHHHHT--GCGEEE-EE----SS---EEEEEE-TTEEEEEE--BTTB--THHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCccceEE-ecC---CCC--CCCCCC-CCceeeeccccccc--HHHHHHHHHHHHHHHH
Confidence 444455566777888999999877555 433 354 566665 35677776655432 3333334469999964
No 108
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=45.91 E-value=12 Score=35.84 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=20.4
Q ss_pred cHhHHhhC--CCHHHHHHHHHHHHHHhh
Q 022024 265 YDTLIQQC--KNDEEIVAVIAHELGHWK 290 (304)
Q Consensus 265 ~d~Ll~~l--~~~~El~aVlaHElgH~k 290 (304)
.|.+++.+ .++.|+..+|=||++|-.
T Consensus 150 ~DPlLSt~l~~~~~~LA~LIfHELaHq~ 177 (337)
T PF10023_consen 150 DDPLLSTMLRYPDGELARLIFHELAHQT 177 (337)
T ss_pred CCcccccccCCCchHHHHHHHHHHhhce
Confidence 45666554 289999999999999954
No 109
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=44.88 E-value=17 Score=25.80 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=19.9
Q ss_pred ChhhcccCCHHHHHHHHHhhhhhh
Q 022024 37 PKTLEGVISQEKFEKSRGYSLDKS 60 (304)
Q Consensus 37 P~~l~~~~~~e~~~k~~~Y~~~k~ 60 (304)
|--+.+.+.+|+|+|.|+++++..
T Consensus 24 pi~~~Pmm~~eeYk~~Q~~nR~gI 47 (58)
T PF15061_consen 24 PIYFRPMMNPEEYKKEQKINRAGI 47 (58)
T ss_pred hhhcccccChHHHHHHHHHHHhcc
Confidence 555677899999999999999754
No 110
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]
Probab=44.35 E-value=1.1e+02 Score=28.75 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=24.7
Q ss_pred chhHHHHHHHHHHHHHHhchhchhhhhhc
Q 022024 104 EILHTLSFLAGVMLWSQLTDLPFSLYSTF 132 (304)
Q Consensus 104 ~~~~~~~f~~~~~l~~~l~~lPf~~Y~~f 132 (304)
.+++++...++.+++.-++..|+.||-.-
T Consensus 67 v~~~Sl~iA~~~T~~~lligyP~Ay~la~ 95 (287)
T COG1176 67 VLLRSLWIAALVTLICLLLGYPVAYFLAR 95 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46888888889999999999999998664
No 111
>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.
Probab=43.87 E-value=15 Score=32.59 Aligned_cols=14 Identities=43% Similarity=0.634 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhh
Q 022024 277 EIVAVIAHELGHWK 290 (304)
Q Consensus 277 El~aVlaHElgH~k 290 (304)
=..+|+.||+||..
T Consensus 37 l~~~v~iHElgH~~ 50 (208)
T cd06161 37 LFLSVLLHELGHAL 50 (208)
T ss_pred HHHHHHHHHHHHHH
Confidence 46789999999974
No 112
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=43.87 E-value=34 Score=35.46 Aligned_cols=28 Identities=43% Similarity=0.399 Sum_probs=18.6
Q ss_pred EEEcHhHHhhCCCHHHHHHHHHHHHHHhhcC
Q 022024 262 IVLYDTLIQQCKNDEEIVAVIAHELGHWKLN 292 (304)
Q Consensus 262 Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~~ 292 (304)
...+++++. .+.+...|+|||++|-=-|
T Consensus 266 tf~~~~ll~---~d~s~~~viaHElAHqWfG 293 (601)
T TIGR02411 266 TFATPTLIA---GDRSNVDVIAHELAHSWSG 293 (601)
T ss_pred eeecccccc---CChhhhhhHHHHHHhhccC
Confidence 344555553 3345678999999997555
No 113
>PRK06298 type III secretion system protein; Validated
Probab=43.74 E-value=3e+02 Score=26.64 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=17.2
Q ss_pred chHHHHHHHHHHHH-------cCCCCCcEEEEe
Q 022024 216 EGELREKIEKLASS-------LKFPLKKLFVVD 241 (304)
Q Consensus 216 ~~~L~~~i~~l~~~-------~g~~~~~i~v~~ 241 (304)
||+++.+++++.++ .+.|..++.+.|
T Consensus 231 dP~iK~rrR~~~re~~~~~m~~~V~~AdVVItN 263 (356)
T PRK06298 231 NPEIKGRRRQIAQEIAYEDTSSQVKHASAVVSN 263 (356)
T ss_pred CHHHHHHHHHHHHHHHHhHHhhcCCCCcEEEEC
Confidence 58888777776544 245556777776
No 114
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=42.64 E-value=48 Score=30.77 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=18.3
Q ss_pred chHHHHHHHHHHHHHHHHHhHhHH
Q 022024 179 PYLAIYLWAFMFVLSLVMMTLYPV 202 (304)
Q Consensus 179 ~~~~l~~~~~~~~~~~~~~~~~p~ 202 (304)
+.||++++.+.++++++.++.||.
T Consensus 27 P~ww~~~f~~~i~~~~~y~~~yp~ 50 (285)
T TIGR00782 27 PRWWLWTFYATIVWGFGYLVAYPA 50 (285)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567888888888888777777774
No 115
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=41.83 E-value=2.7e+02 Score=27.08 Aligned_cols=28 Identities=18% Similarity=0.276 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022024 140 FNKQTIWLFFRDMIKGMILAIVLGPPIV 167 (304)
Q Consensus 140 ~~~~t~~~~~~d~~k~~~l~~vl~~~l~ 167 (304)
|+.+|.-.+++..+|..+++.+....+-
T Consensus 138 Fs~~~~vEllKsllKi~~v~~v~~~~l~ 165 (363)
T COG1377 138 FSLQTLVELLKSLLKIVLVGLVAYFVLK 165 (363)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777776666554443
No 116
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=41.27 E-value=17 Score=31.68 Aligned_cols=19 Identities=32% Similarity=0.163 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHHHhhcC
Q 022024 274 NDEEIVAVIAHELGHWKLN 292 (304)
Q Consensus 274 ~~~El~aVlaHElgH~k~~ 292 (304)
+=.-+-++|||||+|.-..
T Consensus 32 ~yg~lG~ilahel~hafd~ 50 (206)
T PF01431_consen 32 NYGGLGFILAHELMHAFDP 50 (206)
T ss_dssp HHHTHHHHHHHHHHHCTST
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567899999999997544
No 117
>PHA00527 hypothetical protein
Probab=40.86 E-value=40 Score=26.83 Aligned_cols=72 Identities=21% Similarity=0.320 Sum_probs=39.7
Q ss_pred hHHHHHhhcCCCCCCCchHHHHHHHHHHHHcCCCCCcEEEEeCC-----CCCCcccEEEEccCCCCEEEEcHhHHhhCCC
Q 022024 200 YPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGS-----TRSSHSNAYMYGFFKNKRIVLYDTLIQQCKN 274 (304)
Q Consensus 200 ~p~~i~plf~~~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~s-----~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~ 274 (304)
.|.+.-|+|...+-. --.-.++.++++.++|.+..+=-.+.+. ..+...|-+..|... +
T Consensus 9 ~Pr~~VPLF~S~~v~-~CR~~~EWQ~~~~~LGVD~~~~~mla~~~~S~~~s~~~~~L~~~GVFN--------G------- 72 (129)
T PHA00527 9 LPRFFVPLFHSANVY-LCRSKEEWQQACIHLGVDSGGNEMLAGATQSYCNTETGENLYLLGVFN--------G------- 72 (129)
T ss_pred CchhheeeeccceEE-EEcChHHHHHHHHHhCCCcCCchhhhccccccccccCCCeEEEEEEec--------c-------
Confidence 366777888644322 1122456777899999886422111111 112345666666432 1
Q ss_pred HHHHHHHHHHHHHHhh
Q 022024 275 DEEIVAVIAHELGHWK 290 (304)
Q Consensus 275 ~~El~aVlaHElgH~k 290 (304)
-.+-++||-+|..
T Consensus 73 ---K~~T~~HECAH~A 85 (129)
T PHA00527 73 ---KAATLVHECAHVA 85 (129)
T ss_pred ---HHHHHHHHHHHHH
Confidence 1356799999975
No 118
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=40.66 E-value=44 Score=23.00 Aligned_cols=25 Identities=24% Similarity=0.378 Sum_probs=19.7
Q ss_pred CchHHHHHHHHHHHHHHHHHhHhHH
Q 022024 178 GPYLAIYLWAFMFVLSLVMMTLYPV 202 (304)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~~~~~~p~ 202 (304)
.+.||++++...++++++....+|.
T Consensus 20 lP~ww~~~f~~tivfa~~Y~~~yp~ 44 (51)
T PF14715_consen 20 LPRWWLWLFYGTIVFAVGYLVLYPG 44 (51)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3578888888888888887777774
No 119
>COG5504 Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=40.54 E-value=18 Score=33.35 Aligned_cols=32 Identities=25% Similarity=0.184 Sum_probs=22.7
Q ss_pred CCCCEEEEcHhHHhhCCCHHHHHHHHHHHHHHhhc
Q 022024 257 FKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKL 291 (304)
Q Consensus 257 ~~~k~Ivl~d~Ll~~l~~~~El~aVlaHElgH~k~ 291 (304)
+....|+++-. ... |..++.|++|||..|..+
T Consensus 122 ~~~~ki~l~l~--p~~-~~~~v~aliaHE~HH~~R 153 (280)
T COG5504 122 GIPGKIMLWLV--PSS-TITSVPALIAHEYHHNCR 153 (280)
T ss_pred CcCceEEEEEe--cCC-CccchHHHHHHHHHhhhe
Confidence 34455665532 235 889999999999999754
No 120
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=40.38 E-value=1.5e+02 Score=25.39 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhHhHH
Q 022024 158 LAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLV-MMTLYPV 202 (304)
Q Consensus 158 l~~vl~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~-~~~~~p~ 202 (304)
+.+++..++..+..+......+.|+.+..++.+++..+ ..++.|.
