Query 022028
Match_columns 304
No_of_seqs 149 out of 1873
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 07:28:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15493 5-methylthioadenosine 100.0 8.9E-45 1.9E-49 332.3 27.8 270 20-302 2-285 (435)
2 TIGR03314 Se_ssnA putative sel 100.0 1.5E-44 3.2E-49 331.4 26.9 271 21-302 1-292 (441)
3 PRK06687 chlorohydrolase; Vali 100.0 2.3E-43 5.1E-48 322.5 26.4 269 21-302 2-284 (419)
4 PRK07203 putative chlorohydrol 100.0 4.9E-43 1.1E-47 322.2 27.8 271 21-302 2-293 (442)
5 PRK09045 N-ethylammeline chlor 100.0 1E-40 2.3E-45 306.8 28.3 273 17-301 5-289 (443)
6 PRK12393 amidohydrolase; Provi 100.0 1.4E-40 3E-45 306.5 28.8 277 18-302 1-306 (457)
7 cd01303 GDEase Guanine deamina 100.0 1.3E-40 2.7E-45 304.6 25.1 270 28-302 14-299 (429)
8 PRK09228 guanine deaminase; Pr 100.0 2.8E-40 6.2E-45 302.2 26.3 277 19-302 2-302 (433)
9 PRK08203 hydroxydechloroatrazi 100.0 6.1E-40 1.3E-44 302.5 27.9 274 21-301 4-301 (451)
10 PRK07228 N-ethylammeline chlor 100.0 1.7E-39 3.7E-44 299.3 28.1 273 21-302 3-287 (445)
11 PRK06380 metal-dependent hydro 100.0 2.5E-39 5.4E-44 295.9 26.5 260 21-301 3-273 (418)
12 PRK06038 N-ethylammeline chlor 100.0 5.7E-39 1.2E-43 293.9 28.3 266 19-302 2-278 (430)
13 PRK08418 chlorohydrolase; Prov 100.0 2.7E-39 5.9E-44 293.4 25.0 266 21-302 2-292 (408)
14 COG0402 SsnA Cytosine deaminas 100.0 2.7E-39 5.8E-44 295.4 25.1 270 19-302 2-286 (421)
15 PRK08393 N-ethylammeline chlor 100.0 9.9E-39 2.2E-43 292.0 27.6 265 20-302 2-277 (424)
16 TIGR02967 guan_deamin guanine 100.0 5.4E-38 1.2E-42 285.8 26.1 260 36-302 2-277 (401)
17 cd01313 Met_dep_hydrolase_E Me 100.0 5.3E-38 1.1E-42 286.4 22.2 252 36-302 6-294 (418)
18 cd01312 Met_dep_hydrolase_D Me 100.0 6.5E-38 1.4E-42 281.8 22.3 240 48-302 1-269 (381)
19 PRK06151 N-ethylammeline chlor 100.0 6.9E-37 1.5E-41 284.1 27.7 273 20-302 2-318 (488)
20 TIGR02022 hutF formiminoglutam 100.0 1E-37 2.2E-42 287.1 21.9 265 19-302 2-303 (455)
21 PRK09229 N-formimino-L-glutama 100.0 6.7E-37 1.5E-41 282.3 20.1 265 18-302 2-303 (456)
22 PRK08204 hypothetical protein; 100.0 9E-36 2E-40 275.0 25.9 266 18-302 1-282 (449)
23 cd01298 ATZ_TRZ_like TRZ/ATZ f 100.0 1.9E-35 4.2E-40 270.1 27.3 270 21-301 1-281 (411)
24 KOG3968 Atrazine chlorohydrola 100.0 5.7E-34 1.2E-38 245.4 16.5 269 34-303 21-311 (439)
25 PRK07213 chlorohydrolase; Prov 100.0 1.8E-32 3.9E-37 246.8 24.0 247 21-302 2-265 (375)
26 PRK09230 cytosine deaminase; P 100.0 7.2E-30 1.6E-34 232.9 18.2 246 18-300 3-283 (426)
27 cd01293 Bact_CD Bacterial cyto 100.0 1E-27 2.2E-32 218.2 18.2 249 22-299 1-276 (398)
28 PRK07572 cytosine deaminase; V 100.0 1.4E-26 3E-31 212.0 21.4 247 20-301 3-280 (426)
29 PRK09356 imidazolonepropionase 99.9 1.6E-26 3.5E-31 210.9 18.9 260 17-301 1-295 (406)
30 PRK14085 imidazolonepropionase 99.9 9.4E-26 2E-30 203.9 19.0 253 20-300 2-279 (382)
31 TIGR01224 hutI imidazoloneprop 99.9 7.7E-25 1.7E-29 198.0 16.6 236 39-301 2-270 (377)
32 cd01305 archeal_chlorohydrolas 99.9 2.2E-24 4.7E-29 185.4 11.9 185 77-302 1-202 (263)
33 cd01296 Imidazolone-5PH Imidaz 99.9 7.8E-23 1.7E-27 184.5 16.5 236 43-301 1-266 (371)
34 PRK05985 cytosine deaminase; P 99.9 2.6E-22 5.5E-27 182.2 18.2 236 18-286 1-247 (391)
35 cd01314 D-HYD D-hydantoinases 99.9 3.9E-22 8.4E-27 184.2 16.6 225 21-288 1-244 (447)
36 PRK06846 putative deaminase; V 99.9 1.4E-21 3E-26 178.3 19.3 245 20-290 5-269 (410)
37 PLN02942 dihydropyrimidinase 99.9 7.1E-21 1.5E-25 176.8 21.8 227 18-291 4-253 (486)
38 PRK12394 putative metallo-depe 99.9 2.4E-21 5.3E-26 174.9 17.7 210 18-286 2-220 (379)
39 TIGR02033 D-hydantoinase D-hyd 99.9 2E-21 4.3E-26 180.0 15.9 225 21-290 1-248 (454)
40 TIGR01792 urease_alph urease, 99.9 8.8E-21 1.9E-25 174.5 16.7 189 18-272 65-276 (567)
41 PRK07583 cytosine deaminase-li 99.9 4.9E-20 1.1E-24 169.4 20.9 259 16-301 8-301 (438)
42 PRK08323 phenylhydantoinase; V 99.8 3.5E-20 7.5E-25 171.8 16.1 216 20-285 2-239 (459)
43 PRK10657 isoaspartyl dipeptida 99.8 1.1E-19 2.4E-24 165.0 17.6 211 21-284 3-228 (388)
44 PLN02303 urease 99.8 9E-19 1.9E-23 165.2 20.3 211 7-275 321-549 (837)
45 TIGR01975 isoAsp_dipep isoaspa 99.8 3.3E-18 7.2E-23 153.7 17.0 194 21-255 2-209 (389)
46 COG3964 Predicted amidohydrola 99.8 3.1E-18 6.7E-23 142.1 13.9 214 16-290 1-223 (386)
47 PRK09357 pyrC dihydroorotase; 99.8 2.4E-17 5.2E-22 151.2 18.8 174 21-248 3-184 (423)
48 cd01297 D-aminoacylase D-amino 99.8 9.1E-17 2E-21 146.8 19.6 214 21-287 2-254 (415)
49 PRK13309 ureC urease subunit a 99.7 9.5E-17 2.1E-21 148.2 18.0 193 18-275 67-284 (572)
50 PLN02795 allantoinase 99.7 1.8E-16 3.8E-21 147.7 19.8 186 18-248 43-236 (505)
51 cd01299 Met_dep_hydrolase_A Me 99.7 5.4E-17 1.2E-21 144.9 14.4 188 69-291 2-209 (342)
52 KOG2584 Dihydroorotase and rel 99.7 1.5E-16 3.2E-21 138.0 15.7 193 17-252 12-206 (522)
53 TIGR03178 allantoinase allanto 99.7 1.7E-16 3.7E-21 146.3 16.8 177 20-249 1-186 (443)
54 PRK09237 dihydroorotase; Provi 99.7 4.5E-16 9.7E-21 140.9 18.5 210 21-287 1-216 (380)
55 PRK09061 D-glutamate deacylase 99.7 2.1E-15 4.5E-20 140.7 22.8 213 17-287 17-258 (509)
56 PRK15446 phosphonate metabolis 99.7 4E-16 8.6E-21 140.7 16.9 97 19-145 2-98 (383)
57 cd01308 Isoaspartyl-dipeptidas 99.7 1.1E-15 2.5E-20 138.6 19.8 188 21-251 2-203 (387)
58 cd01315 L-HYD_ALN L-Hydantoina 99.7 1.2E-15 2.7E-20 141.0 19.7 174 20-244 1-183 (447)
59 cd00854 NagA N-acetylglucosami 99.7 1.9E-16 4.1E-21 142.7 13.7 225 21-291 1-255 (374)
60 COG1228 HutI Imidazolonepropio 99.7 2.7E-16 6E-21 141.6 12.8 218 18-247 9-244 (406)
61 TIGR00221 nagA N-acetylglucosa 99.7 1.4E-15 3.1E-20 136.3 16.7 196 19-256 3-208 (380)
62 PRK13404 dihydropyrimidinase; 99.7 1.9E-15 4.2E-20 140.1 18.0 184 17-248 2-190 (477)
63 PRK13985 ureB urease subunit b 99.7 4.4E-15 9.5E-20 135.7 19.5 179 7-249 53-253 (568)
64 PRK13308 ureC urease subunit a 99.7 2.4E-15 5.1E-20 137.9 17.3 176 7-244 54-249 (569)
65 cd00375 Urease_alpha Urease al 99.7 8.5E-15 1.8E-19 134.2 20.6 179 7-249 52-253 (567)
66 PRK13206 ureC urease subunit a 99.7 6E-15 1.3E-19 135.8 19.2 179 7-249 58-259 (573)
67 PRK13207 ureC urease subunit a 99.7 3.9E-15 8.4E-20 137.3 17.9 175 7-244 54-249 (568)
68 PRK06886 hypothetical protein; 99.7 2.9E-15 6.3E-20 131.3 15.4 197 81-301 21-251 (329)
69 PRK11170 nagA N-acetylglucosam 99.6 2.1E-14 4.6E-19 129.1 19.5 197 21-257 2-207 (382)
70 PRK07575 dihydroorotase; Provi 99.6 3.6E-15 7.7E-20 137.1 14.8 95 18-147 2-96 (438)
71 cd01307 Met_dep_hydrolase_B Me 99.6 6.8E-15 1.5E-19 131.1 15.6 192 42-287 1-197 (338)
72 COG1574 Predicted metal-depend 99.6 3.8E-14 8.3E-19 130.9 20.7 72 16-90 2-73 (535)
73 COG1820 NagA N-acetylglucosami 99.6 2.8E-14 6.1E-19 124.4 16.4 195 21-257 2-205 (380)
74 PRK07627 dihydroorotase; Provi 99.6 9.3E-14 2E-18 127.0 20.3 65 20-91 2-66 (425)
75 PRK09236 dihydroorotase; Revie 99.6 4.7E-14 1E-18 130.0 16.8 65 18-91 1-65 (444)
76 TIGR02318 phosphono_phnM phosp 99.6 1.7E-13 3.7E-18 123.3 19.9 59 22-91 1-59 (376)
77 cd01300 YtcJ_like YtcJ_like me 99.6 2.6E-13 5.7E-18 126.5 21.6 73 218-298 290-374 (479)
78 PRK02382 dihydroorotase; Provi 99.6 3.2E-13 6.9E-18 124.5 21.4 177 18-247 1-184 (443)
79 PRK07369 dihydroorotase; Provi 99.6 3.2E-13 7E-18 123.1 20.9 96 18-146 1-96 (418)
80 PF01979 Amidohydro_1: Amidohy 99.6 9.7E-16 2.1E-20 136.1 4.2 198 77-298 1-239 (333)
81 PRK06189 allantoinase; Provisi 99.6 3E-13 6.5E-18 125.0 19.8 93 17-146 1-93 (451)
82 PF13594 Amidohydro_5: Amidohy 99.6 5.1E-15 1.1E-19 99.8 5.9 44 43-90 1-44 (68)
83 PRK09059 dihydroorotase; Valid 99.6 7.2E-13 1.6E-17 121.3 21.9 100 17-147 1-100 (429)
84 TIGR01178 ade adenine deaminas 99.6 2.9E-13 6.3E-18 126.8 19.1 174 20-245 1-184 (552)
85 COG0044 PyrC Dihydroorotase an 99.6 7.6E-13 1.7E-17 120.0 20.4 174 20-250 2-184 (430)
86 TIGR03583 EF_0837 probable ami 99.5 7.9E-13 1.7E-17 119.1 18.6 186 20-255 2-197 (365)
87 cd01292 metallo-dependent_hydr 99.5 6.5E-13 1.4E-17 114.1 15.7 186 82-299 1-209 (275)
88 PRK09358 adenosine deaminase; 99.5 4.7E-13 1E-17 119.3 14.8 178 95-301 51-258 (340)
89 PRK09060 dihydroorotase; Valid 99.5 5.4E-12 1.2E-16 116.3 20.8 93 17-146 3-95 (444)
90 COG1001 AdeC Adenine deaminase 99.5 8.6E-13 1.9E-17 120.1 14.4 181 18-246 23-212 (584)
91 cd01320 ADA Adenosine deaminas 99.5 1.2E-12 2.7E-17 115.9 14.2 177 95-301 43-249 (325)
92 TIGR03121 one_C_dehyd_A formyl 99.5 1.5E-12 3.2E-17 119.9 14.2 114 21-147 2-120 (556)
93 PRK08044 allantoinase; Provisi 99.4 2.1E-11 4.5E-16 112.5 21.3 91 18-146 2-92 (449)
94 PRK10027 cryptic adenine deami 99.4 6.2E-12 1.3E-16 118.2 17.4 176 19-244 30-216 (588)
95 PRK08417 dihydroorotase; Provi 99.4 1E-11 2.2E-16 112.5 17.7 148 43-247 1-153 (386)
96 cd01304 FMDH_A Formylmethanofu 99.4 6.7E-12 1.5E-16 115.1 15.8 61 23-92 1-61 (541)
97 TIGR00857 pyrC_multi dihydroor 99.4 5.5E-11 1.2E-15 108.7 20.5 156 39-244 4-168 (411)
98 TIGR01430 aden_deam adenosine 99.4 4.7E-12 1E-16 112.2 12.6 170 101-300 48-247 (324)
99 COG0804 UreC Urea amidohydrola 99.4 1.7E-11 3.7E-16 106.0 14.3 180 7-250 54-254 (568)
100 cd01309 Met_dep_hydrolase_C Me 99.3 7.7E-12 1.7E-16 112.2 10.1 88 47-143 1-88 (359)
101 COG3454 Metal-dependent hydrol 99.2 4.1E-11 9E-16 101.1 8.6 94 22-145 2-95 (377)
102 COG1229 FwdA Formylmethanofura 99.2 7.7E-10 1.7E-14 96.1 15.3 67 17-91 1-67 (575)
103 COG3653 N-acyl-D-aspartate/D-g 99.2 2.7E-11 5.9E-16 105.6 5.6 70 18-93 5-74 (579)
104 cd01317 DHOase_IIa Dihydroorot 99.2 2.6E-10 5.6E-15 103.0 12.3 70 218-298 166-236 (374)
105 PRK01211 dihydroorotase; Provi 99.1 1.8E-10 4E-15 104.6 7.7 73 38-146 13-85 (409)
106 PRK04250 dihydroorotase; Provi 99.1 2.3E-10 5E-15 103.8 8.3 85 25-147 3-87 (398)
107 KOG3892 N-acetyl-glucosamine-6 99.0 8.8E-10 1.9E-14 90.9 8.6 136 21-192 14-163 (407)
108 PRK00369 pyrC dihydroorotase; 98.7 1.6E-08 3.4E-13 91.5 6.5 74 39-146 12-86 (392)
109 cd01295 AdeC Adenine deaminase 98.7 1.8E-07 3.9E-12 85.9 13.1 135 72-247 1-145 (422)
110 cd00530 PTE Phosphotriesterase 98.5 8.7E-06 1.9E-10 71.1 15.2 155 124-290 31-194 (293)
111 cd01302 Cyclic_amidohydrolases 98.4 1.3E-05 2.8E-10 71.5 14.0 172 76-291 1-190 (337)
112 cd00443 ADA_AMPD Adenosine/AMP 98.1 2.7E-05 5.9E-10 68.3 11.2 157 118-302 39-230 (305)
113 PRK09875 putative hydrolase; P 98.1 0.00017 3.7E-09 62.6 15.3 151 125-287 34-192 (292)
114 cd01318 DHOase_IIb Dihydroorot 98.0 0.00011 2.3E-09 66.2 12.6 45 75-146 1-45 (361)
115 PF13147 Amidohydro_4: Amidohy 97.8 1.1E-05 2.4E-10 69.8 3.2 63 72-159 1-65 (304)
116 PF02126 PTE: Phosphotriestera 97.7 0.00028 6E-09 61.7 10.3 152 124-287 37-196 (308)
117 PTZ00124 adenosine deaminase; 97.7 0.0014 3E-08 58.8 14.3 77 210-301 194-285 (362)
118 cd01321 ADGF Adenosine deamina 97.6 0.00074 1.6E-08 60.2 11.3 77 210-301 164-261 (345)
119 cd01306 PhnM PhnM is believed 97.6 0.0024 5.2E-08 56.4 14.0 37 219-255 159-195 (325)
120 PF07969 Amidohydro_3: Amidohy 97.6 0.00054 1.2E-08 62.6 10.1 64 214-291 216-279 (404)
121 TIGR00010 hydrolase, TatD fami 97.5 0.00056 1.2E-08 58.1 8.9 126 132-287 22-157 (252)
122 cd01294 DHOase Dihydroorotase 97.5 0.0037 8.1E-08 55.7 14.3 23 221-243 111-133 (335)
123 COG1099 Predicted metal-depend 97.4 0.0042 9.1E-08 50.6 11.8 106 157-284 59-167 (254)
124 COG1735 Php Predicted metal-de 97.3 0.011 2.4E-07 50.6 14.2 144 128-287 51-206 (316)
125 cd01310 TatD_DNAse TatD like p 97.2 0.0041 9E-08 52.7 10.3 51 221-286 106-156 (251)
126 cd01316 CAD_DHOase The eukaryo 97.0 0.00042 9E-09 61.9 2.9 44 76-146 2-45 (344)
127 PF00449 Urease_alpha: Urease 97.0 0.0024 5.2E-08 46.1 5.6 49 7-59 53-102 (121)
128 PRK11449 putative deoxyribonuc 96.8 0.017 3.7E-07 49.4 11.0 55 222-291 113-167 (258)
129 COG0084 TatD Mg-dependent DNas 96.8 0.028 6E-07 47.8 11.5 55 222-291 111-165 (256)
130 PRK10812 putative DNAse; Provi 96.7 0.014 3.1E-07 50.1 9.2 56 222-291 110-165 (265)
131 PRK10425 DNase TatD; Provision 96.6 0.018 3.8E-07 49.3 9.4 55 223-291 108-162 (258)
132 PF01026 TatD_DNase: TatD rela 96.4 0.012 2.6E-07 50.3 7.4 136 132-291 21-165 (255)
133 COG1816 Add Adenosine deaminas 96.4 0.05 1.1E-06 48.2 11.2 154 118-301 78-261 (345)
134 PF00962 A_deaminase: Adenosin 95.9 0.028 6E-07 50.0 7.2 153 119-301 72-256 (331)
135 cd01311 PDC_hydrolase 2-pyrone 95.0 1.1 2.4E-05 38.3 14.0 51 221-286 108-158 (263)
136 KOG1097 Adenine deaminase/aden 94.9 0.15 3.3E-06 45.6 8.2 78 209-301 211-304 (399)
137 PF12890 DHOase: Dihydro-orota 93.7 0.021 4.5E-07 42.7 0.2 17 75-91 1-17 (142)
138 TIGR01431 adm_rel adenosine de 93.2 0.64 1.4E-05 43.5 9.2 82 209-301 290-387 (479)
139 COG5016 Pyruvate/oxaloacetate 85.8 15 0.00032 33.4 10.9 105 129-248 102-211 (472)
140 TIGR00856 pyrC_dimer dihydroor 84.6 12 0.00026 33.4 10.3 24 221-244 113-136 (341)
141 PLN02599 dihydroorotase 79.4 29 0.00063 31.3 10.7 24 222-246 135-158 (364)
142 COG1831 Predicted metal-depend 75.2 8.4 0.00018 32.8 5.6 60 218-286 140-199 (285)
143 PRK14042 pyruvate carboxylase 73.5 37 0.00081 32.8 10.2 105 129-248 100-209 (596)
144 PRK12581 oxaloacetate decarbox 72.0 57 0.0012 30.5 10.7 103 130-247 110-217 (468)
145 PF02811 PHP: PHP domain; Int 71.2 11 0.00024 29.4 5.4 61 83-170 1-64 (175)
146 PRK05672 dnaE2 error-prone DNA 66.6 12 0.00026 38.8 5.6 67 78-171 1-70 (1046)
147 smart00481 POLIIIAc DNA polyme 65.5 34 0.00073 22.1 6.2 38 133-170 23-63 (67)
148 KOG1405 4-aminobutyrate aminot 64.8 32 0.00069 30.8 7.1 58 185-242 250-311 (484)
149 COG4464 CapC Capsular polysacc 63.8 11 0.00024 31.1 3.8 17 130-146 25-41 (254)
150 COG3618 Predicted metal-depend 60.0 1.2E+02 0.0025 26.3 11.0 49 223-285 124-172 (279)
151 PRK09532 DNA polymerase III su 59.2 23 0.0005 36.0 6.0 62 82-170 3-67 (874)
152 KOG4549 Magnesium-dependent ph 56.0 39 0.00085 25.4 5.2 80 67-163 6-85 (144)
153 PRK08185 hypothetical protein; 55.8 87 0.0019 27.2 8.3 39 210-248 42-80 (283)
154 PRK12330 oxaloacetate decarbox 54.3 1.6E+02 0.0034 28.0 10.2 103 130-247 102-211 (499)
155 PRK07135 dnaE DNA polymerase I 54.3 29 0.00063 35.7 5.8 63 82-171 3-68 (973)
156 PRK09856 fructoselysine 3-epim 53.7 1.4E+02 0.003 25.4 11.2 111 130-243 18-149 (275)
157 TIGR01235 pyruv_carbox pyruvat 53.3 3E+02 0.0066 29.2 13.0 110 129-247 629-743 (1143)
158 PRK05673 dnaE DNA polymerase I 48.4 37 0.0008 35.7 5.6 63 81-170 1-66 (1135)
159 PRK13404 dihydropyrimidinase; 47.9 28 0.0006 32.7 4.4 60 221-292 219-279 (477)
160 PRK07374 dnaE DNA polymerase I 47.8 42 0.0009 35.4 5.9 62 82-170 3-67 (1170)
161 TIGR00594 polc DNA-directed DN 46.8 41 0.0009 34.9 5.7 62 82-170 1-65 (1022)
162 PRK14040 oxaloacetate decarbox 46.0 2E+02 0.0044 28.0 9.9 103 130-247 102-209 (593)
163 PF04551 GcpE: GcpE protein; 45.8 1.3E+02 0.0028 27.0 7.8 96 150-250 120-215 (359)
164 smart00518 AP2Ec AP endonuclea 45.6 1.6E+02 0.0035 24.9 8.6 19 225-243 86-105 (273)
165 PRK01060 endonuclease IV; Prov 45.5 1.7E+02 0.0036 25.0 8.6 21 224-244 90-111 (281)
166 cd01319 AMPD AMP deaminase (AM 44.2 32 0.0007 32.4 4.1 57 225-299 312-385 (496)
167 PRK06740 histidinol-phosphatas 43.7 2.4E+02 0.0051 25.1 9.8 70 82-165 2-78 (331)
168 PRK00366 ispG 4-hydroxy-3-meth 43.6 2.5E+02 0.0053 25.3 9.4 113 132-248 95-213 (360)
169 PRK14041 oxaloacetate decarbox 42.9 2.1E+02 0.0045 26.9 9.2 103 130-247 100-207 (467)
170 TIGR01429 AMP_deaminase AMP de 42.1 38 0.00083 32.7 4.3 57 225-298 424-496 (611)
171 COG3977 Alanine-alpha-ketoisov 42.0 39 0.00084 29.6 3.9 57 218-288 194-250 (417)
172 PF03932 CutC: CutC family; I 40.6 2E+02 0.0044 23.5 8.6 75 194-286 75-152 (201)
173 PLN02727 NAD kinase 39.8 2.9E+02 0.0063 28.4 9.9 40 218-257 322-362 (986)
174 TIGR01108 oadA oxaloacetate de 38.6 2.5E+02 0.0053 27.3 9.2 103 130-247 96-203 (582)
175 PRK12738 kbaY tagatose-bisphos 38.3 2.7E+02 0.0059 24.3 8.9 109 131-244 90-210 (286)
176 PRK06826 dnaE DNA polymerase I 38.1 69 0.0015 33.8 5.7 63 82-171 5-70 (1151)
177 TIGR01362 KDO8P_synth 3-deoxy- 38.1 2.6E+02 0.0056 23.9 9.0 76 215-291 51-133 (258)
178 PRK13523 NADPH dehydrogenase N 37.1 56 0.0012 29.2 4.4 48 246-298 133-180 (337)
179 TIGR00612 ispG_gcpE 1-hydroxy- 36.8 3.1E+02 0.0067 24.5 9.3 112 133-248 88-204 (346)
180 COG0587 DnaE DNA polymerase II 35.5 59 0.0013 34.1 4.7 64 79-169 1-67 (1139)
181 PRK12737 gatY tagatose-bisphos 34.8 2.7E+02 0.0059 24.2 8.1 109 131-244 90-210 (284)
182 PRK09282 pyruvate carboxylase 34.8 3.1E+02 0.0068 26.7 9.3 103 130-247 101-208 (592)
183 PRK08392 hypothetical protein; 33.5 2.7E+02 0.0058 22.8 8.9 22 222-243 136-157 (215)
184 PRK09195 gatY tagatose-bisphos 33.4 2.2E+02 0.0047 24.8 7.3 45 210-255 47-92 (284)
185 PF03851 UvdE: UV-endonuclease 33.3 2.2E+02 0.0047 24.7 7.2 20 224-243 88-107 (275)
186 TIGR01858 tag_bisphos_ald clas 32.8 3.3E+02 0.0072 23.7 8.7 112 131-247 88-211 (282)
187 COG3033 TnaA Tryptophanase [Am 32.5 1.9E+02 0.0041 26.3 6.6 59 189-247 170-230 (471)
188 PRK12737 gatY tagatose-bisphos 32.1 2.5E+02 0.0053 24.5 7.4 39 210-248 47-86 (284)
189 COG2159 Predicted metal-depend 31.4 3.5E+02 0.0077 23.5 11.2 56 188-248 113-169 (293)
190 PRK05898 dnaE DNA polymerase I 31.1 1.1E+02 0.0024 31.5 5.8 63 82-171 2-67 (971)
191 TIGR01858 tag_bisphos_ald clas 30.7 2.9E+02 0.0064 24.0 7.6 45 210-255 45-90 (282)
192 PF10055 DUF2292: Uncharacteri 30.6 55 0.0012 18.9 2.1 17 41-57 18-34 (38)
193 PRK13958 N-(5'-phosphoribosyl) 30.3 2.1E+02 0.0045 23.5 6.4 25 228-252 67-92 (207)
194 TIGR00542 hxl6Piso_put hexulos 30.0 3.5E+02 0.0076 23.0 10.5 22 223-244 133-154 (279)
195 COG0191 Fba Fructose/tagatose 29.8 3.1E+02 0.0067 23.9 7.4 45 210-255 47-93 (286)
196 COG0269 SgbH 3-hexulose-6-phos 29.2 2.7E+02 0.0058 23.1 6.7 32 220-251 90-121 (217)
197 PF02679 ComA: (2R)-phospho-3- 29.1 72 0.0016 27.0 3.5 45 222-272 83-127 (244)
198 PRK12738 kbaY tagatose-bisphos 28.7 2.6E+02 0.0057 24.3 7.0 31 224-255 62-92 (286)
199 PRK12857 fructose-1,6-bisphosp 28.6 3.9E+02 0.0084 23.2 8.0 39 210-248 47-86 (284)
200 PF11068 YlqD: YlqD protein; 28.5 53 0.0011 24.9 2.4 14 40-53 117-130 (131)
201 TIGR00167 cbbA ketose-bisphosp 28.4 4E+02 0.0087 23.2 8.7 52 192-246 162-216 (288)
202 PRK05198 2-dehydro-3-deoxyphos 28.3 3.9E+02 0.0084 23.0 9.1 75 216-291 60-141 (264)
203 PF04909 Amidohydro_2: Amidohy 28.2 1.3E+02 0.0028 25.1 5.1 27 218-244 112-138 (273)
204 cd02930 DCR_FMN 2,4-dienoyl-Co 27.8 1E+02 0.0023 27.6 4.6 47 246-297 128-174 (353)
205 TIGR00629 uvde UV damage endon 27.5 1.8E+02 0.0039 25.7 5.8 23 223-245 94-116 (312)
206 PRK12331 oxaloacetate decarbox 27.1 5.2E+02 0.011 24.2 11.7 103 130-247 101-208 (448)
207 TIGR03178 allantoinase allanto 27.1 1.3E+02 0.0028 27.9 5.2 55 222-291 215-273 (443)
208 cd04734 OYE_like_3_FMN Old yel 27.1 1.1E+02 0.0024 27.4 4.6 48 246-298 132-179 (343)
209 COG0821 gcpE 1-hydroxy-2-methy 27.0 1.7E+02 0.0038 26.0 5.5 52 221-273 108-168 (361)
210 cd00947 TBP_aldolase_IIB Tagat 26.9 3.7E+02 0.0081 23.3 7.6 26 223-248 56-81 (276)
211 COG0623 FabI Enoyl-[acyl-carri 26.8 3.7E+02 0.008 22.8 7.1 58 221-289 41-98 (259)
212 PRK01222 N-(5'-phosphoribosyl) 26.8 2.2E+02 0.0048 23.4 6.0 30 227-256 68-98 (210)
213 PRK08195 4-hyroxy-2-oxovalerat 26.4 4.7E+02 0.01 23.3 9.8 100 131-247 94-200 (337)
214 COG2131 ComEB Deoxycytidylate 25.7 3.4E+02 0.0074 21.5 7.9 21 39-59 29-49 (164)
215 PRK00366 ispG 4-hydroxy-3-meth 25.6 2.5E+02 0.0053 25.3 6.3 51 221-272 115-174 (360)
216 PRK06801 hypothetical protein; 25.5 4.2E+02 0.009 23.1 7.7 39 210-248 47-86 (286)
217 PRK12857 fructose-1,6-bisphosp 25.3 4.4E+02 0.0095 22.9 7.8 51 191-244 158-210 (284)
218 PRK02308 uvsE putative UV dama 25.1 2.3E+02 0.005 24.9 6.1 32 225-256 132-167 (303)
219 PF02836 Glyco_hydro_2_C: Glyc 25.0 4.5E+02 0.0097 22.7 11.5 101 131-237 42-150 (298)
220 COG0821 gcpE 1-hydroxy-2-methy 25.0 4E+02 0.0087 23.8 7.3 111 133-247 90-205 (361)
