Query 022027
Match_columns 304
No_of_seqs 204 out of 1303
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 12:54:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022027.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022027hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e6m_A Werner syndrome ATP-dep 100.0 8.1E-32 2.8E-36 236.8 21.4 196 82-285 2-198 (208)
2 1vk0_A Hypothetical protein; h 100.0 3.7E-30 1.3E-34 226.6 13.4 174 98-280 22-205 (206)
3 3saf_A Exosome component 10; e 99.9 2.1E-24 7.2E-29 208.7 20.2 167 95-280 108-275 (428)
4 2hbj_A Exosome complex exonucl 99.9 4.3E-23 1.5E-27 199.0 21.5 177 85-280 74-252 (410)
5 1yt3_A Ribonuclease D, RNAse D 99.9 2.1E-22 7E-27 192.1 19.9 166 97-280 3-168 (375)
6 3cym_A Uncharacterized protein 99.8 9E-20 3.1E-24 177.2 17.4 167 93-280 14-185 (440)
7 2kfn_A Klenow fragment of DNA 99.7 6E-16 2E-20 155.9 18.0 171 97-283 7-194 (605)
8 3pv8_A DNA polymerase I; DNA p 99.6 6.8E-15 2.3E-19 147.5 12.2 147 126-280 29-179 (592)
9 1x9m_A DNA polymerase; DNA plo 99.3 5.2E-12 1.8E-16 129.1 9.6 149 128-283 1-184 (698)
10 4dfk_A DNA polymerase I, therm 98.9 1.9E-09 6.4E-14 107.0 8.1 116 127-280 11-126 (540)
11 1bgx_T TAQ DNA polymerase; DNA 98.1 4.4E-06 1.5E-10 86.8 8.2 114 127-280 305-418 (832)
12 3v9w_A Ribonuclease T; DEDD nu 97.4 0.0012 4.2E-08 57.9 11.5 79 181-280 133-219 (235)
13 2p1j_A POLIII, DNA polymerase 96.6 0.051 1.7E-06 45.6 14.0 88 173-283 85-177 (186)
14 1wlj_A Interferon stimulated g 96.1 0.039 1.3E-06 46.5 10.2 90 172-280 75-167 (189)
15 3mxm_B Three prime repair exon 95.0 0.057 1.9E-06 47.6 7.5 106 173-299 107-229 (242)
16 1y97_A Three prime repair exon 94.2 0.15 5.1E-06 44.2 8.2 90 172-279 101-207 (238)
17 3u3y_B Three prime repair exon 94.0 0.17 5.8E-06 46.5 8.4 105 173-298 107-228 (314)
18 2gui_A DNA polymerase III epsi 93.1 0.74 2.5E-05 38.4 10.4 88 173-281 88-184 (194)
19 1w0h_A 3'-5' exonuclease ERI1; 92.0 0.78 2.7E-05 38.5 9.2 93 173-283 91-196 (204)
20 2f96_A Ribonuclease T; RNAse, 91.5 0.45 1.5E-05 40.9 7.1 77 182-279 126-210 (224)
21 1qht_A Protein (DNA polymerase 90.0 2.2 7.7E-05 43.7 11.9 152 126-281 135-329 (775)
22 1zbh_A 3'-5' exonuclease ERI1; 87.7 2.2 7.6E-05 38.4 9.0 92 173-282 159-263 (299)
23 1zbu_A ERI-1 homolog, 3'-5' ex 85.8 3 0.0001 38.6 8.8 92 173-282 209-313 (349)
24 3ikm_A DNA polymerase subunit 83.6 0.4 1.4E-05 50.6 1.9 98 183-280 195-345 (1172)
25 2qxf_A Exodeoxyribonuclease I; 81.8 3.3 0.00011 40.1 7.6 88 174-280 88-199 (482)
26 1s5j_A DNA polymerase I; repli 70.9 71 0.0024 32.9 14.4 99 170-275 260-386 (847)
27 3cg7_A CRN-4, cell death-relat 57.8 8.3 0.00028 34.8 4.0 90 173-282 101-209 (308)
28 2xri_A ERI1 exoribonuclease 3; 48.5 34 0.0012 28.9 6.2 89 173-282 110-214 (224)
29 2a1r_A Poly(A)-specific ribonu 48.1 40 0.0014 31.9 7.1 110 169-280 269-395 (430)
30 2gbz_A Oligoribonuclease; ORN, 37.8 90 0.0031 25.5 7.1 28 173-200 91-122 (194)
31 3d45_A Poly(A)-specific ribonu 32.2 50 0.0017 31.9 5.1 103 173-280 268-390 (507)
32 1noy_A Protein (DNA polymerase 25.0 78 0.0027 29.1 4.9 70 209-282 268-339 (388)
No 1
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=100.00 E-value=8.1e-32 Score=236.79 Aligned_cols=196 Identities=35% Similarity=0.631 Sum_probs=161.9
Q ss_pred cccccCCCceecCCcEEEecCHHHHHHHHHHHHHHHhhcccccCCceEEEEeeeecCccCCCCCCcEEEEEEEecCCeEE
Q 022027 82 ANMRLKYPAMRFGGQILYSRTSTEVEMAAIELRRILEANKSEAGQVVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCY 161 (304)
Q Consensus 82 ~~~~~~lP~~~~~g~i~~i~t~~~l~~~~~~l~~~~~~~~~~~~~~~vgfD~E~~~~~~~g~~~~~valiQL~~~~~~~~ 161 (304)
+.++++||.+.|+|+|+|+++.+++..+++.+...+. ....+|||+||.+.|..+. ..+++++|+|+.++.|+
T Consensus 2 ~~~~~~lp~~~f~g~i~~i~~~~~~~~~~~~~~~~l~------~~~~v~~D~E~~~~~~~~~-~~~~~~iqla~~~~~~~ 74 (208)
T 2e6m_A 2 SVLEDNLPFLEFPGSIVYSYEASDCSFLSEDISMRLS------DGDVVGFDMEWPPIYKPGK-RSRVAVIQLCVSESKCY 74 (208)
T ss_dssp -----CCCBCCCCSEEEEECSHHHHHHHHHHHHHHCC------TTCEEEEEEECCC---CCS-CCCCCEEEEECSSSEEE
T ss_pred cchhccCCccccCCcEEEEeCHHHHHHHHHHHHHHhc------cCCEEEEEeecCCCCCCCC-CCCeEEEEEecCCCeEE
Confidence 4678999999999999999999999877766654332 2467999999987533221 35799999998657899
Q ss_pred EEecCCC-CCcHHHHHhHcCCCceEEEecchHHHHHHHHhcCCccCCcchHHHHHHHHhCCCCCCCCHHHHHHHHcCccc
Q 022027 162 VMQIIHS-GIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKEL 240 (304)
Q Consensus 162 l~~l~~~-~~~~~L~~lL~d~~i~KVG~~ik~Dl~~L~~~~gi~l~~~~Dl~~LA~ylL~~~~~~~sL~~La~~~Lg~~l 240 (304)
+|++.+. .+++.|+++|+|+.+.||||++|+|++.|.+.+|+.+.+++|++++|+|++++ ..++||+.|++++||..+
T Consensus 75 ~i~~~~~~~~~~~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~-~~~~~L~~L~~~~l~~~~ 153 (208)
T 2e6m_A 75 LFHISSMSVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQL 153 (208)
T ss_dssp EECGGGCSSCCHHHHHHHTCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTC-CCCCCHHHHHHHHHSCBC
T ss_pred EEECcccccchHHHHHHhcCCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccC-CCChhHHHHHHHHcCCCc
Confidence 9988653 57789999999999999999999999999777999999988966999999986 468999999999999998
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Q 022027 241 KKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLPEPV 285 (304)
Q Consensus 241 ~K~~~i~~s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~l~~~~ 285 (304)
.|+++.+++||..+||+++|+.|||.||++++.||..|.+.....
T Consensus 154 ~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~~ 198 (208)
T 2e6m_A 154 LKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTV 198 (208)
T ss_dssp CCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred CCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 887677899999999999999999999999999999999866544
No 2
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.97 E-value=3.7e-30 Score=226.61 Aligned_cols=174 Identities=17% Similarity=0.237 Sum_probs=139.9
Q ss_pred EEecCHHHHHHHHHHHHHH-HhhcccccCCceEEEEeeeecCcc-----CCCCCCcEEEEEEEecCCeEEEEecCCCCCc
Q 022027 98 LYSRTSTEVEMAAIELRRI-LEANKSEAGQVVVGFDIEWKPTFR-----KGVLPRKAAVMQICGDSNHCYVMQIIHSGIP 171 (304)
Q Consensus 98 ~~i~t~~~l~~~~~~l~~~-~~~~~~~~~~~~vgfD~E~~~~~~-----~g~~~~~valiQL~~~~~~~~l~~l~~~~~~ 171 (304)
++|.+.+++..++..+... +. .+..+||||+||.+.+. +.....++++||||++ +.|++|++ ...++
T Consensus 22 ~~v~~~~~l~~~~~~~~~~~~~-----~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~-~~~~l~~l-~~~~~ 94 (206)
T 1vk0_A 22 IDVGSSTDISPYLSLIREDSIL-----NGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTR-NLCLFLRL-PKPFH 94 (206)
T ss_dssp EECCSSCCCHHHHHHHHHHHHH-----HSTTEEEEEEEEECCC------CGGGGCEEEEEEEECS-SEEEEEEC-CSSCC
T ss_pred EEEecHHHHHHHHHHHHHhhhh-----cCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecC-CCeEEEec-cccCC
Confidence 3444555555555554221 10 13578999999997641 1111148999999998 56999999 34455
Q ss_pred HH---HHHhHcCCCceEEEecchHHHHHHHHhcCCccCCcchHHHHHHHHhCCC-CCCCCHHHHHHHHcCcccCCCCccc
Q 022027 172 PS---LQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGD-SQKWGLASLTEMLVCKELKKPNRIR 247 (304)
Q Consensus 172 ~~---L~~lL~d~~i~KVG~~ik~Dl~~L~~~~gi~l~~~~Dl~~LA~ylL~~~-~~~~sL~~La~~~Lg~~l~K~~~i~ 247 (304)
.. |++||+|++|+||||++++|+.+|++.||+.+.+++|++.+|+..+|.+ ...+||+.|++.+||..+ |.++++
T Consensus 95 ~~L~~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~l-K~k~~~ 173 (206)
T 1vk0_A 95 DNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDL-GQLDSI 173 (206)
T ss_dssp GGGHHHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCC-HHHHHH
T ss_pred ccHHHHHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcC-CCCCcc
Confidence 55 8899999999999999999999999999999999999988987778742 358999999999999999 877789
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 022027 248 LGNWEADVLSKDQLLYAATDAFASWHLYQVLKS 280 (304)
Q Consensus 248 ~s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~ 280 (304)
+|||.. ||+++|+.|||.|||+++.||+.|..