T Consensus 25 ~~l~Ll~av~~~~~~~~~~~~~~w~~~a~~av~l~~~vv~l~iiP~ 70 (161)
T COG3402 25 IALVLLIAVAAGVLLYFVGLDPNWSSVAAVAVILLAAVVTLFIIPQ 70 (161)
T ss_pred HHHHHHHHHHHHHHHheeccCCccHHHHHHHHHHHHHHHHhhhhhH
Confidence 34445555555555544444456777766666555443 4555664
No 121
>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha
Probab=40.31 E-value=18 Score=32.62 Aligned_cols=15 Identities=40% Similarity=0.499 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhh
Q 022024 276 EEIVAVIAHELGHWK 290 (304)
Q Consensus 276 ~El~aVlaHElgH~k 290 (304)
-=..+|+.||+||..
T Consensus 51 ~l~~~v~iHElgH~~ 65 (227)
T cd06164 51 LLFASVLLHELGHSL 65 (227)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346789999999974
No 122
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=38.09 E-value=25 Score=31.49 Aligned_cols=19 Identities=32% Similarity=0.181 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q 022024 272 CKNDEEIVAVIAHELGHWKL 291 (304)
Q Consensus 272 l~~~~El~aVlaHElgH~k~ 291 (304)
+ +..-..+|+|||++|.-.
T Consensus 88 L-Prll~gsiLAHE~mHa~L 106 (212)
T PF12315_consen 88 L-PRLLTGSILAHELMHAWL 106 (212)
T ss_pred C-CHHHHhhHHHHHHHHHHh
Confidence 5 677779999999999753
No 123
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=37.97 E-value=1.7e+02 Score=21.97 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=27.8
Q ss_pred ceeecccCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022024 132 FVIEARHGFNKQTI-WLFFRDMIKGMILAIVLGPPIVSAIIIIV 174 (304)
Q Consensus 132 f~le~~~g~~~~t~-~~~~~d~~k~~~l~~vl~~~l~~~~~~l~ 174 (304)
+.+-+.-|++++.. +.++.+.+....++.+++.++........
T Consensus 30 ~~il~~lG~s~~~i~~~~~~e~~~~~~~~~~~g~~~~~~~~~~~ 73 (121)
T PF02687_consen 30 IAILRALGASKRQIRKMFLYEALLIALIGILIGILLGILLIIFL 73 (121)
T ss_pred HHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445568865554 56777777777777777766666655544
No 124
>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.
Probab=37.67 E-value=20 Score=33.15 Aligned_cols=15 Identities=40% Similarity=0.549 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhh
Q 022024 276 EEIVAVIAHELGHWK 290 (304)
Q Consensus 276 ~El~aVlaHElgH~k 290 (304)
-=..+|+.||+||..
T Consensus 116 aL~isv~iHElgHa~ 130 (263)
T cd06159 116 ALVVGVVVHELSHGI 130 (263)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346789999999973
No 125
>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.
Probab=37.52 E-value=21 Score=31.07 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 022024 275 DEEIVAVIAHELGHWK 290 (304)
Q Consensus 275 ~~El~aVlaHElgH~k 290 (304)
.-=+..+..||+||..
T Consensus 38 l~l~~~l~iHElgH~~ 53 (183)
T cd06160 38 LALLAILGIHEMGHYL 53 (183)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456678899999974
No 126
>PF11391 DUF2798: Protein of unknown function (DUF2798); InterPro: IPR021529 This family of proteins has no known function.
Probab=37.03 E-value=1.2e+02 Score=21.15 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=18.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022024 137 RHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQ 175 (304)
Q Consensus 137 ~~g~~~~t~~~~~~d~~k~~~l~~vl~~~l~~~~~~l~~ 175 (304)
..|++. .|+..+++++.++..+..|....+.-+.+
T Consensus 19 n~G~~~----~f~~~Wl~a~~~a~~vAfp~~l~v~P~v~ 53 (60)
T PF11391_consen 19 NVGFSD----GFFSRWLKAWLIAWPVAFPISLIVAPLVR 53 (60)
T ss_pred HhCCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447775 45555555555555555555554444433
No 127
>COG4227 Antirestriction protein [DNA replication, recombination, and repair]
Probab=36.92 E-value=20 Score=33.18 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHHHhhcCCH
Q 022024 273 KNDEEIVAVIAHELGHWKLNHT 294 (304)
Q Consensus 273 ~~~~El~aVlaHElgH~k~~H~ 294 (304)
.+...--+.++||+|||..+-.
T Consensus 198 ~da~~yyaTl~HElghwtgh~~ 219 (316)
T COG4227 198 RDAINYYATLLHELGHWTGHEA 219 (316)
T ss_pred cchHhHHHHHHHHhccccCchh
Confidence 3778889999999999976543
No 128
>COG3930 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.66 E-value=44 Score=32.32 Aligned_cols=74 Identities=11% Similarity=0.162 Sum_probs=39.4
Q ss_pred cCCCCCCCchHHHHHHH----HHHHHcCCCCCcEEEEeCCCCCCcccEEEEccCCCCEEEEcHhHHhhCCCHHHHHHHHH
Q 022024 208 FNKFTPLPEGELREKIE----KLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIA 283 (304)
Q Consensus 208 f~~~~pl~~~~L~~~i~----~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~aVla 283 (304)
..+-++.+++|+..+.+ .+.++.+- .-++|..+.. +-.+-|.+-|- .-++..+....+ + +++++.+++.
T Consensus 179 ~~~~k~~e~~E~~~~~qa~~~~v~k~~e~-~i~~~~~~~~--g~~Ara~v~~d-~pp~lli~~~t~--~-~~~~V~~Ll~ 251 (434)
T COG3930 179 KDEPKTLEAKEVVPILQADLNTVFKEEEE-MIRVYESDTA--GFVARAEVRDD-LPPTLLIRRDTL--M-EERRVRALLS 251 (434)
T ss_pred hhCCccccccccchHHHHHHHHHHHHhhh-eeeeeecCcc--chhhhHhhcCC-CCcceeehhhhh--c-CHHHHHHHHH
Confidence 34556666666643333 33333221 1245554421 12233333332 234666665554 4 8999999999
Q ss_pred HHHHH
Q 022024 284 HELGH 288 (304)
Q Consensus 284 HElgH 288 (304)
||+|=
T Consensus 252 HEigV 256 (434)
T COG3930 252 HEIGV 256 (434)
T ss_pred hhhhe
Confidence 99983
No 129
>PF04647 AgrB: Accessory gene regulator B; InterPro: IPR006741 The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein [] involved in the proteolytic processing of AgrD, and may have both proteolytic and transporter activities, facilitating the export of the processed AgrD peptide []. ; GO: 0016020 membrane
Probab=36.31 E-value=2.7e+02 Score=23.63 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=15.1
Q ss_pred HHhhcCCCCCCCchHHHHHHH
Q 022024 204 IAPLFNKFTPLPEGELREKIE 224 (304)
Q Consensus 204 i~plf~~~~pl~~~~L~~~i~ 224 (304)
..|.-++-+|++++|.++..+
T Consensus 118 ~aPv~~~~kpl~~~e~~~~~K 138 (185)
T PF04647_consen 118 YAPVDTPNKPLDSEEKRKKLK 138 (185)
T ss_pred hcccccccCcCChHHHHHHHH
Confidence 467777888998877666544
No 130
>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.
Probab=36.13 E-value=22 Score=33.20 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhh
Q 022024 277 EIVAVIAHELGHWK 290 (304)
Q Consensus 277 El~aVlaHElgH~k 290 (304)
=+.+|+.||+||..
T Consensus 134 l~isvvvHElgHal 147 (277)
T cd06162 134 LLISGVVHEMGHGV 147 (277)
T ss_pred HHHHHHHHHHHHHH
Confidence 46789999999974
No 131
>PF06836 DUF1240: Protein of unknown function (DUF1240); InterPro: IPR010665 This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.
Probab=35.74 E-value=25 Score=27.44 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhchhchhhhhhceee
Q 022024 110 SFLAGVMLWSQLTDLPFSLYSTFVIE 135 (304)
Q Consensus 110 ~f~~~~~l~~~l~~lPf~~Y~~f~le 135 (304)
=++..++.++.++++|+++|-++.+.
T Consensus 44 ~~l~~i~I~~~IlS~~~SfYv~~kL~ 69 (95)
T PF06836_consen 44 KYLAIIAIISFILSFFFSFYVDYKLK 69 (95)
T ss_pred HHHHHHHHHHHHHHhHhheeEeeEec
Confidence 35667788999999999999999985
No 132
>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than Pfam model pfam05547.
Probab=35.48 E-value=9.8 Score=35.47 Aligned_cols=12 Identities=75% Similarity=0.839 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHh
Q 022024 278 IVAVIAHELGHW 289 (304)
Q Consensus 278 l~aVlaHElgH~ 289 (304)
-..|+|||+||.