221 PHA00742 hypothetical protein 24.3 1.3E+02 0.0028 23.8 3.8 47 238-285 91-142 (211)
222 PF01212 Beta_elim_lyase: Beta 24.3 81 0.0018 27.5 3.1 26 219-246 141-166 (290)
223 PRK06189 allantoinase; Provisi 24.1 1.2E+02 0.0026 28.2 4.4 55 222-291 218-276 (451)
224 TIGR03849 arch_ComA phosphosul 23.8 3.3E+02 0.0072 23.0 6.5 60 206-272 26-85 (237)
225 PLN02540 methylenetetrahydrofo 23.7 4E+02 0.0087 25.8 7.8 73 191-272 15-87 (565)
226 COG1168 MalY Bifunctional PLP- 23.3 2.5E+02 0.0053 25.6 5.8 31 211-241 164-196 (388)
227 COG3142 CutC Uncharacterized p 23.3 3.7E+02 0.0079 22.6 6.4 65 206-286 89-153 (241)
228 PRK06920 dnaE DNA polymerase I 23.3 1.5E+02 0.0033 31.2 5.3 62 82-170 3-67 (1107)
229 PF04748 Polysacc_deac_2: Dive 23.0 4.3E+02 0.0094 21.8 10.0 105 135-240 19-123 (213)
230 PF13378 MR_MLE_C: Enolase C-t 22.9 1.8E+02 0.0038 20.8 4.3 27 224-250 34-60 (111)
231 PRK05451 dihydroorotase; Provi 22.7 3.5E+02 0.0077 24.1 7.0 24 221-244 116-139 (345)
232 PF15608 PELOTA_1: PELOTA RNA 22.7 1.8E+02 0.004 20.8 4.1 22 221-242 65-86 (100)
233 COG2063 FlgH Flagellar basal b 22.6 2.9E+02 0.0064 23.1 5.8 44 36-91 155-198 (230)
234 PRK12581 oxaloacetate decarbox 22.4 6.5E+02 0.014 23.8 8.7 19 221-239 130-148 (468)
235 PRK02134 hypothetical protein; 22.3 4.9E+02 0.011 22.1 9.6 56 186-242 98-153 (249)
236 PRK11572 copper homeostasis pr 22.2 4.9E+02 0.011 22.1 8.1 64 205-286 88-153 (248)
237 TIGR00612 ispG_gcpE 1-hydroxy- 22.0 2.2E+02 0.0047 25.5 5.2 52 221-273 106-166 (346)
238 PRK07279 dnaE DNA polymerase I 21.9 2.1E+02 0.0045 30.0 5.8 62 82-170 2-66 (1034)
239 PRK12457 2-dehydro-3-deoxyphos 21.5 5.4E+02 0.012 22.3 8.6 75 216-291 66-147 (281)
240 cd04735 OYE_like_4_FMN Old yel 21.3 1.5E+02 0.0033 26.6 4.4 48 246-298 135-182 (353)
241 PRK09357 pyrC dihydroorotase; 21.2 1.6E+02 0.0035 27.0 4.7 58 224-292 212-269 (423)
242 PRK08610 fructose-bisphosphate 21.1 5.6E+02 0.012 22.3 10.0 121 131-255 93-221 (286)
243 PF07894 DUF1669: Protein of u 20.7 4.6E+02 0.01 22.8 6.9 50 192-249 138-187 (284)
244 TIGR00159 conserved hypothetic 20.5 91 0.002 25.8 2.5 23 35-57 121-143 (211)
245 PLN02363 phosphoribosylanthran 20.0 4.5E+02 0.0097 22.5 6.7 26 207-232 70-95 (256)
No 1
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=100.00 E-value=8.9e-45 Score=332.30 Aligned_cols=270 Identities=27% Similarity=0.392 Sum_probs=234.8
Q ss_pred cEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccC
Q 022028 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (304)
Q Consensus 20 ~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~ 99 (304)
.++|+|++|+++++...++++++|+|+||+|++|++..... . ..+.++||++|++|+|||||+|+|+.++.+||..+
T Consensus 2 ~~li~~~~v~t~~~~~~~~~~g~V~i~~g~I~~vg~~~~~~-~--~~~~~viD~~g~~i~PGlVn~H~H~~~~~~rg~~~ 78 (435)
T PRK15493 2 KTTYVNATIVTMNEQNEVIENGYIIVENDQIIDVNSGEFAS-D--FEVDEVIDMKGKWVLPGLVNTHTHVVMSLLRGIGD 78 (435)
T ss_pred eEEEEccEEEEeCCCCcEecCcEEEEECCEEEEEcCccccc-c--CCCCeEEeCCCCEEccceeecccCccchhhhccCC
Confidence 37899999999887667889999999999999999853211 1 12568999999999999999999999999999988
Q ss_pred CCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCC---CCHHHHHHHHHHcCCeEEeecccccCCCC
Q 022028 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---QHVSEMAKAVELLGLRACLVQSTMDCGEG 176 (304)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~---~~~~~~~~~~~~~gir~~~~~~~~d~g~~ 176 (304)
+.++.+|+...+|+.+..+++++.|..++.++.++|++||||++|++. ...+...+++.+.|+|.++++.+++.+.
T Consensus 79 ~~~l~~wl~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~- 157 (435)
T PRK15493 79 DMLLQPWLETRIWPLESQFTPELAVASTELGLLEMVKSGTTSFSDMFNPIGVDQDAIMETVSRSGMRAAVSRTLFSFGT- 157 (435)
T ss_pred CCCHHHHHHhchhhchhcCCHHHHHHHHHHHHHHHHhCCccEEEccccccccCHHHHHHHHHHcCCcEEEeeeecCCCC-
Confidence 889999999888999888999999999999999999999999999763 2346778899999999999987776432
Q ss_pred CCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHh
Q 022028 177 LPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT 256 (304)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~ 256 (304)
+ ......++..++++++|... .+++++.++|++++++++++++++.++|+++|+++++|++|+..+.+.+++.
T Consensus 158 -~-----~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~t~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~ 230 (435)
T PRK15493 158 -K-----EDEKKAIEEAEKYVKRYYNE-SGMLTTMVAPHSPYTCSTELLEECARIAVENQTMVHIHLSETEREVRDIEAQ 230 (435)
T ss_pred -C-----ccHHHHHHHHHHHHHHhcCC-CCCeEEEEeCCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHH
Confidence 1 12345667777888887643 4689999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------ccccccccccc
Q 022028 257 RKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAVH 302 (304)
Q Consensus 257 ~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~~ 302 (304)
+|.+ +++++++.|+|+++++++||++++++|++ ||.||++|++.
T Consensus 231 ~g~~--~~~~l~~~Gll~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P~sn~~l~~g 285 (435)
T PRK15493 231 YGKR--PVEYAASCGLFKRPTVIAHGVVLNDNERAFLAEHDVRVAHNPNSNLKLGSG 285 (435)
T ss_pred hCCC--HHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHHcCCeEEEChHHHHHHhcC
Confidence 9975 99999999999999999999999999997 99999988764
No 2
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=100.00 E-value=1.5e-44 Score=331.41 Aligned_cols=271 Identities=25% Similarity=0.429 Sum_probs=231.9
Q ss_pred EEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCC
Q 022028 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (304)
Q Consensus 21 ~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~ 100 (304)
++|+|++|+++++...++++++|.|+||+|++|++..+....++ +.++||++|++|+|||||+|+|+.++.+||...+
T Consensus 1 ~li~~~~i~t~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~--~~~~id~~g~~v~PG~vd~H~H~~~~~~rg~~~d 78 (441)
T TIGR03314 1 LLIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELKQKYP--EATFIDAKGKLIMPGFINTHNHFYSTFARGMMAD 78 (441)
T ss_pred CEEECCEEEecCCCCceEeccEEEEECCEEEEEcCchhhcccCC--CCeEEeCCCCEEecCeeecccchhhhhhcccccc
Confidence 36899999987765557889999999999999998643321122 4589999999999999999999999999987644
Q ss_pred ----CCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC------CHHHHHHHHHHcCCeEEeeccc
Q 022028 101 ----VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ------HVSEMAKAVELLGLRACLVQST 170 (304)
Q Consensus 101 ----~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~------~~~~~~~~~~~~gir~~~~~~~ 170 (304)
.++.+|+...+|+.+..++++++|.+++.++.+++++||||++|+... ..+.+.+++.+.|+|.+++..+
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~ 158 (441)
T TIGR03314 79 IPPPPDFISILKNLWWRLDRALTLEDVYYSGLICSLDAIKSGCTTVIDHHASPNAITGSLSTIRKAADEAGLRTMLCYET 158 (441)
T ss_pred CCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHcCCeEEEecccccccccchHHHHHHHHHHhCCeEEEeeee
Confidence 368899988888988889999999999999999999999999998521 1456789999999999998877
Q ss_pred ccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhH
Q 022028 171 MDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYEN 250 (304)
Q Consensus 171 ~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~ 250 (304)
++.... ....+.++...++++++....++++++.++|+++++++++.++.+.++|+++++++++|++|+..+.
T Consensus 159 ~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~i~~H~~E~~~e~ 231 (441)
T TIGR03314 159 SDRDGG-------KEMQEGVEENIAFIKKSSGKEPYLVEAHIGAHAPFTVSDAGLEMCREAVQATGRGFHIHVAEDIYDV 231 (441)
T ss_pred ecCCCc-------ccHHHHHHHHHHHHHHhccCCCCceEEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHH
Confidence 763211 1234556667778888876556789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------ccccccccccc
Q 022028 251 QVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAVH 302 (304)
Q Consensus 251 ~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~~ 302 (304)
+.+++++|++ ++++|++.|+|+++++++||++++++|++ ||.||++|++.
T Consensus 232 ~~~~~~~g~~--~~~~l~~~G~l~~~~~~~H~~~~~~~d~~~la~~g~~v~~cP~sn~~l~~G 292 (441)
T TIGR03314 232 EDSHHKYGKD--IVERLADFGLLGSKTLAAHCIYLSDREIELLNETDTFVVHNPESNMGNAVG 292 (441)
T ss_pred HHHHHHcCCC--HHHHHHHCCCCCCCeEEEEEecCCHHHHHHHHHcCCcEEECHHHHhhhccC
Confidence 9999999985 99999999999999999999999999998 99999999864
No 3
>PRK06687 chlorohydrolase; Validated
Probab=100.00 E-value=2.3e-43 Score=322.47 Aligned_cols=269 Identities=25% Similarity=0.420 Sum_probs=234.1
Q ss_pred EEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCC
Q 022028 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (304)
Q Consensus 21 ~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~ 100 (304)
++|+|++|+++++..+++++++|+|+||+|++|++..+.. ...+.++||+.|++|+|||||+|+|+.++.+||...+
T Consensus 2 ~~~~n~~vvt~d~~~~~~~~g~VlV~~g~I~aVg~~~~~~---~~~~~~viD~~g~~v~PGlIn~H~H~~~~~~rg~~~~ 78 (419)
T PRK06687 2 KVFQHVNIVTCDQDFHVYLDGILAVKDSQIVYVGQDKPAF---LEQAEQIIDYQGAWIMPGLVNCHTHSAMTGLRGIRDD 78 (419)
T ss_pred cceEeeEEEEeCCCceEecCcEEEEECCEEEEecCccccc---ccccCeEEeCCCCEEccceeeeccCCCccccccccCC
Confidence 5799999999987777889999999999999999864321 1124689999999999999999999999999998877
Q ss_pred CCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCC---CCHHHHHHHHHHcCCeEEeecccccCCCCC
Q 022028 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---QHVSEMAKAVELLGLRACLVQSTMDCGEGL 177 (304)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~---~~~~~~~~~~~~~gir~~~~~~~~d~g~~~ 177 (304)
.++.+|+...+|+.+..+++++.+..++.++.+++++||||++|+.. ...+...+++.+.|+|.++++.+++.+.
T Consensus 79 ~~~~~wl~~~~~~~~~~~~~~~~~~~~~~a~~e~l~~GvTTv~d~~~~~~~~~~~~~~a~~~~Gir~~~~~~~~~~~~-- 156 (419)
T PRK06687 79 SNLHEWLNDYIWPAESEFTPDMTTNAVKEALTEMLQSGTTTFNDMYNPNGVDIQQIYQVVKTSKMRCYFSPTLFSSET-- 156 (419)
T ss_pred CCHHHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCcceeehhhccccccHHHHHHHHHHhCCceEeccccccCCc--
Confidence 88999999988988888999999999999999999999999999753 2356778899999999988776654221
Q ss_pred CCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhc
Q 022028 178 PASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTR 257 (304)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~ 257 (304)
....+.++..+++++++.....++++++++|++++++++++++++.++|+++|+++++|+.|+..+.+.+.+.+
T Consensus 157 ------~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~~~ 230 (419)
T PRK06687 157 ------ETTAETISRTRSIIDEILKYKNPNFKVMVAPHSPYSCSRDLLEASLEMAKELNIPLHVHVAETKEESGIILKRY 230 (419)
T ss_pred ------ccHHHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHH
Confidence 12456677788888888765567799999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------ccccccccccc
Q 022028 258 KVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAVH 302 (304)
Q Consensus 258 g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~~ 302 (304)
|.+ +++++++.|+|+++++++||++++++|++ ||.||.+++..
T Consensus 231 g~~--~~~~l~~~g~l~~~~~~~H~~~~~~~~~~~la~~g~~v~~~P~sn~~l~~g 284 (419)
T PRK06687 231 GKR--PLAFLEELGYLDHPSVFAHGVELNEREIERLASSQVAIAHNPISNLKLASG 284 (419)
T ss_pred CcC--HHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHHcCCeEEECcHHhhhhccC
Confidence 975 99999999999999999999999999998 99999988764
No 4
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=100.00 E-value=4.9e-43 Score=322.16 Aligned_cols=271 Identities=25% Similarity=0.436 Sum_probs=230.0
Q ss_pred EEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccC-
Q 022028 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD- 99 (304)
Q Consensus 21 ~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~- 99 (304)
++|+|++|+++++...++++++|.|+||+|++|++..+....+ .+.++||++|++|+|||||+|+|++++.++|...
T Consensus 2 ~li~~~~i~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~~~--~~~~viD~~g~lv~PGfID~H~H~~~~~~rg~~~~ 79 (442)
T PRK07203 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAKY--PDAEFIDAKGKLIMPGLINSHNHIYSGLARGMMAN 79 (442)
T ss_pred EEEECCEEEeCCCCCceeeccEEEEECCEEEEEeCchhhcccc--CCCeEEeCCCCEEecceeeccccchhhhhcccccc
Confidence 6799999998765545778899999999999999753322111 2458999999999999999999999998888642
Q ss_pred ---CCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC------CHHHHHHHHHHcCCeEEeeccc
Q 022028 100 ---DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ------HVSEMAKAVELLGLRACLVQST 170 (304)
Q Consensus 100 ---~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~------~~~~~~~~~~~~gir~~~~~~~ 170 (304)
..++.+|+...+|+....++++++|.+++.++.+++++||||++|+... ..+...+++++.|+|.+++..+
T Consensus 80 ~~~~~~l~~~l~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~ 159 (442)
T PRK07203 80 IPPPPDFISILKNLWWRLDRALTLEDVYYSALICSLEAIKNGVTTVFDHHASPNYIGGSLFTIADAAKKVGLRAMLCYET 159 (442)
T ss_pred cCCCCCHHHHHHhheehhhhcCCHHHHHHHHHHHHHHHHHcCceEEEccccccccccchHHHHHHHHHHhCCeEEEeccc
Confidence 2478899988888888889999999999999999999999999987521 2356778899999999988777
Q ss_pred ccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhH
Q 022028 171 MDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYEN 250 (304)
Q Consensus 171 ~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~ 250 (304)
+|.+ ......+.++...++++.+....++++...++|+++++++++.++.+.++|+++|+++++|++|+..+.
T Consensus 160 ~d~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~lA~~~g~~i~~H~~E~~~e~ 232 (442)
T PRK07203 160 SDRD-------GEKELQEGVEENIRFIKHIDEAKDDMVEAMFGLHASFTLSDATLEKCREAVKETGRGYHIHVAEGIYDV 232 (442)
T ss_pred ccCC-------cchhHHHHHHHHHHHHHHhcCCCCCceEEEEccCCCcCcCHHHHHHHHHHHHHcCCcEEEEecCChHHH
Confidence 6532 111234566777888888876556689999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------ccccccccccc
Q 022028 251 QVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAVH 302 (304)
Q Consensus 251 ~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~~ 302 (304)
+.+.++||.+ +++++++.|+|+++++++||++++++|++ ||.||+++++.
T Consensus 233 ~~~~~~~g~~--~v~~l~~~Gll~~~~~~~H~~~~~~~d~~~la~~g~~v~~~P~sn~~l~~g 293 (442)
T PRK07203 233 SDSHKKYGKD--IVERLADFGLLGEKTLAAHCIYLSDEEIDLLKETDTFVVHNPESNMGNAVG 293 (442)
T ss_pred HHHHHHcCCC--HHHHHHhCCCCCCCcEEEEeecCCHHHHHHHHhcCCeEEECchhhhhcccC
Confidence 9999999985 99999999999999999999999999997 99999998764
No 5
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=100.00 E-value=1e-40 Score=306.80 Aligned_cols=273 Identities=27% Similarity=0.451 Sum_probs=231.1
Q ss_pred CcccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhc
Q 022028 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (304)
Q Consensus 17 ~~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g 96 (304)
.+.+++|+|++|+++++..+++++++|+|+||+|++|++..+....+ .+.++||++|++|+|||||+|+|+.++.++|
T Consensus 5 ~~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~~~~--~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~g 82 (443)
T PRK09045 5 EPVDLLIEARWIVPVEPAGVVLEDHAVAIRDGRIVAILPRAEARARY--AAAETVELPDHVLIPGLINAHTHAAMSLLRG 82 (443)
T ss_pred ccccEEEEccEEEEeCCCceEeeccEEEEECCEEEEecCcccccccC--CcceEEeCCCCEEecCEeccccChhhHhhhh
Confidence 34578999999999886567889999999999999999865432222 2568999999999999999999999999998
Q ss_pred ccCCCCccccccccccCcc-CCCChHHHHHHHHHHHHHHHhcCcceeecCCCCCHHHHHHHHHHcCCeEEeecccccCCC
Q 022028 97 IADDVDLMTWLHDRIWPYE-SNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGE 175 (304)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~-~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~gir~~~~~~~~d~g~ 175 (304)
...+.++.+|+...+|+.+ ..+++++.+..++.++.+++++||||++|+. .+.+...+++.+.|+|.+++...++..
T Consensus 83 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~G~Ttv~d~~-~~~~~~~~~~~~~G~R~~~~~~~~~~~- 160 (443)
T PRK09045 83 LADDLPLMTWLQDHIWPAEGAWVSEEFVRDGTLLAIAEMLRGGTTCFNDMY-FFPEAAAEAAHQAGMRAQIGMPVLDFP- 160 (443)
T ss_pred ccCCCCHHHHHHhhhhhhhhccCCHHHHHHHHHHHHHHHHhcCCcEEEecc-ccHHHHHHHHHHcCCeEEEecccccCC-
Confidence 8777888899987776544 4478999999999999999999999999976 455667888899999999888776532
Q ss_pred CCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHH
Q 022028 176 GLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD 255 (304)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~ 255 (304)
..+ ....++.++...++++.+.. .+++++.++++++++++++.+++++++|+++|+++++|++|+..+.+.+.+
T Consensus 161 ---~~~-~~~~~~~l~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~ 234 (443)
T PRK09045 161 ---TAW-ASDADEYLAKGLELHDQWRH--HPLISTAFAPHAPYTVSDENLERIRTLAEQLDLPIHIHLHETAQEIADSLK 234 (443)
T ss_pred ---Ccc-ccCHHHHHHHHHHHHHHhcC--CCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEeecCcHHHHHHHHH
Confidence 111 23456677777777777753 478999999999999999999999999999999999999999999998888
Q ss_pred hcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------cccccccccc
Q 022028 256 TRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAV 301 (304)
Q Consensus 256 ~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~ 301 (304)
.+|.+ +++++++.|+++++++++||+++++++++ ||.+|+.++.
T Consensus 235 ~~g~~--~~~~l~~~g~l~~r~~~~H~~~l~~~~~~~la~~g~~i~~~P~~~~~~~~ 289 (443)
T PRK09045 235 QHGQR--PLARLARLGLLGPRLIAVHMTQLTDAEIALLAETGCSVVHCPESNLKLAS 289 (443)
T ss_pred HhCCC--HHHHHHHcCCCCCCeEEEEecCCCHHHHHHHHHcCCeEEECHHHHhhhcc
Confidence 89974 99999999999999999999999999987 9999987654
No 6
>PRK12393 amidohydrolase; Provisional
Probab=100.00 E-value=1.4e-40 Score=306.48 Aligned_cols=277 Identities=23% Similarity=0.311 Sum_probs=228.1
Q ss_pred cccEEEEccE-EEecCCCCceeeee-eEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhh
Q 022028 18 SSTMILHNAV-IVTMDKESRVFRNG-GVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95 (304)
Q Consensus 18 ~~~~li~~~~-ii~~~~~~~~~~~~-~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~ 95 (304)
|.+++|+|++ |++.++..+++.++ +|+|+||+|++|++... ..+.++||+.|++|+|||||+|+|+.++.+|
T Consensus 1 ~~~~li~~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~------~~~~~viD~~g~~v~PG~VnaH~Hl~~~~~r 74 (457)
T PRK12393 1 MPSLLIRNAAAIMTGLPGDAARLGGPDIRIRDGRIAAIGALTP------LPGERVIDATDCVVYPGWVNTHHHLFQSLLK 74 (457)
T ss_pred CCcEEEECCeEEEecCCCccccccCceEEEECCEEEEEeccCC------CCCCeEEeCCCCEEecCEeecccCccccccc
Confidence 4568999995 78766543445555 89999999999997311 1256899999999999999999999999999
Q ss_pred ccc--CCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC--------CHHHHHHHHHHcCCeEE
Q 022028 96 GIA--DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------HVSEMAKAVELLGLRAC 165 (304)
Q Consensus 96 g~~--~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~--------~~~~~~~~~~~~gir~~ 165 (304)
|.. .+.++.+|+....|+.+..++++++|..++.++.++|++||||++|+... ..+.+++++.+.|+|.+
T Consensus 75 g~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~a~~~~G~R~~ 154 (457)
T PRK12393 75 GVPAGINQSLTAWLAAVPYRFRARFDEDLFRLAARIGLVELLRSGCTTVADHHYLYHPGMPFDTGDILFDEAEALGMRFV 154 (457)
T ss_pred ccccccCCchHHHhhhCcchhhhhCCHHHHHHHHHHHHHHHHhCCccEeecchhhcccccccchHHHHHHHHHHcCCeEE
Confidence 874 35678899988788888889999999999999999999999999997421 24678899999999999
Q ss_pred eecccccCCCCCCC----CcccCChHHHHHHHHHHHHHHcCCC-CCCeEEEEeeCcc-cCCCHHHHHHHHHHHHHhCCee
Q 022028 166 LVQSTMDCGEGLPA----SWAVRTTDDCIQSQKELYAKHHHAA-DGRIRIWFGIRQI-MNATDRLLLETRDMAREFKTGI 239 (304)
Q Consensus 166 ~~~~~~d~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-~~~~~e~l~~~~~~a~~~~~~~ 239 (304)
+++...+...+... .......++.++..+++++++.... .+++.+.++|+.+ ++++++.++++.++|+++|+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~a~~~g~~~ 234 (457)
T PRK12393 155 LCRGGATQTRGDHPGLPTALRPETLDQMLADVERLVSRYHDASPDSLRRVVVAPTTPTFSLPPELLREVARAARGMGLRL 234 (457)
T ss_pred EEccccccccccCCCCCCcccccCHHHHHHHHHHHHHHhcCCCcCCceEEEEcCCCCCCCcCHHHHHHHHHHHHHcCCeE
Confidence 88765543211111 1112335666777788888876532 3467888999988 8999999999999999999999
Q ss_pred eEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------ccccccccccc
Q 022028 240 HMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAVH 302 (304)
Q Consensus 240 ~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~~ 302 (304)
++|+.|+.++++.+++.+|.+ +++++++.|+|+++++++||++++++|++ ||.||.++|..