T Consensus 174 ~SdW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 174 EAKWEK-AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999 99999999999999999999999863
No 3
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.92 E-value=2.1e-24 Score=208.69 Aligned_cols=167 Identities=18% Similarity=0.183 Sum_probs=145.6
Q ss_pred CcEEEecCHHHHHHHHHHHHHHHhhcccccCCceEEEEeeeecCccCCCCCCcEEEEEEEecCCeEEEEecCCC-CCcHH
Q 022027 95 GQILYSRTSTEVEMAAIELRRILEANKSEAGQVVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHS-GIPPS 173 (304)
Q Consensus 95 g~i~~i~t~~~l~~~~~~l~~~~~~~~~~~~~~~vgfD~E~~~~~~~g~~~~~valiQL~~~~~~~~l~~l~~~-~~~~~ 173 (304)
..+.+|++.+++..+++.+.. ...||||+||.+.. +. .+++++||||+. +.+++|++... .....
T Consensus 108 ~~y~~I~t~e~L~~~l~~L~~----------~~~vavDtE~~~~~-~~--~~~l~lIQLa~~-~~~~lidpl~l~~~l~~ 173 (428)
T 3saf_A 108 TPCHFISSLDELVELNEKLLN----------CQEFAVNLEHHSYR-SF--LGLTCLMQISTR-TEDFIIDTLELRSDMYI 173 (428)
T ss_dssp SCEEEECSHHHHHHHHHHHTT----------CSEEEEEEEEECTT-CS--SCEEEEEEEECS-SCEEEEETTTTGGGGGG
T ss_pred CCcEEECCHHHHHHHHHHHhc----------CCeEEEEEEecCCC-CC--CCeEEEEEEEeC-CcEEEEEeccchhhHHH
Confidence 357899999999999988765 68999999997642 21 368999999987 46888886543 35678
Q ss_pred HHHhHcCCCceEEEecchHHHHHHHHhcCCccCCcchHHHHHHHHhCCCCCCCCHHHHHHHHcCcccCCCCccccCCCCC
Q 022027 174 LQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEA 253 (304)
Q Consensus 174 L~~lL~d~~i~KVG~~ik~Dl~~L~~~~gi~l~~~~Dl~~LA~ylL~~~~~~~sL~~La~~~Lg~~l~K~~~i~~s~W~~ 253 (304)
|+++|+|+.|.||||++|+|+.+|.+.+|+.+.+++|+ ++|+|+++.+ ++||+.|+++|||..+.|.. +.++|..
T Consensus 174 L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT-~lAa~lL~~~--~~gL~~Lv~~~Lg~~l~K~~--~~sdW~~ 248 (428)
T 3saf_A 174 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT-HQAARLLNLG--RHSLDHLLKLYCNVDSNKQY--QLADWRI 248 (428)
T ss_dssp GHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEH-HHHHHHTTCS--CCSHHHHHHHHHCCCCCCTT--TTSCTTC
T ss_pred HHHHHcCCCceEEEeehHHHHHHHHHHcCCCcCceeec-hhHHHHhCCC--CCCHHHHHHHHcCCCCCccc--ccccccc
Confidence 99999999999999999999999977999999999999 8899999864 58999999999999998854 7899999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 022027 254 DVLSKDQLLYAATDAFASWHLYQVLKS 280 (304)
Q Consensus 254 ~pLt~~Qi~YAA~DA~a~~~L~~~L~~ 280 (304)
+||+++|+.|||.||++++.||..|..
T Consensus 249 rpLs~~q~~YAA~DA~~ll~L~~~L~~ 275 (428)
T 3saf_A 249 RPLPEEMLSYARDDTHYLLYIYDKMRL 275 (428)
T ss_dssp SSCCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999865
No 4
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.91 E-value=4.3e-23 Score=198.99 Aligned_cols=177 Identities=24% Similarity=0.268 Sum_probs=149.1
Q ss_pred ccCCCceecCCc-EEEecCHHHHHHHHHHHHHHHhhcccccCCceEEEEeeeecCccCCCCCCcEEEEEEEecCCeEEEE
Q 022027 85 RLKYPAMRFGGQ-ILYSRTSTEVEMAAIELRRILEANKSEAGQVVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVM 163 (304)
Q Consensus 85 ~~~lP~~~~~g~-i~~i~t~~~l~~~~~~l~~~~~~~~~~~~~~~vgfD~E~~~~~~~g~~~~~valiQL~~~~~~~~l~ 163 (304)
.+..|...|.+. +.+|++.++++.+++.+.. ...||||+||.+. ... .+++++||||+. +.+|++
T Consensus 74 ~~~~~~~~~~~~~~~~I~t~~~L~~~~~~L~~----------~~~vavDtE~~~~-~~~--~~~l~liQla~~-~~~yli 139 (410)
T 2hbj_A 74 REEIPSKSWDDSVPIWVDTSTELESMLEDLKN----------TKEIAVDLEHHDY-RSY--YGIVCLMQISTR-ERDYLV 139 (410)
T ss_dssp CCCCCCCCGGGCCCEEECSHHHHHHHHHHHTT----------CSEEEEEEEEECS-SSS--SCEEEEEEEECS-SCEEEE
T ss_pred CCCCCCCCcCCCCcEEeCCHHHHHHHHHHHhh----------CCceEEEeeecCC-cCC--CCcEEEEEEEEC-CcEEEE
Confidence 355677777765 7888888888888877644 5789999999863 221 367999999986 579999
Q ss_pred ecCCC-CCcHHHHHhHcCCCceEEEecchHHHHHHHHhcCCccCCcchHHHHHHHHhCCCCCCCCHHHHHHHHcCcccCC
Q 022027 164 QIIHS-GIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKK 242 (304)
Q Consensus 164 ~l~~~-~~~~~L~~lL~d~~i~KVG~~ik~Dl~~L~~~~gi~l~~~~Dl~~LA~ylL~~~~~~~sL~~La~~~Lg~~l~K 242 (304)
+.... .....|+++|+|+.|.||||++|.|+..|.+.+|+.+.+++|+ ++|+|+|+++ ++||+.|+++|||..+.|
T Consensus 140 d~l~l~~~l~~L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi~~~~~fDt-~lAa~LL~~~--~~~L~~L~~~~lg~~l~K 216 (410)
T 2hbj_A 140 DTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDT-YHASKAIGLP--RHSLAYLLENFANFKTSK 216 (410)
T ss_dssp ETTTTTTTGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEH-HHHHHHHTCS--CCSHHHHHHHHSCCCCCC
T ss_pred echhhhhhHHHHHHHHcCCCceEEEEehHHHHHHHHHHcCCCcCCEEEc-HHHHHHhCCC--ccCHHHHHHHHcCCCCCc
Confidence 85322 3456899999999999999999999999987899999999999 8899999864 799999999999998877
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 022027 243 PNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKS 280 (304)
Q Consensus 243 ~~~i~~s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~ 280 (304)
+ .++++|..+||+++|+.|||.||++++.||..|..
T Consensus 217 ~--~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~ 252 (410)
T 2hbj_A 217 K--YQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRN 252 (410)
T ss_dssp T--TTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred c--ccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 46889999999999999999999999999999875
No 5
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.89 E-value=2.1e-22 Score=192.12 Aligned_cols=166 Identities=19% Similarity=0.181 Sum_probs=140.2
Q ss_pred EEEecCHHHHHHHHHHHHHHHhhcccccCCceEEEEeeeecCccCCCCCCcEEEEEEEecCCeEEEEecCCCCCcHHHHH
Q 022027 97 ILYSRTSTEVEMAAIELRRILEANKSEAGQVVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHSGIPPSLQL 176 (304)
Q Consensus 97 i~~i~t~~~l~~~~~~l~~~~~~~~~~~~~~~vgfD~E~~~~~~~g~~~~~valiQL~~~~~~~~l~~l~~~~~~~~L~~ 176 (304)
+.+|++.++++.+++.+.. ...|+||+||...... .+++++||||++ +.+|+++.......+.|++
T Consensus 3 ~~~I~t~~~l~~~~~~l~~----------~~~va~D~E~~~~~~~---~~~l~liqla~~-~~~~lid~~~l~~~~~L~~ 68 (375)
T 1yt3_A 3 YQMITTDDALASLCEAVRA----------FPAIALDTEFVRTRTY---YPQLGLIQLFDG-EHLALIDPLGITDWSPLKA 68 (375)
T ss_dssp CEEECSHHHHHHHHHHHTT----------SSEEEEEEEEECCSCS---SCEEEEEEEECS-SCEEEECGGGCSCCHHHHH
T ss_pred eEEeCCHHHHHHHHHHHcC----------CCeEEEEeeecCCCcC---CCceEEEEEecC-CcEEEEeCCCCCChHHHHH
Confidence 4567788888888876643 6789999999864211 257999999986 4789988432234578999
Q ss_pred hHcCCCceEEEecchHHHHHHHHhcCCccCCcchHHHHHHHHhCCCCCCCCHHHHHHHHcCcccCCCCccccCCCCCCCC
Q 022027 177 LLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEADVL 256 (304)
Q Consensus 177 lL~d~~i~KVG~~ik~Dl~~L~~~~gi~l~~~~Dl~~LA~ylL~~~~~~~sL~~La~~~Lg~~l~K~~~i~~s~W~~~pL 256 (304)
+|+|+.|.||||++|+|+..|.+.+|+.+.++||+ ++|+|++++. .++||+.|+++|||..+.|+. ++++|..+||
T Consensus 69 ll~d~~i~Kv~h~~k~Dl~~L~~~~Gi~~~~~fDt-~lAa~lL~~~-~~~~L~~L~~~~l~~~l~K~~--~~sdw~~rpL 144 (375)
T 1yt3_A 69 ILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDT-QILAAFCGRP-MSWGFASMVEEYSGVTLDKSE--SRTDWLARPL 144 (375)
T ss_dssp HHHCTTSEEEESSCHHHHHHHHHHHSSCCSSEEEH-HHHHHHTTCC-TTCCHHHHHHHHHCCCCCCTT--TTSCTTSSSC
T ss_pred HHcCCCceEEEeeHHHHHHHHHHHcCCCCCcEEEc-HHHHHHcCCC-CChhHHHHHHHHcCCCCCCCc--ccCCCCCCCC
Confidence 99999999999999999999977799999888999 8888999863 689999999999999988764 5789999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhC
Q 022027 257 SKDQLLYAATDAFASWHLYQVLKS 280 (304)
Q Consensus 257 t~~Qi~YAA~DA~a~~~L~~~L~~ 280 (304)
+++|+.|||.||++++.||..|..