T Consensus 165 ~igv~~HE~gH~ 176 (286)
T TIGR03296 165 GVGVIAHELGHD 176 (286)
T ss_pred ceeeeehhhhcc
Confidence 369999999995
No 133
>cd04275 ZnMc_pappalysin_like Zinc-dependent metalloprotease, pappalysin_like subfamily. The pregnancy-associated plasma protein A (PAPP-A or pappalysin-1) cleaves insulin-like growth factor-binding proteins 4 and 5, thereby promoting cell growth by releasing bound growth factor. This model includes pappalysins and related metalloprotease domains from all three kingdoms of life. The three-dimensional structure of an archaeal representative, ulilysin, has been solved.
Probab=34.99 E-value=6 Score=35.71 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=17.6
Q ss_pred EEEEcHhHHhhC-CCHHHHHHHHHHHHHHhh
Q 022024 261 RIVLYDTLIQQC-KNDEEIVAVIAHELGHWK 290 (304)
Q Consensus 261 ~Ivl~d~Ll~~l-~~~~El~aVlaHElgH~k 290 (304)
.|++....+..- .++-...-++.||+|||-
T Consensus 119 Gvvi~~~~~~~~~~~~~n~g~t~~HEvGH~l 149 (225)
T cd04275 119 GVVINPSSLPGGSAAPYNLGDTATHEVGHWL 149 (225)
T ss_pred eEEEeccccCCCCcccccccceeEEecccee
Confidence 455544444322 012345678999999995
No 134
>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=34.43 E-value=2.8e+02 Score=23.34 Aligned_cols=25 Identities=8% Similarity=0.062 Sum_probs=14.3
Q ss_pred hchhhhhhceeecccCCCCCCHHHHH
Q 022024 124 LPFSLYSTFVIEARHGFNKQTIWLFF 149 (304)
Q Consensus 124 lPf~~Y~~f~le~~~g~~~~t~~~~~ 149 (304)
....-|--..+.+.+| ++.|.+..+
T Consensus 76 v~i~a~~i~~~~~~~~-~~~s~~~~~ 100 (170)
T PF06930_consen 76 VFIMAYLIHWMMKTFG-GRPSYKKCL 100 (170)
T ss_pred HHHHHHHHHHHHHHcC-CCCCHHHHH
Confidence 4444555555677777 666654443
No 135
>PF04138 GtrA: GtrA-like protein; InterPro: IPR007267 Members of this entry belong to the GtrA family and are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane []. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyses the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b) []. This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and Listeria monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose [].; GO: 0000271 polysaccharide biosynthetic process, 0006810 transport, 0016021 integral to membrane
Probab=32.97 E-value=2.3e+02 Score=21.80 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=19.0
Q ss_pred hceeecccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022024 131 TFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIII 172 (304)
Q Consensus 131 ~f~le~~~g~~~~t~~~~~~d~~k~~~l~~vl~~~l~~~~~~ 172 (304)
.|.+.+++=|+++..... .++...+.+..+++.++-.+...
T Consensus 43 ~f~ln~~~tF~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~ 83 (117)
T PF04138_consen 43 NFILNRRFTFRSRGRSSR-WRQFLRFFVVYLLGLLLNTLILW 83 (117)
T ss_pred HHHHHHHHhccCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556655555444 33333343444444444444443
No 136
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=32.56 E-value=4.1e+02 Score=24.59 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=11.9
Q ss_pred CchHHHHHHHHHHHHc
Q 022024 215 PEGELREKIEKLASSL 230 (304)
Q Consensus 215 ~~~~L~~~i~~l~~~~ 230 (304)
+|++..+++++..++.
T Consensus 210 ~~~~~~~~I~~~i~~~ 225 (299)
T PRK09509 210 LPDEERQEIIDIVTSW 225 (299)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 3677888888888764
No 137
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=32.54 E-value=4.6e+02 Score=25.25 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=22.2
Q ss_pred chHHHHHHHHHHHHc-------CCCCCcEEEEeCCCCCCcccEEEE
Q 022024 216 EGELREKIEKLASSL-------KFPLKKLFVVDGSTRSSHSNAYMY 254 (304)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~~~s~rs~~~NA~~~ 254 (304)
||+++.+++++.++. +.|..++.+.|- |..+-|.-+
T Consensus 230 dP~iK~rrR~~~re~~~~~m~~~V~~AdVVItNP---TH~AVAL~Y 272 (349)
T PRK12721 230 DPEIKQKRRELQSEIQSGSLANNVKKSTAVVRNP---THIAVCLYY 272 (349)
T ss_pred CHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEcC---CceEEEEEe
Confidence 688888877776642 455567888763 234444444
No 138
>smart00793 AgrB Accessory gene regulator B. The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein PUBMED:11195102. AgrB is involved in the proteolyt
Probab=32.28 E-value=3.3e+02 Score=23.45 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=17.9
Q ss_pred HHhhcCCCCCCCchHHHHHHHHHH
Q 022024 204 IAPLFNKFTPLPEGELREKIEKLA 227 (304)
Q Consensus 204 i~plf~~~~pl~~~~L~~~i~~l~ 227 (304)
.+|.-++-+|+.++|.+...+..+
T Consensus 118 ~APv~~~~kpi~~~e~~k~lk~~s 141 (184)
T smart00793 118 YAPADTEKQPVIPEKLKKKLKKKS 141 (184)
T ss_pred cCCcccccCCCCCHHHHHHHHHHH
Confidence 467788889999888877665443
No 139
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=32.19 E-value=1.3e+02 Score=21.88 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEccC-CCCEEEEcHhHHhhCCCHHHHHHHHH
Q 022024 221 EKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFF-KNKRIVLYDTLIQQCKNDEEIVAVIA 283 (304)
Q Consensus 221 ~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~-~~k~Ivl~d~Ll~~l~~~~El~aVla 283 (304)
+.++.+.++++.+ ++-+.. +...|.+ ..+.+++.+.....+ +++.++.++.
T Consensus 19 ~l~~~l~~~L~~~--~v~l~~---------~~ClG~C~~gP~v~V~~~~~~~~-t~~~i~~~~~ 70 (72)
T cd03082 19 ELLAALEAGLGPE--GVRVVR---------APCVGRCERAPAALVGQRPVDGA-TPAAVAAAVE 70 (72)
T ss_pred HHHHHHHHHhCCC--eEEEEe---------cCcCCccCCCCeEEECCEEeCCc-CHHHHHHHHh
Confidence 3444455566654 443332 3467764 789999999999999 9999988764
No 140
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=31.29 E-value=2.9e+02 Score=24.00 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHhHHHHHhhcCCCCCCCchHHHHHHHHHHH
Q 022024 154 KGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLAS 228 (304)
Q Consensus 154 k~~~l~~vl~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~i~plf~~~~pl~~~~L~~~i~~l~~ 228 (304)
.+.+.-.++.+....+-+.+.++....|.=.+.+ .+...++.. ...|+|...+|+.+=+....+.++|-
T Consensus 72 igi~~~gv~Si~aAllY~~~l~k~~g~W~Gi~YG-~~~W~ivF~-----~lnP~fp~~~~~~~l~~nTiiT~~Ci 140 (173)
T PF11085_consen 72 IGIVFIGVFSIVAALLYYALLKKFKGPWPGILYG-LAWWAIVFF-----VLNPIFPMIKPVTELDWNTIITTLCI 140 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH-HHHHHHHHH-----HhcccccCChhhhhCchhHHHHHHHH
Confidence 3444444444444444456777775554322222 222222222 34566666667766566667777774
No 141
>COG0772 FtsW Bacterial cell division membrane protein [Cell division and chromosome partitioning]
Probab=30.81 E-value=2.5e+02 Score=27.42 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHHHh
Q 022024 274 NDEEIVAVIAHELGHW 289 (304)
Q Consensus 274 ~~~El~aVlaHElgH~ 289 (304)
..|=+-||+|+|+|=+
T Consensus 269 hTDFIfavi~EE~G~i 284 (381)
T COG0772 269 HTDFIFAVIGEEFGFI 284 (381)
T ss_pred ccchhHHHHHHHHHHH
Confidence 6789999999999954
No 142
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=30.56 E-value=4.2e+02 Score=24.13 Aligned_cols=25 Identities=16% Similarity=0.414 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 022024 5 YMEAVVGFMILMYFFETYLDLRQHA 29 (304)
Q Consensus 5 ~~~~~~~~~~~~~l~~~~L~~rq~~ 29 (304)
|..++++..++...+-.+...|..|
T Consensus 25 ~~~~filYfiv~~~i~~~~~~Rs~r 49 (233)
T PF09973_consen 25 YFEVFILYFIVFFGIMIVMGIRSYR 49 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 5567777777777778888888888
No 143
>PRK01530 hypothetical protein; Reviewed
Probab=29.77 E-value=2.5e+02 Score=22.30 Aligned_cols=53 Identities=23% Similarity=0.311 Sum_probs=35.2
Q ss_pred CCCCchHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEccCCCCEEEEcHhHHhhCCCHHHHHHHH
Q 022024 212 TPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVI 282 (304)
Q Consensus 212 ~pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~aVl 282 (304)
.|.+...=++.++-+++.+|+|..+|-++.+.+ .+.|+|.+.+ . +++|+.-.+
T Consensus 48 pPvdGkAN~ali~~LAk~l~v~ks~I~IvsG~t------------SR~K~i~I~g-----~-~~~~l~~~l 100 (105)
T PRK01530 48 IPEQGKANEEIINYLAKEWKLSRSNIEIIKGHT------------HSLKTILIKN-----I-NEDYLNLII 100 (105)
T ss_pred CCCCChHHHHHHHHHHHHhCCChhhEEEEecCC------------CCceEEEEeC-----C-CHHHHHHHH
Confidence 344433345667778889999999999987642 1566666544 4 677766554
No 144
>PRK00523 hypothetical protein; Provisional
Probab=29.19 E-value=53 Score=24.29 Aligned_cols=15 Identities=7% Similarity=-0.029 Sum_probs=8.9
Q ss_pred HHHHHHHHHcCCCCC
Q 022024 221 EKIEKLASSLKFPLK 235 (304)
Q Consensus 221 ~~i~~l~~~~g~~~~ 235 (304)
+.++.+..+.|-++.