T Consensus 235 ~~H~~e~~~~~~~~~~~~g~~--~~~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P~sn~~lg~g 306 (457)
T PRK12393 235 HSHLSETVDYVDFCREKYGMT--PVQFVAEHDWLGPDVWFAHLVKLDAEEIALLAQTGTGIAHCPQSNGRLGSG 306 (457)
T ss_pred EEEeCCCHHHHHHHHHHhCCC--HHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHHcCCeEEECchhhhhhccc
Confidence 999999999999999999975 99999999999999999999999999998 99999999864
No 7
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=100.00 E-value=1.3e-40 Score=304.59 Aligned_cols=270 Identities=22% Similarity=0.284 Sum_probs=225.2
Q ss_pred EEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCCCCccccc
Q 022028 28 IVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWL 107 (304)
Q Consensus 28 ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~~~~~~~l 107 (304)
++++|...+++++++|+|+||+|++|++..+.....+ .+.++||++|++|+|||||+|+|++++.+||...+.++.+|+
T Consensus 14 ~~~~d~~~~~~~~g~V~v~~g~I~~vG~~~~~~~~~~-~~~~viD~~g~~v~PGlVn~H~Hl~~~~~rg~~~~~~l~~wl 92 (429)
T cd01303 14 LELVEDALRVVEDGLIVVVDGNIIAAGAAETLKRAAK-PGARVIDSPNQFILPGFIDTHIHAPQYANIGSGLGEPLLDWL 92 (429)
T ss_pred ccccCCcEEEECCeEEEEECCEEEEeCchhhhhhhcC-CCceEEcCCCCEEecceeeeeecccccccccccCCCcHHHHH
Confidence 4566777788999999999999999998654321112 246899999999999999999999999999987788999999
Q ss_pred cccccCccCC-CChHHHHHHHHHHHHHHHhcCcceeecCCCC---CHHHHHHHHHHcCCeEEeecccccCCCCCCCCccc
Q 022028 108 HDRIWPYESN-MTEEDSYISTLLCGIELIHSGVTCFAEAGGQ---HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAV 183 (304)
Q Consensus 108 ~~~~~~~~~~-~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~---~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~ 183 (304)
...+|+.+.. .++++.+..++.++.+++++||||++++... ..+..++++.+.|+|.++++..++... +....
T Consensus 93 ~~~~~~~e~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~~~~~---~~~~~ 169 (429)
T cd01303 93 ETYTFPEEAKFADPAYAREVYGRFLDELLRNGTTTACYFATIHPESTEALFEEAAKRGQRAIAGKVCMDRNA---PEYYR 169 (429)
T ss_pred HhhhhHHHHhcCCHHHHHHHHHHHHHHHHhCCceEEEeecccChhHHHHHHHHHHHhCCeEEEeeeeecCCC---Ccccc
Confidence 8877777665 5778888899999999999999999998643 345778889999999999887765421 22222
Q ss_pred CChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhC-CeeeEEecCChhhHHHHHHhcCCCCC
Q 022028 184 RTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK-TGIHMHVAEIPYENQVVMDTRKVDHG 262 (304)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~-~~~~~H~~E~~~~~~~~~~~~g~~~~ 262 (304)
....+.++...++++.+... .+.+...++|+.+++++++.++++.++|++++ +++++|++|+..+.+.+++.+|...+
T Consensus 170 ~~~~~~~~~~~~~i~~~~~~-~~~v~~~~~p~~~~~~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g~~~~ 248 (429)
T cd01303 170 DTAESSYRDTKRLIERWHGK-SGRVKPAITPRFAPSCSEELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFPGARD 248 (429)
T ss_pred cCHHHHHHHHHHHHHHHhCc-CCceEEEEecCcCCcCCHHHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcCCCCC
Confidence 23455667778888888764 46788899999999999999999999999999 99999999999999999999983235
Q ss_pred HHHHHHHhCCCCCCeeEEEeccCCcchhc-----------ccccccccccc
Q 022028 263 TVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAVH 302 (304)
Q Consensus 263 ~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~~ 302 (304)
+++++++.|+|+++++++||+++++++++ ||.||.+|+..
T Consensus 249 p~~~l~~~G~l~~~~~l~H~~~l~~~~~~~l~~~g~~v~~~P~sn~~l~~g 299 (429)
T cd01303 249 YLDVYDKYGLLTEKTVLAHCVHLSEEEFNLLKERGASVAHCPTSNLFLGSG 299 (429)
T ss_pred HHHHHHHCCCCCCCcEEEeCCCCCHHHHHHHHHcCCEEEECccchhhhccC
Confidence 99999999999999999999999999987 99999998764
No 8
>PRK09228 guanine deaminase; Provisional
Probab=100.00 E-value=2.8e-40 Score=302.24 Aligned_cols=277 Identities=22% Similarity=0.266 Sum_probs=225.3
Q ss_pred ccEEEEccEEE-ecC-------CCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccch
Q 022028 19 STMILHNAVIV-TMD-------KESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTS 90 (304)
Q Consensus 19 ~~~li~~~~ii-~~~-------~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~ 90 (304)
+.+++++..+. +.. +..+++++++|+|+||||++|++..+....++ .+.++||++|++|+|||||+|+|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~I~~g~I~~Vg~~~~~~~~~~-~~~~viD~~g~lv~PGlVn~H~H~~ 80 (433)
T PRK09228 2 TTKAYRGRLLHFTADPAEVDDEDALRYIEDGLLLVEDGRIVAAGPYAELRAQLP-ADAEVTDYRGKLILPGFIDTHIHYP 80 (433)
T ss_pred ceEEEEEEEEccCCCccccCCCCcEEEECCeEEEEECCEEEEEcChHHhhhhcC-CCCeEEeCCCCEEecceeccccccc
Confidence 44566666555 222 34568899999999999999998654332222 1358999999999999999999999
Q ss_pred hhhhhcccCCCCccccccccccCccCC-CChHHHHHHHHHHHHHHHhcCcceeecCCCC---CHHHHHHHHHHcCCeEEe
Q 022028 91 QQLAKGIADDVDLMTWLHDRIWPYESN-MTEEDSYISTLLCGIELIHSGVTCFAEAGGQ---HVSEMAKAVELLGLRACL 166 (304)
Q Consensus 91 ~s~~~g~~~~~~~~~~l~~~~~~~~~~-~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~---~~~~~~~~~~~~gir~~~ 166 (304)
++..+|.. +.++.+|+...+|+.+.. .++++.+..++.++.+++++||||++|+... ..+.+.+++.+.|+|.++
T Consensus 81 ~~~~~g~~-~~~l~~wl~~~~~~~e~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~GiR~~~ 159 (433)
T PRK09228 81 QTDMIASY-GEQLLDWLNTYTFPEERRFADPAYAREVAEFFLDELLRNGTTTALVFGTVHPQSVDALFEAAEARNMRMIA 159 (433)
T ss_pred chhhccCC-chHHHHHHHhhhhHHHHHhCCHHHHHHHHHHHHHHHHhCCceEEEeccccCHHHHHHHHHHHHHcCCeEEe
Confidence 99888743 446889998877776654 4778889999999999999999999997543 246778889999999999
Q ss_pred ecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHh-CCeeeEEecC
Q 022028 167 VQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF-KTGIHMHVAE 245 (304)
Q Consensus 167 ~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~-~~~~~~H~~E 245 (304)
+..+++.+ .+........+.++..+++++++... +++++.++|+.+++++++.++++.++|+++ ++++++|++|
T Consensus 160 ~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~~i~~Hl~E 234 (433)
T PRK09228 160 GKVLMDRN---APDGLRDTAESGYDDSKALIERWHGK--GRLLYAITPRFAPTSTPEQLEAAGALAREHPDVWIQTHLSE 234 (433)
T ss_pred eeeeecCC---CCcccccCHHHHHHHHHHHHHHHhCC--CCceEEEECCcCCcCCHHHHHHHHHHHHHCCCCceEEeecC
Confidence 88777642 12222234556677788888888653 578899999999999999999999999998 9999999999
Q ss_pred ChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------ccccccccccc
Q 022028 246 IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAVH 302 (304)
Q Consensus 246 ~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~~ 302 (304)
+..+.+.+.+.+|.+.++++++++.|+|+++++++||++++++|++ ||.||++|+..
T Consensus 235 ~~~e~~~~~~~~g~~~~~~~~l~~~G~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~~P~sn~~lg~g 302 (433)
T PRK09228 235 NLDEIAWVKELFPEARDYLDVYERYGLLGPRAVFAHCIHLEDRERRRLAETGAAIAFCPTSNLFLGSG 302 (433)
T ss_pred ChhHHHHHHHHcCCCCCHHHHHHHcCCCCCCeEEEeccCCCHHHHHHHHHcCCeEEECCccHHhhcCC
Confidence 9999999999998755689999999999999999999999999887 99999998764
No 9
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=100.00 E-value=6.1e-40 Score=302.55 Aligned_cols=274 Identities=27% Similarity=0.452 Sum_probs=229.0
Q ss_pred EEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcc--c
Q 022028 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI--A 98 (304)
Q Consensus 21 ~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~--~ 98 (304)
+++.++.|+++++..+++.+++|+|+||+|++|++..+.+ ..+.++||+.|++|+|||||+|+|++++.+++. .
T Consensus 4 ~i~~~~~v~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~----~~~~~vID~~g~~v~PGlVn~H~H~~~~~~~g~~~~ 79 (451)
T PRK08203 4 WIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALP----QPADEVFDARGHVVTPGLVNTHHHFYQTLTRALPAA 79 (451)
T ss_pred EEEeccEEEEeCCCceEeeccEEEEECCEEEEEeCCccCC----CCCCeEEeCCCCEEecceEeccccccchhccccccc
Confidence 4556679999887667889999999999999999875421 124689999999999999999999999999887 5
Q ss_pred CCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC-------CHHHHHHHHHHcCCeEEeecccc
Q 022028 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-------HVSEMAKAVELLGLRACLVQSTM 171 (304)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~-------~~~~~~~~~~~~gir~~~~~~~~ 171 (304)
.+.++.+|+.. .++....+++++++..++.++.+++++||||++|+... ..+..++++.+.|+|.+++...+
T Consensus 80 ~~~~~~~~~~~-~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~ 158 (451)
T PRK08203 80 QDAELFPWLTT-LYPVWARLTPEMVRVATQTALAELLLSGCTTSSDHHYLFPNGLRDALDDQIEAAREIGMRFHATRGSM 158 (451)
T ss_pred CCCcHHHHHHH-HhHHHHhCCHHHHHHHHHHHHHHHHhcCcCEEEcceeeccccccchHHHHHHHHHHcCCeEEEeccee
Confidence 67788899865 45666678999999999999999999999999997522 14567899999999999887665
Q ss_pred cCCC---CCCCCcccCChHHHHHHHHHHHHHHcCCCC-CCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCCh
Q 022028 172 DCGE---GLPASWAVRTTDDCIQSQKELYAKHHHAAD-GRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP 247 (304)
Q Consensus 172 d~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~ 247 (304)
+.+. +.++.......++.++..+++++++..... +++++.++++++++++++.+++++++|+++|+++++|++|+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~ 238 (451)
T PRK08203 159 SLGESDGGLPPDSVVEDEDAILADSQRLIDRYHDPGPGAMLRIALAPCSPFSVSRELMRESAALARRLGVRLHTHLAETL 238 (451)
T ss_pred ecCCccCCCCccccccCHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCH
Confidence 4321 122232233456777788888888865433 688999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------cccccccccc
Q 022028 248 YENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAV 301 (304)
Q Consensus 248 ~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~ 301 (304)
.+.+.+.+.+|.+ +++++.+.|+++++++++||++++++|++ ||.+|.+++.
T Consensus 239 ~~~~~~~~~~g~~--~~~~l~~~g~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~~P~~~~~l~~ 301 (451)
T PRK08203 239 DEEAFCLERFGMR--PVDYLEDLGWLGPDVWLAHCVHLDDAEIARLARTGTGVAHCPCSNMRLAS 301 (451)
T ss_pred HHHHHHHHHhCCC--HHHHHHHcCCCCCCeEEEEEeCCCHHHHHHHHhcCCeEEECcHHhhhhcc
Confidence 9999999989985 99999999999999999999999999987 9999988874
No 10
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=100.00 E-value=1.7e-39 Score=299.27 Aligned_cols=273 Identities=34% Similarity=0.567 Sum_probs=233.0
Q ss_pred EEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCC
Q 022028 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (304)
Q Consensus 21 ~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~ 100 (304)
++|+|++|+++++. ..+++++|+|+||+|++|++..++ ....++||++|++|+|||||+|+|+.++..++...+
T Consensus 3 ~~i~~~~vi~~~~~-~~~~~g~V~I~dg~I~~vg~~~~~-----~~~~~vID~~G~~vlPGlId~H~H~~~~~~~g~~~~ 76 (445)
T PRK07228 3 ILIKNAGIVTMNAK-REIVDGDVLIEDDRIAAVGDRLDL-----EDYDDHIDATGKVVIPGLIQGHIHLCQTLFRGIADD 76 (445)
T ss_pred EEEEccEEEecCCC-cEecccEEEEECCEEEEecCCccc-----CcCCeEEeCCCCEEecCEEecccCCccccceeccCC
Confidence 78999999998754 456899999999999999986432 125689999999999999999999999888888777
Q ss_pred CCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC-CHHHHHHHHHHcCCeEEeecccccCCCCCCC
Q 022028 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-HVSEMAKAVELLGLRACLVQSTMDCGEGLPA 179 (304)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~-~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~ 179 (304)
.++.+|+...+++.+..+++++.+..++.++.++|++||||++|+.+. ......+++.+.|+|.+.++.+++.+.. .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv~d~~~~~~~~~~~~a~~~~g~r~~~~~~~~~~~~~-~p 155 (445)
T PRK07228 77 LELLDWLKDRIWPLEAAHDAESMYYSALLGIGELIESGTTTIVDMESVHHTDSAFEAAGESGIRAVLGKVMMDYGDD-VP 155 (445)
T ss_pred CCHHHHHHhhhhhhhhhCCHHHHHHHHHHHHHHHHhcCceEEEccccccChHHHHHHHHHcCCeEEEecceecCCcC-CC
Confidence 889999988888888889999999999999999999999999998743 3567788999999999998888775421 12
Q ss_pred CcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCC
Q 022028 180 SWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV 259 (304)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~ 259 (304)
........+.+++..++++.+.....+.+...++|+...+++++.+++++++|+++|+++++|+.|+..+.+.+++.+|.
T Consensus 156 ~~~~~~~~~~l~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g~ 235 (445)
T PRK07228 156 EGLQEDTEASLAESVRLLEKWHGADNGRIRYAFTPRFAVSCTEELLRGVRDLADEYGVRIHTHASENRGEIETVEEETGM 235 (445)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCC
Confidence 22223456777888889988865545667777888888889999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------ccccccccccc
Q 022028 260 DHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAVH 302 (304)
Q Consensus 260 ~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~~ 302 (304)
+ +++++++.|+++++++++||+++++++++ ||.+|..++..
T Consensus 236 ~--~~~~l~~~g~~~~~~~l~H~~~~~~~~~~~~~~~g~~v~~~P~~~~~~~~~ 287 (445)
T PRK07228 236 R--NIHYLDEVGLTGEDLILAHCVWLDEEEREILAETGTHVTHCPSSNLKLASG 287 (445)
T ss_pred C--HHHHHHHCCCCCCCcEEEEEecCCHHHHHHHHHcCCeEEEChHHhhhcccc
Confidence 5 99999999999999999999999999987 99999887653
No 11
>PRK06380 metal-dependent hydrolase; Provisional
Probab=100.00 E-value=2.5e-39 Score=295.93 Aligned_cols=260 Identities=31% Similarity=0.507 Sum_probs=221.8
Q ss_pred EEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCC
Q 022028 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (304)
Q Consensus 21 ~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~ 100 (304)
++|+|++|++++.. ..+.+++|+|+||+|++|++..+ .+.++||++|++|+|||||+|+|+.++.+||..++
T Consensus 3 ~li~~~~v~~~~~~-~~~~~~~v~i~~g~I~~ig~~~~-------~~~~viD~~g~~v~PG~Vd~H~Hl~~~~~rg~~~~ 74 (418)
T PRK06380 3 ILIKNAWIVTQNEK-REILQGNVYIEGNKIVYVGDVNE-------EADYIIDATGKVVMPGLINTHAHVGMTASKGLFDD 74 (418)
T ss_pred EEEEeeEEEECCCC-ceeeeeeEEEECCEEEEecCCCC-------CCCEEEECCCCEEccCEEeeccCCCccccCCcccC
Confidence 68999999997643 35568999999999999998532 14589999999999999999999999999998888
Q ss_pred CCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCCCHHHHHHHHHHcCCeEEeecccccCCCCCCCC
Q 022028 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPAS 180 (304)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~ 180 (304)
.++.+|+.. .+++...+++++++..++.++.+++++||||++|+. ...+.+.+++.+.|+|.+++...++... ...
T Consensus 75 ~~l~~~~~~-~~~~~~~~~~e~~~~~~~~~~~e~l~~G~Tt~~d~~-~~~~~~~~a~~~~G~r~~~~~~~~~~~~--~~~ 150 (418)
T PRK06380 75 VDLEEFLMK-TFKYDSKRTREGIYNSAKLGMYEMINSGITAFVDLY-YSEDIIAKAAEELGIRAFLSWAVLDEEI--TTQ 150 (418)
T ss_pred CCHHHHHHH-HHhhhhcCCHHHHHHHHHHHHHHHHhcCCeEEEccc-cChHHHHHHHHHhCCeEEEecccccCCc--ccc
Confidence 899999987 678878899999999999999999999999999986 3456778999999999999877765321 011
Q ss_pred cccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCC
Q 022028 181 WAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVD 260 (304)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~ 260 (304)
....++...++++++.. .+++.+.++++++++++++.+++++++|+++|+++++|++|+..+...+.+++|.+
T Consensus 151 -----~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~ 223 (418)
T PRK06380 151 -----KGDPLNNAENFIREHRN--EELVTPSIGVQGIYVANDETYLKAKEIAEKYDTIMHMHLSETRKEVYDHVKRTGER 223 (418)
T ss_pred -----cchHHHHHHHHHHHhcC--CCCeEEEEECCCCccCCHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHhCCC
Confidence 11234456666776653 36788999999999999999999999999999999999999988888788888985
Q ss_pred CCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------cccccccccc
Q 022028 261 HGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAV 301 (304)
Q Consensus 261 ~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~ 301 (304)
+++++++.|+++++++++||++++++|++ ||.||.+++.
T Consensus 224 --~ie~~~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P~sn~~l~~ 273 (418)
T PRK06380 224 --PVEHLEKIGFLNSKLIAAHCVWATYHEIKLLSKNGVKVSWNSVSNFKLGT 273 (418)
T ss_pred --HHHHHHHCCCCCCCeEEEEeecCCHHHHHHHHHcCCEEEECHHHHHhhcc
Confidence 99999999999999999999999999987 9999999876
No 12
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=100.00 E-value=5.7e-39 Score=293.94 Aligned_cols=266 Identities=35% Similarity=0.592 Sum_probs=229.0
Q ss_pred ccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhccc
Q 022028 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (304)
Q Consensus 19 ~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~ 98 (304)
++++|+|++|++++. ..+.+++|+|+||+|++|++..+. .+.++||+.|++|+|||||+|+|+.++.++|..
T Consensus 2 ~~~~~~~~~i~~~~~--~~~~~~~v~v~~g~I~~i~~~~~~------~~~~~id~~g~~v~PG~vd~H~H~~~~~~~g~~ 73 (430)
T PRK06038 2 ADIIIKNAYVLTMDA--GDLKKGSVVIEDGTITEVSESTPG------DADTVIDAKGSVVMPGLVNTHTHAAMTLFRGYA 73 (430)
T ss_pred CCEEEEccEEEECCC--CeeeccEEEEECCEEEEecCCCCC------CCCEEEeCCCCEEecCeeecccCcchhhhhhcc
Confidence 357899999998763 356788999999999999986321 245899999999999999999999999999987
Q ss_pred CCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCCCHHHHHHHHHHcCCeEEeecccccCCCCCC
Q 022028 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLP 178 (304)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~gir~~~~~~~~d~g~~~~ 178 (304)
.+.++.+|+....++....+++++++..++.++.+++++|+||++|+. .+.+...+++.+.|+|.+.+....+.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~-~~~~~~~~a~~~~GiR~~~~~~~~d~~~--- 149 (430)
T PRK06038 74 DDLPLAEWLNDHIWPAEAKLTAEDVYAGSLLACLEMIKSGTTSFADMY-FYMDEVAKAVEESGLRAALSYGMIDLGD--- 149 (430)
T ss_pred CCCCHHHHHHhhhhhchhcCCHHHHHHHHHHHHHHHHhcCceeEEccc-cCHHHHHHHHHHhCCeEEEEchhccCCC---
Confidence 778999999887777777889999999999999999999999999987 4566778889999999987765544321
Q ss_pred CCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcC
Q 022028 179 ASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRK 258 (304)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g 258 (304)
.......++...++++.+.....+.+...++|+++++++++++++++++|+++|+++++|+.|+..+...+.+.+|
T Consensus 150 ----~~~~~~~l~~~~~~i~~~~~~~~g~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~G 225 (430)
T PRK06038 150 ----DEKGEAELKEGKRFVKEWHGAADGRIKVMYGPHAPYTCSEEFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQYG 225 (430)
T ss_pred ----ccchHHHHHHHHHHHHHhcCCCCCceEEEEeCCcCccCCHHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHhC
Confidence 1224456777888888887655678888999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------ccccccccccc
Q 022028 259 VDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAVH 302 (304)
Q Consensus 259 ~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~~ 302 (304)
.+ +++++++.|+|+++++++||++++++|++ ||.+|..++..
T Consensus 226 ~~--~i~~l~~~g~l~~r~~~~H~~~l~~~~~~~la~~g~~v~~~P~~n~~~~~~ 278 (430)
T PRK06038 226 MC--SVNYLDDIGFLGPDVLAAHCVWLSDGDIEILRERGVNVSHNPVSNMKLASG 278 (430)
T ss_pred CC--HHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHhcCCEEEEChHHhhhhccC
Confidence 85 99999999999999999999999999987 99999988754
No 13
>PRK08418 chlorohydrolase; Provisional
Probab=100.00 E-value=2.7e-39 Score=293.44 Aligned_cols=266 Identities=19% Similarity=0.244 Sum_probs=211.1
Q ss_pred EEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCC
Q 022028 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (304)
Q Consensus 21 ~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~ 100 (304)
++|+|++|++++....++++++|.|+ |+|++|++..+....++ +.++||+.|++|+|||||+|+|+.++.+||..++
T Consensus 2 ~~i~~~~v~t~~~~~~~~~~~~v~v~-~~I~~ig~~~~~~~~~~--~~~vid~~g~~v~PG~Vn~H~H~~~~~~rg~~~~ 78 (408)
T PRK08418 2 KIIGASYIFTCDENFEILEDGAVVFD-DKILEIGDYENLKKKYP--NAKIQFFKNSVLLPAFINPHTHLEFSANKTTLDY 78 (408)
T ss_pred EEEEccEEEecCCCCceeeccEEEEC-CEEEEecCHHHHHhhCC--CCcEEecCCcEEccCccccccchhhhhhccccCC
Confidence 57899999997755567899999999 99999998644322222 3468999999999999999999999999998777
Q ss_pred CCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCCCHHHHHHHHHHcCCeEEeecccccCCCCCCCC
Q 022028 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPAS 180 (304)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~ 180 (304)
.++.+|+...+++.+ .+++++.+..++.++.+++++||||+.|+... ....+++.+.|+|.+++...++.. ..
T Consensus 79 ~~~~~wl~~~~~~~~-~l~~~~~~~~~~~~~~E~l~~GtTtv~d~~~~--~~~~~a~~~~GiR~~~~~~~~~~~----~~ 151 (408)
T PRK08418 79 GDFIPWLGSVINHRE-DLLEKCKGALIQQAINEMLKSGVGTIGAISSF--GIDLEICAKSPLRVVFFNEILGSN----AS 151 (408)
T ss_pred CchHHHHHHHhhhhh-hcCHHHHHHHHHHHHHHHHhcCceEEEEeecc--hhhHHHHHhcCCeEEEEeeeeCCC----cc
Confidence 788999987665553 47788888899999999999999999988642 233688899999998876554421 11
Q ss_pred cccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCC-
Q 022028 181 WAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV- 259 (304)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~- 259 (304)
+. ....+...+.++.......++++..++|+++++|+++.++++.++|+++++++++|++|+..|++.+.+.+|.
T Consensus 152 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~aph~~~t~s~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~~ 227 (408)
T PRK08418 152 AV----DELYQDFLARFEESKKFKSKKFIPAIAIHSPYSVHPILAKKALQLAKKENLLVSTHFLESKAEREWLEESKGWF 227 (408)
T ss_pred ch----hhhHHHHHHHHHhhhcccCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCch
Confidence 11 1111111122222211234678999999999999999999999999999999999999999999999998883
Q ss_pred -------------CCCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------ccccccccccc
Q 022028 260 -------------DHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAVH 302 (304)
Q Consensus 260 -------------~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~~ 302 (304)
..+|++|++..| +++++++||++++++|++ ||.||.+||+.