T Consensus 145 ~~~q~~YAa~Da~~l~~L~~~L~~ 168 (375)
T 1yt3_A 145 TERQCEYAAADVWYLLPITAKLMV 168 (375)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999874
No 6
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.83 E-value=9e-20 Score=177.24 Aligned_cols=167 Identities=18% Similarity=0.109 Sum_probs=137.5
Q ss_pred cCCcEEEecCHHHHHHHHHHHHHHHhhcccccCC-ceEEEEeeeecCccCCCCCCcEEEEEEEecCCeEEEEecCCC---
Q 022027 93 FGGQILYSRTSTEVEMAAIELRRILEANKSEAGQ-VVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHS--- 168 (304)
Q Consensus 93 ~~g~i~~i~t~~~l~~~~~~l~~~~~~~~~~~~~-~~vgfD~E~~~~~~~g~~~~~valiQL~~~~~~~~l~~l~~~--- 168 (304)
+.|.+.+|++.++++.+++.+.. . ..|+||+||...+. . .+++++||||+.++.+|+|+....
T Consensus 14 ~~~~~~~I~t~e~L~~~~~~L~~----------~~~~vavDtE~~~~~~-~--~~~l~liQla~~~~~~~lid~l~~~~~ 80 (440)
T 3cym_A 14 REGVPNVIDTLPAFRDYCSELAS----------SHGSLAADAERASGFR-Y--GHEDWLVQFKRDGAGIGLLDPQALAAA 80 (440)
T ss_dssp TTCCCCEECSHHHHHHHHHHHHS----------CEEEEEEEEEECTTTS-S--SCCEEEEEEEEETTEEEEECHHHHHHT
T ss_pred CCCCCEeeCCHHHHHHHHHHHHh----------cCCeEEEEeeecCCCC-C--CCCEEEEEEEECCCcEEEEEcCCcccc
Confidence 34555677788888888887644 4 77999999976422 1 257999999987566888875211
Q ss_pred -CCcHHHHHhHcCCCceEEEecchHHHHHHHHhcCCccCCcchHHHHHHHHhCCCCCCCCHHHHHHHHcCcccCCCCccc
Q 022027 169 -GIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIR 247 (304)
Q Consensus 169 -~~~~~L~~lL~d~~i~KVG~~ik~Dl~~L~~~~gi~l~~~~Dl~~LA~ylL~~~~~~~sL~~La~~~Lg~~l~K~~~i~ 247 (304)
.....|+++|+|+ .||||++|.|+..| +++|+.+.+.||+ ++|+|+|++ .++||+.|++.|+|..+.|. .+
T Consensus 81 ~~~l~~L~~lL~d~--~KV~h~~k~Dl~~L-~~~gi~~~~~fDt-~lAa~lL~~--~~~gL~~L~~~~lg~~~~K~--~~ 152 (440)
T 3cym_A 81 GADWNDFNRAVGDA--VWILHDSLQDLPGF-DELGMEPQRLFDT-EIAARLLGL--KRFGLAAVTEHFLGLTLAKE--HS 152 (440)
T ss_dssp TCCHHHHHHHHTTC--EEEESSHHHHHHHH-HHHTCCCCEEEEH-HHHHHHTTC--SSCSHHHHHHHHHCEECCCC--CT
T ss_pred ccCHHHHHHHHCCC--CEEEEcCHHHHHHH-HHcCCcCCceehH-HHHHHHhCC--CCCCHHHHHHHHhCCCcccc--cc
Confidence 1256899999997 79999999999999 5899999888999 899999996 38999999999999998875 36
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 022027 248 LGNWEADVLSKDQLLYAATDAFASWHLYQVLKS 280 (304)
Q Consensus 248 ~s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~ 280 (304)
.++|..+||+++|+.|||.||++++.||..|..
T Consensus 153 ~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~ 185 (440)
T 3cym_A 153 AADWSYRPLPRDWRNYAALDVELLIELETKMRA 185 (440)
T ss_dssp TCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999864
No 7
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.69 E-value=6e-16 Score=155.93 Aligned_cols=171 Identities=18% Similarity=0.175 Sum_probs=132.5
Q ss_pred EEEecCHHHHHHHHHHHHHHHhhcccccCCceEEEEeeeecCccCCCCCCcEEEEEEEecCCeEEEEecCCC------CC
Q 022027 97 ILYSRTSTEVEMAAIELRRILEANKSEAGQVVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHS------GI 170 (304)
Q Consensus 97 i~~i~t~~~l~~~~~~l~~~~~~~~~~~~~~~vgfD~E~~~~~~~g~~~~~valiQL~~~~~~~~l~~l~~~------~~ 170 (304)
+.++++.++++.+++.+.. ...++||+|+.+.... ..++++||+++.++.++++++.+. .+
T Consensus 7 y~~I~~~~~l~~~~~~l~~----------~~~va~DtEttgl~~~---~~~iv~I~~~~~~g~~~yip~~~~~~~~~~~l 73 (605)
T 2kfn_A 7 YVTILDEETLKAWIAKLEK----------APVFAFDTETDSLDNI---SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQI 73 (605)
T ss_dssp SEECCSHHHHHHHHHHHHT----------SSSEEEEEEESCSCTT---TCCEEEEEEEEETTEEEEEECCCCSTTCCCCC
T ss_pred eEEecCHHHHHHHHHhccc----------CCeEEEEEecCCCCcc---cCceEEEEEEEcCCcEEEEecccccccccccc
Confidence 4567777888888876644 5779999999865211 257899999975577778876541 11
Q ss_pred -----cHHHHHhHcCCCceEEEecchHHHHHHHHhcCCccCC-cchHHHHHHHHhCCCCCCCCHHHHHHHHcCcccCC--
Q 022027 171 -----PPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKA-SEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKK-- 242 (304)
Q Consensus 171 -----~~~L~~lL~d~~i~KVG~~ik~Dl~~L~~~~gi~l~~-~~Dl~~LA~ylL~~~~~~~sL~~La~~~Lg~~l~K-- 242 (304)
.+.|+++|+++.+.||+||+|+|+..| ..+|+.+.+ ++|+ ++++|+|+++..+++|+.|+++||+....+
T Consensus 74 ~~~~vl~~L~~~L~d~~i~kV~hnak~D~~~L-~~~Gi~l~~~~~DT-~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~ 151 (605)
T 2kfn_A 74 SRERALELLKPLLEDEKALKVGQNLKYDRGIL-ANYGIELRGIAFDT-MLESYILNSVAGRHDMDSLAERWLKHKTITFE 151 (605)
T ss_dssp CHHHHHHHHHHHHTCTTSCEEESSHHHHHHHH-HTTTCCCCCEEEEH-HHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcHHHHHHH-HHCCCCCCCccccH-HHHHHHhCCCCCCCCHHHHHHHhcCCCcccHH
Confidence 247999999999999999999999999 568999988 4798 888899997656899999999999876532
Q ss_pred ---CCccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 022027 243 ---PNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLPE 283 (304)
Q Consensus 243 ---~~~i~~s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~l~~ 283 (304)
++....++|...++ +++..||+.||++++.||..|...-.