T Consensus 43 ~mir~M~~QMGqKPS 57 (72)
T PRK00523 43 NMIRAMYMQMGRKPS 57 (72)
T ss_pred HHHHHHHHHhCCCcc
Confidence 455556666776653
No 145
>cd06457 M3A_MIP Peptidase M3 mitochondrial intermediate peptidase (MIP; EC 3.4.24.59) belongs to the widespread subfamily M3A, that show similarity to the Thimet oligopeptidase (TOP). It is one of three peptidases responsible for the proteolytic processing of both, nuclear and mitochondrial encoded precursor polypeptides targeted to the various subcompartments of the mitochondria. It cleaves intermediate-size proteins initially processed by mitochondrial processing peptidase (MPP) to yield a processing intermediate with a typical N-terminal octapeptide that is sequentially cleaved by MIP to mature-size protein. MIP cleaves precursor proteins of respiratory components, including subunits of the electron transport chain and tri-carboxylic acid cycle enzymes, and components of the mitochondrial genetic machinery, including ribosomal proteins, translation factors, and proteins required for mitochondrial DNA metabolism. It has been suggested that the human MIP (HMIP polypeptide; gene symbo
Probab=28.66 E-value=36 Score=33.93 Aligned_cols=20 Identities=25% Similarity=0.369 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHHHHHhhcCC
Q 022024 272 CKNDEEIVAVIAHELGHWKLNH 293 (304)
Q Consensus 272 l~~~~El~aVlaHElgH~k~~H 293 (304)
+ +.+|+. .++||+||.-|+-
T Consensus 244 L-~~~~v~-TLfHEfGHalH~~ 263 (458)
T cd06457 244 L-SPHEVE-TLFHEMGHAMHSM 263 (458)
T ss_pred c-CHHHHH-HHHHHHhHHHHHH
Confidence 5 778877 5899999998843
No 146
>PF06861 BALF1: BALF1 protein; InterPro: IPR010677 Epstein-Barr virus (strain GD1) (HHV-4), a human tumour DNA virus and a prominent member of gamma-herpesviruses, encodes homologues of cellular antiapoptotic viral Bcl-2 proteins BALF1 and BHRF1. They protect the virus from apoptosis in its host cell during virus synthesis [, ]. The virus infects B lymphocytes to establish a latent infection and yield proliferating, growth-transformed B cells in vitro. Bcl-2 genes are essential for the initial evasion of apoptosis which allows it to establish a latent infection or cause cellular transformation, or both []. Bcl-2 family proteins can inhibit or induce programmed cell death in part by counteracting the activity of other BCL-2 family members. BALF1, inhibits the antiapoptotic activity of EBV BHRF1 and of KSBcl-2 in several transfected cell lines. BALF1 fails, however, to inhibit the cellular BCL-2 family member, BCL-x(L). Thus, BALF1 acts as a negative regulator of the survival function of BHRF1, similar to the counterbalance observed between cellular BCL-2 family members [].
Probab=28.40 E-value=58 Score=28.24 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCHHH
Q 022024 272 CKNDEEIVAVIAHELGHWKLNHTMY 296 (304)
Q Consensus 272 l~~~~El~aVlaHElgH~k~~H~~~ 296 (304)
+++++|=.++++|++||+...|-..
T Consensus 126 l~~d~e~~s~v~~~lA~Fy~~~r~~ 150 (182)
T PF06861_consen 126 LLNDHENASLVSHALAHFYLRYRRA 150 (182)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHH
Confidence 3488999999999999999888653
No 147
>PF14521 Aspzincin_M35: Lysine-specific metallo-endopeptidase ; PDB: 2X3C_A 2X3A_A 2X3B_A 1GE7_B 1GE6_A 1GE5_A 1G12_A.
Probab=28.13 E-value=92 Score=25.98 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=24.9
Q ss_pred ccEEEEccCCCCEEEEcHhHHhhC-CCHHHHHHHHHHHHHHh
Q 022024 249 SNAYMYGFFKNKRIVLYDTLIQQC-KNDEEIVAVIAHELGHW 289 (304)
Q Consensus 249 ~NA~~~G~~~~k~Ivl~d~Ll~~l-~~~~El~aVlaHElgH~ 289 (304)
.-|++..-.+...|.|-....+.- ...+.-+..|.||+.|+
T Consensus 66 ~~a~~~~~~~~~~IyLc~~F~~~p~~g~~Sk~~TLiHE~SHf 107 (148)
T PF14521_consen 66 TYAYVYPDSPTYTIYLCPAFFSAPTTGKDSKEGTLIHEWSHF 107 (148)
T ss_dssp SSEEE-TTST-TEEEE-HHHHHS-SSSTT-HHHHHHHHHHHS
T ss_pred eEEEEECCCCceEEEEChhhcCCCCCCCCchHHHHHHhhhhh
Confidence 344444322335799999888742 14567899999999993
No 148
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=28.00 E-value=2.1e+02 Score=26.54 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=23.0
Q ss_pred HHhhCCCHHHHHHHHHHHHHHhhcCCHHH
Q 022024 268 LIQQCKNDEEIVAVIAHELGHWKLNHTMY 296 (304)
Q Consensus 268 Ll~~l~~~~El~aVlaHElgH~k~~H~~~ 296 (304)
++|.. +++|++.++-+|+.....+|..-
T Consensus 120 vvDG~-~~~~i~~iLe~ei~~~~~r~~~~ 147 (271)
T PRK06926 120 AIDGW-EPETIRDIMMAEIAAMEERHRKG 147 (271)
T ss_pred HHCCC-CHHHHHHHHHHHHHHHHHHHHhH
Confidence 34556 99999999999999988888653
No 149
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=27.58 E-value=96 Score=20.64 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=21.3
Q ss_pred HHhhcCCCCCCCchHHHHHHHHHHHHcCCCC
Q 022024 204 IAPLFNKFTPLPEGELREKIEKLASSLKFPL 234 (304)
Q Consensus 204 i~plf~~~~pl~~~~L~~~i~~l~~~~g~~~ 234 (304)
+...+|.-..+ .++.+++|.+.++++|+.+
T Consensus 16 VSr~ln~~~~v-s~~tr~rI~~~a~~lgY~p 45 (46)
T PF00356_consen 16 VSRVLNGPPRV-SEETRERILEAAEELGYRP 45 (46)
T ss_dssp HHHHHTTCSSS-THHHHHHHHHHHHHHTB-S
T ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHHHCCCC
Confidence 33445544444 5899999999999999864
No 150
>smart00361 RRM_1 RNA recognition motif.
Probab=27.40 E-value=1.4e+02 Score=21.05 Aligned_cols=26 Identities=8% Similarity=0.227 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHcCCCCCcEE--EEeC
Q 022024 216 EGELREKIEKLASSLKFPLKKLF--VVDG 242 (304)
Q Consensus 216 ~~~L~~~i~~l~~~~g~~~~~i~--v~~~ 242 (304)
+.++++.+.+.|.+.| +..++. ++|.
T Consensus 2 ~~~l~~~~~~~~~~fG-~v~~v~~v~~~~ 29 (70)
T smart00361 2 DEDFEREFSEEEEYFG-EVGKINKIYIDN 29 (70)
T ss_pred chhHHHHHHHHHHhcC-CeeEEEEEEeCC
Confidence 5788999999999998 456664 5554
No 151
>PRK00647 hypothetical protein; Validated
Probab=27.30 E-value=1.6e+02 Score=23.01 Aligned_cols=50 Identities=20% Similarity=0.255 Sum_probs=34.9
Q ss_pred CCCCCchHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEccCCCCEEEEcHhHHhhC
Q 022024 211 FTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQC 272 (304)
Q Consensus 211 ~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l 272 (304)
..|.+...=++.++-+++.+|+|..+|-++.+.+ .+.|.|.+.+++-..+
T Consensus 35 ApPvdGKAN~ali~~LAk~l~vpks~I~Iv~G~t------------Sr~K~v~i~~~~~~~l 84 (96)
T PRK00647 35 EVPEKGKANDAVIALLAKFLSLPKRDVTLIAGET------------SRKKKVLLPRSIKAIL 84 (96)
T ss_pred cCCCCChHHHHHHHHHHHHhCCChhhEEEEecCC------------CCceEEEEChhHHHHH
Confidence 3455433445666778889999999999987642 2678888877766554
No 152
>COG3305 Predicted membrane protein [Function unknown]
Probab=27.12 E-value=3.7e+02 Score=22.36 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHhchhchhhhhhce
Q 022024 106 LHTLSFLAGVMLWSQLTDLPFSLYSTFV 133 (304)
Q Consensus 106 ~~~~~f~~~~~l~~~l~~lPf~~Y~~f~ 133 (304)
++.....-.+.+++..+.+||+.|.-+.