T Consensus 228 ~~~~~~~~~~~~~~~~pv~~l~~~g--~~~~~~~H~~~~~~~di~~la~~g~~v~~cP~sn~~lg~g 292 (408)
T PRK08418 228 KKFFEKFLKEPKPLYTPKEFLELFK--GLRTLFTHCVYASEEELEKIKSKNASITHCPFSNRLLSNK 292 (408)
T ss_pred hhhhhhhcccccccCCHHHHHHHhC--CCCeEEEecccCCHHHHHHHHHcCCcEEECHhHHHHhcCC
Confidence 125999999887 679999999999999998 99999999875
No 14
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=100.00 E-value=2.7e-39 Score=295.35 Aligned_cols=270 Identities=29% Similarity=0.481 Sum_probs=231.5
Q ss_pred ccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhccc
Q 022028 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (304)
Q Consensus 19 ~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~ 98 (304)
.++++++..++..+++.. ++++++.|+||||+.|++..+.+ .+.++||++|++|+|||||+|+|++++.++|..
T Consensus 2 ~~~~i~~~~~~~~d~~~~-~~~~~~~i~~g~I~~ig~~~~~~-----~~~~~iD~~~~lv~Pgfvn~H~H~~~t~~~g~~ 75 (421)
T COG0402 2 TMLLIRGDLLLTNDPEGR-IEDGDLVIEDGKIVAIGANAEGP-----PDEEVIDAKGKLVLPGFVNAHTHLDQTLLRGLA 75 (421)
T ss_pred cceeeeCcEEeecCcccc-eeeeeEEEcCCEEEEeCCcCCCC-----CCceeecCCCCEeccCccccccchHHHHHhhhh
Confidence 457788998888755433 67899999999999999876531 357899999999999999999999999999998
Q ss_pred CCCCccccccccccCccCC-CChHHHHHHHHHHHHHHHhcCcceeecCCCC---CHHHHHHHHHHcCCeEEeecccccCC
Q 022028 99 DDVDLMTWLHDRIWPYESN-MTEEDSYISTLLCGIELIHSGVTCFAEAGGQ---HVSEMAKAVELLGLRACLVQSTMDCG 174 (304)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~-~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~---~~~~~~~~~~~~gir~~~~~~~~d~g 174 (304)
.+.++..|+.+.+|+.+.. +++++++..++.++.+++++|+|++..+... ......+++.+.|+|.+.+..+++.+
T Consensus 76 ~~~~l~~wl~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~t~~~~~~~~~~~~~~~~~~a~~~~g~r~~~~~~~~~~~ 155 (421)
T COG0402 76 DDLPLLEWLERYVWPREARLLTEEDLYARALLALLEMLRNGTTTARTHVDVVAESADAAFEAALEVGLRAVLGPVLQDVA 155 (421)
T ss_pred cccchHHHHHHHHhHHHhhcCCHHHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHHHHHhCCeeEeeeccccCC
Confidence 8777999999989888777 7888999999999999999999997655432 23457889999999999999888754
Q ss_pred CCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHH
Q 022028 175 EGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVM 254 (304)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~ 254 (304)
++..... ..+. ++..+++++++...+ ++.++++|+++++++++.++.+.++++++|+++++|++|+..+.+.++
T Consensus 156 --~p~~~~~-~~~~-~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~ 229 (421)
T COG0402 156 --FPDPGAE-TDEE-LEETEELLREAHGLG--RDVVGLAPHFPYTVSPELLESLDELARKYGLPVHIHLAETLDEVERVL 229 (421)
T ss_pred --CCccccc-chHH-HHHHHHHHHHHhcCC--CeeEEEecCCCCCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHH
Confidence 2222222 1222 677889999988753 788899999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------ccccccccccc
Q 022028 255 DTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAVH 302 (304)
Q Consensus 255 ~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~~ 302 (304)
+.+|.+ ++++++..|+++++++++||+|+++.|+. ||.||++|++.
T Consensus 230 ~~~g~~--~~~~~~~~g~l~~~~~~~H~~~~~~~e~~~l~~~g~~v~~cP~sN~~L~sG 286 (421)
T COG0402 230 EPYGAR--PVERLDLLGLLGSHTLLAHCVHLSEEELELLAESGASVVHCPRSNLKLGSG 286 (421)
T ss_pred hhcCCC--HHHHHHHcCCCCCCeEEEEeccCCHHHHHHHhhCCCeEEECcchhccccCC
Confidence 988985 99999999999999999999999999998 99999999986
No 15
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=100.00 E-value=9.9e-39 Score=292.00 Aligned_cols=265 Identities=28% Similarity=0.486 Sum_probs=225.6
Q ss_pred cEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccC
Q 022028 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (304)
Q Consensus 20 ~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~ 99 (304)
+++|+|++|++++. ....+++|.|+||+|++|++.... + +.++||+.|++|+|||||+|+|++++.+||...
T Consensus 2 ~~~i~~~~i~~~~~--~~~~~~~i~i~~g~I~~v~~~~~~----~--~~~~id~~~~~v~Pg~vd~H~H~~~~~~rg~~~ 73 (424)
T PRK08393 2 SILIKNGYVIYGEN--LKVIRADVLIEGNKIVEVKRNINK----P--ADTVIDASGSVVSPGFINAHTHSPMVLLRGLAD 73 (424)
T ss_pred eEEEECcEEEeCCC--CceecceEEEECCEEEEecCCCCC----C--CCeEEeCCCCEEccCeeeeccCcchHhhhhccC
Confidence 37899999999763 345678999999999999875421 2 457999999999999999999999999999888
Q ss_pred CCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCCCHHHHHHHHHHcCCeEEeecccccCCCCCCC
Q 022028 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPA 179 (304)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~ 179 (304)
+.++.+|+....|+....+++++++..++.++.+++++|+||++|+. ...+...+++.+.|+|.+++....+.. .+
T Consensus 74 ~~~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~-~~~~~~~~a~~~~G~r~~~~~~~~~~~---~~ 149 (424)
T PRK08393 74 DVPLMEWLQNYIWPRERKLKRKDIYWGAYLGLLEMIKSGTTTFVDMY-FHMEEVAKATLEVGLRGYLSYGMVDLG---DE 149 (424)
T ss_pred CCCHHHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCceEEeccc-cCHHHHHHHHHHhCCeEEEeceEecCC---Cc
Confidence 88999999887888777799999999999999999999999999987 556788899999999998876544321 11
Q ss_pred CcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCC
Q 022028 180 SWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV 259 (304)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~ 259 (304)
. .....++...+.++.+.....+.+...++|+.+++++++++++++++|+++++++++|++|+..+.+.+.+.+|.
T Consensus 150 ~----~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~ 225 (424)
T PRK08393 150 E----KREKEIKETEKLMEFIEKLNSPRVHFVFGPHAPYTCSLALLKWVREKAREWNKLITIHLSETMDEIKQIREKYGK 225 (424)
T ss_pred c----chHHHHHHHHHHHHHHhcCCCCceEEEEeCCcCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCc
Confidence 1 223445556666666666556678888999999999999999999999999999999999999999999999997
Q ss_pred CCCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------ccccccccccc
Q 022028 260 DHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAVH 302 (304)
Q Consensus 260 ~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~~ 302 (304)
+ +++++++.|+|+++++++||++++++|++ ||.||.+++..
T Consensus 226 ~--~~~~l~~~G~l~~~~~~~H~~~l~~~~l~~la~~g~~v~~~P~sn~~lg~g 277 (424)
T PRK08393 226 S--PVVLLDEIGFLNEDVIAAHGVWLSSRDIRILASAGVTVAHNPASNMKLGSG 277 (424)
T ss_pred C--HHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHhcCCEEEECHHHHHhhccC
Confidence 5 99999999999999999999999999988 99999998864
No 16
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=100.00 E-value=5.4e-38 Score=285.77 Aligned_cols=260 Identities=21% Similarity=0.314 Sum_probs=214.8
Q ss_pred ceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCCCCccccccccccCcc
Q 022028 36 RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYE 115 (304)
Q Consensus 36 ~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~ 115 (304)
+++++++|+|+||||++|++..+....++ .+.++||++|++|+|||||+|+|++++..+| ..+.++..|+....++.+
T Consensus 2 ~~~~~~~V~V~~g~I~~Vg~~~~~~~~~~-~~~~viD~~g~~v~PGlId~H~Hl~~~~~~g-~~~~~~~~~~~~~~~~~~ 79 (401)
T TIGR02967 2 EYFEDGLLVVENGRIVAVGDYAELKETLP-AGVEIDDYRGHLIMPGFIDTHIHYPQTEMIA-SYGEQLLEWLEKYTFPTE 79 (401)
T ss_pred eEEeceEEEEECCEEEEecCcchhhhccC-CCCeEEeCCCCEEecceeecccCchhhhhcc-cCCchHHHHHhhCcCccc
Confidence 45688999999999999998654322222 2468999999999999999999999988887 456678899987666665
Q ss_pred CC-CChHHHHHHHHHHHHHHHhcCcceeecCCCCC---HHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHH
Q 022028 116 SN-MTEEDSYISTLLCGIELIHSGVTCFAEAGGQH---VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQ 191 (304)
Q Consensus 116 ~~-~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~---~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~ 191 (304)
.. .++++.+..++.++.+++++||||++|++..+ .+...+++.+.|+|.+.+...++.. .+ ..........++
T Consensus 80 ~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~d~~--~~-~~~~~~~~~~~~ 156 (401)
T TIGR02967 80 ARFADPDHAEEVAEFFLDELLRNGTTTALVFATVHPESVDALFEAALKRGMRMIAGKVLMDRN--AP-DYLRDTAESSYD 156 (401)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCcEEEeccccCHHHHHHHHHHHHHCCCeEEEeeeeecCC--CC-cccccCHHHHHH
Confidence 54 47888899999999999999999999987443 3467888999999998887776622 12 111223456667
Q ss_pred HHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHh-CCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHh
Q 022028 192 SQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF-KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKI 270 (304)
Q Consensus 192 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~-~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~ 270 (304)
..+++++++.. .+.++++++|+.+++++++.++++.++|+++ |+++++|++|+..+.+.+.+.+|...++++++++.
T Consensus 157 ~~~~~i~~~~~--~g~i~~~~~~~~~~~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~l~~~ 234 (401)
T TIGR02967 157 ESKALIERWHG--KGRLLYAVTPRFAPTSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFPEAKDYLDVYDHY 234 (401)
T ss_pred HHHHHHHHHhC--cCCceEEEECCcCCcCcHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcCCCCcHHHHHHHC
Confidence 78888888765 3678899999999999999999999999999 99999999999999999999998865579999999
Q ss_pred CCCCCCeeEEEeccCCcchhc-----------ccccccccccc
Q 022028 271 EFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAVH 302 (304)
Q Consensus 271 g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~~ 302 (304)
|+|+++++++||+++++++++ ||.||.+++..
T Consensus 235 g~lg~~~~~~H~~~~~~~~~~~l~~~g~~v~~~P~~~~~~~~g 277 (401)
T TIGR02967 235 GLLGRRSVFAHCIHLSDEECQRLAETGAAIAHCPTSNLFLGSG 277 (401)
T ss_pred CCCCCCeEEEecccCCHHHHHHHHHcCCeEEEChHHHHHhccC
Confidence 999999999999999999987 99999988754
No 17
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=100.00 E-value=5.3e-38 Score=286.39 Aligned_cols=252 Identities=18% Similarity=0.206 Sum_probs=204.7
Q ss_pred ceeeeeeE-EEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccC-----CCCccccccc
Q 022028 36 RVFRNGGV-FVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD-----DVDLMTWLHD 109 (304)
Q Consensus 36 ~~~~~~~I-~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~-----~~~~~~~l~~ 109 (304)
++.++++| +|+||||++|++... .++||+.|++|+|||||+|+|++++.+||..+ +.++.+|+.
T Consensus 6 ~~~~~~~i~~v~~g~I~~Vg~~~~---------~~~iD~~g~lv~PGfVn~H~Hl~~~~~rg~~~~~~~~~~~l~~w~~- 75 (418)
T cd01313 6 GWERNVRIEVDADGRIAAVNPDTA---------TEAVALLGGALLPGMPNLHSHAFQRAMAGLTEYRGSAADSFWTWRE- 75 (418)
T ss_pred ceecCeEEEEeCCCeEEEecCCCC---------CcccccCCCeeccCccccCccHHHHHhcccccccCCCCCChhhHHH-
Confidence 67889999 999999999997532 24699999999999999999999999999765 467888985
Q ss_pred cccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC--------------CHHHHHHHHHHcCCeEEeecccccCCC
Q 022028 110 RIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------------HVSEMAKAVELLGLRACLVQSTMDCGE 175 (304)
Q Consensus 110 ~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~--------------~~~~~~~~~~~~gir~~~~~~~~d~g~ 175 (304)
..++....++++++|..++.++.+++++||||++|+... ..+...+++.+.|+|.++++.+++...
T Consensus 76 ~~~~~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~GiR~~~~~~~~~~~~ 155 (418)
T cd01313 76 LMYRFAARLTPEQIEAIARQLYIEMLLAGITAVGEFHYVHHDPDGTPYADPAELAQRVIAAASDAGIGITLLPVLYARAG 155 (418)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCEEEEeeeeccCCCCCccCChhhhHHHHHHHHHHhCCeEEeeeeEEeccC
Confidence 456677789999999999999999999999999986421 135678899999999998877665321
Q ss_pred CCCCC-c-----ccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhh
Q 022028 176 GLPAS-W-----AVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYE 249 (304)
Q Consensus 176 ~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~ 249 (304)
..... . ......+.++..++.++.+.. .+.+..+++|+++++++++.++++.++|++ |+++++|++|+..+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~s~e~l~~~~~~a~~-g~~i~~H~~e~~~e 232 (418)
T cd01313 156 FGGPAPNPGQRRFINGYEDFLGLLEKALRAVKE--HAAARIGVAPHSLRAVPAEQLAALAALASE-KAPVHIHLAEQPKE 232 (418)
T ss_pred CCCCCCchhhhhhcccHHHHHHHHHHHhhhhcc--CCceEEEEccCCCCCCCHHHHHHHHHHHhc-CCceEEEeCCCHHH
Confidence 11111 0 011123333444444444432 367889999999999999999999999999 99999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------ccccccccccc
Q 022028 250 NQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAVH 302 (304)
Q Consensus 250 ~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~~ 302 (304)
.+.+++.+|.+ +++++++.|+++++++++||++++++|++ ||.||+++++.
T Consensus 233 ~~~~~~~~g~~--~i~~l~~~g~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~~P~sn~~lg~g 294 (418)
T cd01313 233 VDDCLAAHGRR--PVELLLDHGHLDARWCLVHATHLTDNETLLLGRSGAVVGLCPTTEANLGDG 294 (418)
T ss_pred HHHHHHHcCCC--HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHcCCEEEECCCchhhccCC
Confidence 99999999985 99999999999999999999999999987 99999999864
No 18
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=100.00 E-value=6.5e-38 Score=281.81 Aligned_cols=240 Identities=16% Similarity=0.201 Sum_probs=196.4
Q ss_pred CEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHH
Q 022028 48 DRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYIST 127 (304)
Q Consensus 48 g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~ 127 (304)
|+|++||+..+....++ +.+++|+.|++|+|||||+|+|+.++.+|+..++.++.+|+...+ +....+++++.|..+
T Consensus 1 ~~I~aVG~~~~~~~~~~--~~~v~d~~g~~v~PGlVnaH~H~~~~~~rg~~~~~~~~~wl~~~~-~~~~~~~~e~~~~~a 77 (381)
T cd01312 1 DKILEVGDYEKLEKRYP--GAKHEFFPNGVLLPGLINAHTHLEFSANVAQFTYGRFRAWLLSVI-NSRDELLKQPWEEAI 77 (381)
T ss_pred CeEEEECChHHHHhhcC--CCeEEecCCcEEecCccccccccchhccccccCCCchHHHHHHHH-HHHHhcChHHHHHHH
Confidence 69999998655433333 468999999999999999999999999998777788999997643 555678899999999
Q ss_pred HHHHHHHHhcCcceeecCCCCCHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCC
Q 022028 128 LLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGR 207 (304)
Q Consensus 128 ~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (304)
+.++.|++++||||+.|++. ..+ ..+++.+.|+|.+++..+++..+ ..+ .+..+...+.++++....+++
T Consensus 78 ~~~~~E~l~~G~Tt~~d~~~-~~~-~~~a~~~~GiR~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~ 147 (381)
T cd01312 78 RQGIRQMLESGTTSIGAISS-DGS-LLPALASSGLRGVFFNEVIGSNP---SAI-----DFKGETFLERFKRSKSFESQL 147 (381)
T ss_pred HHHHHHHHHhCCeEEEEecC-CHH-HHHHHHHcCCcEEEEEeeECCCC---chh-----hhhHHHHHHHHHHhhccCccc
Confidence 99999999999999999873 333 78889999999999988876331 111 111222223333332223578
Q ss_pred eEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhc------------------CCCCCHHHHHHH
Q 022028 208 IRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTR------------------KVDHGTVTFLDK 269 (304)
Q Consensus 208 i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~------------------g~~~~~~~~l~~ 269 (304)
++++++|+++++++++.++.+.++|+++++++++|++|+..+.+.+++.+ |. +++++|++
T Consensus 148 v~~~~~p~a~~~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~g~--~pv~~l~~ 225 (381)
T cd01312 148 FIPAISPHAPYSVHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLA--TAIDFLDM 225 (381)
T ss_pred eEEEECCCCCcccCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccccccCCC--CHHHHHHH
Confidence 99999999999999999999999999999999999999999999887654 55 49999999
Q ss_pred hCCCCCCeeEEEeccCCcchhc-----------ccccccccccc
Q 022028 270 IEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAVH 302 (304)
Q Consensus 270 ~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~~ 302 (304)
.|+|+++++++||++++++|++ ||.||.+++..
T Consensus 226 ~g~L~~~~~~~H~~~l~~~~~~~l~~~g~~v~~~P~sn~~lg~g 269 (381)
T cd01312 226 LGGLGTRVSFVHCVYANLEEAEILASRGASIALCPRSNRLLNGG 269 (381)
T ss_pred cCCCCCCcEEEECCcCCHHHHHHHHHcCCeEEECcchhhhhcCC
Confidence 9999999999999999999998 99999998753
No 19
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=100.00 E-value=6.9e-37 Score=284.14 Aligned_cols=273 Identities=20% Similarity=0.297 Sum_probs=216.4
Q ss_pred cEEEEccEEEecCCCC-ceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhccc
Q 022028 20 TMILHNAVIVTMDKES-RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (304)
Q Consensus 20 ~~li~~~~ii~~~~~~-~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~ 98 (304)
.++|+|++|++.++.. .++++++|+|+||+|++|++... ..+.++||+.|++|+|||||+|+|+.++..++..
T Consensus 2 ~~li~~~~v~~~d~~~~~~~~~~~VlVe~g~I~~Vg~~~~------~~~~~viD~~g~~vlPGlVdaH~Hl~~~~~~~~~ 75 (488)
T PRK06151 2 RTLIKARWVLGFDDGDHRLLRDGEVVFEGDRILFVGHRFD------GEVDRVIDAGNALVGPGFIDLDALSDLDTTILGL 75 (488)
T ss_pred eEEEEccEEEEEcCCCCeEEeCcEEEEECCEEEEecCCCC------CCCCeEEeCCCCEEecCEEeeecccchhhhhccc
Confidence 5789999999877643 47899999999999999998532 1135799999999999999999999764433222
Q ss_pred CCCCccccccccccCc-------cCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC----------CHHHHHHHHHHcC
Q 022028 99 DDVDLMTWLHDRIWPY-------ESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ----------HVSEMAKAVELLG 161 (304)
Q Consensus 99 ~~~~~~~~l~~~~~~~-------~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~----------~~~~~~~~~~~~g 161 (304)
.+ ...|+...+|+. ...++++++|..++.++.++|++||||++|+... ..+..++++.+.|
T Consensus 76 ~~--~~~~~~~~~~~~~~~~~~~~~~~t~e~~~~~a~~~~~e~L~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~a~~~~G 153 (488)
T PRK06151 76 DN--GPGWAKGRVWSRDYVEAGRREMYTPEELAFQKRYAFAQLLRNGITTAMPIASLFYRQWAETYAEFAAAAEAAGRLG 153 (488)
T ss_pred cc--chhHHhcccCchhhhhcchhhcCCHHHHHHHHHHHHHHHHhcCeeEEehhhhhhccccccccchHHHHHHHHHHcC
Confidence 11 125655444442 1358899999999999999999999999986421 2356778889999
Q ss_pred CeEEeecccccCCCCC------CCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHh
Q 022028 162 LRACLVQSTMDCGEGL------PASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF 235 (304)
Q Consensus 162 ir~~~~~~~~d~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~ 235 (304)
+|.++++.+++.+... .+.+......+.+++.+++++.+...+.+.+++.++|+.+++++++++++++++|+++
T Consensus 154 iR~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~i~~~~~p~~~~~~s~e~l~~~~~~A~~~ 233 (488)
T PRK06151 154 LRVYLGPAYRSGGSVLEADGSLEVVFDEARGLAGLEEAIAFIKRVDGAHNGLVRGMLAPDRIETCTVDLLRRTAAAAREL 233 (488)
T ss_pred CeEEecchhccCccccccCCCCCccccchhHHHHHHHHHHHHHHhhcccCCceEEEEcCCCCCCCCHHHHHHHHHHHHHC
Confidence 9999887665422111 1111112234556778888888877677889999999999999999999999999999
Q ss_pred CCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCc---------chhc-----------cccc
Q 022028 236 KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH---------TEVN-----------CTFG 295 (304)
Q Consensus 236 ~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~---------~di~-----------~p~s 295 (304)
|+++++|++|+..+.+.+.+.+|.+ +++++++.|+++++++++||+++++ +|++ ||.+
T Consensus 234 g~~v~~H~~e~~~~~~~~~~~~g~~--~~~~~~~~g~l~~r~~l~H~~~l~~~~~~~~~~~~~~~~la~~g~~v~~~P~~ 311 (488)
T PRK06151 234 GCPVRLHCAQGVLEVETVRRLHGTT--PLEWLADVGLLGPRLLIPHATYISGSPRLNYSGGDDLALLAEHGVSIVHCPLV 311 (488)
T ss_pred CCcEEEEECCchHHHHHHHHHcCCC--HHHHHHHcCCCCCCcEEEEEEEcCCccccccCCHHHHHHHHhcCCEEEECchh
Confidence 9999999999999999999999975 9999999999999999999999999 8887 8999
Q ss_pred ccccccc
Q 022028 296 NFKYAVH 302 (304)
Q Consensus 296 N~~l~~~ 302 (304)
|.+++..
T Consensus 312 ~~~~g~~ 318 (488)
T PRK06151 312 SARHGSA 318 (488)
T ss_pred hhhhccc
Confidence 9887753
No 20
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=100.00 E-value=1e-37 Score=287.12 Aligned_cols=265 Identities=17% Similarity=0.174 Sum_probs=208.6
Q ss_pred ccEEEEccEEEecCCCCceeeeeeEEEe-CCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcc
Q 022028 19 STMILHNAVIVTMDKESRVFRNGGVFVV-QDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (304)
Q Consensus 19 ~~~li~~~~ii~~~~~~~~~~~~~I~I~-~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~ 97 (304)
+.+.++|+++- + ++.++++|+|+ ||||++|++.... + ... +..|++|+|||||+|+|++++.+||.
T Consensus 2 ~~~~~~~~~~~--~---~~~~~~~i~I~~~g~I~~vg~~~~~----~-~~~---~~~g~lvlPGfVn~H~H~~~~~~rg~ 68 (455)
T TIGR02022 2 TVYWAERALLP--D---GWAEGVRIAVAADGRILAIETGVPA----A-PGA---ERLSGPLLPGLANLHSHAFQRAMAGL 68 (455)
T ss_pred cchhHHhccCC--C---ccccCceEEEecCCEEEEecCCCCc----c-ccc---ccCCCEEccCCcccCcchhhHhhcCC
Confidence 34567788773 2 36678899999 9999999985431 1 122 23588999999999999999999997
Q ss_pred cC-----CCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC--------------CHHHHHHHHH
Q 022028 98 AD-----DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------------HVSEMAKAVE 158 (304)
Q Consensus 98 ~~-----~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~--------------~~~~~~~~~~ 158 (304)
.. +.++++|+. .+|+....++++++|..++.++.+++++||||++|+... ..+.++++++
T Consensus 69 ~~~~~~~~~~l~~w~~-~~~~~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~ 147 (455)
T TIGR02022 69 AEVAGSGGDSFWTWRE-LMYRFVDRLTPEQLQAIARQLYVEMLEAGFTRVGEFHYLHHAPDGTPYADPAEMAERIAAAAA 147 (455)
T ss_pred cccccCCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCEEEeeeeecccCCCccccchhhhHHHHHHHHH
Confidence 64 247888975 567777789999999999999999999999999986421 1467889999
Q ss_pred HcCCeEEeecccccCCC--CCCCCc----ccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHH
Q 022028 159 LLGLRACLVQSTMDCGE--GLPASW----AVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMA 232 (304)
Q Consensus 159 ~~gir~~~~~~~~d~g~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a 232 (304)
+.|+|..+++.+++... +.++.. .....++..+..+++.+.+.. .+.+.+.++|+++++++++.++++++ +
T Consensus 148 e~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~s~e~l~~~~~-a 224 (455)
T TIGR02022 148 DAGIGLTLLPVFYAHSGFGGAAPNPGQRRFIHDVERFARLVEVLRRELAA--QPAAVLGLAPHSLRAVTPEQLAAVLQ-A 224 (455)
T ss_pred HhCCeEEeeeeeeecCCCCCCCCcccchhhccCHHHHHHHHHHHHHHhcc--CCceEEEEecCCCCcCCHHHHHHHHH-H
Confidence 99999988876654321 122210 111233344444444444432 35688889999999999999999999 8
Q ss_pred HHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------cccccccccc
Q 022028 233 REFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAV 301 (304)
Q Consensus 233 ~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~ 301 (304)
+++|+++++|++|+..+.+.+.+.+|.+ +++++++.|+|+++++++||++++++|++ ||.||.++++
T Consensus 225 ~~~g~~v~~H~~e~~~e~~~~~~~~G~~--~v~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P~sn~~lg~ 302 (455)
T TIGR02022 225 SDRQAPVHIHVAEQQKEVDDCLAWSGRR--PVEWLLDHGPVDARWCLVHATHLTDEETALLARSGAVAGLCPTTEANLGD 302 (455)
T ss_pred HhCCCceEEEECCChHHHHHHHHHhCCC--HHHHHHHcCCCCCCEEEEEeecCCHHHHHHHHHcCCeEEEChhhhccccC
Confidence 8999999999999999999999999985 99999999999999999999999999998 9999999986
Q ss_pred c
Q 022028 302 H 302 (304)
Q Consensus 302 ~ 302 (304)
.