T Consensus 152 ~~~gKg~~~~~~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L~ 194 (605)
T 2kfn_A 152 EIAGKGKNQLTFNQIAL-EEAGRYAAEDADVTLQLHLKMWPDLQ 194 (605)
T ss_dssp HHHCSSTTCCCGGGSCH-HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCCCcccCCcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11123457877666 67899999999999999999986433
No 8
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=99.58 E-value=6.8e-15 Score=147.49 Aligned_cols=147 Identities=12% Similarity=-0.004 Sum_probs=117.6
Q ss_pred CceEEEEeeeecCccCCCCCCcEEEEEEEecCCeEEEEecCCCCCcHHHHHhHcCCCceEEEecchHHHHHHHHhcCCcc
Q 022027 126 QVVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHSGIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSV 205 (304)
Q Consensus 126 ~~~vgfD~E~~~~~~~g~~~~~valiQL~~~~~~~~l~~l~~~~~~~~L~~lL~d~~i~KVG~~ik~Dl~~L~~~~gi~l 205 (304)
....++|+|..... . ...++++||+|..+ .+|++++.+....+.|+++|+|+.+.|||||+|+|++.| ..+|+.+
T Consensus 29 ~~~~aldtE~~~~~-~--~~a~Lvgisla~~~-~a~yIp~~~~~~l~~Lk~lLed~~i~KV~hn~K~Dl~vL-~~~Gi~l 103 (592)
T 3pv8_A 29 ADKAALVVEVVEEN-Y--HDAPIVGIAVVNEH-GRFFLRPETALADPQFVAWLGDETKKKSMFDSKRAAVAL-KWKGIEL 103 (592)
T ss_dssp CSEEEEEEECCSSS-C--TTCCCCEEEEEETT-EEEEECHHHHTTCHHHHHHHTCTTSEEEESSHHHHHHHH-HHTTCCC
T ss_pred ccCcEEEEEEcCCc-c--CcccEEEEEEEcCC-ceEEEccchhhHHHHHHHHHhCCCCeEEEechHHHHHHH-HHcCCCC
Confidence 34568999986532 1 12578899999874 678888754456788999999999999999999999999 6689999
Q ss_pred CCc-chHHHHHHHHhCCCCCCCCHHHHHHHHcCcccCCCCccccCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 022027 206 KAS-EDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEA---DVLSKDQLLYAATDAFASWHLYQVLKS 280 (304)
Q Consensus 206 ~~~-~Dl~~LA~ylL~~~~~~~sL~~La~~~Lg~~l~K~~~i~~s~W~~---~pLt~~Qi~YAA~DA~a~~~L~~~L~~ 280 (304)
.++ +|+ ++|+|+|+++..+++|++|+++||+..+.+.++ ..+|.. .+..+.+..|||.||.++++||+.|.+
T Consensus 104 ~g~~fDT-mLAAYLL~p~~~~~~L~~La~~yLg~~l~~~ee--~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~ 179 (592)
T 3pv8_A 104 CGVSFDL-LLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEA--VYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLD 179 (592)
T ss_dssp CCEEEEH-HHHHHHHCGGGCCCSHHHHHGGGTCCSSCCHHH--HHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchH-HHHHHHcCCCCCCCCHHHHHHHHcCCCCchHHH--hcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876 698 999999998656899999999999998876532 223432 334467899999999999999999874
No 9
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.29 E-value=5.2e-12 Score=129.15 Aligned_cols=149 Identities=13% Similarity=0.026 Sum_probs=112.4
Q ss_pred eEEEEeeeecCccCCCCCCcEEEEEEEecC-CeEEEEecCCC-CCcHHHHHhHcCCCceEEEecc-hHHHHHHHHhc---
Q 022027 128 VVGFDIEWKPTFRKGVLPRKAAVMQICGDS-NHCYVMQIIHS-GIPPSLQLLLEDSTILKVGVGI-GSDAGKVYRDY--- 201 (304)
Q Consensus 128 ~vgfD~E~~~~~~~g~~~~~valiQL~~~~-~~~~l~~l~~~-~~~~~L~~lL~d~~i~KVG~~i-k~Dl~~L~~~~--- 201 (304)
.|+||+|+.+.... ..+++++|++... +.+++++.... ...+.|+++|+ +.+.||+||+ ++|+..|.+.+
T Consensus 1 ~vv~D~ETtGl~~~---~d~i~~iqi~~~~~~~~~~~~p~~i~~~l~~L~~~l~-~~~~kV~HNa~kfD~~~L~~~~~~~ 76 (698)
T 1x9m_A 1 MIVSDIEANALLES---VTKFHCGVIYDYSTAEYVSYRPSDFGAYLDALEAEVA-RGGLIVFHNGHKYDVPALTKLAKLQ 76 (698)
T ss_dssp CEEEEEEESSCGGG---CCCEEEEEEEETTTTEEEEECGGGHHHHHHHHHHHHH-TTCCEEESSTTTTHHHHHHHHHHHH
T ss_pred CEEEEcCCCCcCCC---CCEEEEEEEEecCCCcEEEEChHHHHHHHHHHHHHHh-cCCeEEEcCChHHHHHHHHHhhhhc
Confidence 47899999875432 2589999999743 46777764321 24578999999 8999999998 99999996553
Q ss_pred ---CCccC-Cc-chHHHHHHHHhCCCCCCCCHHHHHHHHc-------Cccc-----C-----------CCCcccc-CCCC
Q 022027 202 ---NVSVK-AS-EDLSYLAKHKIGGDSQKWGLASLTEMLV-------CKEL-----K-----------KPNRIRL-GNWE 252 (304)
Q Consensus 202 ---gi~l~-~~-~Dl~~LA~ylL~~~~~~~sL~~La~~~L-------g~~l-----~-----------K~~~i~~-s~W~ 252 (304)
|+.+. +. +|+ ++++|+|++...+++|+.|+++|| |..+ . |++..+. .+|.
T Consensus 77 ~~~Gi~l~~~~~~DT-mlaayLL~p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~ 155 (698)
T 1x9m_A 77 LNREFHLPRENCIDT-LVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWW 155 (698)
T ss_dssp HCCCCCCCGGGEEEH-HHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGT
T ss_pred ccCCccCCCCcchhH-HHHHHHhCCCCCCCCHHHHHHHHcccchhhhcccccccccCHHHHhCcccccccccccccCCcc
Confidence 98887 54 798 899999998666899999999998 5433 1 2211111 2676
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 022027 253 ADVLSKDQLLYAATDAFASWHLYQVLKSLPE 283 (304)
Q Consensus 253 ~~pLt~~Qi~YAA~DA~a~~~L~~~L~~l~~ 283 (304)
. +++++.+||+.||.+++.||..|...-.
T Consensus 156 ~--~~~~~~~YA~~Da~~t~~L~~~L~~~L~ 184 (698)
T 1x9m_A 156 N--FNEEMMDYNVQDVVVTKALLEKLLSDKH 184 (698)
T ss_dssp S--CCHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred c--cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 6688999999999999999999987443
No 10
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=98.90 E-value=1.9e-09 Score=107.00 Aligned_cols=116 Identities=9% Similarity=-0.091 Sum_probs=93.2
Q ss_pred ceEEEEeeeecCccCCCCCCcEEEEEEEecCCeEEEEecCCCCCcHHHHHhHcCCCceEEEecchHHHHHHHHhcCCccC
Q 022027 127 VVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHSGIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVK 206 (304)
Q Consensus 127 ~~vgfD~E~~~~~~~g~~~~~valiQL~~~~~~~~l~~l~~~~~~~~L~~lL~d~~i~KVG~~ik~Dl~~L~~~~gi~l~ 206 (304)
+.+++|+|...... ...+++++|+|.. +.+|+++ ...+.|++||+| +.||+||+|.|+. .+|+.+.
T Consensus 11 ~~valDtE~~~~~~---~~a~Lvgi~la~~-~~a~~i~----~~l~~l~~~l~d--~~kV~hn~K~Dl~----~~Gi~~~ 76 (540)
T 4dfk_A 11 EGAFVGFVLSRKEP---MWADLLALAAARG-GRVHRAP----EPYKALRDLKEA--RGLLAKDLSVLAL----REGLGLP 76 (540)
T ss_dssp TTCEEEEEESSSCT---TTCCEEEEEEEET-TEEEECS----SHHHHHTTCSSB--CSTTHHHHHHHHH----HTTCCCC
T ss_pred CceEEEEEecCCcc---CcccEEEEEEEcC-CEEEEeh----hhHHHHHHHHcC--CCEEEeccHHHHH----HcCCCCC
Confidence 45899999975421 1357899999976 6777654 356788999998 8899999999998 5788877
Q ss_pred CcchHHHHHHHHhCCCCCCCCHHHHHHHHcCcccCCCCccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 022027 207 ASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKS 280 (304)
Q Consensus 207 ~~~Dl~~LA~ylL~~~~~~~sL~~La~~~Lg~~l~K~~~i~~s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~ 280 (304)
..+|+ ++|+|+|+++ +++|+.|+++|++. +.| +|+.||.++++||..|.+
T Consensus 77 ~~fDT-~laAyLL~p~--~~~L~~La~~yl~~-~gk--------------------~a~~DA~~t~~L~~~L~~ 126 (540)
T 4dfk_A 77 PGDDP-MLLAYLLDPS--NTTPEGVARRYGGE-WTE--------------------EAGERAALSERLFANLWG 126 (540)
T ss_dssp BCCCH-HHHHHHHCTT--CCCHHHHHHHHTSC-CCS--------------------CHHHHHHHHHHHHHHHHH
T ss_pred cceeH-HHHHHHhCCC--CCCHHHHHHHHhhh-hcc--------------------chHHHHHHHHHHHHHHHH
Confidence 55798 9999999976 89999999999875 211 367899999999999975
No 11
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=98.11 E-value=4.4e-06 Score=86.77 Aligned_cols=114 Identities=12% Similarity=0.015 Sum_probs=85.9
Q ss_pred ceEEEEeeeecCccCCCCCCcEEEEEEEecCCeEEEEecCCCCCcHHHHHhHcCCCceEEEecchHHHHHHHHhcCCccC
Q 022027 127 VVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIHSGIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVK 206 (304)
Q Consensus 127 ~~vgfD~E~~~~~~~g~~~~~valiQL~~~~~~~~l~~l~~~~~~~~L~~lL~d~~i~KVG~~ik~Dl~~L~~~~gi~l~ 206 (304)
..++||+|..+ .. ...++ +++|..++.++++++ + .+.|+++|+++.+ |+|+|++.| ..+|+.+.
T Consensus 305 ~~va~d~et~~-~~----~~~l~-vg~a~~~g~a~yvp~-~---~~~Lk~lLed~~i-----n~K~d~~~L-~~~Gi~~~ 368 (832)
T 1bgx_T 305 AFVGFVLSRKE-PM----WADLL-ALAAARGGRVHRAPE-P---YKALRDLKEARGL-----LAKDLSVLA-LREGLGLP 368 (832)
T ss_dssp CCBEEECSSSC-TT----TCCCC-EEECBSSSEEECCSC-H---HHHHHHCSSBCBT-----THHHHHHHH-HHHTCCCC
T ss_pred ceEEEEEecCC-cc----cCcee-EEEEEcCCCEEEEEC-C---HHHHHHHHhCCCC-----ChHHHHHHH-HHcCCccC
Confidence 44788887554 11 12332 448876678888766 3 1579999999987 999999999 56999998
Q ss_pred CcchHHHHHHHHhCCCCCCCCHHHHHHHHcCcccCCCCccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 022027 207 ASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKS 280 (304)
Q Consensus 207 ~~~Dl~~LA~ylL~~~~~~~sL~~La~~~Lg~~l~K~~~i~~s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~ 280 (304)
..+|+ ++|+|+|++. .++|+.|+++| |. +|. + + || .||.++++||..|.+
T Consensus 369 ~~~Dt-~laayLl~p~--~~~l~~l~~~~-gk-----------~~~-----~-~--ya-~da~~~~~l~~~l~~ 418 (832)
T 1bgx_T 369 PGDDP-MLLAYLLDPS--NTTPEGVARRY-GG-----------EWT-----E-E--AG-ERAALSERLFANLWG 418 (832)
T ss_dssp BCCCH-HHHHHHHCTT--CCSTTHHHHHH-SC-----------CCC-----S-S--HH-HHHHHHHHHHHHHHH
T ss_pred cccCH-HHHHHHcCCC--CCCHHHHHHHh-CC-----------Cch-----H-H--HH-HHHHHHHHHHHHHHH
Confidence 33788 9999999975 88999999999 31 131 1 1 88 699999999999975
No 12
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=97.42 E-value=0.0012 Score=57.86 Aligned_cols=79 Identities=15% Similarity=0.039 Sum_probs=55.3
Q ss_pred CCceEEEecchHHHHHHHH---hcCCccC-----CcchHHHHHHHHhCCCCCCCCHHHHHHHHcCcccCCCCccccCCCC
Q 022027 181 STILKVGVGIGSDAGKVYR---DYNVSVK-----ASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWE 252 (304)
Q Consensus 181 ~~i~KVG~~ik~Dl~~L~~---~~gi~l~-----~~~Dl~~LA~ylL~~~~~~~sL~~La~~~Lg~~l~K~~~i~~s~W~ 252 (304)
+..+.|||+++.|+..|.+ .+|+... ..+|+..++. ++.+ .++|+.|+++| |+....