T Consensus 90 W~~k~W~e~fa~vs~aIyLPfeVy~l~~ 117 (152)
T COG3305 90 WLLKRWGEYFAVVSTAIYLPFEVYDLAK 117 (152)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHc
Confidence 4444445567778999999999998774
No 153
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=27.01 E-value=1.8e+02 Score=22.47 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCCCCcEEE--EeC-CCCCCcccEEEEc------c--CCCCEEEEcHhHH
Q 022024 218 ELREKIEKLASSLKFPLKKLFV--VDG-STRSSHSNAYMYG------F--FKNKRIVLYDTLI 269 (304)
Q Consensus 218 ~L~~~i~~l~~~~g~~~~~i~v--~~~-s~rs~~~NA~~~G------~--~~~k~Ivl~d~Ll 269 (304)
-++..+++.+++.|++. ++-+ ++. +...+..-.++++ + .+.+++++...++
T Consensus 17 ~ik~kve~~l~~~gi~~-~~~~~~v~~~~~~~~~aDiiv~s~~l~~~~~~~~~~~v~~~~~~~ 78 (93)
T COG3414 17 MIKMKVEEVLKELGIDV-DVEQCAVDEIKALTDGADIIVTSTKLADEFEDIPKGYVVITGNGM 78 (93)
T ss_pred HHHHHHHHHHHHcCCCc-eeeeEEecccccCCCcccEEEEehHhhhhcCcCCCceEEEEcccC
Confidence 46889999999999973 2222 221 2222333344432 2 1235788888776
No 154
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site.; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....
Probab=26.71 E-value=39 Score=29.45 Aligned_cols=12 Identities=58% Similarity=0.756 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhh
Q 022024 279 VAVIAHELGHWK 290 (304)
Q Consensus 279 ~aVlaHElgH~k 290 (304)
.+++.||+||.-
T Consensus 80 ~~~i~HEl~HaL 91 (191)
T PF01400_consen 80 VGTILHELGHAL 91 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccchHHHHHHHH
Confidence 469999999974
No 155
>COG4149 ModC ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]
Probab=26.52 E-value=3e+02 Score=24.91 Aligned_cols=118 Identities=20% Similarity=0.333 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHHHhchhchhhhhhceeecccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH----
Q 022024 106 LHTLSFLAGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYL---- 181 (304)
Q Consensus 106 ~~~~~f~~~~~l~~~l~~lPf~~Y~~f~le~~~g~~~~t~~~~~~d~~k~~~l~~vl~~~l~~~~~~l~~~~~~~~---- 181 (304)
++.+.--+-.+.+++++.+|....-.|.+.++.+.-| ..+.+.+.-=++..|.+.+.+.++- +|++-
T Consensus 6 ~~~l~LSlkvA~ist~~~l~lgi~~a~~Lar~~~~~k--------~ll~~lv~LPLVLPPtV~G~~LLi~-fgr~g~iG~ 76 (225)
T COG4149 6 LTALLLSLKVALISTLLLLPLGIALAYLLARRRFRGK--------SLLESLVLLPLVLPPVVLGFLLLVL-FGRNGFIGQ 76 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCcc--------hHHHHHHHccccCCchHHHHHHHHH-HcCcCchHH
Confidence 3444444556667777777777777777766655442 2223332222333344444443332 22222
Q ss_pred HHHHHH-HHH------HHHHHHHhHhHHHHHhhcCCCCCCCchHHHHHHHHHHHHcCCCCCcE
Q 022024 182 AIYLWA-FMF------VLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKL 237 (304)
Q Consensus 182 ~l~~~~-~~~------~~~~~~~~~~p~~i~plf~~~~pl~~~~L~~~i~~l~~~~g~~~~~i 237 (304)
+++-|. ..+ ++..-.....|.+..|+-..++-++ +++++.++..|-...++
T Consensus 77 ~l~~~~g~~~~Fs~~gavlAs~vvslPlmv~~~~~a~~~id-----~~le~aA~tlGas~~~v 134 (225)
T COG4149 77 FLEDWFGLSLAFSWQGAVLASVVVSLPLMVRPLRLAFEAID-----RELEEAARTLGASRWEV 134 (225)
T ss_pred HHHHHcCCcEEEeeHHHHHHHHHHHHHHHHHHHHHHHHhcC-----hhHHHHHHHcCCChhhh
Confidence 222211 111 1112223445777777655555442 34555566777655444
No 156
>PRK00523 hypothetical protein; Provisional
Probab=26.32 E-value=2.2e+02 Score=21.12 Aligned_cols=28 Identities=7% Similarity=0.117 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 022024 10 VGFMILMYFFETYLDLRQHAALKLPKLP 37 (304)
Q Consensus 10 ~~~~~~~~l~~~~L~~rq~~~~~~~~~P 37 (304)
+..++...+...|+..|+.+++-++++|
T Consensus 12 i~~li~G~~~Gffiark~~~k~l~~NPp 39 (72)
T PRK00523 12 IPLLIVGGIIGYFVSKKMFKKQIRENPP 39 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 4445566677788999999988776666
No 157
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=26.31 E-value=6e+02 Score=24.58 Aligned_cols=36 Identities=17% Similarity=0.359 Sum_probs=22.7
Q ss_pred chHHHHHHHHHHHHc-------CCCCCcEEEEeCCCCCCcccEEEE
Q 022024 216 EGELREKIEKLASSL-------KFPLKKLFVVDGSTRSSHSNAYMY 254 (304)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~~~s~rs~~~NA~~~ 254 (304)
||+.+.+++++.++. +.|..++.+.|- +..+-|.-+
T Consensus 239 dP~iK~r~Rq~~re~~~~~m~~~V~~AdVVItNP---TH~AVAL~Y 281 (358)
T PRK13109 239 DPSVKARLRSLAQDRARNRMLANVPRATLVIANP---THFAIALRY 281 (358)
T ss_pred CHHHHHHHHHHHHHHHHhhHhhcCCCCcEEEECC---CceEEEeEe
Confidence 588888887777653 555568888763 234444444
No 158
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=25.83 E-value=2.4e+02 Score=27.73 Aligned_cols=49 Identities=20% Similarity=0.133 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHhchhchhhhhhceeecccCCCCCCH----------HHHHHHHHH
Q 022024 106 LHTLSFLAGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTI----------WLFFRDMIK 154 (304)
Q Consensus 106 ~~~~~f~~~~~l~~~l~~lPf~~Y~~f~le~~~g~~~~t~----------~~~~~d~~k 154 (304)
.-.=.|+..+++++.++-.|.-+.-++-.||+|.+.+++. +.++.|++.
T Consensus 277 vdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW 335 (416)
T KOG2765|consen 277 VDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLW 335 (416)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHH
Confidence 3344678888899999999888888888999999977765 556666643
No 159
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=25.74 E-value=40 Score=36.62 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhhcCCH
Q 022024 275 DEEIVAVIAHELGHWKLNHT 294 (304)
Q Consensus 275 ~~El~aVlaHElgH~k~~H~ 294 (304)
.+.+.-|+|||++|.=-|..
T Consensus 321 k~~va~vIaHElAHQWFGNL 340 (882)
T KOG1046|consen 321 KQRVAEVIAHELAHQWFGNL 340 (882)
T ss_pred HHHHHHHHHHHHHHHHhcCc
Confidence 56699999999999766643
No 160
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=25.60 E-value=33 Score=29.96 Aligned_cols=12 Identities=42% Similarity=0.423 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhh
Q 022024 279 VAVIAHELGHWK 290 (304)
Q Consensus 279 ~aVlaHElgH~k 290 (304)
.+++.||+||.-
T Consensus 78 ~G~i~HEl~HaL 89 (182)
T cd04283 78 KGIIQHELLHAL 89 (182)
T ss_pred cchHHHHHHHHh
Confidence 589999999974
No 161
>KOG3624 consensus M13 family peptidase [Amino acid transport and metabolism]
Probab=25.42 E-value=38 Score=35.50 Aligned_cols=41 Identities=34% Similarity=0.322 Sum_probs=27.7
Q ss_pred CcccEEEEccCCCCEEEEcHhHHhh----------CCCHHHHHHHHHHHHHHhh
Q 022024 247 SHSNAYMYGFFKNKRIVLYDTLIQQ----------CKNDEEIVAVIAHELGHWK 290 (304)
Q Consensus 247 ~~~NA~~~G~~~~k~Ivl~d~Ll~~----------l~~~~El~aVlaHElgH~k 290 (304)
...||+-. +.+..|++.-++++- + .=.-+-+|||||++|--
T Consensus 480 ~~~na~Y~--~~~N~i~~pa~ilq~P~f~~~~P~~~-nyg~iG~vigHEl~H~F 530 (687)
T KOG3624|consen 480 AQVNAFYS--PEKNEIVFPAGLLQPPFFDLSYPDYL-NYGGIGFVIGHELTHGF 530 (687)
T ss_pred ceeecccc--CCCceEEEehhcccCCCCCcccchhh-hhHHHHHHHHHHHhhcc
Confidence 34555443 356778888887764 3 33457899999999953
No 162
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.36 E-value=2.6e+02 Score=20.66 Aligned_cols=27 Identities=7% Similarity=-0.055 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 022024 11 GFMILMYFFETYLDLRQHAALKLPKLP 37 (304)
Q Consensus 11 ~~~~~~~l~~~~L~~rq~~~~~~~~~P 37 (304)
..+++..+...|+..||.+++-++++|
T Consensus 12 l~ll~G~~~G~fiark~~~k~lk~NPp 38 (71)
T COG3763 12 LALLAGLIGGFFIARKQMKKQLKDNPP 38 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 344455567789999999988777666
No 163
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=25.20 E-value=53 Score=31.93 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHHhhc
Q 022024 274 NDEEIVAVIAHELGHWKL 291 (304)
Q Consensus 274 ~~~El~aVlaHElgH~k~ 291 (304)
.++.+.+.+|||+-|..|
T Consensus 135 ~~~~~~sTlAHEfQHmIn 152 (366)
T PF10460_consen 135 GPDTVYSTLAHEFQHMIN 152 (366)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 468899999999999864
No 164
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=25.14 E-value=71 Score=19.78 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=16.5
Q ss_pred chHHHHHHHHHHHHcCCCC
Q 022024 216 EGELREKIEKLASSLKFPL 234 (304)
Q Consensus 216 ~~~L~~~i~~l~~~~g~~~ 234 (304)
++++.+.++++|++.|.+.