T Consensus 303 g 303 (455)
T TIGR02022 303 G 303 (455)
T ss_pred C
Confidence 4
No 21
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=100.00 E-value=6.7e-37 Score=282.27 Aligned_cols=265 Identities=17% Similarity=0.189 Sum_probs=210.6
Q ss_pred cccEEEEccEEEecCCCCceeeeeeEEEeC-CEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhc
Q 022028 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQ-DRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (304)
Q Consensus 18 ~~~~li~~~~ii~~~~~~~~~~~~~I~I~~-g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g 96 (304)
|.+++++++.+. + .++++++|+|+| |||++|++... + . .++..|++|+|||||+|+|+.++.+||
T Consensus 2 ~~~~~~~~~~~~--~---~~~~~~~v~i~~~grI~~vg~~~~-----~-~---~~~~~g~~vlPGlVn~H~H~~~~~~rg 67 (456)
T PRK09229 2 MTTLFAERALLP--D---GWARNVRLTVDADGRIAAVEPGAA-----P-A---GAERLAGPVLPGMPNLHSHAFQRAMAG 67 (456)
T ss_pred chhHHHHHhhCC--C---ccccCcEEEEecCCeEEEecCCCC-----C-c---cccccCcEEccCcccccccHhhHhhcC
Confidence 445566677663 3 267889999999 99999998542 1 1 234589999999999999999999999
Q ss_pred ccCC-----CCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC--------------CHHHHHHHH
Q 022028 97 IADD-----VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------------HVSEMAKAV 157 (304)
Q Consensus 97 ~~~~-----~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~--------------~~~~~~~~~ 157 (304)
...+ .++.+|+. .+|+....+++++.+..++.++.++|++||||+.|+... ..+..++++
T Consensus 68 ~~~~~~~~~~~l~~w~~-~~~~~~~~~~~e~~~~~a~~~~~e~L~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~ 146 (456)
T PRK09229 68 LTEVRGPPQDSFWSWRE-LMYRFALRLTPDQLEAIARQLYVEMLEAGYTSVGEFHYLHHDPDGTPYADPAEMALRIVAAA 146 (456)
T ss_pred cccccCCCCCChHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHHhhCCcEEEeeeeeccCCCCCccCChHHHHHHHHHHH
Confidence 7642 56778975 457777789999999999999999999999999986421 136778999
Q ss_pred HHcCCeEEeecccccCCC--CCCCC----cccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHH
Q 022028 158 ELLGLRACLVQSTMDCGE--GLPAS----WAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDM 231 (304)
Q Consensus 158 ~~~gir~~~~~~~~d~g~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~ 231 (304)
.+.|+|.++++.+++... +.++. ......+..++..+++.+.+.. .++++++++|+++++++++++++++++
T Consensus 147 ~e~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~s~e~l~~~~~~ 224 (456)
T PRK09229 147 RAAGIGLTLLPVLYAHSGFGGQPPNPGQRRFINDPDGFLRLLEALRRALAA--LPGARLGLAPHSLRAVTPDQLAAVLAL 224 (456)
T ss_pred HHcCCEEEeceeeeecCCCCCCCCchhhcccccCHHHHHHHHHHHHHhhcC--CCceEEEEeCCCCCCCCHHHHHHHHHH
Confidence 999999998876665321 11211 0112333444444455554443 368899999999999999999999999
Q ss_pred HHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------ccccccccc
Q 022028 232 AREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYA 300 (304)
Q Consensus 232 a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~ 300 (304)
| ++|+++++|++|+..+...+++.+|.+ +++++++.|+++++++++||++++++|++ ||.||.+++
T Consensus 225 A-~~g~~i~~H~~e~~~e~~~~~~~~g~~--~~~~l~~~g~l~~~~~l~H~~~l~~~d~~~la~~g~~v~~~P~sn~~lg 301 (456)
T PRK09229 225 A-APDGPVHIHIAEQTKEVDDCLAWSGAR--PVEWLLDHAPVDARWCLVHATHLTDAETARLARSGAVAGLCPTTEANLG 301 (456)
T ss_pred h-cCCCceEEEeCCCHHHHHHHHHHcCCC--HHHHHHHcCCCCCCeEEEeeccCCHHHHHHHHHcCCeEEECchhhhhhc
Confidence 9 999999999999999999999999985 99999999999999999999999999998 999999988
Q ss_pred cc
Q 022028 301 VH 302 (304)
Q Consensus 301 ~~ 302 (304)
+.
T Consensus 302 ~g 303 (456)
T PRK09229 302 DG 303 (456)
T ss_pred CC
Confidence 64
No 22
>PRK08204 hypothetical protein; Provisional
Probab=100.00 E-value=9e-36 Score=274.97 Aligned_cols=266 Identities=21% Similarity=0.304 Sum_probs=217.1
Q ss_pred cccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcc
Q 022028 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (304)
Q Consensus 18 ~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~ 97 (304)
|.+++|+|++|++.++..+++++++|+|++|+|++|++..+. + +.++||++|++|+|||||+|+|+.++..++.
T Consensus 1 ~~~~li~~~~v~~~~~~~~~~~~~~v~V~~g~I~~Vg~~~~~----~--~~~viD~~g~~v~PGlId~H~H~~~~~~~~~ 74 (449)
T PRK08204 1 MKRTLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIEA----P--DAEVVDARGMIVMPGLVDTHRHTWQSVLRGI 74 (449)
T ss_pred CCcEEEECcEEEecCCCCCccccceEEEECCEEEEecCCCCC----C--CCeEEeCCCCEEecCEEeeeeccchhhhccc
Confidence 456789999999977655678899999999999999986431 1 4579999999999999999999999988888
Q ss_pred cCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC-----CHHHHHHHHHHcCCeEEeeccccc
Q 022028 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----HVSEMAKAVELLGLRACLVQSTMD 172 (304)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~-----~~~~~~~~~~~~gir~~~~~~~~d 172 (304)
..+.++.+|+....++....+++++.+..++.++.++|++||||+++++.. .....++++.+.|+|.+++....+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~L~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~G~r~~~~~~~~~ 154 (449)
T PRK08204 75 GADWTLQTYFREIHGNLGPMFRPEDVYIANLLGALEALDAGVTTLLDWSHINNSPEHADAAIRGLAEAGIRAVFAHGSPG 154 (449)
T ss_pred cCCCcHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHhcCCeEEeecccccCChhHHHHHHHHHHHcCCeEEEEccccC
Confidence 777788889887767777889999999999999999999999999986532 345678888999999988776655
Q ss_pred CCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHH
Q 022028 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQV 252 (304)
Q Consensus 173 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~ 252 (304)
.++ .+......+.++..+++++++....++.+...++++++..++++.+++++++|+++|+++++|+.|+...
T Consensus 155 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~--- 227 (449)
T PRK08204 155 PSP----YWPFDSVPHPREDIRRVKKRYFSSDDGLLTLGLAIRGPEFSSWEVARADFRLARELGLPISMHQGFGPWG--- 227 (449)
T ss_pred CCC----CCCcchhhhhHHHHHHHHHhhccCCCCceEEEEecCCcccCCHHHHHHHHHHHHHcCCcEEEEEcCCCcc---
Confidence 432 2222233455566667777776655566777888888888899999999999999999999999988653
Q ss_pred HHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------ccccccccccc
Q 022028 253 VMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAVH 302 (304)
Q Consensus 253 ~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~~ 302 (304)
.+. .+++++.+.|+++++++++||++++++|++ ||.+|.+++.+
T Consensus 228 ----~~~--~~~~~l~~~g~~~~~~~i~H~~~~~~~~~~~la~~g~~v~~~P~~~~~~g~~ 282 (449)
T PRK08204 228 ----ATP--RGVEQLHDAGLLGPDLNLVHGNDLSDDELKLLADSGGSFSVTPEIEMMMGHG 282 (449)
T ss_pred ----cCC--CHHHHHHHCCCCCCCeEEEecCCCCHHHHHHHHHcCCCEEEChHHHhhhcCC
Confidence 122 389999999999999999999999999998 99999887753
No 23
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=100.00 E-value=1.9e-35 Score=270.14 Aligned_cols=270 Identities=36% Similarity=0.595 Sum_probs=222.7
Q ss_pred EEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCC
Q 022028 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (304)
Q Consensus 21 ~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~ 100 (304)
++|+|++|+++++ .+.+++++|+|+||||++|++..+.+ . +.+.++||++|++|+|||||+|+|+.++.+++...+
T Consensus 1 ~~i~~~~v~~~~~-~~~~~~~~v~i~~g~I~~ig~~~~~~--~-~~~~~viD~~g~~i~PGlid~H~Hl~~~~~~~~~~~ 76 (411)
T cd01298 1 ILIRNGTIVTTDP-RRVLEDGDVLVEDGRIVAVGPALPLP--A-YPADEVIDAKGKVVMPGLVNTHTHLAMTLLRGLADD 76 (411)
T ss_pred CeEEeeEEEEeCC-cceeecceEEEECCEEEEecCccccc--c-CCcCeEEeCCCCEEccCccccccchhhHHhhcccCC
Confidence 4789999999765 46788999999999999999865421 0 125689999999999999999999999988887666
Q ss_pred CCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCCCHHHHHHHHHHcCCeEEeecccccCCCCCCCC
Q 022028 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPAS 180 (304)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~ 180 (304)
.++.+|+....++.....++++++..++.++.+++.+||||++++.....+...+++.+.|+|..++..+++.....
T Consensus 77 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~~~--- 153 (411)
T cd01298 77 LPLMEWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFADMYFFYPDAVAEAAEELGIRAVLGRGIMDLGTED--- 153 (411)
T ss_pred CCHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHHHHhcCccEEECccccchHHHHHHHHHhCCeEEEEcceecCCCcc---
Confidence 77899998877776667888999999999999999999999999874332566777888899988776665432211
Q ss_pred cccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCC
Q 022028 181 WAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVD 260 (304)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~ 260 (304)
.......+++..++++++...+.+.++++++++.++.++++.++++++.|+++|+++.+|+.|+....+.+.+.+|..
T Consensus 154 --~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~ 231 (411)
T cd01298 154 --VEETEEALAEAERLIREWHGAADGRIRVALAPHAPYTCSDELLREVAELAREYGVPLHIHLAETEDEVEESLEKYGKR 231 (411)
T ss_pred --cccHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCccCCHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCC
Confidence 113445666777778777655567788889998888899999999999999999999999999998888888888875
Q ss_pred CCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------cccccccccc
Q 022028 261 HGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAV 301 (304)
Q Consensus 261 ~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~ 301 (304)
+++++.+.|+++.++.+.||+++++++++ ||.+|.+++.
T Consensus 232 --~~~~~~~~~~~~~~~~i~H~~~l~~~~~~~l~~~gi~~~~~p~~~~~~~~ 281 (411)
T cd01298 232 --PVEYLEELGLLGPDVVLAHCVWLTDEEIELLAETGTGVAHNPASNMKLAS 281 (411)
T ss_pred --HHHHHHHcCCCCCCeEEEEecCCCHHHHHHHHHcCCeEEEChHHhhhhhh
Confidence 89999999999999999999999999887 9999987753
No 24
>KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.7e-34 Score=245.35 Aligned_cols=269 Identities=23% Similarity=0.307 Sum_probs=222.0
Q ss_pred CCceeeeeeEEEeC-CEEEEecCChhhhhhh-----cCCCceEEeCCCCEeeccccccCccchhhhh-hcccCCCCcccc
Q 022028 34 ESRVFRNGGVFVVQ-DRIKAIGQSADILQQF-----SQMADQIIDLQSQILLPGFVNTHVHTSQQLA-KGIADDVDLMTW 106 (304)
Q Consensus 34 ~~~~~~~~~I~I~~-g~I~~i~~~~~~~~~~-----~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~-~g~~~~~~~~~~ 106 (304)
+..+.++..+.|.| |||+.|++......+. .-+..++++.+|.++||||||+|+|....+. .+..-+.++.+|
T Consensus 21 ~l~i~e~~sl~Vd~~GKi~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~mPGfVdtH~H~a~q~~~s~~g~d~pll~w 100 (439)
T KOG3968|consen 21 ELEILEGSSLGVDDTGKIVFIGKAYFDENKLKGEGVEKENTKIKLSSGHFLMPGFVDTHIHPAHQFAMSGAGTDMPLLQW 100 (439)
T ss_pred ceEEecCcceeecCCccEEEeeccccchhhhcccccccccceeeecCCcEEecceeecccchHhhhhhhccccCcHHHHH
Confidence 46677888889976 9999999865322111 1114588999999999999999999644433 455568899999
Q ss_pred ccccccCccCCCCh-HHHHHHHHHHHHHHHhcCcceeecCCCCCH---HHHHHHHHHcCCeEEeecccccCCCCCCCCcc
Q 022028 107 LHDRIWPYESNMTE-EDSYISTLLCGIELIHSGVTCFAEAGGQHV---SEMAKAVELLGLRACLVQSTMDCGEGLPASWA 182 (304)
Q Consensus 107 l~~~~~~~~~~~~~-e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~---~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~ 182 (304)
+..+.|+.+..++. |+.|..-...+.++|++|+||+..+...+. ..+++++.+.|+|+.++...++.+.. ++++.
T Consensus 101 l~~~~f~le~~~~~~e~~~q~~~~vv~~mL~~GTTt~~~f~~~~~~s~~ll~~~~~~~G~R~~igkv~m~~~~~-~~p~~ 179 (439)
T KOG3968|consen 101 LGKYTFPLEATFTNEEDARQVYQRVVKEMLRAGTTTVEYFSTLHLDSELLLARAAIRAGQRALIGKVCMDCNAH-AVPKG 179 (439)
T ss_pred hhcceeecchhhhhHHHHHHHHHHHHHHHHHcCceehhhhhccCchhHHHHHHHHHHhCCceeeeeehhccCCC-CCCcc
Confidence 99999999988887 677777788899999999999987765433 46789999999999999999987643 34444
Q ss_pred cCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCC
Q 022028 183 VRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHG 262 (304)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~ 262 (304)
....+..++..++++........+.+...+.|....+|+.++++.+.++|+.+++.+++|+.|...|++.+++.|+....
T Consensus 180 ~~~~E~si~~t~~~i~~~~~~~~~~~~~~vt~~fa~~c~k~v~~~l~~lak~~~l~~q~hIsen~~EI~~~~~ff~~~~~ 259 (439)
T KOG3968|consen 180 VETTEESIESTEDLIPKLEKLKREKVNPIVTPRFAASCSKGVFEELSKLAKYHNLHIQIHISENGKEIEAVKNFFPEKLS 259 (439)
T ss_pred chhHHHHHHHHHHHHHHHHhhccCCCCCcccccccCCCcchhHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHhhhhccc
Confidence 55667888888888887777666666666677767789999999999999999999999999999999999999997656
Q ss_pred HHHHHHHhCCCCCCeeEEEeccCCcchhc-----------cccccccccccC
Q 022028 263 TVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAVHQ 303 (304)
Q Consensus 263 ~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~~~ 303 (304)
+..-+++.|+|++.++++|+++|+++++. ||.||.+|++.+
T Consensus 260 y~~~yd~~~lL~~ktvlaH~~hl~d~ei~~l~k~g~svshCP~Sn~~L~sG~ 311 (439)
T KOG3968|consen 260 YTDVYDKGGLLTEKTVLAHLEHLSDEEIELLAKRGCSVSHCPTSNSILGSGI 311 (439)
T ss_pred chHHHHHhcccchHhHhhhheecCchhHHHHHhcCCceEECCcchhhhccCC
Confidence 88888899999999999999999999998 999999999875
No 25
>PRK07213 chlorohydrolase; Provisional
Probab=100.00 E-value=1.8e-32 Score=246.78 Aligned_cols=247 Identities=13% Similarity=0.187 Sum_probs=190.9
Q ss_pred EEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCC
Q 022028 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (304)
Q Consensus 21 ~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~ 100 (304)
++|+|++|++++. ..+.+++|+|++|+|.+|++.. + +.++||+.|++| |||||+|+|+..+.+||...+
T Consensus 2 ~li~~~~v~~~~~--~~~~~~~v~i~~g~I~~i~~~~------~--~~~~id~~g~~v-PGlvd~H~H~~~~~~rg~~~~ 70 (375)
T PRK07213 2 LVYLNGNFLYGED--FEPKKGNLVIEDGIIKGFTNEV------H--EGNVIDAKGLVI-PPLINAHTHIGDSSIKDIGIG 70 (375)
T ss_pred EEEEeeEEEeCCC--CceeeeEEEEECCEEEEeccCC------C--CCeEEeCCCCEe-cceeeeccccCchhhhcCCCC
Confidence 6799999998542 3456789999999999998641 1 457999999999 999999999999999998877
Q ss_pred CCccccccc---cccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCCC---HHHHHHHHHHcCCeEEeecccccCC
Q 022028 101 VDLMTWLHD---RIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH---VSEMAKAVELLGLRACLVQSTMDCG 174 (304)
Q Consensus 101 ~~~~~~l~~---~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~---~~~~~~~~~~~gir~~~~~~~~d~g 174 (304)
.++.+|+.. ..+.....+++++++..++.++.+++++||||++|+.... .+.+.+++.+.|+|..+. ...
T Consensus 71 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~~~~~~~~~~~~a~~~~~~r~~~~----~~~ 146 (375)
T PRK07213 71 KSLDELVKPPNGLKHKFLNSCSDKELVEGMKEGLYDMYNNGIKAFCDFREGGIKGINLLKKASSDLPIKPIIL----GRP 146 (375)
T ss_pred CCHHHHccCCCcchHHHHhcCCHHHHHHHHHHHHHHHHHcCCeEEEEhhhcChhHHHHHHHHHHcCCCceEEe----cCC
Confidence 788888642 1112235688999999999999999999999999964222 345677778888887521 100
Q ss_pred CCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHH
Q 022028 175 EGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVM 254 (304)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~ 254 (304)
... ..+...+..+..++. . .+++++++..++++.+++++++|+++++++++|++|+..+.+.+.
T Consensus 147 ----~~~---~~~~~~~~~~~~~~~----~-----~g~~~~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~ 210 (375)
T PRK07213 147 ----TEA---DENELKKEIREILKN----S-----DGIGLSGANEYSDEELKFICKECKREKKIFSIHAAEHKGSVEYSL 210 (375)
T ss_pred ----Ccc---cchhhHHHHHHHHHh----c-----ccccccccccCCHHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHH
Confidence 010 011222223333321 1 135666777889999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------ccccccccccc
Q 022028 255 DTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAVH 302 (304)
Q Consensus 255 ~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~~ 302 (304)
+.+|.+ +++++.+.|++ ++ .++||++++++|++ ||.||.+++..
T Consensus 211 ~~~G~~--~v~~~~~~G~~-~~-~i~H~~~~~~~~i~~la~~g~~v~~~P~sn~~l~~g 265 (375)
T PRK07213 211 EKYGMT--EIERLINLGFK-PD-FIVHATHPSNDDLELLKENNIPVVVCPRANASFNVG 265 (375)
T ss_pred HHcCCC--hHHHHHhcCCC-CC-EEEECCCCCHHHHHHHHHcCCcEEECCcchhhhccC
Confidence 999985 99999999997 67 58999999999998 99999998754
No 26
>PRK09230 cytosine deaminase; Provisional
Probab=99.97 E-value=7.2e-30 Score=232.94 Aligned_cols=246 Identities=13% Similarity=0.134 Sum_probs=176.4
Q ss_pred cccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcc
Q 022028 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (304)
Q Consensus 18 ~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~ 97 (304)
...++|+|+++++.. . ..+|.|+||+|.+|++..+.. ..+.++||++|++|+|||||+|+|+.++..++.
T Consensus 3 ~~~~li~~~~~~~~~---~---~~~i~i~~g~I~~i~~~~~~~----~~~~~~id~~g~~v~PGlid~H~H~~~~~~~~~ 72 (426)
T PRK09230 3 NALMTIKNARLPGKE---G---LWQITIEDGKISAIEPQSEAS----LEAGEVLDAEGGLAIPPFIEPHIHLDTTQTAGE 72 (426)
T ss_pred CceEEEECcEEcCCC---e---eEEEEEECCEEEEecCCCCCC----CCCCceEeCCCCEeccceeEEEEccccceecCC
Confidence 356889999998632 1 258999999999999864311 124579999999999999999999999888775
Q ss_pred c---CCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCCC------HHHHHHHHHHc------CC
Q 022028 98 A---DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH------VSEMAKAVELL------GL 162 (304)
Q Consensus 98 ~---~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~------~~~~~~~~~~~------gi 162 (304)
. .+.++.+|+... ++....+++++++..+..++.+++++|+|++.++.... .+.+.++.++. ++
T Consensus 73 ~~~~~~~~l~~~i~~~-~~~~~~~t~ed~~~~a~~~~~e~l~~GvTtvr~~~d~~~~~~~~~~a~~~~~~~~~~~~~~~i 151 (426)
T PRK09230 73 PNWNQSGTLFEGIERW-AERKALLTHEDVKQRAWQTLKWQIANGIQHVRTHVDVSDPTLTALKAMLEVKEEVAPWVDLQI 151 (426)
T ss_pred CccCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHcCcccEEeccccCCcchhHHHHHHHHHHHhhCcceEEE
Confidence 4 456788898763 55556688999999999999999999999998765321 13334444333 33
Q ss_pred eEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCC--CHHHHHHHHHHHHHhCCeee
Q 022028 163 RACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNA--TDRLLLETRDMAREFKTGIH 240 (304)
Q Consensus 163 r~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~e~l~~~~~~a~~~~~~~~ 240 (304)
+++....+++. ....+.++...+ ...+. ++..|+..++. +++.++.++++|+++|++++
T Consensus 152 ~a~~~~~~~~~----------~~~~~~l~~a~~-------~~~~~--vg~~p~~~~~~~~~~e~l~~~~~~A~~~g~~~~ 212 (426)
T PRK09230 152 VAFPQEGILSY----------PNGEALLEEALR-------LGADV--VGAIPHFEFTREYGVESLHKAFALAQKYDRLID 212 (426)
T ss_pred EeccCccccCC----------ccHHHHHHHHHH-------cCCCE--EeCCCCccccchhHHHHHHHHHHHHHHhCCCcE
Confidence 43222222211 011222222222 12222 34556666554 68899999999999999999
Q ss_pred EEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccC-------Ccchhc-----------ccccccccc
Q 022028 241 MHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV-------NHTEVN-----------CTFGNFKYA 300 (304)
Q Consensus 241 ~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l-------~~~di~-----------~p~sN~~l~ 300 (304)
+|++|+.++.....+ ++++++.+.| ++++++++||+++ ++++++ ||.||++|+
T Consensus 213 ~H~~E~~~~~~~~~~------~~~~~~~~~g-l~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~vv~cP~sn~~l~ 283 (426)
T PRK09230 213 VHCDEIDDEQSRFVE------TVAALAHREG-MGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVANPLVNIHLQ 283 (426)
T ss_pred EEECCCCCcchHHHH------HHHHHHHHhC-CCCCEEEEecCchhcCCHHHHHHHHHHHHHcCCeEEECcchhhhhc
Confidence 999999877653333 2899999999 6999999999999 455665 999999997
No 27
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=99.96 E-value=1e-27 Score=218.21 Aligned_cols=249 Identities=16% Similarity=0.109 Sum_probs=170.3
Q ss_pred EEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCCC
Q 022028 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDV 101 (304)
Q Consensus 22 li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~~ 101 (304)
+|+|++|+++. ..+++|+|+||+|++|++..+. +.+.++||++|++|+|||||+|+|+.++.+++...+.
T Consensus 1 ~~~~~~~~~~~-----~~~~~v~I~~g~I~~Vg~~~~~-----~~~~~vID~~g~~v~PGlId~H~H~~~~~~~~~~~~~ 70 (398)
T cd01293 1 LLRNARLADGG-----TALVDIAIEDGRIAAIGPALAV-----PPDAEEVDAKGRLVLPAFVDPHIHLDKTFTGGRWPNN 70 (398)
T ss_pred CeeeeEEeCCC-----ceEEEEEEECCEEEEEecCCCC-----CCCCceEeCCCCEEccCEeeeeeccCcccccCCCCCC
Confidence 37899999841 3788999999999999986542 1356899999999999999999999988888766555
Q ss_pred Ccccccccc--ccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC-------CHHHHHHHHHHcCCeEEeeccccc
Q 022028 102 DLMTWLHDR--IWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-------HVSEMAKAVELLGLRACLVQSTMD 172 (304)
Q Consensus 102 ~~~~~l~~~--~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~-------~~~~~~~~~~~~gir~~~~~~~~d 172 (304)
....|+... ..+....+++++.+..++.++.+++++||||++++... ..+...++.+..+.+.........
T Consensus 71 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (398)
T cd01293 71 SGGTLLEAIIAWEERKLLLTAEDVKERAERALELAIAHGTTAIRTHVDVDPAAGLKALEALLELREEWADLIDLQIVAFP 150 (398)
T ss_pred CccccHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHcChhheeeeecccccccchHHHHHHHHHHHhhccceEEEEecc
Confidence 444554221 11223567899999999999999999999999775431 123445555555544433221111
Q ss_pred CCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHH
Q 022028 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQV 252 (304)
Q Consensus 173 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~ 252 (304)
. ..... . +..+++++.+...+...+ .++.+.....++++.++++++.|+++|+++++|+.|...+...
T Consensus 151 ~-----~~~~~--~----~~~~~~v~~~~~~g~~~~-~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~ 218 (398)
T cd01293 151 Q-----HGLLS--T----PGGEELMREALKMGADVV-GGIPPAEIDEDGEESLDTLFELAQEHGLDIDLHLDETDDPGSR 218 (398)
T ss_pred C-----ccccC--C----CCHHHHHHHHHHhCCCEE-eCCCCCcCCccHHHHHHHHHHHHHHhCCCCEEEeCCCCCcchh
Confidence 0 00110 0 123344444433322222 2233333456789999999999999999999999998766443
Q ss_pred HHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCc---ch----hc-----------cccccccc
Q 022028 253 VMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH---TE----VN-----------CTFGNFKY 299 (304)
Q Consensus 253 ~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~---~d----i~-----------~p~sN~~l 299 (304)
..+. +++++.+.|++ +++.+.||+++++ ++ ++ ||.+|.++
T Consensus 219 ~~~~------~~~~~~~~g~~-~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~~p~s~~~l 276 (398)
T cd01293 219 TLEE------LAEEAERRGMQ-GRVTCSHATALGSLPEAEVSRLADLLAEAGISVVSLPPINLYL 276 (398)
T ss_pred HHHH------HHHHHHHhCCC-CCEEeeecchhhcCCHHHHHHHHHHHHHcCCeEEeCCCcchhh
Confidence 3331 67888899988 7899999999974 22 33 99999876
No 28
>PRK07572 cytosine deaminase; Validated
Probab=99.95 E-value=1.4e-26 Score=212.03 Aligned_cols=247 Identities=15% Similarity=0.126 Sum_probs=168.9
Q ss_pred cEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcc--
Q 022028 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI-- 97 (304)
Q Consensus 20 ~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~-- 97 (304)
+++|+|+++++.. ...+|.|+||+|++|++..+ ....++||++|++|+|||||+|+|+.++..++.