T Consensus 133 ~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~-~~~p---~~~L~~l~~~~-gi~~~~---------- 197 (235)
T 3v9w_A 133 NRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAG-LALG---QTVLSKACQTA-GMDFDS---------- 197 (235)
T ss_dssp CEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHH-HHHS---CCSHHHHHHHH-TCCCCT----------
T ss_pred CCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHH-HHhC---CCCHHHHHHHc-CCCCCC----------
Confidence 4678999999999999854 3477531 3479966654 4442 36999999987 443321
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 022027 253 ADVLSKDQLLYAATDAFASWHLYQVLKS 280 (304)
Q Consensus 253 ~~pLt~~Qi~YAA~DA~a~~~L~~~L~~ 280 (304)
.+..+|..||.++.+|+..|.+
T Consensus 198 ------~~~H~Al~DA~~ta~l~~~l~~ 219 (235)
T 3v9w_A 198 ------TQAHSALYDTERTAVLFCEIVN 219 (235)
T ss_dssp ------TTTTCHHHHHHHHHHHHHHHHH
T ss_pred ------CCCcChHHHHHHHHHHHHHHHH
Confidence 0124589999999999988864
No 13
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=96.63 E-value=0.051 Score=45.65 Aligned_cols=88 Identities=17% Similarity=0.053 Sum_probs=61.7
Q ss_pred HHHHhHcCCCceEEEecchHHHHHHHH---hcCCcc--CCcchHHHHHHHHhCCCCCCCCHHHHHHHHcCcccCCCCccc
Q 022027 173 SLQLLLEDSTILKVGVGIGSDAGKVYR---DYNVSV--KASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIR 247 (304)
Q Consensus 173 ~L~~lL~d~~i~KVG~~ik~Dl~~L~~---~~gi~l--~~~~Dl~~LA~ylL~~~~~~~sL~~La~~~Lg~~l~K~~~i~ 247 (304)
.|..++.+ .+.|||++..|+..|.+ .+|+.. ...+|+..++..+. +..+++|..|++. +|+....
T Consensus 85 ~~~~~l~~--~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~--~~~~~~L~~l~~~-~gi~~~~----- 154 (186)
T 2p1j_A 85 EFLGFLED--SIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLL--KLRSYSLDSVVEK-LGLGPFR----- 154 (186)
T ss_dssp HHHHHSSS--CEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHT--CCSCCSHHHHHHH-TTCCSTT-----
T ss_pred HHHHHHCC--CEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHh--hcCCCCHHHHHHH-cCCCCCC-----
Confidence 45556654 46799999999998864 356653 23479977776554 3368999999986 4654321
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 022027 248 LGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLPE 283 (304)
Q Consensus 248 ~s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~l~~ 283 (304)
...|..||.++..|+..|.....
T Consensus 155 -------------~H~Al~Da~~t~~l~~~l~~~~~ 177 (186)
T 2p1j_A 155 -------------HHRALDDARVTAQVFLRFVEMMK 177 (186)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHTTCC-
T ss_pred -------------CcCHHHHHHHHHHHHHHHHHHHH
Confidence 13588999999999998876543
No 14
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=96.10 E-value=0.039 Score=46.53 Aligned_cols=90 Identities=22% Similarity=0.160 Sum_probs=56.6
Q ss_pred HHHHHhHcCCCceEEEecchHHHHHHHHhcCCccCCcchHHHHHHH-H--hCCCCCCCCHHHHHHHHcCcccCCCCcccc
Q 022027 172 PSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKASEDLSYLAKH-K--IGGDSQKWGLASLTEMLVCKELKKPNRIRL 248 (304)
Q Consensus 172 ~~L~~lL~d~~i~KVG~~ik~Dl~~L~~~~gi~l~~~~Dl~~LA~y-l--L~~~~~~~sL~~La~~~Lg~~l~K~~~i~~ 248 (304)
+.|..++.+ .+.|||++..|+..|...+. ....+|+..++.. . .-+....++|+.|+++++|..+.... ..
T Consensus 75 ~~~~~~l~~--~~lV~hn~~fD~~~L~~~~~--~~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~--~~ 148 (189)
T 1wlj_A 75 LEILQLLKG--KLVVGHDLKHDFQALKEDMS--GYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSL--LG 148 (189)
T ss_dssp HHHHHHHTT--SEEEESSHHHHHHHTTCCCT--TCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCT--TC
T ss_pred HHHHHHHCC--CEEEECCcHHHHHHHHHhCC--CCceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCC--CC
Confidence 346667764 57899999999999844321 1234687554321 1 11223588999999998887654310 01
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 022027 249 GNWEADVLSKDQLLYAATDAFASWHLYQVLKS 280 (304)
Q Consensus 249 s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~ 280 (304)
..|..||.++..|+..+.+
T Consensus 149 -------------H~Al~Da~ata~l~~~l~~ 167 (189)
T 1wlj_A 149 -------------HSSVEDARATMELYQISQR 167 (189)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHH
T ss_pred -------------cCcHHHHHHHHHHHHHHHH
Confidence 2288999999999988763
No 15
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=95.01 E-value=0.057 Score=47.59 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=69.5
Q ss_pred HHHHhHcC--CCceEEEec-chHHHHHHHH---hcCCcc--CC--cchHHHHHHHHhC-------CCCCCCCHHHHHHHH
Q 022027 173 SLQLLLED--STILKVGVG-IGSDAGKVYR---DYNVSV--KA--SEDLSYLAKHKIG-------GDSQKWGLASLTEML 235 (304)
Q Consensus 173 ~L~~lL~d--~~i~KVG~~-ik~Dl~~L~~---~~gi~l--~~--~~Dl~~LA~ylL~-------~~~~~~sL~~La~~~ 235 (304)
.|..++.+ +..+.|||| +..|+..|.+ .+|+.. .+ ++|+..++..+.. +...+++|+.|++++
T Consensus 107 ~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~~~~ 186 (242)
T 3mxm_B 107 LLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRL 186 (242)
T ss_dssp HHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC------CCCSHHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCccccCCCCCcCHHHHHHHH
Confidence 45556765 225779999 4999998865 357654 23 3798777764331 123689999999998
Q ss_pred cCcccCCCCccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhcCCccccc
Q 022027 236 VCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLPEPVKDATDQGNQRCSRL 299 (304)
Q Consensus 236 Lg~~l~K~~~i~~s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~l~~~~~~~~~~~~~~~~~~ 299 (304)
+|+..... +-|..||.++..|+.. +...+....|+.++-++.+
T Consensus 187 ~gi~~~~~------------------H~Al~Da~ata~l~~~---~~~~~~~~~~~~~~~~~~~ 229 (242)
T 3mxm_B 187 YWQAPTDS------------------HTAEGDDLTLLSICQW---KPQALLQWVDEHARPFSTV 229 (242)
T ss_dssp HSSCCSST------------------TSHHHHHHHHHHHHTS---SHHHHHHHHHHHCEEGGGC
T ss_pred hCCCCCCC------------------cChHHHHHHHHHHHHH---HHHHHHHHHHhcCCchhhc
Confidence 88765321 1288999999887664 4455556666666665553
No 16
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=94.20 E-value=0.15 Score=44.25 Aligned_cols=90 Identities=16% Similarity=0.025 Sum_probs=60.7
Q ss_pred HHHHHhHcCC--CceEEEecc-hHHHHHHHH---hcCCccC---CcchHHHHHHHHhC--------CCCCCCCHHHHHHH
Q 022027 172 PSLQLLLEDS--TILKVGVGI-GSDAGKVYR---DYNVSVK---ASEDLSYLAKHKIG--------GDSQKWGLASLTEM 234 (304)
Q Consensus 172 ~~L~~lL~d~--~i~KVG~~i-k~Dl~~L~~---~~gi~l~---~~~Dl~~LA~ylL~--------~~~~~~sL~~La~~ 234 (304)
+.|..+|..- ..+.||||. ..|...|.+ .+|+... ..+|+..++..+.. +...+++|..++++
T Consensus 101 ~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~~l~~~ 180 (238)
T 1y97_A 101 RTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHR 180 (238)
T ss_dssp HHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC----------CCSHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCCCCCCCCHHHHHHH
Confidence 3466777752 257799999 999988864 3576653 24798777766541 23358999999998
Q ss_pred HcCcccCCCCccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022027 235 LVCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLK 279 (304)
Q Consensus 235 ~Lg~~l~K~~~i~~s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~ 279 (304)
++|+.... .+.|..||.++..|+..+.