T Consensus 7 ~~~~~~~l~~~a~~~g~s~ 25 (39)
T PF01402_consen 7 PDELYERLDELAKELGRSR 25 (39)
T ss_dssp EHHHHHHHHHHHHHHTSSH
T ss_pred CHHHHHHHHHHHHHHCcCH
Confidence 5789999999999999764
No 165
>PRK01844 hypothetical protein; Provisional
Probab=24.88 E-value=2.3e+02 Score=20.96 Aligned_cols=29 Identities=7% Similarity=-0.030 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 022024 9 VVGFMILMYFFETYLDLRQHAALKLPKLP 37 (304)
Q Consensus 9 ~~~~~~~~~l~~~~L~~rq~~~~~~~~~P 37 (304)
.++.++...+...|+..++.+++-++++|
T Consensus 10 ~I~~li~G~~~Gff~ark~~~k~lk~NPp 38 (72)
T PRK01844 10 GVVALVAGVALGFFIARKYMMNYLQKNPP 38 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 34455666677889999999988777665
No 166
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.
Probab=24.79 E-value=34 Score=30.30 Aligned_cols=12 Identities=42% Similarity=0.789 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhh
Q 022024 279 VAVIAHELGHWK 290 (304)
Q Consensus 279 ~aVlaHElgH~k 290 (304)
.+++.|||+|.-
T Consensus 88 ~Gti~HEl~HaL 99 (200)
T cd04281 88 FGIVVHELGHVI 99 (200)
T ss_pred CchHHHHHHHHh
Confidence 579999999974
No 167
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=24.50 E-value=5.3e+02 Score=23.34 Aligned_cols=57 Identities=11% Similarity=0.156 Sum_probs=34.7
Q ss_pred chHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEccCCCCEEEEcHhHHhhCCCHHHHHHHHHHH
Q 022024 216 EGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHE 285 (304)
Q Consensus 216 ~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~El~aVlaHE 285 (304)
.+.-...++++-+ |...++-.-+| .+.++..=+.|+..-|.+.++ ++.-+.-.++-|
T Consensus 87 pGAa~avL~~lr~--~W~~~~pVa~n-----r~qD~V~R~vGrpGVvLVgEG------~~~Rv~~Ll~~E 143 (224)
T PF13829_consen 87 PGAAGAVLDNLRR--GWRVTEPVAVN-----RTQDAVHRVVGRPGVVLVGEG------PPSRVKKLLAQE 143 (224)
T ss_pred CchHHHHHHhhcC--CcccCCceeec-----CccceEEEecCCCcEEEEecC------CHHHHHHHHHHH
Confidence 4566666666544 66655533333 256688888888788888876 444444444444
No 168
>COG0555 CysU ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=24.29 E-value=5.9e+02 Score=23.78 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHcCCCCCcEE
Q 022024 217 GELREKIEKLASSLKFPLKKLF 238 (304)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~~~i~ 238 (304)
+|+.++.|+.++.+|-+.-+.+
T Consensus 163 ~~id~~~EeaA~sLGas~~~tf 184 (274)
T COG0555 163 EEIDREYEEAARSLGASPLQTF 184 (274)
T ss_pred HhccHHHHHHHHhcCCCcceee
Confidence 5667788889999998765443
No 169
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=23.79 E-value=47 Score=27.02 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHHhhcCCHHHHHHH
Q 022024 274 NDEEIVAVIAHELGHWKLNHTMYSFIA 300 (304)
Q Consensus 274 ~~~El~aVlaHElgH~k~~H~~~~~~~ 300 (304)
++....||.+|.+|++.+.|..-+-++
T Consensus 56 ~d~~~laVac~Dig~~vr~~p~gr~ii 82 (119)
T PF11698_consen 56 DDPTTLAVACHDIGEFVRHYPNGRNII 82 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH-GGGHHHH
T ss_pred CCcceeehhhcchHHHHHHChhHHHHH
Confidence 577899999999999999887644443
No 170
>PRK10911 oligopeptidase A; Provisional
Probab=23.69 E-value=48 Score=34.93 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHHhhcCCH
Q 022024 274 NDEEIVAVIAHELGHWKLNHT 294 (304)
Q Consensus 274 ~~~El~aVlaHElgH~k~~H~ 294 (304)
+.+|+. .+.||+||.-|+..
T Consensus 460 ~~~~v~-tlfHEfGHalH~~l 479 (680)
T PRK10911 460 THDEVI-TLFHEFGHGLHHML 479 (680)
T ss_pred CHHHHH-HHHHHHhHHHHHHH
Confidence 558886 68899999987543
No 171
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=23.45 E-value=6.8e+02 Score=24.21 Aligned_cols=26 Identities=15% Similarity=0.464 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHHHc-------CCCCCcEEEEe
Q 022024 216 EGELREKIEKLASSL-------KFPLKKLFVVD 241 (304)
Q Consensus 216 ~~~L~~~i~~l~~~~-------g~~~~~i~v~~ 241 (304)
||+++.+++++.++. +.|..++.+.|
T Consensus 237 dP~iK~rrR~~~re~a~~~m~~~V~~AdVVItN 269 (359)
T PRK05702 237 DPEVKGRIRQLQREMARRRMMAAVPKADVVITN 269 (359)
T ss_pred CHHHHHHHHHHHHHHHHhHHhhcCCCCcEEEEC
Confidence 588887777766542 45556787776
No 172
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=23.29 E-value=2.4e+02 Score=22.25 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=18.1
Q ss_pred CCCChhhcccCCHHHHHHHHH
Q 022024 34 PKLPKTLEGVISQEKFEKSRG 54 (304)
Q Consensus 34 ~~~P~~l~~~~~~e~~~k~~~ 54 (304)
+..|.+|.+++++++|++.-+
T Consensus 20 ~~~P~~L~~~is~~ef~~iI~ 40 (118)
T PF10256_consen 20 TEYPGELSGYISPEEFEEIIN 40 (118)
T ss_pred ccCCHhhcCCCCHHHHHHHHH
Confidence 468999999999999998644
No 173
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=22.52 E-value=3.2e+02 Score=22.82 Aligned_cols=70 Identities=11% Similarity=0.209 Sum_probs=43.9
Q ss_pred CchHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEccCCC--CEEEEc-----HhHHhhCCCHHHHHHHHHHHHH
Q 022024 215 PEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKN--KRIVLY-----DTLIQQCKNDEEIVAVIAHELG 287 (304)
Q Consensus 215 ~~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~--k~Ivl~-----d~Ll~~l~~~~El~aVlaHElg 287 (304)
+|+++...+.+.|++.+ + +.+.|++ ...|.++-..-+. =.|-++ -.+-..+ .++++..+-+++|
T Consensus 79 ~d~e~N~~i~~~a~~~~-~---vn~~d~~---~~~~f~~pa~v~~~~l~iaisT~G~sP~la~~l--r~~ie~~l~~~~~ 149 (157)
T PRK06719 79 NQHAVNMMVKQAAHDFQ-W---VNVVSDG---TESSFHTPGVIRNDEYVVTISTSGKDPSFTKRL--KQELTSILPKLIK 149 (157)
T ss_pred CCHHHHHHHHHHHHHCC-c---EEECCCC---CcCcEEeeeEEEECCeEEEEECCCcChHHHHHH--HHHHHHHhhHHHH
Confidence 57889999998888743 2 3344443 2345554433222 233332 2344444 8999999999999
Q ss_pred HhhcCC
Q 022024 288 HWKLNH 293 (304)
Q Consensus 288 H~k~~H 293 (304)
++.+.|
T Consensus 150 ~~a~~~ 155 (157)
T PRK06719 150 KISRTH 155 (157)
T ss_pred HHHhhc
Confidence 998877
No 174
>PF10462 Peptidase_M66: Peptidase M66; InterPro: IPR019503 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of metallopeptidases belonging to MEROPS peptidase family M66 (StcE peptidase, clan MA). The StcE peptidase is a virulence factor found in Shiga toxigenic Escherichia coli strains. StcE peptidase cleaves C1 esterase inhibitor []. The SwissProt proteins in this entry have been name "Dictomallein". ; GO: 0004222 metalloendopeptidase activity; PDB: 3UJZ_A.