T Consensus 3 ~~~i~~~~i~~~~------~~~~i~i~~g~I~~v~~~~~------~~~~~~id~~g~~~~PG~id~h~h~~~~~~~~~~~ 70 (426)
T PRK07572 3 DLIVRNANLPDGR------TGIDIGIAGGRIAAVEPGLQ------AEAAEEIDAAGRLVSPPFVDPHFHMDATLSYGLPR 70 (426)
T ss_pred cEEEECeEECCCC------eeEEEEEECCEEEEecCCCC------CCcCceEeCCCCEEcccceehhhCcchhhccCCCC
Confidence 4689999998732 25689999999999987543 124579999999999999999999998876654
Q ss_pred -cCCCCccccccccccC-ccCCCChHHHHHHHHHHHHHHHhcCcceeecCCC---CC---HHHHHHHHHHcCCeEEeec-
Q 022028 98 -ADDVDLMTWLHDRIWP-YESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---QH---VSEMAKAVELLGLRACLVQ- 168 (304)
Q Consensus 98 -~~~~~~~~~l~~~~~~-~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~---~~---~~~~~~~~~~~gir~~~~~- 168 (304)
..+.++.+|+. +++ ....+++++++.+++.++.+++++|+|+++++.. .. ...+.+.....+.+..+..
T Consensus 71 ~~~~g~l~e~l~--~~~~~~~~~t~edl~~~a~~~~~e~l~~G~Ttvrd~~d~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 148 (426)
T PRK07572 71 VNASGTLLEGIA--LWGELKPLLTQEALVERALRYCDWAVARGLLAIRSHVDVCDPRLLAVEALLEVRERVAPYLDLQLV 148 (426)
T ss_pred CCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEeeccccCCCcccHHHHHHHHHHHhhccceEEEE
Confidence 24567778873 232 2234789999999999999999999999998632 11 1222232233333322111
Q ss_pred ccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCH--HHHHHHHHHHHHhCCeeeEEecCC
Q 022028 169 STMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATD--RLLLETRDMAREFKTGIHMHVAEI 246 (304)
Q Consensus 169 ~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--e~l~~~~~~a~~~~~~~~~H~~E~ 246 (304)
.+...|. + . .....+..++.++. +.+.+ +..|+...+++. +.++.++++|+++|+++++|++|+
T Consensus 149 a~~~~g~-~----~---~~~~~~~~~~~l~~----g~d~i--Gg~p~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~ 214 (426)
T PRK07572 149 AFPQDGV-L----R---SPGAVDNLERALDM----GVDVV--GGIPHFERTMADGAESVRLLCEIAAERGLRVDMHCDES 214 (426)
T ss_pred eccChhh-c----c---CccHHHHHHHHHHc----CCCEE--eCCCCCccccchHHHHHHHHHHHHHHcCCCeEEEECCC
Confidence 1111110 0 0 01122233444432 22233 223555544444 899999999999999999999999
Q ss_pred hhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcch-------hc-----------cccccccccc
Q 022028 247 PYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE-------VN-----------CTFGNFKYAV 301 (304)
Q Consensus 247 ~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~d-------i~-----------~p~sN~~l~~ 301 (304)
.++.....+. .++++.+.|+++ +++++||+++++.| ++ ||.+|++++.
T Consensus 215 ~~~~~~~~~~------~~~~~~~~G~~~-~v~~~H~~~l~~~~~~~~~~~~~~la~~g~~vv~~P~~n~~l~~ 280 (426)
T PRK07572 215 DDPLSRHIET------LAAETQRLGLQG-RVAGSHLTSMHSMDNYYVSKLIPLMAEAGVNAIANPLINITLQG 280 (426)
T ss_pred CChhHHHHHH------HHHHHHHhCCCC-CEEEEccchhhcCCHHHHHHHHHHHHHcCCeEEECchhhhhhcC
Confidence 8877665553 577888999988 89999999999855 43 9999998863
No 29
>PRK09356 imidazolonepropionase; Validated
Probab=99.95 E-value=1.6e-26 Score=210.90 Aligned_cols=260 Identities=15% Similarity=0.197 Sum_probs=167.6
Q ss_pred CcccEEEEccEEEecCCCC----ceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhh
Q 022028 17 SSSTMILHNAVIVTMDKES----RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQ 92 (304)
Q Consensus 17 ~~~~~li~~~~ii~~~~~~----~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s 92 (304)
||.+++|+|++|++++... +++++++|+|+||||.+|++..+.+. ..+.++||+.|++|+|||||+|+|++.+
T Consensus 1 ~~~~~li~~~~v~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~---~~~~~~iD~~g~~v~PG~id~H~Hl~~~ 77 (406)
T PRK09356 1 MMADLLWTNAQLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEADLPA---AYAAEVIDAGGKLVTPGLIDCHTHLVFG 77 (406)
T ss_pred CCceEEEECCEEEecCCCCccccccccCcEEEEECCEEEEEeCcccccc---ccCceEEECCCCEEeeceEecCCCcccC
Confidence 4566899999999876542 67889999999999999998654211 1135899999999999999999999876
Q ss_pred hhhcc-----cCCCCcccccccc--c---cCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC--C---HHHHHHHH
Q 022028 93 LAKGI-----ADDVDLMTWLHDR--I---WPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--H---VSEMAKAV 157 (304)
Q Consensus 93 ~~~g~-----~~~~~~~~~l~~~--~---~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~--~---~~~~~~~~ 157 (304)
..++. ..+.++.+|+... + +.....+++++++..++.++.+++++||||+.++... . ....+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~ 157 (406)
T PRK09356 78 GNRANEFELRLQGVSYEEIAAQGGGILSTVRATRAASEEELFAQALPRLDALLAEGVTTVEIKSGYGLDLETELKMLRVA 157 (406)
T ss_pred CCcHHHHHHHHCCCcHHHHHHhcCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCHHHHHHHHHHH
Confidence 54442 1223444443321 1 1123457889999999999999999999999875421 1 11233444
Q ss_pred HHc----CCeEEeecccccCCCCCCCCcccCChHHHHHHH-HHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHH
Q 022028 158 ELL----GLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQ-KELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMA 232 (304)
Q Consensus 158 ~~~----gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a 232 (304)
... +++... .+.+ +.++++... ...+..++.. .++++.+... +.+............+++++++++++|
T Consensus 158 ~~~~~~~~i~~~~--~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~~~A 231 (406)
T PRK09356 158 RRLGEEHPVDVVT--TFLG-AHAVPPEYK-GRPDAYIDLVCEEMLPAVAEE--GLADAVDVFCETGAFSVEQSERVLEAA 231 (406)
T ss_pred HHHhhhCCCceEe--eeee-cccCCcccc-CCHHHHHHHHHHHHhHHHHhc--CCcceEEEEecCCCCCHHHHHHHHHHH
Confidence 443 343321 1111 122333221 1223333332 2344443322 233322222333456899999999999
Q ss_pred HHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------cccccccccc
Q 022028 233 REFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAV 301 (304)
Q Consensus 233 ~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~ 301 (304)
+++|+++++|+.|.... ..+++..+.|.+ .+.||+++++++++ ||.+|.+++.
T Consensus 232 ~~~g~~v~~H~~~~~~~------------~~~~~~~~~~~~----~~~H~~~~~~~~~~~la~~g~~~~~~P~~~~~l~~ 295 (406)
T PRK09356 232 KALGLPVKIHAEQLSNL------------GGAELAAEYGAL----SADHLEYLDEAGIAAMAEAGTVAVLLPGAFYFLRE 295 (406)
T ss_pred HHCCCCEEEEEecccCC------------CHHHHHHHcCCc----EehHhhcCCHHHHHHHHHhCCEEEECccchhhcCc
Confidence 99999999999875321 145555555543 58899999999887 9999988864
No 30
>PRK14085 imidazolonepropionase; Provisional
Probab=99.94 E-value=9.4e-26 Score=203.87 Aligned_cols=253 Identities=17% Similarity=0.209 Sum_probs=162.0
Q ss_pred cEEEEc-cEEEecCCCC-----ceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhh
Q 022028 20 TMILHN-AVIVTMDKES-----RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQL 93 (304)
Q Consensus 20 ~~li~~-~~ii~~~~~~-----~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~ 93 (304)
.++|+| ++|+++++.. .+++++.|+|+||||++|++..+. +.+.++||++|++|+|||||+|+|+.++.
T Consensus 2 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~-----~~~~~~iD~~g~~v~PGlId~H~Hl~~~~ 76 (382)
T PRK14085 2 STLITNIGELVTNDPELGEGPLGVLRDAAVVVEGGRVAWVGPAADA-----PAADERVDAGGRAVLPGFVDSHSHLVFAG 76 (382)
T ss_pred cEEEEcccEEEcCCCcccCCCcccccCcEEEEECCEEEEEcCCccC-----CCCCeEEeCCCCEEecCeEecCcCccccC
Confidence 467999 5999987654 688999999999999999986432 12568999999999999999999998765
Q ss_pred hhccc--CCCCccccccccc---cCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC--CHHHHHHHHHHcCCeEEe
Q 022028 94 AKGIA--DDVDLMTWLHDRI---WPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--HVSEMAKAVELLGLRACL 166 (304)
Q Consensus 94 ~~g~~--~~~~~~~~l~~~~---~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~--~~~~~~~~~~~~gir~~~ 166 (304)
.|+.. ...+...|+...+ ++....+++++++..+..++.+++++|+||+++.+.. ......+..+..+ +...
T Consensus 77 ~r~~~~~~~~~~~~~~~~~i~~~~~~~~~~t~e~~~~~a~~~~~~~l~~G~Ttv~~~~~~~~~~~~~~~~~~~~~-~~~~ 155 (382)
T PRK14085 77 DRSAEFAARMAGEPYSAGGIRTTVAATRAASDEELRANVRRLVAEALRQGTTTVETKTGYGLTVEDEARSARIAA-EFTD 155 (382)
T ss_pred ChhHHHHhhhcCCCccCCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCceEEEcCCcCCCCHHHHHHHHHHHH-Hhhh
Confidence 55421 1111122222211 2334567899999999999999999999999987632 2333333333222 1111
Q ss_pred ecccccCCCCCCCCcccCChHHHHHHHH-HHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecC
Q 022028 167 VQSTMDCGEGLPASWAVRTTDDCIQSQK-ELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAE 245 (304)
Q Consensus 167 ~~~~~d~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E 245 (304)
..... .+..+++.+. ...+..++... ..+.... .....+++.... ...+++.++++++.|+++|+++.+|+.+
T Consensus 156 ~~~~~-g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~idi~~~~---~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 229 (382)
T PRK14085 156 EVTFL-GAHVVPPEYA-GDADEYVDLVCGPMLDAVA-PHARWIDVFCER---GAFDEDQSRRVLTAGRAAGLGLRVHGNQ 229 (382)
T ss_pred cceee-ccccCCcccC-CCHHHHHHHHHHHHHHHHH-HhCCeEEEEecC---CCCCHHHHHHHHHHHHHcCCCeEEEeCc
Confidence 11111 1111222211 23334443322 1111111 123445544332 2457899999999999999999999976
Q ss_pred ChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------ccccccccc
Q 022028 246 IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYA 300 (304)
Q Consensus 246 ~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~ 300 (304)
.... ..++++.+.|+++ +.||+++++++++ ||.+|+.++
T Consensus 230 ~~~~------------~~v~~~~~~g~~~----i~H~~~l~~~~~~~la~~gv~~~~~P~~~~~~~ 279 (382)
T PRK14085 230 LGPG------------PGVRLAVELGAAS----VDHCTYLTDADVDALAGSGTVATLLPGAEFSTR 279 (382)
T ss_pred ccCC------------hHHHHHHHcCCCc----HHHhCCCCHHHHHHHHHcCCEEEECcHHHHhcC
Confidence 3211 1467777777753 8899999999987 888887654
No 31
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=99.93 E-value=7.7e-25 Score=197.97 Aligned_cols=236 Identities=17% Similarity=0.186 Sum_probs=155.2
Q ss_pred eeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcc-----cCCCCcccccccc--c
Q 022028 39 RNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI-----ADDVDLMTWLHDR--I 111 (304)
Q Consensus 39 ~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~-----~~~~~~~~~l~~~--~ 111 (304)
++++|+|+||+|++|++..+.+ .+ .+.++||++|++|+|||||+|+|++.+..|+. .++.++.+|+... +
T Consensus 2 ~~~~v~i~~g~I~~vg~~~~~~-~~--~~~~~iD~~g~~v~PGlin~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (377)
T TIGR01224 2 EDAVILIHGGKIVWIGQLAALP-GE--EATEIIDCGGGLVTPGLVDPHTHLVFAGDRVNEFEMKLQGASYLEILAQGGGI 78 (377)
T ss_pred CceEEEEECCEEEEEechhhCC-cc--cCCeEEeCCCCEEcccEEecccCccccCCcHHHHHHHhCCCCHHHHHHhcCCh
Confidence 5789999999999999853221 11 15689999999999999999999988766652 3466888998652 2
Q ss_pred c---CccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCCC-----HHHHHHHH----HHcCCeEEeecccccCCCCCCC
Q 022028 112 W---PYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSEMAKAV----ELLGLRACLVQSTMDCGEGLPA 179 (304)
Q Consensus 112 ~---~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~-----~~~~~~~~----~~~gir~~~~~~~~d~g~~~~~ 179 (304)
+ +....+++++++..++.++.+++++||||+....... .....+++ .+.|++.... +.+ ...++.
T Consensus 79 ~~~~~~~~~~~~ed~~~~a~~~~~e~l~~Gvt~ve~~~~~g~~~~~~~~~~~a~~~~~~~~~i~~~~~--~~~-~~~~~~ 155 (377)
T TIGR01224 79 LSTVRATRAASEEELLKLALFRLKSMLRSGTTTAEVKSGYGLDLETELKMLRAAKALHEEQPVDVVTT--FLG-AHAVPP 155 (377)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHHHHHHHHhhCCCceEee--eee-cccCCc
Confidence 2 5556789999999999999999999999983321111 11233333 3455555432 111 111222
Q ss_pred CcccCChHHHHHHH-HHHHHHHcCCCCCCeEE--EEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHh
Q 022028 180 SWAVRTTDDCIQSQ-KELYAKHHHAADGRIRI--WFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT 256 (304)
Q Consensus 180 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~ 256 (304)
.... ..++.++.. +..++++... +.+.. .++++.. .+.+.+++++++|+++|+++++|+.|....
T Consensus 156 ~~~~-~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~--~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~------- 223 (377)
T TIGR01224 156 EFQG-RPDDYVDGICEELIPQVAEE--GLASFADVFCEAGV--FSVEQSRRILQAAQEAGLPVKLHAEELSNL------- 223 (377)
T ss_pred cccC-CHHHHHHHHHHHHHHHHHHh--CCCCeeEEEecCCC--cCHHHHHHHHHHHHHCCCCEEEEecCCCCC-------
Confidence 1111 122333322 2345544321 22222 2444444 357789999999999999999999885421
Q ss_pred cCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------cccccccccc
Q 022028 257 RKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAV 301 (304)
Q Consensus 257 ~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~ 301 (304)
..++++.+.|.+ .+.||+++++++++ ||.+|.+++.
T Consensus 224 -----~~~~~~~~~g~~----~~~H~~~~~~~~l~~la~~g~~~~~~P~~~~~l~~ 270 (377)
T TIGR01224 224 -----GGAELAAKLGAV----SADHLEHASDAGIKALAEAGTVAVLLPGTTFYLRE 270 (377)
T ss_pred -----CHHHHHHHcCCC----ccHHHhcCCHHHHHHHHhcCCEEEECchHHHhcCC
Confidence 146666666653 36799999999887 9999998764
No 32
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=99.91 E-value=2.2e-24 Score=185.43 Aligned_cols=185 Identities=15% Similarity=0.213 Sum_probs=140.5
Q ss_pred EeeccccccCccchhhhhhcccCCCCccccc---cccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC---CH
Q 022028 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWL---HDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ---HV 150 (304)
Q Consensus 77 iv~PG~ID~H~Hl~~s~~~g~~~~~~~~~~l---~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~---~~ 150 (304)
+|+|||||+|+|+.++.+||...+.++.+|+ ....|+.+..++++++|.+++.++.+++++||||++|+... ..
T Consensus 1 ~v~PG~vn~H~H~~~~~~rg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~ 80 (263)
T cd01305 1 ILIPALVNAHTHLGDSAIKEVGDGLPLDDLVAPPDGLKHRLLAQADDRELAEAMRKVLRDMRETGIGAFADFREGGVEGI 80 (263)
T ss_pred CccccceeccccHHHHHhhcCCCCCcHHHHhcCcccchHHHHHhCCHHHHHHHHHHHHHHHHhcCCeEEEEccCcchhHH
Confidence 5899999999999999999998888887765 33345667789999999999999999999999999998532 35
Q ss_pred HHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHH
Q 022028 151 SEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRD 230 (304)
Q Consensus 151 ~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~ 230 (304)
+.+.++.++.|+|. ..+++. + .. ++..+ ++ .+ +...++++++++++ ++++++
T Consensus 81 ~a~~~a~~~~g~r~---~~~~~~----~-~~-----~~~~~---~~-~~--------~~~~~~~~~~~~~~---l~~~~~ 132 (263)
T cd01305 81 ELLRRALGKLPVPF---EVILGR----P-TE-----PDDPE---IL-LE--------VADGLGLSSANDVD---LEDILE 132 (263)
T ss_pred HHHHHHHHhcCCCc---eEEecc----C-Cc-----chHHH---HH-Hh--------hcccccCCCCCccC---HHHHHH
Confidence 67888999999995 222221 1 11 01111 11 11 12246677777666 899999
Q ss_pred HHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------cccccccc
Q 022028 231 MAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKY 299 (304)
Q Consensus 231 ~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l 299 (304)
+|+++|+++++|++|...+. |. ++++++.+. +++. ++||+++++++++ ||.||.++
T Consensus 133 ~A~~~g~~v~~H~~e~~~~~-------g~--~~i~~~~~~---~~~~-i~H~~~l~~~~~~~la~~g~~v~~~P~sn~~l 199 (263)
T cd01305 133 LLRRRGKLFAIHASETRESV-------GM--TDIERALDL---EPDL-LVHGTHLTDEDLELVRENGVPVVLCPRSNLYF 199 (263)
T ss_pred HHHHCCCeeEEecCCCCCCC-------Cc--hhHHHHHhC---CCCE-EEEcCCCCHHHHHHHHHcCCcEEEChhhHHHh
Confidence 99999999999999987643 32 378888776 5564 7999999999998 99999988
Q ss_pred ccc
Q 022028 300 AVH 302 (304)
Q Consensus 300 ~~~ 302 (304)
+..
T Consensus 200 ~~g 202 (263)
T cd01305 200 GVG 202 (263)
T ss_pred CCC
Confidence 753
No 33
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=99.90 E-value=7.8e-23 Score=184.52 Aligned_cols=236 Identities=15% Similarity=0.185 Sum_probs=148.8
Q ss_pred EEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcc-----cCCCCcccccccc---cc--
Q 022028 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI-----ADDVDLMTWLHDR---IW-- 112 (304)
Q Consensus 43 I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~-----~~~~~~~~~l~~~---~~-- 112 (304)
|+|+||||++|++..+.+.. .+.+.++||++|++|+|||||+|+|++++..++. ..+..+.+|+... .+
T Consensus 1 i~i~~g~I~~ig~~~~~~~~-~~~~~~~iD~~G~~v~Pg~vn~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (371)
T cd01296 1 IAIRDGRIAAVGPAASLPAP-GPAAAEEIDAGGRAVTPGLVDCHTHLVFAGDRVDEFAARLAGASYEEILAAGGGILSTV 79 (371)
T ss_pred CEEECCEEEEEeCchhcccc-cCCCceEEECCCCEEecceeecCCCCcCCCCcHHHHHHHHCCCCHHHHHHcCCChHHHH
Confidence 57899999999986532100 0124589999999999999999999988765542 1345677787641 22
Q ss_pred CccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC-----CHHHHHHHHHHcCCe--EEeecccccCCCCCCCCcccCC
Q 022028 113 PYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----HVSEMAKAVELLGLR--ACLVQSTMDCGEGLPASWAVRT 185 (304)
Q Consensus 113 ~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~-----~~~~~~~~~~~~gir--~~~~~~~~d~g~~~~~~~~~~~ 185 (304)
+....+++++++..++.++.+++++|||++.++... ......+++.+.+.+ ..+...+.+ +..++.... .
T Consensus 80 ~~~~~~~~~d~~~~a~~~~~~~~~~Gvt~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~-~~~~p~~~~--~ 156 (371)
T cd01296 80 RATRAASEDELFASALRRLARMLRHGTTTVEVKSGYGLDLETELKMLRVIRRLKEEGPVDLVSTFLG-AHAVPPEYK--G 156 (371)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHHHHHHHHhhCCCceEeeeee-cccCCcccC--C
Confidence 344668899999999999999999999999873211 122345555555442 222222221 111222211 1
Q ss_pred hHHHHH-HHHHHHHHHcC-CCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCH
Q 022028 186 TDDCIQ-SQKELYAKHHH-AADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGT 263 (304)
Q Consensus 186 ~~~~~~-~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~ 263 (304)
....++ ..++.++.+.. .....+++ ..... ..+++.+++++++|+++|+++.+|+.|.... ..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~------------~~ 221 (371)
T cd01296 157 REEYIDLVIEEVLPAVAEENLADFCDV-FCEKG--AFSLEQSRRILEAAKEAGLPVKIHADELSNI------------GG 221 (371)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCEEEE-eecCC--ccCHHHHHHHHHHHHHCCCeEEEEEcCcCCC------------CH
Confidence 122222 23444444331 11122222 23322 2458899999999999999999999886421 13
Q ss_pred HHHHHHhCCCCCCeeEEEeccCCcchhc-----------cccccccccc
Q 022028 264 VTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFKYAV 301 (304)
Q Consensus 264 ~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~l~~ 301 (304)
++...+.|.. .+.||+++++++++ ||.+|.+++.
T Consensus 222 ~~~~~~~g~~----~i~H~~~~~~~~i~~la~~g~~v~~~P~~~~~l~~ 266 (371)
T cd01296 222 AELAAELGAL----SADHLEHTSDEGIAALAEAGTVAVLLPGTAFSLRE 266 (371)
T ss_pred HHHHHHcCCC----eeHHhcCCCHHHHHHHHHcCCeEEEChHHHHHhCC
Confidence 4544455543 47999999998876 9999987764
No 34
>PRK05985 cytosine deaminase; Provisional
Probab=99.89 E-value=2.6e-22 Score=182.20 Aligned_cols=236 Identities=15% Similarity=0.142 Sum_probs=150.9
Q ss_pred cccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcc
Q 022028 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (304)
Q Consensus 18 ~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~ 97 (304)
|++++|+|++|+++. ..+|.|+||+|++|++..+. ..+.++||++|++|+|||||+|+|+.....+..
T Consensus 1 ~~~~~i~~~~i~~~~-------~~~v~i~~g~i~~i~~~~~~-----~~~~~~id~~g~~v~Pg~iD~h~h~~~~~~~~~ 68 (391)
T PRK05985 1 MTDLLFRNVRPAGGA-------AVDILIRDGRIAAIGPALAA-----PPGAEVEDGGGALALPGLVDGHIHLDKTFWGDP 68 (391)
T ss_pred CCCEEEECcEECCCC-------eeEEEEECCEEEEecCCCCC-----CCCCcEEECCCCEEecceEeeEEccCccccCCc
Confidence 356789999999742 45899999999999986432 124579999999999999999999986543211
Q ss_pred cC----CCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC-------CHHHHHHHHHHcCCeEEe
Q 022028 98 AD----DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-------HVSEMAKAVELLGLRACL 166 (304)
Q Consensus 98 ~~----~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~-------~~~~~~~~~~~~gir~~~ 166 (304)
.. ...+.+++.... ....++.++++..+...+.+++++|+|+++++... ..+.+.++.+. .|..+
T Consensus 69 ~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~a~~~~~~~l~~G~t~vr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 144 (391)
T PRK05985 69 WYPNEPGPSLRERIANER--RRRAASGHPAAERALALARAAAAAGTTAMRSHVDVDPDAGLRHLEAVLAARET--LRGLI 144 (391)
T ss_pred cccCCCCCCHHHHHHHHH--HhhccchhHHHHHHHHHHHHHHhcCcceEEeeEccCCCcccchHHHHHHHHHH--hhCcc
Confidence 10 122233222110 01245667889999999999999999999876532 13345555333 33222
Q ss_pred ecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCC
Q 022028 167 VQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEI 246 (304)
Q Consensus 167 ~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~ 246 (304)
...+.+. ++......+ . ..+++++....+.+ +..++.|+.+..++++.+++++++|+++|+++++|++|+
T Consensus 145 ~~~~v~~----~~~g~~~~~-~----~~~ll~~~l~~g~~-~~gg~~p~~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~ 214 (391)
T PRK05985 145 DIQIVAF----PQSGVLSRP-G----TAELLDAALRAGAD-VVGGLDPAGIDGDPEGQLDIVFGLAERHGVGIDIHLHEP 214 (391)
T ss_pred cEEEEec----cCccccCCc-C----HHHHHHHHHHcCCC-EEeCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEeeCCC
Confidence 2222221 111111110 0 12333333332323 445567778888999999999999999999999999998
Q ss_pred hhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCC
Q 022028 247 PYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN 286 (304)
Q Consensus 247 ~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~ 286 (304)
.+....... ..++...+.|+.+ ++.+.||+.++
T Consensus 215 ~d~~~~~~~------~~~e~~~~~g~~~-~~~i~H~~~l~ 247 (391)
T PRK05985 215 GELGAFQLE------RIAARTRALGMQG-RVAVSHAFCLG 247 (391)
T ss_pred CCccHHHHH------HHHHHHHHhCCCC-CEehhhhhhhh
Confidence 764322222 1456666777744 78999999874
No 35
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=99.89 E-value=3.9e-22 Score=184.20 Aligned_cols=225 Identities=20% Similarity=0.219 Sum_probs=142.1
Q ss_pred EEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCC
Q 022028 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (304)
Q Consensus 21 ~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~ 100 (304)
++|+|++|++++ . +.+++|+|+||||++|++.... ..+.++||++|++|+|||||+|+|+.....