T Consensus 181 ~~gi~~~~------------------~H~Al~Da~~ta~l~~~l~ 207 (238)
T 1y97_A 181 YFRAEPSA------------------AHSAEGDVHTLLLIFLHRA 207 (238)
T ss_dssp HHSSCCC---------------------CHHHHHHHHHHHHHHTH
T ss_pred HhCCCCcc------------------CccHHHHHHHHHHHHHHHH
Confidence 77764321 1348899999999888764
No 17
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=94.01 E-value=0.17 Score=46.47 Aligned_cols=105 Identities=12% Similarity=0.021 Sum_probs=66.4
Q ss_pred HHHHhHcC--CCceEEEec-chHHHHHHHH---hcCCccC--C--cchHHHHHHHHhC---CC----CCCCCHHHHHHHH
Q 022027 173 SLQLLLED--STILKVGVG-IGSDAGKVYR---DYNVSVK--A--SEDLSYLAKHKIG---GD----SQKWGLASLTEML 235 (304)
Q Consensus 173 ~L~~lL~d--~~i~KVG~~-ik~Dl~~L~~---~~gi~l~--~--~~Dl~~LA~ylL~---~~----~~~~sL~~La~~~ 235 (304)
.|..++.+ +..+.|||| +..|...|.+ .+|+... + ++|+..++..+.. +. ..+++|+.|+++|
T Consensus 107 ~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~~l 186 (314)
T 3u3y_B 107 LLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRL 186 (314)
T ss_dssp HHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC-------CCCCSHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCccccccCCCCCHHHHHHHh
Confidence 45567766 225789999 8999998865 3576542 2 3687555542221 11 2589999999998
Q ss_pred cCcccCCCCccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhcCCcccc
Q 022027 236 VCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLPEPVKDATDQGNQRCSR 298 (304)
Q Consensus 236 Lg~~l~K~~~i~~s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~l~~~~~~~~~~~~~~~~~ 298 (304)
+|+..... +-|..||.++..|+..+. ..+-+..|+.++.++.
T Consensus 187 ~gi~~~~a------------------HrAl~DA~ata~lf~~l~---~~~l~~~~~~~~p~~~ 228 (314)
T 3u3y_B 187 YWQAPTDS------------------HTAEGHVLTLLSICQWKP---QALLQWVDEHARPFST 228 (314)
T ss_dssp HSSCCSCS------------------SSHHHHHHHHHHHHHSSH---HHHHHHHHHHCEEGGG
T ss_pred cCCCCCCC------------------CCHHHHHHHHHHHHHHHH---HHHHHHHhhcCCCHHH
Confidence 88765321 118899999988887543 3333444555554443
No 18
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=93.10 E-value=0.74 Score=38.41 Aligned_cols=88 Identities=15% Similarity=-0.014 Sum_probs=59.2
Q ss_pred HHHHhHcCCCceEEEecchHHHHHHHH---hcCCc---c---CCcchHHHHHHHHhCCCCCCCCHHHHHHHHcCcccCCC
Q 022027 173 SLQLLLEDSTILKVGVGIGSDAGKVYR---DYNVS---V---KASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKP 243 (304)
Q Consensus 173 ~L~~lL~d~~i~KVG~~ik~Dl~~L~~---~~gi~---l---~~~~Dl~~LA~ylL~~~~~~~sL~~La~~~Lg~~l~K~ 243 (304)
.|..++.+ -+.|||++..|+..|.+ .+|+. + ...+|+..++..+. +. ..++|..|+++ +|......
T Consensus 88 ~~~~~l~~--~~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~-p~-~~~~L~~l~~~-~gi~~~~~ 162 (194)
T 2gui_A 88 EFMDYIRG--AELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMF-PG-KRNSLDALCAR-YEIDNSKR 162 (194)
T ss_dssp HHHHHHTT--SEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHS-TT-SCCSHHHHHHH-TTCCCTTC
T ss_pred HHHHHHCC--CeEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHc-CC-CCCCHHHHHHH-cCcCCCCC
Confidence 45567764 35689999999998864 35665 2 23479877776544 33 46799999987 46543210
Q ss_pred CccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC
Q 022027 244 NRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSL 281 (304)
Q Consensus 244 ~~i~~s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~l 281 (304)
. . .-|..||.++..|+..|..-
T Consensus 163 ~---~-------------H~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 163 T---L-------------HGALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp S---S-------------CCHHHHHHHHHHHHHHHTC-
T ss_pred C---C-------------CChHHHHHHHHHHHHHHHhc
Confidence 0 1 12889999999999888753
No 19
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=92.01 E-value=0.78 Score=38.50 Aligned_cols=93 Identities=6% Similarity=-0.168 Sum_probs=62.0
Q ss_pred HHHHhHcCCC-----ceEEEecchHHHH-HHHH---hcCCccC----CcchHHHHHHHHhCCCCCCCCHHHHHHHHcCcc
Q 022027 173 SLQLLLEDST-----ILKVGVGIGSDAG-KVYR---DYNVSVK----ASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKE 239 (304)
Q Consensus 173 ~L~~lL~d~~-----i~KVG~~ik~Dl~-~L~~---~~gi~l~----~~~Dl~~LA~ylL~~~~~~~sL~~La~~~Lg~~ 239 (304)
.|..++.+.. ...|||+...|+. .|.+ .+|+... ..+|+..++...++.+...++|+.|++++ |+.
T Consensus 91 ~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~~-gi~ 169 (204)
T 1w0h_A 91 KVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKL-GMD 169 (204)
T ss_dssp HHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHT-TCC
T ss_pred HHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHHHHc-CCC
Confidence 3555666532 3579999999996 7754 3566543 35799888776565323468999999874 654
Q ss_pred cCCCCccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 022027 240 LKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLPE 283 (304)
Q Consensus 240 l~K~~~i~~s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~l~~ 283 (304)
... +. .-|..||.++..|+..|.....
T Consensus 170 ~~~----~~-------------H~Al~Da~~ta~l~~~l~~~~~ 196 (204)
T 1w0h_A 170 YDG----RP-------------HCGLDDSKNIARIAVRMLQDGC 196 (204)
T ss_dssp CCS----CT-------------TCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCC----Cc-------------cCcHHHHHHHHHHHHHHHHCCC
Confidence 321 01 1288999999999988876443
No 20
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=91.49 E-value=0.45 Score=40.91 Aligned_cols=77 Identities=19% Similarity=0.085 Sum_probs=52.7
Q ss_pred CceEEEecchHHHHHHHH---hcCCcc-----CCcchHHHHHHHHhCCCCCCCCHHHHHHHHcCcccCCCCccccCCCCC
Q 022027 182 TILKVGVGIGSDAGKVYR---DYNVSV-----KASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKPNRIRLGNWEA 253 (304)
Q Consensus 182 ~i~KVG~~ik~Dl~~L~~---~~gi~l-----~~~~Dl~~LA~ylL~~~~~~~sL~~La~~~Lg~~l~K~~~i~~s~W~~ 253 (304)
..+.|||++..|+..|.+ .+|+.. ...+|+..++..+++ .++|..|++++ |+...... .
T Consensus 126 ~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~----~~~L~~l~~~~-gi~~~~~~---~----- 192 (224)
T 2f96_A 126 RAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG----QTVLAKACQAA-GMEFDNRE---A----- 192 (224)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS----CCSHHHHHHHT-TCCCCTTS---C-----
T ss_pred CCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC----CCCHHHHHHHc-CCCcCCCC---C-----
Confidence 456899999999988864 356641 234799777766553 35899999874 76542110 1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022027 254 DVLSKDQLLYAATDAFASWHLYQVLK 279 (304)
Q Consensus 254 ~pLt~~Qi~YAA~DA~a~~~L~~~L~ 279 (304)
..|..||.++..|+..|.
T Consensus 193 --------H~Al~Da~~ta~l~~~l~ 210 (224)
T 2f96_A 193 --------HSARYDTEKTAELFCGIV 210 (224)
T ss_dssp --------CCHHHHHHHHHHHHHHHH
T ss_pred --------CChHHHHHHHHHHHHHHH
Confidence 227889999988887664
No 21
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=90.02 E-value=2.2 Score=43.70 Aligned_cols=152 Identities=13% Similarity=0.107 Sum_probs=83.4
Q ss_pred CceEEEEeeeecCccCCCCCCcEEEEEEEecCCeEEEEecCC----------C--CCcHHHHHhHc--CCCceEEEecch
Q 022027 126 QVVVGFDIEWKPTFRKGVLPRKAAVMQICGDSNHCYVMQIIH----------S--GIPPSLQLLLE--DSTILKVGVGIG 191 (304)
Q Consensus 126 ~~~vgfD~E~~~~~~~g~~~~~valiQL~~~~~~~~l~~l~~----------~--~~~~~L~~lL~--d~~i~KVG~~ik 191 (304)
-..+.||+|..+....+....++..|.++...+. .++.... . ++...+..++. ||. +.+|||+.
T Consensus 135 l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~~~~-~~~t~~~i~~~~v~~~~~E~~LL~~f~~~i~~~dPD-iivGyN~~ 212 (775)
T 1qht_A 135 LTMLAFAIATLYHEGEEFGTGPILMISYADGSEA-RVITWKKIDLPYVDVVSTEKEMIKRFLRVVREKDPD-VLITYNGD 212 (775)
T ss_dssp CCEEEEEEEECCCTTCCTTCSCEEEEEEECSSCE-EEEESSCCCCSSEEECSCHHHHHHHHHHHHHHHCCS-EEEESSTT
T ss_pred cEEEEEEEEEcCCCCCCCCCCcEEEEEEEecCCC-eeEeeccccccceEEcCCHHHHHHHHHHHHHhcCCC-EEEEeCCC
Confidence 4689999999752111111123433333333222 2222110 0 12334444443 465 46899976
Q ss_pred -HHHHHHHHh---cCCcc----------------------CCc--chHHHHHHHHhCCCCCCCCHHHHHHHHcCcccCCC
Q 022027 192 -SDAGKVYRD---YNVSV----------------------KAS--EDLSYLAKHKIGGDSQKWGLASLTEMLVCKELKKP 243 (304)
Q Consensus 192 -~Dl~~L~~~---~gi~l----------------------~~~--~Dl~~LA~ylL~~~~~~~sL~~La~~~Lg~~l~K~ 243 (304)
.|+..|..+ +|+.+ .|. +|+-.++...+. ..+++|+.+++++||......
