BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022027
(304 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FBT|A Chain A, Wrn Exonuclease
pdb|2FBV|A Chain A, Wrn Exonuclease, Mn Complex
pdb|2FBX|A Chain A, Wrn Exonuclease, Mg Complex
pdb|2FBY|A Chain A, Wrn Exonuclease, Eu Complex
pdb|2FC0|A Chain A, Wrn Exonuclease, Mn Dgmp Complex
Length = 205
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 113/199 (56%), Gaps = 9/199 (4%)
Query: 89 PAMRFGGQILYSRTSTEVEMAAIELRRILEANKSEAGQVVVGFDIEWKPTFRKGVLPRKA 148
P + F G I+YS +++ + ++ L VVGFD+EW P + +G L K
Sbjct: 14 PFLEFTGSIVYSYDASDCSFLSEDISMSLSDGD------VVGFDMEWPPLYNRGKLG-KV 66
Query: 149 AVMQICGDSNHCYVMQIIH-SGIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKA 207
A++Q+C + CY+ + S P L++LLE+ + K GVGI D K+ RD+++ +K
Sbjct: 67 ALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKKAGVGIEGDQWKLLRDFDIKLKN 126
Query: 208 SEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAATD 267
+L+ +A K+ ++ W L SL + L+ K+L K IR NW L++DQ LYAATD
Sbjct: 127 FVELTDVANKKLKC-TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQKLYAATD 185
Query: 268 AFASWHLYQVLKSLPEPVK 286
A+A + +Y+ L+ L + V+
Sbjct: 186 AYAGFIIYRNLEILDDTVQ 204
>pdb|2E6L|A Chain A, Structure Of Mouse Wrn Exonuclease Domain
pdb|2E6M|A Chain A, Structure Of Mouse Werner Exonuclease Domain
Length = 208
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 112/199 (56%), Gaps = 9/199 (4%)
Query: 89 PAMRFGGQILYSRTSTEVEMAAIELRRILEANKSEAGQVVVGFDIEWKPTFRKGVLPRKA 148
P + F G I+YS +++ + ++ L VVGFD+EW P ++ G R
Sbjct: 9 PFLEFPGSIVYSYEASDCSFLSEDISMRLSDGD------VVGFDMEWPPIYKPGKRSR-V 61
Query: 149 AVMQICGDSNHCYVMQIIH-SGIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKA 207
AV+Q+C + CY+ I S P L++LLE+ +I K GVGI D K+ RD++V +++
Sbjct: 62 AVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLES 121
Query: 208 SEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAATD 267
+L+ +A K+ ++ W L L + ++ K+L K IR NW L++DQ LYAATD
Sbjct: 122 FVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATD 180
Query: 268 AFASWHLYQVLKSLPEPVK 286
A+A +YQ L +L + V+
Sbjct: 181 AYAGLIIYQKLGNLGDTVQ 199
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
Query: 93 FGGQILYSRTSTEVEMAAIEL------------RRILEANKSEAGQVVVGFDIEWKPTFR 140
FGG++ ++ T TE AAI++ RIL A+ S G+ + +P ++
Sbjct: 96 FGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQ 155
Query: 141 KGVLP 145
K P
Sbjct: 156 KPFEP 160
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
Query: 93 FGGQILYSRTSTEVEMAAIEL------------RRILEANKSEAGQVVVGFDIEWKPTFR 140
FGG++ ++ T TE AAI++ RIL A+ S G+ + +P ++
Sbjct: 84 FGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQ 143
Query: 141 KGVLP 145
K P
Sbjct: 144 KPFEP 148
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 201 YNVSVKASEDLS--YLAKHKIGGDSQKWGLAS--LTEMLVCKELKKPNRIRLGNWEADVL 256
Y V KA L+ +A KI D++ G+ S + E+ + KEL PN ++L DV+
Sbjct: 15 YGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL----LDVI 70
Query: 257 SKDQLLYAATDAFASWHLYQVLKSL 281
+ LY + H++Q LK+
Sbjct: 71 HTENKLYLVFE-----HVHQDLKTF 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,093,675
Number of Sequences: 62578
Number of extensions: 297271
Number of successful extensions: 857
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 846
Number of HSP's gapped (non-prelim): 6
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)