T Consensus 1 lli~~~~v~~~~---~-~~~~~i~I~~g~I~~ig~~~~~-----~~~~~viD~~g~~vlPGlID~H~H~~~~~~------ 65 (447)
T cd01314 1 LIIKNGTIVTAD---G-SFKADILIEDGKIVAIGPNLEA-----PGGVEVIDATGKYVLPGGIDPHTHLELPFM------ 65 (447)
T ss_pred CEEECCEEECCC---C-ceeeeEEEECCEEEEeeCCCCC-----CCCceEEECCCCEEecCEEecccccccccc------
Confidence 478999999854 2 3578999999999999875321 123589999999999999999999965210
Q ss_pred CCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCCCH-HHHHHHHHHcCCeEEeecccccCCCCCCC
Q 022028 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHV-SEMAKAVELLGLRACLVQSTMDCGEGLPA 179 (304)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~gir~~~~~~~~d~g~~~~~ 179 (304)
...++++++..++. ++.+||||++|+..... ....++.+....+. ......+.+....
T Consensus 66 ---------------~~~~~e~~~~~~~~----a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~- 124 (447)
T cd01314 66 ---------------GTVTADDFESGTRA----AAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKA-DGKSVIDYGFHMI- 124 (447)
T ss_pred ---------------CccCcchHHHHHHH----HHhCCCcEEEeCCCCCCCCCHHHHHHHHHHHh-cCCCcccEEEEEe-
Confidence 01235565555443 46799999999763211 22222222221111 1111222110000
Q ss_pred CcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhc--
Q 022028 180 SWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTR-- 257 (304)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~-- 257 (304)
......+.+++..++++ .+...++++++++..+.++++.++++++.|+++++++++|+ |+..+.+...+++
T Consensus 125 --~~~~~~~~~~~~~~l~~----~g~~~ik~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v~~H~-E~~~~~~~~~~~~~~ 197 (447)
T cd01314 125 --ITDWTDSVIEELPELVK----KGISSFKVFMAYKGLLMVDDEELLDVLKRAKELGALVMVHA-ENGDVIAELQKKLLA 197 (447)
T ss_pred --ecCCChHHHHHHHHHHH----cCCCEEEEEeccCCCCCCCHHHHHHHHHHHHhcCCeEEEEc-CCHHHHHHHHHHHHH
Confidence 00011233444444444 23356888888888888999999999999999999999995 9988877777655
Q ss_pred -CCCC-------CHHHH--------HHHhCCCCCCeeEEEeccCCcc
Q 022028 258 -KVDH-------GTVTF--------LDKIEFLQNNLLSAHTVWVNHT 288 (304)
Q Consensus 258 -g~~~-------~~~~~--------l~~~g~l~~~~~~~H~~~l~~~ 288 (304)
|... +|.+. +.-.++++.+++++|++....-
T Consensus 198 ~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~~~~~H~s~~~~~ 244 (447)
T cd01314 198 QGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHVSSKEAA 244 (447)
T ss_pred cCCCChHHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHH
Confidence 6430 12211 2334567889889998876543
No 36
>PRK06846 putative deaminase; Validated
Probab=99.88 E-value=1.4e-21 Score=178.26 Aligned_cols=245 Identities=13% Similarity=0.079 Sum_probs=152.8
Q ss_pred cEEEEccEEEecCCC------CceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhh
Q 022028 20 TMILHNAVIVTMDKE------SRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQL 93 (304)
Q Consensus 20 ~~li~~~~ii~~~~~------~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~ 93 (304)
.+.|+|+++..+... ......++|.|++|+|++|++.... +..+.++||++|++|+|||||+|+|+.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~g~I~~i~~~~~~----~~~~~~~id~~g~~v~Pg~iD~H~H~~~~~ 80 (410)
T PRK06846 5 HYWLTNVRLETGFDYENGVIVQTETALCTLEIQDGKIVAIRPNKQV----PDATLPTYDANGLLMLPAFREMHIHLDKTY 80 (410)
T ss_pred ceEEEeeecCccccccCceecCCceeeEEEEEECCEEEEeecCCCC----CCCCCceEeCCCCEEecCEEeeeecccchh
Confidence 467888877543320 1123467999999999999975321 112357999999999999999999998876
Q ss_pred hhcccC----CCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCCC-------HHHHHHHHHHcCC
Q 022028 94 AKGIAD----DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-------VSEMAKAVELLGL 162 (304)
Q Consensus 94 ~~g~~~----~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~-------~~~~~~~~~~~gi 162 (304)
.++... ...+.+|+....+... .+.+.....+...+..++..|+|+++++.... .+.+.++..+...
T Consensus 81 ~~~~~~~~~~~~g~~~~l~~~~~~~~--~~~~~~~~~a~~~l~~~~~~Gtt~~r~~v~~~~~~~~~~~~a~~e~l~e~~~ 158 (410)
T PRK06846 81 YGGPWKACRPAKTIQDRIELEQKELP--ELLPTTQERAEKLIELLQSKGATHIRSHCNIDPVIGLKNLENLQAALERYKD 158 (410)
T ss_pred hccchhhcCCcccHHHHHhhhhhhHH--HhHHHHHHHHHHHHHHHHhCCccEEEEEEeeCcccccchHHHHHHHHHHhhC
Confidence 654321 1334566643222111 11123334445566677777999987654311 1333444555333
Q ss_pred eEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEE
Q 022028 163 RACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMH 242 (304)
Q Consensus 163 r~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H 242 (304)
+...+..... ..+. .... ..+++++....+.. +..++.|.....++++.+++++++|+++|+++++|
T Consensus 159 ~v~~~~~a~~-~~g~----~~~~-------~~~lL~~al~~Ga~-~i~gl~p~~~~~~~~~~l~~~~~lA~~~g~~v~~H 225 (410)
T PRK06846 159 GFTYEIVAFP-QHGL----LRSN-------SEPLMREAMKMGAH-LVGGVDPASVDGAIEKSLDTMFQIAVDFNKGVDIH 225 (410)
T ss_pred cceEEEEecc-Cccc----CCcc-------HHHHHHHHHHcCCC-EEeCCCCccCCcCHHHHHHHHHHHHHHhCCCcEEE
Confidence 3222111111 0010 0011 12334444333333 33356677777889999999999999999999999
Q ss_pred ecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccC---Ccchh
Q 022028 243 VAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV---NHTEV 290 (304)
Q Consensus 243 ~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l---~~~di 290 (304)
+.|...+.....+. +++++.+.|+++ +++++||+++ +++++
T Consensus 226 v~e~~~~~~~~~~~------~~~~~~~~gl~~-~v~~~H~~~l~~~~~~e~ 269 (410)
T PRK06846 226 LHDTGPLGVATIKY------LVETTEEAQWKG-KVTISHAFALGDLNEEEV 269 (410)
T ss_pred ECCCCChhHHHHHH------HHHHHHHhCCCC-CEEEEecchhhcCCHHHH
Confidence 99988766555442 789999999887 9999999986 66664
No 37
>PLN02942 dihydropyrimidinase
Probab=99.88 E-value=7.1e-21 Score=176.80 Aligned_cols=227 Identities=17% Similarity=0.244 Sum_probs=145.9
Q ss_pred cccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcc
Q 022028 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (304)
Q Consensus 18 ~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~ 97 (304)
+++++|+|++|++.+. ...++|+|+||+|++|++..+. ..+.++||++|++|+|||||+|+|+..+.+
T Consensus 4 ~~~lli~~~~v~~~~~----~~~~~i~I~~g~I~~i~~~~~~-----~~~~~~iD~~g~~v~PG~ID~H~H~~~~~~--- 71 (486)
T PLN02942 4 STKILIKGGTVVNAHH----QELADVYVEDGIIVAVAPNLKV-----PDDVRVIDATGKFVMPGGIDPHTHLAMPFM--- 71 (486)
T ss_pred CCcEEEECcEEEcCCC----CeEeEEEEECCEEEEEcCCCCC-----CCCCeEEECCCCEEecCEeeeeeccCcccC---
Confidence 4568999999998542 2467999999999999875421 124689999999999999999999976321
Q ss_pred cCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC---CHHHHHHHHHHcCCeEEeecccccCC
Q 022028 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ---HVSEMAKAVELLGLRACLVQSTMDCG 174 (304)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~---~~~~~~~~~~~~gir~~~~~~~~d~g 174 (304)
.....|+++.+++ .++.+||||++|+... .....++...+...+.. .+.+
T Consensus 72 ------------------~~~~~ed~~s~s~----aAl~gGvTTv~D~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~ 124 (486)
T PLN02942 72 ------------------GTETIDDFFSGQA----AALAGGTTMHIDFVIPVNGNLLAGYEAYEKKAEKSC-----MDYG 124 (486)
T ss_pred ------------------CCcccchHHHHHH----HHHcCCCeEEEeCCCCCCCCHHHHHHHHHHHHhhcC-----CCEE
Confidence 0122455555444 4699999999997521 11222222222211211 1111
Q ss_pred CCCC-CCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHH
Q 022028 175 EGLP-ASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVV 253 (304)
Q Consensus 175 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~ 253 (304)
.... ..+ ....+++..++++.+ +...+++++++++.+.++++.+.++++.+++++..+++| +|+....+.+
T Consensus 125 ~~~~~~~~----~~~~~~e~~~l~~~~---gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H-aE~~~~~~~~ 196 (486)
T PLN02942 125 FHMAITKW----DDTVSRDMETLVKEK---GINSFKFFMAYKGSLMVTDELLLEGFKRCKSLGALAMVH-AENGDAVFEG 196 (486)
T ss_pred EEEEecCC----cHhHHHHHHHHHHhC---CCceEEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEE-cCCHHHHHHH
Confidence 0000 001 112223344444433 123477777777777788999999999999999999999 8998776655
Q ss_pred HHh---cCCC-------CCH-------HHHHH-HhCCCCCCeeEEEeccCCc-chhc
Q 022028 254 MDT---RKVD-------HGT-------VTFLD-KIEFLQNNLLSAHTVWVNH-TEVN 291 (304)
Q Consensus 254 ~~~---~g~~-------~~~-------~~~l~-~~g~l~~~~~~~H~~~l~~-~di~ 291 (304)
.++ .|.. .+| ++++. -.++++.+++++|++++++ ++|.
T Consensus 197 ~~~~~~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~g~~~~i~H~s~~~~~e~i~ 253 (486)
T PLN02942 197 QKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVVHVMSIDAMEEIA 253 (486)
T ss_pred HHHHHHcCCCChhhhhccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHHH
Confidence 543 3431 023 44444 3377888999999999998 7775
No 38
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=99.88 E-value=2.4e-21 Score=174.90 Aligned_cols=210 Identities=15% Similarity=0.206 Sum_probs=136.1
Q ss_pred cccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcc
Q 022028 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (304)
Q Consensus 18 ~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~ 97 (304)
+.+++|+|++|++... ....+++|+|++|+|++|++... ..+.++||++|++|+|||||+|+|+.. ++.
T Consensus 2 ~~~~li~~~~i~~~~~--~~~~~~~i~i~~g~I~~i~~~~~------~~~~~viD~~g~~v~PGliD~H~H~~~---~g~ 70 (379)
T PRK12394 2 KNDILITNGHIIDPAR--NINEINNLRIINDIIVDADKYPV------ASETRIIHADGCIVTPGLIDYHAHVFY---DGT 70 (379)
T ss_pred CccEEEECcEEECCCC--CcccccEEEEECCEEEEEcCCCC------CCCCeEEECCCCEEECCEEEeeecCCC---CCc
Confidence 3468899999997542 23456799999999999987432 124589999999999999999999953 110
Q ss_pred cCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCCC------HHHHHHHHHHcCCeEEeecccc
Q 022028 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH------VSEMAKAVELLGLRACLVQSTM 171 (304)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~------~~~~~~~~~~~gir~~~~~~~~ 171 (304)
. ...+++. .++++|+||++|++... ......+..+.|+|.++.....
T Consensus 71 ~-----------------~~~~~~~----------~~l~~G~Ttv~d~g~~~~~~~~~~~~~~~a~~~~gira~l~~~~~ 123 (379)
T PRK12394 71 E-----------------GGVRPDM----------YMPPNGVTTVVDAGSAGTANFDAFYRTVICASKVRIKAFLTVSPP 123 (379)
T ss_pred c-----------------cccCHHH----------HHHhCCccEEEECCCCCcccHHHHHHHHhhhhcceeeeEEeeecc
Confidence 0 0112221 27899999999986321 2222335678889998876655
Q ss_pred cCCC-CCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEE--EeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChh
Q 022028 172 DCGE-GLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIW--FGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 248 (304)
Q Consensus 172 d~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~ 248 (304)
+... +.+.... ......++.+++++.+.....+ +++. .++++ ..+++.+++..++|+++|+++++|+.|+..
T Consensus 124 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g-~ki~~~~~~~~--~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~ 198 (379)
T PRK12394 124 GQTWSGYQENYD--PDNIDENKIHALFRQYRNVLQG-LKLRVQTEDIA--EYGLKPLTETLRIANDLRCPVAVHSTHPVL 198 (379)
T ss_pred cccccCcccccC--hhHCCHHHHHHHHHHCcCcEEE-EEEEEeccccc--ccchHHHHHHHHHHHHcCCCEEEEeCCCCc
Confidence 3211 1111100 0011135666777766543222 2333 33333 467889999999999999999999988754
Q ss_pred hHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCC
Q 022028 249 ENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN 286 (304)
Q Consensus 249 ~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~ 286 (304)
+. .+..+++.++.++.||++.+
T Consensus 199 ~~----------------~~~~~~l~~g~~~~H~~~~~ 220 (379)
T PRK12394 199 PM----------------KELVSLLRRGDIIAHAFHGK 220 (379)
T ss_pred cH----------------HHHHHhcCCCCEEEecCCCC
Confidence 21 22355577777899999955
No 39
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=99.87 E-value=2e-21 Score=179.95 Aligned_cols=225 Identities=15% Similarity=0.202 Sum_probs=138.4
Q ss_pred EEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCC
Q 022028 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (304)
Q Consensus 21 ~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~ 100 (304)
++|+|++|++++. ..+++|+|+||||++|++.... +.+.++||++|++|+|||||+|+|+....
T Consensus 1 ~li~n~~vv~~~~----~~~~~V~I~dg~I~~Ig~~~~~-----~~~~~vIDa~G~~vlPGlID~H~H~~~~~------- 64 (454)
T TIGR02033 1 KLIRGGTVVNADD----VFQADVLIEGGKIVAVGRNLSP-----PDAVEEIDATGKYVMPGGIDVHTHLEMPF------- 64 (454)
T ss_pred CEEECcEEEcCCC----ceEEEEEEECCEEEEecCCCCC-----CCCCcEEECCCCEEecCEecceeccCccc-------
Confidence 3689999998652 2568999999999999875321 12458999999999999999999996421
Q ss_pred CCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCCC----HHHHHHHHHHcCCeEEeecccccCCCC
Q 022028 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH----VSEMAKAVELLGLRACLVQSTMDCGEG 176 (304)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~----~~~~~~~~~~~gir~~~~~~~~d~g~~ 176 (304)
....++++++..++ .++.+||||++|+.... ....++...+... +....+.+..
T Consensus 65 --------------~~~~~~e~~~~~s~----~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 122 (454)
T TIGR02033 65 --------------GGTVTADDFFTGTK----AAAAGGTTTIIDFALPHKGESLTEALETWHEKAE----GKSVIDYGFH 122 (454)
T ss_pred --------------CCCCCcchHHHHHH----HHHhCCCCEEEeCcCCCCCCCHHHHHHHHHHHhc----cCceEEEEEE
Confidence 01234556655544 35689999999975321 1222333222211 1111111100
Q ss_pred CCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHh
Q 022028 177 LPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT 256 (304)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~ 256 (304)
.... ....+.+++..+.+.+ .+...++++++++..+.++++.++++++.|+++++++++|. |+..+.+.+.++
T Consensus 123 ~~~~---~~~~~~~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~-E~~~~~~~~~~~ 195 (454)
T TIGR02033 123 MMIT---HWNDEVLEEHIPELVE---EGITSFKVFMAYKNLLMVDDEELFEILKRAKELGALLQVHA-ENGDVIAELQAR 195 (454)
T ss_pred eccc---CCcHHHHHHHHHHHHh---cCCcEEEEEeecCCCCCCCHHHHHHHHHHHHhCCCeEEEEc-CCHHHHHHHHHH
Confidence 0000 0011223332333322 23456888888888888999999999999999999999995 988776655554
Q ss_pred c---CCCC-------CHH-------HH-HHHhCCCCCCeeEEEeccC-Ccchh
Q 022028 257 R---KVDH-------GTV-------TF-LDKIEFLQNNLLSAHTVWV-NHTEV 290 (304)
Q Consensus 257 ~---g~~~-------~~~-------~~-l~~~g~l~~~~~~~H~~~l-~~~di 290 (304)
+ |... +|. ++ +.-.++++.+++++|+.+- +.+++
T Consensus 196 ~~~~G~~~~~~~~~~~p~~~e~~~v~~~~~~~~~~~~~~~i~H~s~~~~~~~i 248 (454)
T TIGR02033 196 LLAQGKTGPEYHALSRPPESEAEAVARAIALAALANAPLYVVHVSTASAVDEI 248 (454)
T ss_pred HHHcCCCChhHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHH
Confidence 4 5420 121 12 2223567778888888873 23444
No 40
>TIGR01792 urease_alph urease, alpha subunit. This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.
Probab=99.86 E-value=8.8e-21 Score=174.55 Aligned_cols=189 Identities=17% Similarity=0.191 Sum_probs=132.8
Q ss_pred cccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhh--hhh---cCCCceEEeCCCCEeeccccccCccchhh
Q 022028 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADIL--QQF---SQMADQIIDLQSQILLPGFVNTHVHTSQQ 92 (304)
Q Consensus 18 ~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~--~~~---~~~~~~vID~~g~iv~PG~ID~H~Hl~~s 92 (304)
..+++|+|++|++.. . +..++|.|+||||++|++..++. ... .+.+.++||++|++|+|||||+|+|+..
T Consensus 65 ~MDlVIkNg~VID~~---g-i~kaDI~IkDGrIaaIG~~~~p~~~~~v~~~~~~~tEVIDa~GkIV~PGlIDtHvH~~~- 139 (567)
T TIGR01792 65 VLDLVITNALILDWT---G-IYKADIGIKNGRIVGIGKAGNPDTMDGVDMIVGASTEAISGEGKIVTAGGIDTHVHYIS- 139 (567)
T ss_pred cCcEEEECeEEECCC---C-eEEEEEEEECCEEEEEcCCCcccccccccccCCCCCeEEECCCCEEEECeEEeecCCCC-
Confidence 345899999999732 3 45789999999999999754321 000 0125689999999999999999999722
Q ss_pred hhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCC---------------CCHHHHHHHH
Q 022028 93 LAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---------------QHVSEMAKAV 157 (304)
Q Consensus 93 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~---------------~~~~~~~~~~ 157 (304)
++. ...++..|+||+.+.+. .+...+.+++
T Consensus 140 ---------------------------P~~--------~~aAl~gGVTTmI~~Gtgp~~~t~pTt~t~~~~~~~~~l~aa 184 (567)
T TIGR01792 140 ---------------------------PQQ--------VQAALDNGITTLIGGGTGPADGTNATTCTPGPWYLHRMLQAA 184 (567)
T ss_pred ---------------------------ccH--------HHHHHhCceEEEecCCCccccCCCCcccccchhhHHHHHHHh
Confidence 111 23468889999988431 1123445666
Q ss_pred HHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCC
Q 022028 158 ELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKT 237 (304)
Q Consensus 158 ~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~ 237 (304)
+..+++..+. ..+ . . ...+...+.++ . |. .++.++..+.++++.+++++++|+++++
T Consensus 185 ~~~~in~g~~----g~g--~--~-------~~~~~L~e~i~----a--Ga--~gfK~h~~y~~s~e~L~~al~~A~e~gv 241 (567)
T TIGR01792 185 DGLPINFGFT----GKG--S--G-------SGPAALIEQIE----A--GA--CGLKVHEDWGATPAAIDNALSVADEYDV 241 (567)
T ss_pred ccCCccEEEE----eCC--c--c-------chHHHHHHHHH----c--CC--cEEEeCCCCCCCHHHHHHHHHHHHHcCC
Confidence 6677764221 111 0 0 11122223322 1 22 4567888889999999999999999999
Q ss_pred eeeEEecCChhh---HHHHHHhcCCCCCHHHHHHHhCC
Q 022028 238 GIHMHVAEIPYE---NQVVMDTRKVDHGTVTFLDKIEF 272 (304)
Q Consensus 238 ~~~~H~~E~~~~---~~~~~~~~g~~~~~~~~l~~~g~ 272 (304)
++++|+ |+..| .+.+++.+|.. +++++...|+
T Consensus 242 ~V~iH~-ET~~E~g~ve~t~~a~g~r--pIh~~H~~G~ 276 (567)
T TIGR01792 242 QVAVHT-DTLNESGFVEDTIAAFKGR--TIHTYHTEGA 276 (567)
T ss_pred EEEEeC-CCcccchHHHHHHHHHCCC--cchhHhhcCC
Confidence 999999 99999 99999999874 9999998886
No 41
>PRK07583 cytosine deaminase-like protein; Validated
Probab=99.86 E-value=4.9e-20 Score=169.39 Aligned_cols=259 Identities=16% Similarity=0.078 Sum_probs=153.6
Q ss_pred CCcccEEEEccEEEecCCCC--------ceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCc
Q 022028 16 GSSSTMILHNAVIVTMDKES--------RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHV 87 (304)
Q Consensus 16 ~~~~~~li~~~~ii~~~~~~--------~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~ 87 (304)
+....++|+|+++-+..... .-....+|.|+||||.+|++..+. ..+.++||++|++|+|||||+|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~dg~i~~i~~~~~~-----~~~~~~id~~g~~v~Pg~id~H~ 82 (438)
T PRK07583 8 PESGRYWLKNARVPAALLEGGVPPGDTLEGLVLVDIEIADGKIAAILPAGGA-----PDELPAVDLKGRMVWPCFVDMHT 82 (438)
T ss_pred CCCCcEEEeccccccccccCccCCCcCCCCcEEEEEEEECCEEEEEecCCCC-----CCCCceecCCCCcccCCccccee
Confidence 44567899999864332211 123456999999999999986531 12568999999999999999999
Q ss_pred cchhhhhhccc--CCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCC---C----CHHHHHHHHH
Q 022028 88 HTSQQLAKGIA--DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---Q----HVSEMAKAVE 158 (304)
Q Consensus 88 Hl~~s~~~g~~--~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~---~----~~~~~~~~~~ 158 (304)
|+++...++.. ...++..++..........++.++++.++..++..++..|+|+++.+.. . ..+.+.+..+
T Consensus 83 Hld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~Gtt~vRt~vd~~~~~~~~~~~~i~~~~~ 162 (438)
T PRK07583 83 HLDKGHIWPRSPNPDGTFPGALDAVTADREAHWSAEDLYRRMEFGLRCAYAHGTSAIRTHLDSFAPQAAISWEVFAELRE 162 (438)
T ss_pred ccccceecCCCCCCCCCHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhChhhEEeeeccCCCCcccHHHHHHHHHH
Confidence 99987655422 1223333321111011123456777888888999999999996654321 1 1222334444
Q ss_pred HcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCe
Q 022028 159 LLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTG 238 (304)
Q Consensus 159 ~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~ 238 (304)
...-+.-..... + ++....... .. .+..+.+.+. .+.+. ++ +...+ ..++.+..++++|+++|++
T Consensus 163 ~~~~~~~~~~v~-~----~p~~~~~~~--~~-~eL~~~v~~~----~gv~g-~~-~~~~~-~~d~~l~~i~~lA~~~G~~ 227 (438)
T PRK07583 163 AWAGRIALQAVS-L----VPLDAYLTD--AG-ERLADLVAEA----GGLLG-GV-TYMNP-DLDAQLDRLFRLARERGLD 227 (438)
T ss_pred HhhccCeEEEEE-e----cChhhccCc--hH-HHHHHHHHHc----CCEEe-CC-CCCCC-CHHHHHHHHHHHHHHhCCC
Confidence 332222111000 0 011111111 11 2222233222 12222 11 11112 2567899999999999999
Q ss_pred eeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcc-------hhc-----------ccccccccc
Q 022028 239 IHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHT-------EVN-----------CTFGNFKYA 300 (304)
Q Consensus 239 ~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~-------di~-----------~p~sN~~l~ 300 (304)
+.+|++|+.+......+. ..+++.+.|+.+ +++++||++++.. +++ ||.+|++++
T Consensus 228 v~vH~~E~~~~~~~~l~~------~~~~~~~~G~~~-~v~i~H~~~l~~~~~~~~~~~i~~la~~gv~vv~~P~~~~~l~ 300 (438)
T PRK07583 228 LDLHVDETGDPASRTLKA------VAEAALRNGFEG-KVTCGHCCSLAVQPEEQAQATIALVAEAGIAIVSLPMCNLYLQ 300 (438)
T ss_pred cEEeECCCCCchHHHHHH------HHHHHHHhCCCC-CEEEEeccchhcCCHHHHHHHHHHHHHcCCeEEECcchhhhhc
Confidence 999999887654433332 456666778754 6999999999843 333 999998875
Q ss_pred c
Q 022028 301 V 301 (304)
Q Consensus 301 ~ 301 (304)
.
T Consensus 301 ~ 301 (438)
T PRK07583 301 D 301 (438)
T ss_pred C
Confidence 3
No 42
>PRK08323 phenylhydantoinase; Validated
Probab=99.84 E-value=3.5e-20 Score=171.83 Aligned_cols=216 Identities=18% Similarity=0.208 Sum_probs=135.6
Q ss_pred cEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccC
Q 022028 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (304)
Q Consensus 20 ~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~ 99 (304)
+++|+|++|++.+ . +.+++|+|+||||.+|++. + +.++||++|++|+|||||+|+|+.....
T Consensus 2 d~li~n~~v~~~~---~-~~~~~v~I~~g~I~~i~~~-~--------~~~viD~~g~~v~PGlID~H~H~~~~~~----- 63 (459)
T PRK08323 2 STLIKNGTVVTAD---D-TYKADVLIEDGKIAAIGAN-L--------GDEVIDATGKYVMPGGIDPHTHMEMPFG----- 63 (459)
T ss_pred cEEEECCEEEcCC---C-ceEEEEEEECCEEEEEecC-C--------CceEEECCCCEEeccEEeeeeccccccC-----
Confidence 4789999999854 2 3468999999999999864 1 3579999999999999999999954110
Q ss_pred CCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC----CHHHHHHHHHHcCCeEEeecccccCCC
Q 022028 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ----HVSEMAKAVELLGLRACLVQSTMDCGE 175 (304)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~----~~~~~~~~~~~~gir~~~~~~~~d~g~ 175 (304)
....+++++..++ .++.+||||++++... .....++........ ....+.+.