Probab=22.32 E-value=45 Score=31.57 Aligned_cols=13 Identities=38% Similarity=0.391 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhh
Q 022024 278 IVAVIAHELGHWK 290 (304)
Q Consensus 278 l~aVlaHElgH~k 290 (304)
...+++||+||--
T Consensus 193 ~~~~f~HE~GH~~ 205 (305)
T PF10462_consen 193 YGNEFSHELGHNF 205 (305)
T ss_dssp SHHHHHHHHHHTT
T ss_pred ccceeehhhhhhc
Confidence 5778999999953
No 175
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=22.20 E-value=1.5e+02 Score=20.28 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHcCCCCC--cEEEEeCCCCCCcccEEEEccCCCCEE
Q 022024 217 GELREKIEKLASSLKFPLK--KLFVVDGSTRSSHSNAYMYGFFKNKRI 262 (304)
Q Consensus 217 ~~L~~~i~~l~~~~g~~~~--~i~v~~~s~rs~~~NA~~~G~~~~k~I 262 (304)
..+.+.++.-++++|.+.. ++-|++. ++--+.|+|+.+-+
T Consensus 5 kt~eeAi~~A~~~l~~~~~~~~~eVi~~------g~kGf~G~g~k~a~ 46 (52)
T PF14804_consen 5 KTVEEAIEKALKELGVPREELEYEVIEE------GKKGFFGFGKKPAK 46 (52)
T ss_dssp SSHHHHHHHHHHHTT--GGGEEEEEEE--------B--------B-EE
T ss_pred CCHHHHHHHHHHHhCCChHHEEEEEEEc------CCCcEEeecceeEE
Confidence 3477889999999999976 4556764 23346777654433
No 176
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=22.13 E-value=1.8e+02 Score=20.05 Aligned_cols=38 Identities=26% Similarity=0.360 Sum_probs=27.5
Q ss_pred CCCCCCchHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEccCCCCEEEEc
Q 022024 210 KFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLY 265 (304)
Q Consensus 210 ~~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~ 265 (304)
.+.|+ +++-|..|.++|+..|+... ..|-|+.++++++
T Consensus 20 ~fppm-~~~~R~~vH~lA~~~~L~S~-----------------S~G~g~~R~v~v~ 57 (58)
T cd02646 20 SFPPM-DKHGRKTIHKLANCYNLKSK-----------------SRGKGKKRFVTVT 57 (58)
T ss_pred ecCCC-CHHHHHHHHHHHHHcCCccc-----------------ccccCCceEEEEE
Confidence 46677 57789999999999998632 1344567777765
No 177
>PF05548 Peptidase_M11: Gametolysin peptidase M11; InterPro: IPR008752 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M11 (gametolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The type example is gametolysin from the unicellular biflagellated alga, Chlamydomonas reinhardtii Gametolysin is a zinc-containing metallo-protease, which is responsible for the degradation of the cell wall. Homologues of gametolysin have also been reported in the simple multicellular organism, Volvox [, ].
Probab=21.92 E-value=44 Score=31.70 Aligned_cols=24 Identities=8% Similarity=0.183 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHc-CCCC-----CcEEEEeC
Q 022024 219 LREKIEKLASSL-KFPL-----KKLFVVDG 242 (304)
Q Consensus 219 L~~~i~~l~~~~-g~~~-----~~i~v~~~ 242 (304)
+.+..++.++.. |... ..+|+++.
T Consensus 93 ~~~~Ad~~a~~~lG~~~~s~y~h~vyvlP~ 122 (314)
T PF05548_consen 93 WADAADAAARAQLGVNAFSSYTHRVYVLPP 122 (314)
T ss_pred HHHHHHHHHHhhcCcccccccceEEEEcCC
Confidence 556666666665 6531 36888875
No 178
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=21.72 E-value=3.8e+02 Score=25.44 Aligned_cols=45 Identities=16% Similarity=0.331 Sum_probs=29.4
Q ss_pred HHHHhHhHHHHHhhcCCCCCCCchHHHHHHHHHHHHcCCCCCcEEE
Q 022024 194 LVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFV 239 (304)
Q Consensus 194 ~~~~~~~p~~i~plf~~~~pl~~~~L~~~i~~l~~~~g~~~~~i~v 239 (304)
+.+.+..|.-+ -+|-+...++-.+|+.++++..++.|-+.+.+|-
T Consensus 260 ~~l~~~~P~a~-AlFPQ~~si~~~~LEpe~~~~~~~~g~~~~~vyy 304 (308)
T PF03820_consen 260 LCLGFMLPLAC-ALFPQRSSISVSKLEPELQELTEKKGPPPTTVYY 304 (308)
T ss_pred HHHHHhhhhHH-hhcccccccchHhcCHHHHHHHhhcCCCCCEEEe
Confidence 33444455433 4566677777677777777777777777767764
No 179
>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.
Probab=21.69 E-value=41 Score=28.99 Aligned_cols=12 Identities=42% Similarity=0.468 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhh
Q 022024 279 VAVIAHELGHWK 290 (304)
Q Consensus 279 ~aVlaHElgH~k 290 (304)
.+++.||+||.-
T Consensus 75 ~g~v~HE~~Hal 86 (180)
T cd04280 75 LGTIVHELMHAL 86 (180)
T ss_pred CchhHHHHHHHh
Confidence 689999999974
No 180
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.56 E-value=98 Score=22.80 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=12.0
Q ss_pred cCCCCCCCchHHHHHHHHHHHHcCCCCC
Q 022024 208 FNKFTPLPEGELREKIEKLASSLKFPLK 235 (304)
Q Consensus 208 f~~~~pl~~~~L~~~i~~l~~~~g~~~~ 235 (304)
+.+=-|+.++.+| .+..+.|-++.
T Consensus 33 lk~NPpine~~iR----~M~~qmGqKpS 56 (71)
T COG3763 33 LKDNPPINEEMIR----MMMAQMGQKPS 56 (71)
T ss_pred HhhCCCCCHHHHH----HHHHHhCCCch
Confidence 3334456544444 44556666553
No 181
>KOG3714 consensus Meprin A metalloprotease [Posttranslational modification, protein turnover, chaperones]
Probab=21.08 E-value=42 Score=33.03 Aligned_cols=12 Identities=42% Similarity=0.421 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhh
Q 022024 279 VAVIAHELGHWK 290 (304)
Q Consensus 279 ~aVlaHElgH~k 290 (304)
.++++|||+|.-
T Consensus 160 ~G~i~HEl~HaL 171 (411)
T KOG3714|consen 160 FGTIVHELMHAL 171 (411)
T ss_pred CchhHHHHHHHh
Confidence 789999999974
No 182
>PRK09109 motC flagellar motor protein; Reviewed
Probab=21.03 E-value=4.5e+02 Score=23.89 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=21.4
Q ss_pred hhCCCHHHHHHHHHHHHHHhhcCCHHHH
Q 022024 270 QQCKNDEEIVAVIAHELGHWKLNHTMYS 297 (304)
Q Consensus 270 ~~l~~~~El~aVlaHElgH~k~~H~~~~ 297 (304)
+.. ++|+++.++-.|+....++|-...
T Consensus 117 ~g~-~~~~i~~~le~~i~~~~~r~~~~~ 143 (246)
T PRK09109 117 DGA-EPESIRSVLEVEIDTQEHRDLQAA 143 (246)
T ss_pred cCC-CHHHHHHHHHHHHHHHHHHHHhHh
Confidence 445 899999999999998888865433
No 183
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=20.90 E-value=1e+02 Score=20.30 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=18.2
Q ss_pred chHHHHHHHHHHHHcCCCCCc
Q 022024 216 EGELREKIEKLASSLKFPLKK 236 (304)
Q Consensus 216 ~~~L~~~i~~l~~~~g~~~~~ 236 (304)
++++.+++++++++.|+|..+
T Consensus 10 ~~el~~~L~~ls~~t~i~~S~ 30 (44)
T PF12651_consen 10 DKELYEKLKELSEETGIPKSK 30 (44)
T ss_pred CHHHHHHHHHHHHHHCCCHHH
Confidence 589999999999999998543
No 184
>PF13994 PgaD: PgaD-like protein
Probab=20.65 E-value=4.8e+02 Score=21.36 Aligned_cols=23 Identities=13% Similarity=-0.035 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 022024 155 GMILAIVLGPPIVSAIIIIVQKG 177 (304)
Q Consensus 155 ~~~l~~vl~~~l~~~~~~l~~~~ 177 (304)
.++.-+-+..|++.++.++....
T Consensus 24 ~W~~~~yL~~pl~~ll~~ll~~~ 46 (138)
T PF13994_consen 24 FWGGFIYLWRPLLTLLAWLLGLH 46 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc
Confidence 34444555666666777755443
No 185
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=20.64 E-value=1.1e+02 Score=28.93 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=42.6
Q ss_pred HHHHHhHhHHHHHhhcC--CCCCCCchHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCcccEEEEccCCCC
Q 022024 193 SLVMMTLYPVLIAPLFN--KFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNK 260 (304)
Q Consensus 193 ~~~~~~~~p~~i~plf~--~~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~s~rs~~~NA~~~G~~~~k 260 (304)
.++.-++.+.+...-+. ++-++++| .+.+.++|++.|+..+.-.++..+.|.+..-+|+.|+-.++
T Consensus 208 ~~v~dFI~~qi~~k~L~~~~m~ql~~P--~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~k 275 (333)
T KOG3769|consen 208 NFVRDFINDQILSKDLDPREMWQLQWP--RRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGK 275 (333)
T ss_pred HHHHHHHHHHhhhhccchHhhccccch--HHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCc
Confidence 34444455544433222 45555555 57788899999998776666766767778889999974333
No 186
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=20.54 E-value=1e+02 Score=24.54 Aligned_cols=25 Identities=8% Similarity=0.289 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 022024 8 AVVGFMILMYFFETYLDLRQHAALK 32 (304)
Q Consensus 8 ~~~~~~~~~~l~~~~L~~rq~~~~~ 32 (304)
.++++..+.+++..++.+.|+|++.