T Consensus 213 ~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~--l~sysL~~Va~~~Lg~~K~dv 290 (775)
T 1qht_A 213 NFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTIN--LPTYTLEAVYEAVFGKPKEKV 290 (775)
T ss_dssp TTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSC--CSCCCHHHHHHHHHCCCCCCC
T ss_pred CccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhcC--cCcCCHHHHHHHHhCCCCCcc
Confidence 688776543 45542 222 588666655433 357999999999999743211
Q ss_pred C-ccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC
Q 022027 244 N-RIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSL 281 (304)
Q Consensus 244 ~-~i~~s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~l 281 (304)
. +.-..-|...+--..-++|...||..++.|+..+..+
T Consensus 291 ~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~~~ 329 (775)
T 1qht_A 291 YAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFFPM 329 (775)
T ss_dssp CHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 0 0011124433311456799999999999998776543
No 22
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=87.71 E-value=2.2 Score=38.39 Aligned_cols=92 Identities=7% Similarity=-0.143 Sum_probs=60.7
Q ss_pred HHHHhHcCC-----CceEEEecchHHHH-HHHHh---cCCccC----CcchHHHHHHHHhCCCCCCCCHHHHHHHHcCcc
Q 022027 173 SLQLLLEDS-----TILKVGVGIGSDAG-KVYRD---YNVSVK----ASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKE 239 (304)
Q Consensus 173 ~L~~lL~d~-----~i~KVG~~ik~Dl~-~L~~~---~gi~l~----~~~Dl~~LA~ylL~~~~~~~sL~~La~~~Lg~~ 239 (304)
.|..++.+. ..+.|||+...|+. .|.+. +|+... ..+|+..++....+.....++|..|+++ +|+.
T Consensus 159 ~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~-~gi~ 237 (299)
T 1zbh_A 159 KVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LGMD 237 (299)
T ss_dssp HHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-TTCC
T ss_pred HHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHHHH-cCCC
Confidence 455566653 14679999999998 77543 566543 3479876665444422235899999987 4654
Q ss_pred cCCCCccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 022027 240 LKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLP 282 (304)
Q Consensus 240 l~K~~~i~~s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~l~ 282 (304)
... +. +-|..||.++..|+..|....
T Consensus 238 ~~g----~~-------------H~Al~DA~ata~l~~~l~~~~ 263 (299)
T 1zbh_A 238 YDG----RP-------------NCGLDDSKNIARIAVRMLQDG 263 (299)
T ss_dssp CCS----CT-------------TCHHHHHHHHHHHHHHHHHTT
T ss_pred CCC----CC-------------CChHHHHHHHHHHHHHHHHhC
Confidence 321 01 128899999999999887543
No 23
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=85.80 E-value=3 Score=38.63 Aligned_cols=92 Identities=7% Similarity=-0.156 Sum_probs=60.7
Q ss_pred HHHHhHcCC-----CceEEEecchHHHH-HHHH---hcCCccC----CcchHHHHHHHHhCCCCCCCCHHHHHHHHcCcc
Q 022027 173 SLQLLLEDS-----TILKVGVGIGSDAG-KVYR---DYNVSVK----ASEDLSYLAKHKIGGDSQKWGLASLTEMLVCKE 239 (304)
Q Consensus 173 ~L~~lL~d~-----~i~KVG~~ik~Dl~-~L~~---~~gi~l~----~~~Dl~~LA~ylL~~~~~~~sL~~La~~~Lg~~ 239 (304)
.|..|+.+. ..+.|||+...|+. .|.+ .+|+... ..+|+..++...++.....++|..|+++ +|+.
T Consensus 209 ~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~-~gi~ 287 (349)
T 1zbu_A 209 KVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LGMD 287 (349)
T ss_dssp HHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHHH-TTCC
T ss_pred HHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHHHH-cCCC
Confidence 455567653 14679999999998 7754 3566543 3479877665544422235899999987 4654
Q ss_pred cCCCCccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 022027 240 LKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLP 282 (304)
Q Consensus 240 l~K~~~i~~s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~l~ 282 (304)
... .. +-|..||.++..|+..|....
T Consensus 288 ~~g----~~-------------HrAl~DA~ata~ll~~ll~~~ 313 (349)
T 1zbu_A 288 YDG----RP-------------HCGLDDSKNIARIAVRMLQDG 313 (349)
T ss_dssp CCS----CT-------------TCHHHHHHHHHHHHHHHHHTT
T ss_pred CCC----CC-------------CCHHHHHHHHHHHHHHHHHhc
Confidence 321 01 128899999999998877543
No 24
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=83.60 E-value=0.4 Score=50.58 Aligned_cols=98 Identities=21% Similarity=0.223 Sum_probs=61.7
Q ss_pred ceEEEecchHHHHHHHHhcCCccCC--cchHHHHHHHH----------h--------------------------CC---
Q 022027 183 ILKVGVGIGSDAGKVYRDYNVSVKA--SEDLSYLAKHK----------I--------------------------GG--- 221 (304)
Q Consensus 183 i~KVG~~ik~Dl~~L~~~~gi~l~~--~~Dl~~LA~yl----------L--------------------------~~--- 221 (304)
-+.||||+.+|-..+...|.+.-.+ ++|++-|.--+ + ++
T Consensus 195 rlIVGHNVsyDRARI~EeY~l~~sk~rFlDTMSLHvavsG~~s~QR~~w~~~kk~k~~~~~e~~~~~~~~~~~~~~p~~~ 274 (1172)
T 3ikm_A 195 QLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAIS 274 (1172)
T ss_dssp CCCBCBCSSSSTTGGGTSSCSSCCCCCCCBTTHHHHHHSCCCHHHHHHHHHHHHC-------------------------
T ss_pred cEEEeCCcchhHHHHHHHHhcccCCceeeechhhhhhccccchhhHHHHHHhhhhcccchhhHHHHhhhccccccCcccc
Confidence 3559999999998888889886543 35875443211 0 00
Q ss_pred --C----CCCC--CHHHHHHHHcCc-ccCCCCccccCCCCCCCCCH---HHHHHHHHHHHHHHHHHHHHhC
Q 022027 222 --D----SQKW--GLASLTEMLVCK-ELKKPNRIRLGNWEADVLSK---DQLLYAATDAFASWHLYQVLKS 280 (304)
Q Consensus 222 --~----~~~~--sL~~La~~~Lg~-~l~K~~~i~~s~W~~~pLt~---~Qi~YAA~DA~a~~~L~~~L~~ 280 (304)
. ...- ||.++++.++|. .++|.....+.......+.. +-+.|+|.|+.+++++|.+|-+
T Consensus 275 ~~~W~~~sS~N~~SL~dV~~lhcg~~~ldK~~Rd~Fv~~~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~P 345 (1172)
T 3ikm_A 275 SWDWLDISSVNSNSLAEVHRLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLP 345 (1172)
T ss_dssp -CCCCCCCCTTSHHHHHHHTCSSCSCS--SCSSSSTTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccCCCcCCHHHHHHHhCCCcccChhhHhhhhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 0 0123 788999999997 78775433333222222221 3459999999999999988754
No 25
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=81.84 E-value=3.3 Score=40.09 Aligned_cols=88 Identities=15% Similarity=0.094 Sum_probs=55.4
Q ss_pred HHHhHcCCCceEEEec-chHHHHHHHH---hcCCcc--------CCcchHHHHHHHHh--CC----------CCCCCCHH
Q 022027 174 LQLLLEDSTILKVGVG-IGSDAGKVYR---DYNVSV--------KASEDLSYLAKHKI--GG----------DSQKWGLA 229 (304)
Q Consensus 174 L~~lL~d~~i~KVG~~-ik~Dl~~L~~---~~gi~l--------~~~~Dl~~LA~ylL--~~----------~~~~~sL~ 229 (304)
+..++..+..+.|||| +..|...|.+ .+|+.. ...+|+..++.... .+ +..+++|+
T Consensus 88 f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL~ 167 (482)
T 2qxf_A 88 IHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLE 167 (482)
T ss_dssp HHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHH
T ss_pred HHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCHH
Confidence 5556764567789999 8999988854 344431 22357766665432 11 23478999
Q ss_pred HHHHHHcCcccCCCCccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 022027 230 SLTEMLVCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKS 280 (304)
Q Consensus 230 ~La~~~Lg~~l~K~~~i~~s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~ 280 (304)
.|++.+ |+.... ..-|..||.++..|+..|..
T Consensus 168 ~L~~~~-Gi~~~~------------------aHrAL~DA~aTa~l~~~l~~ 199 (482)
T 2qxf_A 168 HLTKAN-GIEHSN------------------AHDAMADVYATIAMAKLVKT 199 (482)
T ss_dssp HHHHHT-TCCCC---------------------CTTHHHHHHHHHHHHHHH
T ss_pred HHHHHc-CCCCCC------------------CCCHHHHHHHHHHHHHHHHH
Confidence 998765 654311 12267889998888877753
No 26
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=70.88 E-value=71 Score=32.92 Aligned_cols=99 Identities=15% Similarity=0.103 Sum_probs=60.6
Q ss_pred CcHHHHHhHcCCCceEEEecch-HHHHHHHHh---cCCc-------c--------CCc--chHHHHHH------HHhCCC
Q 022027 170 IPPSLQLLLEDSTILKVGVGIG-SDAGKVYRD---YNVS-------V--------KAS--EDLSYLAK------HKIGGD 222 (304)
Q Consensus 170 ~~~~L~~lL~d~~i~KVG~~ik-~Dl~~L~~~---~gi~-------l--------~~~--~Dl~~LA~------ylL~~~ 222 (304)
++..+..++.+.. +.+|||+. .|+-.|..+ +|+. + .+. +|+..+.. |..+..
