BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022025
(304 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A25|A Chain A, Crystal Structure Of Siah1 Sbd Bound To The Peptide
Ekpaavvapittg From Sip
Length = 193
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 5/194 (2%)
Query: 106 VAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLK 165
VA S+ PCKY S GC P+ K HE+ C FRPY+CP G+ C G + ++ HL
Sbjct: 1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 60
Query: 166 DDHQ-VDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQ-LGMALVYM 223
H+ + G ++ +D N W++ + +CFG F L E + +
Sbjct: 61 HQHKSITTLQGEDI--VFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFF 117
Query: 224 AFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALY 283
A ++ +G +A+ F+Y LE+ H RRL W+ PRSI + + D L+ ++A
Sbjct: 118 AIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQL 177
Query: 284 FSGGDRTELKLRIT 297
F+ + + I+
Sbjct: 178 FAENGNLGINVTIS 191
>pdb|2AN6|A Chain A, Protein-Peptide Complex
pdb|2AN6|B Chain B, Protein-Peptide Complex
pdb|2AN6|C Chain C, Protein-Peptide Complex
pdb|2AN6|D Chain D, Protein-Peptide Complex
Length = 191
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 5/191 (2%)
Query: 109 SLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDH 168
S+ PCKY S GC P+ K +HE+ C FRPY+CP G+ C G + ++ HL H
Sbjct: 2 SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 61
Query: 169 Q-VDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQ-LGMALVYMAFL 226
+ + G ++ +D N W++ + +CFG F L E + + A +
Sbjct: 62 KSITTLQGEDI--VFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIV 118
Query: 227 RFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSG 286
+ +G +A+ F+Y LE+ H RRL W+ PRSI + + D L+ ++A F+
Sbjct: 119 QLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAE 178
Query: 287 GDRTELKLRIT 297
+ + I+
Sbjct: 179 NGNLGINVTIS 189
>pdb|1K2F|A Chain A, Siah, Seven In Absentia Homolog
pdb|1K2F|B Chain B, Siah, Seven In Absentia Homolog
Length = 190
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 5/191 (2%)
Query: 109 SLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDH 168
S+ PCKY S GC P+ K +HE+ C FRPY+CP G+ C G + ++ HL H
Sbjct: 1 SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 60
Query: 169 Q-VDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQ-LGMALVYMAFL 226
+ + G + ++ +D N W++ + +CFG F L E + + A +
Sbjct: 61 KSITTLQG--EDIVFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIV 117
Query: 227 RFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSG 286
+ +G +A+ F+Y LE+ H RRL W+ PRSI + + D L+ ++A F+
Sbjct: 118 QLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAE 177
Query: 287 GDRTELKLRIT 297
+ + I+
Sbjct: 178 NGNLGINVTIS 188
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3 Ubiquitin-
Protein Ligase Uhrf1
Length = 124
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 15/84 (17%)
Query: 50 VHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNC----CPTCRFDLGNIRCLALEK 105
V E +C C L++ PI H +C +C +R CP CR+DLG + + +
Sbjct: 49 VEETFQCICCQELVFRPITTVCQ-HNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQ 107
Query: 106 VAESLELPCKYQSLGCHDIFPYYG 129
+++ + +FP YG
Sbjct: 108 PLQTV----------LNQLFPGYG 121
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 9/55 (16%)
Query: 48 NGVHELLECPVCTNLMYPPIH-QCPNGHTLCSNCKNRVHN------CCPTCRFDL 95
N + ++LECP+C L+ P+ +C H C C ++ N CP C+ D+
Sbjct: 16 NAMQKILECPICLELIKEPVSTKC--DHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Query: 3 PGGSACKEVVESDHT--------VINYDIKAESNTALTKTSFGLGGKQGIYSNNGVHELL 54
P GS + V+++ T + Y+++ A+T G + + S +H L
Sbjct: 2 PLGSHMSQAVQTNGTQPLSKTWELSLYELQRTPQEAIT------DGLEIVVSPRSLHSEL 55
Query: 55 ECPVCTNLMYPPIHQCPNGHTLCSNCKNRV----HNCCPTCRFDLGNIRCL 101
CP+C +++ + H C++C + CPTCR L + R L
Sbjct: 56 MCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSL 106
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 21 YDIKAESNTALTKTSFGLGGKQGIYSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNC 80
Y+++ A+T G + + S +H L CP+C +++ + H C++C
Sbjct: 8 YELQRTPQEAIT------DGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADC 61
Query: 81 KNRV----HNCCPTCRFDLGNIRCL 101
+ CPTCR L + R L
Sbjct: 62 IITALRSGNKECPTCRKKLVSKRSL 86
>pdb|1JM7|B Chain B, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 117
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 50 VHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNC----CPTC 91
+ +LL C CTN++ P+ H CSNC V +C CP C
Sbjct: 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNC---VSDCIGTGCPVC 61
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 56 CPVCTNLMYPPIH-QCPNGHTLCSNCKNRVHNC----CPTCRFDLGNIRCLALEKVAESL 110
C C L+Y P+ +C H +C +C R CP CR DLG + ++ ++L
Sbjct: 81 CVCCQELVYQPVTTEC--FHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTL 138
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 21 YDIKAESNTALTKTSFGLGGKQGIYSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNC 80
Y+++ A+T G + + S +H L CP+C +++ + H C++C
Sbjct: 27 YELQRTPQEAIT------DGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADC 80
Query: 81 KNRV----HNCCPTCRFDLGNIRCL 101
+ CPTCR L + R L
Sbjct: 81 IITALRSGNKECPTCRKKLVSKRSL 105
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 40 GKQGIYSN-NGVHELLECPVCT-----NLMYPPIHQCPNGHTLCSNCKNRV 84
G G N + + E+LECP+C + P + C GHT+C C ++
Sbjct: 1 GSSGSSGNLDALREVLECPICMESFTEEQLRPKLLHC--GHTICRQCLEKL 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,744,957
Number of Sequences: 62578
Number of extensions: 403384
Number of successful extensions: 766
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 29
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)