T Consensus 3 ~lii~~~~~~~lQ~~l~~~Qik~f~ 27 (109)
T PF06923_consen 3 ILIILLVIAWLLQILLGWFQIKNFN 27 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888999999999999875
No 187
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=20.52 E-value=61 Score=24.38 Aligned_cols=30 Identities=13% Similarity=0.258 Sum_probs=22.9
Q ss_pred CHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 022024 45 SQEKFEKSRGYSLDKSHFHFVHEFVTILMD 74 (304)
Q Consensus 45 ~~e~~~k~~~Y~~~k~~~~~~~~~~~~~~~ 74 (304)
...+++.|+++++.-.+++++...++.+..
T Consensus 49 ~~Gd~~~A~~aS~~Ak~~~~ia~~~g~~~~ 78 (82)
T PF04505_consen 49 AAGDYEGARRASRKAKKWSIIAIIIGIVII 78 (82)
T ss_pred HCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345688999999998898888777665544
No 188
>PF13402 M60-like: Peptidase M60-like family; PDB: 4FCA_A.
Probab=20.38 E-value=49 Score=30.58 Aligned_cols=40 Identities=20% Similarity=0.126 Sum_probs=19.6
Q ss_pred ccEEEEccCCCCEEEEcHhHH-hhCCCHHHH---HHHHHHHHHHhhcCC
Q 022024 249 SNAYMYGFFKNKRIVLYDTLI-QQCKNDEEI---VAVIAHELGHWKLNH 293 (304)
Q Consensus 249 ~NA~~~G~~~~k~Ivl~d~Ll-~~l~~~~El---~aVlaHElgH~k~~H 293 (304)
..+++.|. .|....+.. ..+ +.+.+ .=-..||+||....-
T Consensus 191 g~m~a~g~----~i~~~~~~~~~~l-~~~~~~~~~WG~~HE~GH~~Q~~ 234 (307)
T PF13402_consen 191 GYMHASGY----PIGFPPNWMNELL-NPNPLRKGGWGPWHELGHNHQQG 234 (307)
T ss_dssp -SEEEETT----EEEEETT--HHHH--HHHHHHH-HHHHHHHHHHH-BG
T ss_pred cceeecCC----cEEeeCcHHhccc-CHhHcCCCCeeehhhhhhhcCcc
Confidence 45555553 333333332 234 55555 346899999986543
No 189
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=20.35 E-value=2.6e+02 Score=20.20 Aligned_cols=28 Identities=7% Similarity=0.025 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 022024 10 VGFMILMYFFETYLDLRQHAALKLPKLP 37 (304)
Q Consensus 10 ~~~~~~~~l~~~~L~~rq~~~~~~~~~P 37 (304)
++.++...+...|+.-|+.+++-++++|
T Consensus 4 ilali~G~~~Gff~ar~~~~k~l~~NPp 31 (64)
T PF03672_consen 4 ILALIVGAVIGFFIARKYMEKQLKENPP 31 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3444455577788888998887666666
No 190
>PF01098 FTSW_RODA_SPOVE: Cell cycle protein; InterPro: IPR001182 A number of prokaryotic integral membrane proteins involved in cell cycle processes have been found to be structurally related [, ]. These proteins include, the Escherichia coli and related bacteria cell division protein ftsW and the rod shape-determining protein rodA (or mrdB), the Bacillus subtilis stage V sporulation protein E (spoVE), the B. subtilis hypothetical proteins ywcF and ylaO and the Cyanophora paradoxa cyanelle ftsW homolog.; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=20.34 E-value=65 Score=30.77 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=15.7
Q ss_pred HhhCCCHHHHHHHHHHHHHHh
Q 022024 269 IQQCKNDEEIVAVIAHELGHW 289 (304)
Q Consensus 269 l~~l~~~~El~aVlaHElgH~ 289 (304)
+-.. ..|-+-|++++|.|=.
T Consensus 249 lP~~-~tDfi~a~i~ee~G~i 268 (358)
T PF01098_consen 249 LPEA-HTDFIFAVIGEEFGWI 268 (358)
T ss_pred CCCc-chhhHHHHHHHHHhHH
Confidence 3345 7899999999999854
No 191
>COG3641 PfoR Predicted membrane protein, putative toxin regulator [General function prediction only]
Probab=20.32 E-value=7.5e+02 Score=23.75 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH
Q 022024 140 FNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYL 181 (304)
Q Consensus 140 ~~~~t~~~~~~d~~k~~~l~~vl~~~l~~~~~~l~~~~~~~~ 181 (304)
.++.|++.|+++.+.+...+.+++..--.++-.+.+..++..
T Consensus 3 ~~~~~~k~fm~~~l~~~~~giv~gLvp~ailG~ilk~i~~~~ 44 (348)
T COG3641 3 TKKKTPKQFMKKILNGALAGIVIGLVPNAILGLILKTIGDNT 44 (348)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccH
Confidence 367899999999999988888888777777777788887754
No 192
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=20.26 E-value=1.7e+02 Score=24.77 Aligned_cols=55 Identities=11% Similarity=0.178 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCCCC-----cEEEEeCCCCCCcccEEEEccC-CCCEEEEcHhHHhhCCCHHHHHHHHH
Q 022024 220 REKIEKLASSLKFPLK-----KLFVVDGSTRSSHSNAYMYGFF-KNKRIVLYDTLIQQCKNDEEIVAVIA 283 (304)
Q Consensus 220 ~~~i~~l~~~~g~~~~-----~i~v~~~s~rs~~~NA~~~G~~-~~k~Ivl~d~Ll~~l~~~~El~aVla 283 (304)
.+.++.+.+++|++.. +-+-++ .....|.+ ..+.+.+.+.....+ +++.++.+++
T Consensus 92 ~~ll~~l~~~Lgi~~gett~Dg~ftL~--------~~~ClG~C~~aP~~~in~~~~~~l-t~~~~~~il~ 152 (156)
T PRK05988 92 DALAAHAKARLGIDFHQTTADGAVTLE--------PVYCLGLCACSPAAMLDGEVHGRL-DPQRLDALLA 152 (156)
T ss_pred HHHHHHHHHHhCCCCCCcCCCCeEEEE--------eeeecCccCCCCeEEECCEEeCCC-CHHHHHHHHH
Confidence 4556666778887643 223332 23467864 688999999999999 9999998875
No 193
>PF15639 Tox-MPTase3: Metallopeptidase toxin 3
Probab=20.11 E-value=1.6e+02 Score=24.34 Aligned_cols=58 Identities=14% Similarity=0.163 Sum_probs=36.1
Q ss_pred CcEEEEeCCCCCCcccEEEEccCCCCEEEEcHhHHhhCCCHHH---------HHHHHHHHHHHhhcCCH
Q 022024 235 KKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEE---------IVAVIAHELGHWKLNHT 294 (304)
Q Consensus 235 ~~i~v~~~s~rs~~~NA~~~G~~~~k~Ivl~d~Ll~~l~~~~E---------l~aVlaHElgH~k~~H~ 294 (304)
|.|-+.... ..+.-..+++......|-|-..++.+++...+ +.+-+.||+-||-+.|.
T Consensus 50 P~IkI~~~~--~~~A~G~t~p~~~~~~i~I~~~lV~~~Ek~~~~~r~~~~~~v~~TlLHEliHw~~~q~ 116 (135)
T PF15639_consen 50 PYIKITPLV--GGTAYGYTTPDDGSQVIRIDGDLVNMFEKGPGERRAGNVYLVGSTLLHELIHWGDDQN 116 (135)
T ss_pred CEEEEeecc--cceeeeeecCCCCCcEEEeeHHHhhhhhcCCcccccceEEEeehHHHHHHHHhcchhc
Confidence 456555432 22333334444456778888889988732222 56778999999987653
No 194
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.01 E-value=2.7e+02 Score=26.24 Aligned_cols=77 Identities=13% Similarity=0.108 Sum_probs=44.6
Q ss_pred HHHHHHHHhchhchhhhhhceeecccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 022024 113 AGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVL 192 (304)
Q Consensus 113 ~~~~l~~~l~~lPf~~Y~~f~le~~~g~~~~t~~~~~~d~~k~~~l~~vl~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ 192 (304)
...+.-++.+++|.-+.. +...|.+.-++...|+. +++++....+.==++-.+..+...+.+.|...+++
T Consensus 222 klrS~hN~ylTlPvLf~M---iSnHyp~~y~~~~nWli-------l~li~~~g~~IRhfFn~rH~~~~~~~~~~~~~~~l 291 (300)
T PF06181_consen 222 KLRSRHNNYLTLPVLFLM---ISNHYPMTYGHPYNWLI-------LALIMLAGALIRHFFNLRHAGKGKPWWTWAGAALL 291 (300)
T ss_pred HHHhhhcceeHHHHHHHH---HhccCccccccchhHHH-------HHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHH
Confidence 445778888899987765 56788888777777762 12222222222223455556666566666665555
Q ss_pred HHHHHhH
Q 022024 193 SLVMMTL 199 (304)
Q Consensus 193 ~~~~~~~ 199 (304)
...+.++
T Consensus 292 ~~~~~~~ 298 (300)
T PF06181_consen 292 FALAVWL 298 (300)
T ss_pred HHHHHhc
Confidence 4444443
Done!