T Consensus 260 LL~~f~~~i~~~d-iivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~k 338 (847)
T 1s5j_A 260 LLGRFFDILLEYP-IVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGK 338 (847)
T ss_dssp HHHHHHHHHTTCS-EEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTTC
T ss_pred HHHHHHHHhccCC-EEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhccccc
Confidence 3455666777775 68999976 688877643 4553 1 122 46643322 222222
Q ss_pred CCCCCHHHHHHHHcCcccCCCCccccCCCCCCCCC-HHHHHHHHHHHHHHHHHH
Q 022027 223 SQKWGLASLTEMLVCKELKKPNRIRLGNWEADVLS-KDQLLYAATDAFASWHLY 275 (304)
Q Consensus 223 ~~~~sL~~La~~~Lg~~l~K~~~i~~s~W~~~pLt-~~Qi~YAA~DA~a~~~L~ 275 (304)
..+++|+.+++.+||..-. .+ ...|. ... ..-++|.-.||..++.|+
T Consensus 339 l~sysL~~Va~~~Lg~~K~---dv-~~~i~--~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 339 YNEYNLDAVAKALLGTSKV---KV-DTLIS--FLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp CSSCSHHHHHHHHHCCCCC------SSCTT--TCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHhCCCCc---ch-hHhhh--hccHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999986321 11 12232 223 345799999999999884
No 27
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=57.81 E-value=8.3 Score=34.79 Aligned_cols=90 Identities=10% Similarity=-0.006 Sum_probs=54.5
Q ss_pred HHHHhHcCCCceEEEecc------hHHH-HHHH---HhcCCccC----CcchHHHHHHHHhCCCC-----CCCCHHHHHH
Q 022027 173 SLQLLLEDSTILKVGVGI------GSDA-GKVY---RDYNVSVK----ASEDLSYLAKHKIGGDS-----QKWGLASLTE 233 (304)
Q Consensus 173 ~L~~lL~d~~i~KVG~~i------k~Dl-~~L~---~~~gi~l~----~~~Dl~~LA~ylL~~~~-----~~~sL~~La~ 233 (304)
.|..++.+..+ |||++ ..|+ ..|. +.+|+... ..+|+..++..+++... .+++|..|++
T Consensus 101 ~f~~~l~~~~l--vahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l~~ 178 (308)
T 3cg7_A 101 QFQQWLITLGL--EEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNE 178 (308)
T ss_dssp HHHHHHHHHCC--CTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHHHH
T ss_pred HHHHHHHhCCc--CCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHHHHHH
Confidence 34456665322 45555 8888 4554 34677654 34799777765443111 1578999996
Q ss_pred HHcCcccCCCCccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 022027 234 MLVCKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLP 282 (304)
Q Consensus 234 ~~Lg~~l~K~~~i~~s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~l~ 282 (304)
+ +|+..... . +-|..||.++..|+..|....
T Consensus 179 ~-~gi~~~~~----~-------------HrAl~DA~ata~l~~~l~~~~ 209 (308)
T 3cg7_A 179 Y-YDLPTIGR----A-------------HDAMDDCLNIATILQRMINMG 209 (308)
T ss_dssp H-TTCCCCSC----T-------------TCHHHHHHHHHHHHHHHHHTT
T ss_pred H-cCCCCCCC----C-------------cCHHHHHHHHHHHHHHHHHcC
Confidence 5 46543211 0 128889999999998887543
No 28
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=48.52 E-value=34 Score=28.87 Aligned_cols=89 Identities=11% Similarity=0.024 Sum_probs=52.5
Q ss_pred HHHHhHcCCCceEEEecc--------hHHHHH-HH---HhcCCccC----CcchHHHHHHHHhCCCCCCCCHHHHHHHHc
Q 022027 173 SLQLLLEDSTILKVGVGI--------GSDAGK-VY---RDYNVSVK----ASEDLSYLAKHKIGGDSQKWGLASLTEMLV 236 (304)
Q Consensus 173 ~L~~lL~d~~i~KVG~~i--------k~Dl~~-L~---~~~gi~l~----~~~Dl~~LA~ylL~~~~~~~sL~~La~~~L 236 (304)
.+..++.+.. .|||+. ..|+.. |. +.+|+... ..+|+........+. ...++|..|++. +
T Consensus 110 ~f~~~l~~~~--lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~-~p~~~L~~l~~~-~ 185 (224)
T 2xri_A 110 RVDEWMAKEG--LLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGC-WPKNGLLDMNKG-L 185 (224)
T ss_dssp HHHHHHHHTT--TTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTS-CCTTTHHHHHHH-T
T ss_pred HHHHHHhhcc--cccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhcc-CCCCCHHHHHHH-c
Confidence 3555666542 357777 889885 53 24576543 346864333221121 124899999985 4
Q ss_pred CcccCCCCccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 022027 237 CKELKKPNRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLP 282 (304)
Q Consensus 237 g~~l~K~~~i~~s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~l~ 282 (304)
|..... +. .-|..||.++..|+..|....
T Consensus 186 gi~~~~----~~-------------H~Al~DA~~ta~l~~~l~~~g 214 (224)
T 2xri_A 186 SLQHIG----RP-------------HSGIDDCKNIANIMKTLAYRG 214 (224)
T ss_dssp TCCCCS----CT-------------TCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCC----CC-------------cChHHHHHHHHHHHHHHHHcC
Confidence 654311 01 128899999999999887543
No 29
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=48.13 E-value=40 Score=31.88 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=59.2
Q ss_pred CCcHHHHHhHcCCCceEEEecchHHHHHHHHhcCCc---------------cCCcchHHHHHHHH-hCCCCCCCCHHHHH
Q 022027 169 GIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVS---------------VKASEDLSYLAKHK-IGGDSQKWGLASLT 232 (304)
Q Consensus 169 ~~~~~L~~lL~d~~i~KVG~~ik~Dl~~L~~~~gi~---------------l~~~~Dl~~LA~yl-L~~~~~~~sL~~La 232 (304)
++...+..+....+ ..||||+-.|+..+++.|--. ...++||..+|... +.......+|..|.
T Consensus 269 Gfr~V~~~L~~s~K-piVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~sL~~l~ 347 (430)
T 2a1r_A 269 GFSRVIHAIANSGK-LVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELE 347 (430)
T ss_dssp BTHHHHHHHHHHCC-EEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHTSTTTTTTCSCCSHHHHH
T ss_pred hHHHHHHHHHhCCC-ceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCceeehHHhhhccchhhccCCCCHHHHH
Confidence 34445555555554 459999999999888765322 23567997666431 11112356899988
Q ss_pred HHHcCcccCCCCccccCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 022027 233 EMLVCKELKKPNRIRLGN-WEADVLSKDQLLYAATDAFASWHLYQVLKS 280 (304)
Q Consensus 233 ~~~Lg~~l~K~~~i~~s~-W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~ 280 (304)
+.+-.... ....+.... .....-..++.+-|+-|||.+-.++-.|..
T Consensus 348 ~~l~~~~~-~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~ 395 (430)
T 2a1r_A 348 KRLKETPF-NPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMAN 395 (430)
T ss_dssp HHTTSTTC-CCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCC-CCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHH
Confidence 77643211 111222111 000001122334478899888777776664
No 30
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=37.78 E-value=90 Score=25.45 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=19.4
Q ss_pred HHHHhHcCCC----ceEEEecchHHHHHHHHh
Q 022027 173 SLQLLLEDST----ILKVGVGIGSDAGKVYRD 200 (304)
Q Consensus 173 ~L~~lL~d~~----i~KVG~~ik~Dl~~L~~~ 200 (304)
.|..++.+.- ...|||++..|...|.+.
T Consensus 91 ~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~ 122 (194)
T 2gbz_A 91 QTVAFLGEWIRAGASPMCGNSICQDRRFLHRQ 122 (194)
T ss_dssp HHHHHHTTTCCTTSSCEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCceEEecCHHHhHHHHHHH
Confidence 3455665531 347999999999998654
No 31
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=32.15 E-value=50 Score=31.86 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=57.0
Q ss_pred HHHHhHcCCCceEEEecchHHHHHHHHhcCCc---------------cCCcchHHHHHHHH-hCCCCCCCCHHHHHHHHc
Q 022027 173 SLQLLLEDSTILKVGVGIGSDAGKVYRDYNVS---------------VKASEDLSYLAKHK-IGGDSQKWGLASLTEMLV 236 (304)
Q Consensus 173 ~L~~lL~d~~i~KVG~~ik~Dl~~L~~~~gi~---------------l~~~~Dl~~LA~yl-L~~~~~~~sL~~La~~~L 236 (304)
.+..+. ..+...|||++-.|+..|++.|--. ...++|+..++... +..-...-+|..|.+.+-
T Consensus 268 v~~~L~-~~~kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~~L~~l~~~l~ 346 (507)
T 3d45_A 268 VIHAIA-NSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLK 346 (507)
T ss_dssp HHHHHH-HHCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHHHHHHTT
T ss_pred HHHHHH-hCCCeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccccCCCCHHHHHHHHh
Confidence 343344 4467789999999999988765322 23457986665420 000012568999988764
Q ss_pred CcccCCCCcccc----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 022027 237 CKELKKPNRIRL----GNWEADVLSKDQLLYAATDAFASWHLYQVLKS 280 (304)
Q Consensus 237 g~~l~K~~~i~~----s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~ 280 (304)
.... ....+.. ..+.. ...+.+-|+-||+.+-.++-.|..
T Consensus 347 ~~~~-~~p~i~~~~~~~~y~~---~~~~~HeAGyDA~mTg~~F~kl~~ 390 (507)
T 3d45_A 347 ETPF-DPPKVESAEGFPSYDT---ASEQLHEAGYDAYITGLCFISMAN 390 (507)
T ss_dssp STTC-CCCCEEECTTSCCCC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCC-CCCeEEeccccccccc---CCCCcccHHHHHHHHHHHHHHHHH
Confidence 2211 1112211 11111 111224488899999888887764
No 32
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=25.00 E-value=78 Score=29.15 Aligned_cols=70 Identities=14% Similarity=0.024 Sum_probs=43.0
Q ss_pred chHHHHHHHH-hCCCCCCCCHHHHHHHHcCcccCCC-CccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 022027 209 EDLSYLAKHK-IGGDSQKWGLASLTEMLVCKELKKP-NRIRLGNWEADVLSKDQLLYAATDAFASWHLYQVLKSLP 282 (304)
Q Consensus 209 ~Dl~~LA~yl-L~~~~~~~sL~~La~~~Lg~~l~K~-~~i~~s~W~~~pLt~~Qi~YAA~DA~a~~~L~~~L~~l~ 282 (304)
+|+-.++... .. +..+++|+.+++++||..-... +.+. .-|.. -...-++|...||..++.|+.++.-++
T Consensus 268 lD~~~~~k~~~~~-~l~sysL~~Va~~~Lg~~K~d~~~~i~-~~~~~--~~~~l~~Y~~~D~~l~~~L~~kl~~l~ 339 (388)
T 1noy_A 268 LDYLDLYKKFAFT-NLPSFSLESVAQHETKKGKLPYDGPIN-KLRET--NHQRYISYNIIDVESVQAIDKIRGFID 339 (388)
T ss_dssp CCHHHHHHHHTCC-CCSCCSHHHHHHHHHSCCCCCCSSCGG-GHHHH--HHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred eEHHHHHhhcCcC-cccCCCHHHHHHHHhCCCCCCcHHHHH-HHHHh--CHHHHHHHHHHHHHHHHHHHHHHChHH
Confidence 5876665542 22 1468999999999998632111 1111 11320 012356999999999999999864443
Done!