T Consensus 64 ----------------~~~~~e~~~~~~~----~a~~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~d~~~ 119 (459)
T PRK08323 64 ----------------GTVSSDDFETGTR----AAACGGTTTIIDFALQPKGQSLREALEAWHGKAAG----KAVIDYGF 119 (459)
T ss_pred ----------------CccccCcHHHHHH----HHHhCCCCEEEeCcCCCCCCChHHHHHHHHHHhcc----CceEEEEE
Confidence 0112344444333 4568999999997532 112222222221111 01111110
Q ss_pred CCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHH
Q 022028 176 GLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD 255 (304)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~ 255 (304)
..... ....+.+++..++++. +...+++++.+++.+.++++.++++++.|+++|.++++| .|+..+.+.+.+
T Consensus 120 ~~~~~---~~~~~~~~~~~~~~~~----g~~~ik~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v~~H-~e~~~~~~~~~~ 191 (459)
T PRK08323 120 HMIIT---DWNEVVLDEMPELVEE----GITSFKLFMAYKGALMLDDDELLRALQRAAELGALPMVH-AENGDAIAYLQA 191 (459)
T ss_pred EEEec---CCcHHHHHHHHHHHHc----CCCEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCEEEEE-cCChHHHHHHHH
Confidence 00000 0112333444444432 224578777777778899999999999999999999999 588877776665
Q ss_pred hc---CCC-------CCHHHH--------HHHhCCCCCCeeEEEeccC
Q 022028 256 TR---KVD-------HGTVTF--------LDKIEFLQNNLLSAHTVWV 285 (304)
Q Consensus 256 ~~---g~~-------~~~~~~--------l~~~g~l~~~~~~~H~~~l 285 (304)
++ |.. .+|.++ ++-.+.++.+++++|+...
T Consensus 192 ~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~~a~~~~~~~~i~H~s~~ 239 (459)
T PRK08323 192 KLLAEGKTGPEYHALSRPPEVEGEATNRAIMLAELAGAPLYIVHVSCK 239 (459)
T ss_pred HHHHcCCCChhhhhccCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCH
Confidence 54 431 124444 2444667778888887754
No 43
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=99.84 E-value=1.1e-19 Score=164.98 Aligned_cols=211 Identities=21% Similarity=0.266 Sum_probs=137.4
Q ss_pred EEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCC
Q 022028 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (304)
Q Consensus 21 ~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~ 100 (304)
++|+|++|++.+. ..+++|.|+||+|++|++..+.... ..+.++||++|++|+|||||+|+|+.... . +
T Consensus 3 ~~i~~~~v~~~~~----~~~~~i~i~~g~I~~v~~~~~~~~~--~~~~~~id~~g~~v~PG~id~H~H~~~~~----~-~ 71 (388)
T PRK10657 3 TLLKNAHVYAPED----LGKKDILIAGGKIIAIADNINIPDI--VPDIEVIDASGKILVPGFIDQHVHIIGGG----G-E 71 (388)
T ss_pred EEEEccEEECCCC----CcceEEEEECCEEEEecCCcccccc--CCCCeEEECCCCEEcccceeeeeCcccCC----C-C
Confidence 6899999998652 3568999999999999875432111 12468999999999999999999996311 0 1
Q ss_pred CCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCC-----CCH---HHHHHHHHHcCCeEEeeccccc
Q 022028 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-----QHV---SEMAKAVELLGLRACLVQSTMD 172 (304)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~-----~~~---~~~~~~~~~~gir~~~~~~~~d 172 (304)
.. | ...+++ .++.+++++|+||++|+.+ ... ....+++.+.|+|.+.....++
T Consensus 72 ~~---~---------~~~t~~-------~~~~~~~~~GvTTvvd~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~ 132 (388)
T PRK10657 72 GG---F---------STRTPE-------VQLSDLTEAGITTVVGLLGTDGITRSMESLLAKARALEEEGISAYMYTGSYH 132 (388)
T ss_pred cc---c---------ccCCHH-------HHHHHHHhCCceEEECCCCCCCCCCCHHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 00 1 112332 3566789999999999863 122 3345666789999985543332
Q ss_pred CCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCC------eeeEEecCC
Q 022028 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKT------GIHMHVAEI 246 (304)
Q Consensus 173 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~------~~~~H~~E~ 246 (304)
. +..+ ..+.+.+.....+++... + ++.+.++.....+++.++++.+.++..+. ++++|++|+
T Consensus 133 ~----~~~~----~~~~~~~~~~~~~~~~g~--g--~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~g~~~~i~vH~~~~ 200 (388)
T PRK10657 133 V----PVRT----ITGSIRKDIVLIDKVIGV--G--EIAISDHRSSQPTVEELARLAAEARVGGLLSGKAGIVHVHMGDG 200 (388)
T ss_pred C----Cchh----hhcchhhceehhhhhhCc--c--eeeeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 1 1100 011112222233333221 1 45667777778899999999988886554 799999986
Q ss_pred hhhHHHHHHhcCCCCCHH-HHHHHhCCCCCCeeEEEecc
Q 022028 247 PYENQVVMDTRKVDHGTV-TFLDKIEFLQNNLLSAHTVW 284 (304)
Q Consensus 247 ~~~~~~~~~~~g~~~~~~-~~l~~~g~l~~~~~~~H~~~ 284 (304)
....+ .+ +++++.|+...++...|+.+
T Consensus 201 ~~~l~-----------~v~~~l~~~Gv~~~~~~~~H~~~ 228 (388)
T PRK10657 201 KKGLQ-----------PLFELLENTDIPISQFLPTHVNR 228 (388)
T ss_pred hHHHH-----------HHHHHHHhcCCCcceeeCcccCC
Confidence 65433 34 67778899887877777775
No 44
>PLN02303 urease
Probab=99.82 E-value=9e-19 Score=165.23 Aligned_cols=211 Identities=17% Similarity=0.170 Sum_probs=131.6
Q ss_pred CCCCCCCCC-CCcccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhh-h------hcCCCceEEeCCCCEe
Q 022028 7 GGGSSSGSL-GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQ-Q------FSQMADQIIDLQSQIL 78 (304)
Q Consensus 7 ~~~~~~~~~-~~~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~-~------~~~~~~~vID~~g~iv 78 (304)
|+++++... ....+++|+|++|++.. . +..++|.|+||||++|++..++.. . ..+.+.++||++|++|
T Consensus 321 gm~~~~~~~~~~~~DlVItNa~IID~~---G-i~kaDI~IkDGrIvaIGkagnp~i~~gv~~~~~~g~~teVIDAeGlIV 396 (837)
T PLN02303 321 GMGQATGYGAADSLDTVITNAVIIDYT---G-IYKADIGIKDGLIVGIGKAGNPDVMDGVTSNMIVGVNTEVIAGEGMIV 396 (837)
T ss_pred CCCcCCCCCCcCcCCEEEeCeEEECCC---C-cEEeEEEEECCEEEEecCCCCcccccccccccccCCCCeEEECCCCEE
Confidence 445544432 22456899999999733 3 356799999999999997542210 0 0112468999999999
Q ss_pred eccccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecC-------CCCCHH
Q 022028 79 LPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEA-------GGQHVS 151 (304)
Q Consensus 79 ~PG~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~-------~~~~~~ 151 (304)
+|||||+|+|+.. +.........+...++..|++++.+. +.....
T Consensus 397 tPG~ID~HVHf~~----------------------------Pg~~~eaLasGVTTai~GGtgp~pnT~ptt~t~g~e~I~ 448 (837)
T PLN02303 397 TAGGIDCHVHFIC----------------------------PQLATEAIASGITTLVGGGTGPAHGTCATTCTPAPSHMK 448 (837)
T ss_pred EeCEEEeecCCCC----------------------------CcHHHHHHHHhHHHHHhcCCCCCCcccCcCCCCCHHHHH
Confidence 9999999999832 11111222233344444444432111 111123
Q ss_pred HHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHH
Q 022028 152 EMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDM 231 (304)
Q Consensus 152 ~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~ 231 (304)
.++++.+...+...+. +.+.. ..+++..++++. |. .++.++..+.++++.+++++++
T Consensus 449 ~~L~aa~~~pvn~Gf~------gkG~~---------s~l~eL~eliea------Ga--~GfK~h~d~gvTpelL~raLe~ 505 (837)
T PLN02303 449 LMLQSTDDLPLNFGFT------GKGNT---------AKPEGLHEIIKA------GA--MGLKLHEDWGTTPAAIDNCLDV 505 (837)
T ss_pred HHHHhcccCCCcEEEE------ccCcc---------cCHHHHHHHHHc------Cc--EEEEECCCCCCCHHHHHHHHHH
Confidence 3444444444443221 11100 111222333221 22 2455666678899999999999
Q ss_pred HHHhCCeeeEEecCChhh---HHHHHHhcCCCCCHHHHHHHhCCCCC
Q 022028 232 AREFKTGIHMHVAEIPYE---NQVVMDTRKVDHGTVTFLDKIEFLQN 275 (304)
Q Consensus 232 a~~~~~~~~~H~~E~~~~---~~~~~~~~g~~~~~~~~l~~~g~l~~ 275 (304)
|+++++++++| +|+.++ .+.+++.||.+ +++++++.|+++.
T Consensus 506 AkelGVpVaIH-AEdLnE~G~vE~t~~a~G~R--pIh~~h~~Ga~gg 549 (837)
T PLN02303 506 AEEYDIQVTIH-TDTLNESGCVEHSIAAFKGR--TIHTYHSEGAGGG 549 (837)
T ss_pred HHHcCCEEEEe-cCcccccchHHHHHHHHCCC--hHHHHHhcCCCCC
Confidence 99999999999 799888 89999999984 9999999999984
No 45
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=99.79 E-value=3.3e-18 Score=153.66 Aligned_cols=194 Identities=20% Similarity=0.245 Sum_probs=125.5
Q ss_pred EEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCC
Q 022028 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (304)
Q Consensus 21 ~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~ 100 (304)
++|+|++|++++. +.+.+|+|+||||++|++..++...++ ....++|++|++|+|||||+|+|+.... ..+
T Consensus 2 ~li~n~~v~~~~~----~~~~dvlI~~gkI~~Ig~~~~~~~~~~-~~~~i~d~~G~~v~PGlID~HvH~~~gg----~~~ 72 (389)
T TIGR01975 2 TLLKGAEVYAPEY----IGKKDILIANDKIIAIADEIPSTKDFV-PNCVVVGLEGMIAVPGFIDQHVHIIGGG----GEG 72 (389)
T ss_pred EEEECcEEEcCCc----CcceeEEEECCEEEEEcCCccccccCC-CCeEEECCCCCEEccCEeehhhcccccc----ccC
Confidence 5899999998642 357899999999999998765322121 1234556699999999999999997621 111
Q ss_pred CCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCC-----CC---HHHHHHHHHHcCCeEEeeccccc
Q 022028 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-----QH---VSEMAKAVELLGLRACLVQSTMD 172 (304)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~-----~~---~~~~~~~~~~~gir~~~~~~~~d 172 (304)
.. ...+++ .++.+++++||||++++.+ .+ .....++..+.|+|.+......+
T Consensus 73 ~~-------------~~~~~e-------~~~~e~l~~GvTTv~d~~g~~~~~~~~~~~~a~~~al~~~Gir~~~~~g~~~ 132 (389)
T TIGR01975 73 GP-------------TTRTPE-------LTLSDITKGGVTTVVGLLGTDGITRHMESLLAKARALEEEGISCYMLTGAYH 132 (389)
T ss_pred CC-------------ccCCHH-------HHHHHHHhCCcEEEecCcccCccccChhhHHHHHHHHHHhCCEEEEEccccc
Confidence 11 012333 2478899999999999764 22 33678889999999987765544
Q ss_pred CCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhC----Ce--eeEEecCC
Q 022028 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK----TG--IHMHVAEI 246 (304)
Q Consensus 173 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~----~~--~~~H~~E~ 246 (304)
.. .... ...+.....+++... |.-++.++-+-....+-+.++.+.+.++.-| ++ +++|+...
T Consensus 133 ~p----~~t~----t~~~~~d~~~~d~ii----G~~~ia~sd~r~~~~~~~~l~~~~~~~~~~g~~~~~~g~~~vH~g~~ 200 (389)
T TIGR01975 133 VP----SRTI----TGSVESDLLLIDKVI----GVGEIAISDHRSAQPTVEHLTNMAAEARVGGLLGGKPGIVNFHVGDS 200 (389)
T ss_pred CC----Cccc----ccchhhheeeehhhc----ccceEEEccCcCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCc
Confidence 21 1110 011111111222211 1112445555445667788888999999988 88 99999988
Q ss_pred hhhHHHHHH
Q 022028 247 PYENQVVMD 255 (304)
Q Consensus 247 ~~~~~~~~~ 255 (304)
+...+...+
T Consensus 201 ~~~l~~l~~ 209 (389)
T TIGR01975 201 KRALQPIYE 209 (389)
T ss_pred hhhHHHHHH
Confidence 776665544
No 46
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=99.78 E-value=3.1e-18 Score=142.06 Aligned_cols=214 Identities=18% Similarity=0.199 Sum_probs=129.8
Q ss_pred CCcccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhh
Q 022028 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95 (304)
Q Consensus 16 ~~~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~ 95 (304)
+|+.++++++++++++.. ..-...+|.|.||||.+++ ..+. +.+.++||+.|++|.|||||.|+|.++..
T Consensus 1 ~mqfdiLLt~~rlidpa~--g~d~~tniai~ngkIaa~~-d~~a-----pa~tq~Ida~Gc~VspG~iDlHvHvy~gg-- 70 (386)
T COG3964 1 MMQFDILLTGGRLIDPAR--GIDEITNIAIINGKIAAAD-DYPA-----PAETQIIDADGCIVSPGLIDLHVHVYYGG-- 70 (386)
T ss_pred CCccceeeeCCeeccccc--ccCccceeeeecCeEEecc-CcCC-----ChhheEEccCccEeccCeeeeeeEEecCC--
Confidence 467889999999998653 3446678999999999999 3332 23579999999999999999999997632
Q ss_pred cccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCCC---HHHHHHHH---HHcCCeEEeecc
Q 022028 96 GIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH---VSEMAKAV---ELLGLRACLVQS 169 (304)
Q Consensus 96 g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~---~~~~~~~~---~~~gir~~~~~~ 169 (304)
+.. ...|+. .+..+||||+.|.++.. .+.+.+.. ....+.+++...
T Consensus 71 ------t~~------------~v~pd~----------~ga~~GvTTvVDAGSaGaanf~gF~r~vie~Sr~RI~Aflnvs 122 (386)
T COG3964 71 ------TEG------------GVRPDM----------YGAPNGVTTVVDAGSAGAANFDGFYRTVIEASRVRIKAFLNVS 122 (386)
T ss_pred ------Ccc------------CcCHHH----------ccccCCceEEEecCCcCccchhhHHHHhhcchhheeeeeeecc
Confidence 110 111221 25689999999988643 23333322 222334433322
Q ss_pred cccCCCCCCCCcccCChHHHH--HHHHHHHHHHcCCCCCC-eEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCC
Q 022028 170 TMDCGEGLPASWAVRTTDDCI--QSQKELYAKHHHAADGR-IRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEI 246 (304)
Q Consensus 170 ~~d~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~ 246 (304)
. .|-.-+.+.. ..+.+ ++..+.++++.+.-.|+ ++..-...+.+..+| ++...+.|+..++++++|+.|.
T Consensus 123 ~--~Gl~a~nE~~---d~~nid~d~i~aa~reh~d~ivGlKvR~s~~~~g~~GitP--l~la~~ia~~~klPlmvHigeP 195 (386)
T COG3964 123 P--PGLTASNELY---DPDNIDEDKIHAAFREHRDVIVGLKVRVSTEDIGEYGITP--LTLALRIANDLKLPLMVHIGEP 195 (386)
T ss_pred C--cceeeehhhC---ChhhCCHHHHHHHHHhCcCcEEEEEEEeeeccccccCCch--HHHHHHHHhhcCCceEEecCCC
Confidence 1 1211111111 11111 23445555544321111 112222334567777 6667889999999999999997
Q ss_pred hhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchh
Q 022028 247 PYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEV 290 (304)
Q Consensus 247 ~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di 290 (304)
....+.+.++ |++.-++.||.+-.+.-+
T Consensus 196 p~~~dEvler----------------L~~GDIitHcfngkpn~~ 223 (386)
T COG3964 196 PVLMDEVLER----------------LRRGDIITHCFNGKPNTI 223 (386)
T ss_pred CccHHHHHHh----------------ccCCceeeeeccCCCCCc
Confidence 7654433322 455668999998765444
No 47
>PRK09357 pyrC dihydroorotase; Validated
Probab=99.77 E-value=2.4e-17 Score=151.24 Aligned_cols=174 Identities=18% Similarity=0.265 Sum_probs=116.3
Q ss_pred EEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCC
Q 022028 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (304)
Q Consensus 21 ~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~ 100 (304)
++|+|++|++.+ ..+.+++|.|+||+|.+|++... ..+.++||++|++|+|||||+|+|+...
T Consensus 3 ~~i~~~~v~~~~---~~~~~~~I~I~dg~I~~i~~~~~------~~~~~~iD~~g~~v~PG~ID~H~H~~~~-------- 65 (423)
T PRK09357 3 ILIKNGRVIDPK---GLDEVADVLIDDGKIAAIGENIE------AEGAEVIDATGLVVAPGLVDLHVHLREP-------- 65 (423)
T ss_pred EEEEeEEEECCC---CCcceeeEEEECCEEEEeeCCCC------CCCCeEEECCCCEEeCCEEecccccCCC--------
Confidence 789999999743 34578999999999999986421 1246899999999999999999997431
Q ss_pred CCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC--------CHHHHHHHHHHcCCeEEeeccccc
Q 022028 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------HVSEMAKAVELLGLRACLVQSTMD 172 (304)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~--------~~~~~~~~~~~~gir~~~~~~~~d 172 (304)
. ..+.++++..++. ++++||||++++... ..+...+++++.+++.+.....++
T Consensus 66 ~---------------~~~~e~~~~~~~~----a~~~GvTt~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (423)
T PRK09357 66 G---------------QEDKETIETGSRA----AAAGGFTTVVAMPNTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGAIT 126 (423)
T ss_pred C---------------ccccccHHHHHHH----HHhCCCeEEEecCCCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEE
Confidence 0 1123444444443 469999999987631 234455666666766555443333
Q ss_pred CCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChh
Q 022028 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 248 (304)
Q Consensus 173 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~ 248 (304)
.+ ... ..+++..++.+ .+ + ..+.+++.+.++++.++.+++.|+++|.++++|+.|+.-
T Consensus 127 ~~--~~~--------~~~~~~~~l~~------~g-v-~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~ee~~~ 184 (423)
T PRK09357 127 KG--LAG--------EELTEFGALKE------AG-V-VAFSDDGIPVQDARLMRRALEYAKALDLLIAQHCEDPSL 184 (423)
T ss_pred eC--CCC--------ccHHHHHHHHh------CC-c-EEEECCCcccCCHHHHHHHHHHHHhcCCEEEEeCCCHHH
Confidence 22 111 11122222222 12 2 245566777788999999999999999999999987654
No 48
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=99.75 E-value=9.1e-17 Score=146.84 Aligned_cols=214 Identities=17% Similarity=0.137 Sum_probs=124.9
Q ss_pred EEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCC
Q 022028 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (304)
Q Consensus 21 ~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~ 100 (304)
++|+|++|+++.+ .....++|.|+||||++|++..+ +.+.++||++|++|+|||||+|+|+......
T Consensus 2 ~~i~n~~v~~~~~--~~~~~~~i~I~~g~I~~i~~~~~------~~~~~~iD~~G~~v~PG~iD~H~H~~~~~~~----- 68 (415)
T cd01297 2 LVIRNGTVVDGTG--APPFTADVGIRDGRIAAIGPILS------TSAREVIDAAGLVVAPGFIDVHTHYDGQVFW----- 68 (415)
T ss_pred EEEECCEEECCCC--CccccceEEEECCEEEEEecCCC------CCCCeEEECCCCEEccCEeeeeecCCccccc-----
Confidence 6899999998543 23456899999999999986532 1246899999999999999999999652110
Q ss_pred CCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCC---------------------------------
Q 022028 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG--------------------------------- 147 (304)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~--------------------------------- 147 (304)
. . ....++..||||+++...
T Consensus 69 -------------------~-~-------~~~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (415)
T cd01297 69 -------------------D-P-------DLRPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEGLVALGEGLPWGW 121 (415)
T ss_pred -------------------C-c-------chhhHHhCcEEEEEeccccCccCCCChhhhhhhhhhhhcccccccccCCCC
Confidence 0 0 012356789999876421
Q ss_pred CCHHHHHHHHHHc--CCeEEe--e-cccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCH
Q 022028 148 QHVSEMAKAVELL--GLRACL--V-QSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATD 222 (304)
Q Consensus 148 ~~~~~~~~~~~~~--gir~~~--~-~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 222 (304)
.......+.++.. .+.... . ..+....-+.. . ....++.+++..++++++.+.+.-.++.+..+......++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~h~~l~~~~~g~~--~-~~~~~~~~~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~ 198 (415)
T cd01297 122 ATFAEYLDALEARPPAVNVAALVGHAALRRAVMGLD--A-REATEEELAKMRELLREALEAGALGISTGLAYAPRLYAGT 198 (415)
T ss_pred CCHHHHHHHHHhcCCCcCeeeccCcHHHHHHHhCcC--C-CCCCHHHHHHHHHHHHHHHHCCCeEEEcccccCCcccCCH
Confidence 0112223333222 222210 0 00000000000 0 0112344566677776655543323333322211125688
Q ss_pred HHHHHHHHHHHHhCCeeeEEecCCh-hhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCc
Q 022028 223 RLLLETRDMAREFKTGIHMHVAEIP-YENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH 287 (304)
Q Consensus 223 e~l~~~~~~a~~~~~~~~~H~~E~~-~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~ 287 (304)
+++.+++++++++|..+.+|+.+.. .+.+...+ .++..... +.++.+.|++....
T Consensus 199 ~~l~~~~~~a~~~g~~v~~H~e~~~~~e~~av~~-------~~~~a~~~---g~r~~i~H~ss~~~ 254 (415)
T cd01297 199 AELVALARVAARYGGVYQTHVRYEGDSILEALDE-------LLRLGRET---GRPVHISHLKSAGA 254 (415)
T ss_pred HHHHHHHHHHHHcCCEEEEEECcccccHHHHHHH-------HHHHHHHh---CCCEEEEEEecCCC
Confidence 8999999999999999999985432 23333222 33333333 45899999998876
No 49
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=99.74 E-value=9.5e-17 Score=148.22 Aligned_cols=193 Identities=19% Similarity=0.196 Sum_probs=125.6
Q ss_pred cccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhh-------hhcCCCceEEeCCCCEeeccccccCccch
Q 022028 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQ-------QFSQMADQIIDLQSQILLPGFVNTHVHTS 90 (304)
Q Consensus 18 ~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~-------~~~~~~~~vID~~g~iv~PG~ID~H~Hl~ 90 (304)
..+++|+|++|++.. ..+ ..++|.|+||||++|++...+.. ...+.+.++||++|++|+|||||+|+|+.
T Consensus 67 ~~DlVI~Ng~ViD~~--~gi-~kaDI~IkdGrI~aIG~~~~p~~~~~v~~~~~~g~~tevIDa~G~iVtPG~ID~HvH~~ 143 (572)
T PRK13309 67 VLDLVITNVTIVDAR--LGV-IKADVGIRDGKIVGIGKSGNPSTMDGVTQGMVVGVSTDAISGEHLILTAAGIDTHIHLI 143 (572)
T ss_pred cCCEEEECeEEEcCC--CCE-EEEEEEEECCEEEEecCCCccccccccccccccCCCceEEECCCCEEEeCEEEeecccC
Confidence 346899999999743 233 47899999999999987543210 00012468999999999999999999973
Q ss_pred hhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCC---------------CCHHHHHH
Q 022028 91 QQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---------------QHVSEMAK 155 (304)
Q Consensus 91 ~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~---------------~~~~~~~~ 155 (304)
. |... ..++.+||||+.+.+. +....+.+
T Consensus 144 ~----------------------------P~~~--------~aAl~gGVTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~ 187 (572)
T PRK13309 144 S----------------------------PQQA--------YHALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLR 187 (572)
T ss_pred C----------------------------cchH--------HHHHcCceEEEEecCCCCccCCCCCCCCCCHHHHHHHHH
Confidence 3 1100 2478999999995320 01334455
Q ss_pred HHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHh
Q 022028 156 AVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF 235 (304)
Q Consensus 156 ~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~ 235 (304)
+++...+...+. +.+.. . .+.+..++++. |.+ ++..+..+..+++.+.+++++|+++
T Consensus 188 ~a~~~pvn~g~~------gkg~~------~---~~~~l~el~~a------Ga~--gfk~~~d~g~t~~~L~~aLe~A~~~ 244 (572)
T PRK13309 188 SIEGLPVNVGIL------GKGNS------Y---GRGPLLEQAIA------GVA--GYKVHEDWGATAAALRHALRVADEV 244 (572)
T ss_pred HhccCCcCEEEE------cCCCC------C---CHHHHHHHHhc------CcE--EEEecCcCCcCHHHHHHHHHHHHhc
Confidence 555444443211 11100 0 01222222221 322 2333334556899999999999999
Q ss_pred CCeeeEE---ecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCC
Q 022028 236 KTGIHMH---VAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQN 275 (304)
Q Consensus 236 ~~~~~~H---~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~ 275 (304)
+.++.+| ++|. ..++.+.++++. ++++++...|+++.
T Consensus 245 gv~VaiH~d~lnE~-g~vE~~~aa~~g--rpih~~H~~Gaggg 284 (572)
T PRK13309 245 DIQVAVHTDSLNEC-GYVEDTIDAFEG--RTIHTFHTEGAGGG 284 (572)
T ss_pred CCEEEEeCCccccc-hhHHHHHHHhCC--CceeeeeccCcccC
Confidence 9999999 7777 667777888887 48999998888763
No 50
>PLN02795 allantoinase
Probab=99.74 E-value=1.8e-16 Score=147.69 Aligned_cols=186 Identities=15% Similarity=0.152 Sum_probs=109.8
Q ss_pred cccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcc
Q 022028 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (304)
Q Consensus 18 ~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~ 97 (304)
+.+++|+|++|++.+ .+ ..++|.|+||+|++|++..+....+ .+.++||++|++|+|||||+|+|+...
T Consensus 43 ~~~~vi~~~~vv~~~---~~-~~~~v~i~dG~I~~I~~~~~~~~~~--~~~~~ida~G~~v~PG~ID~H~H~~~~----- 111 (505)
T PLN02795 43 WPHFVLYSKRVVTPA---GV-IPGAVEVEGGRIVSVTKEEEAPKSQ--KKPHVLDYGNAVVMPGLIDVHVHLNEP----- 111 (505)
T ss_pred ccceEEECCEEEECC---Ce-EEEEEEEECCEEEEecCcccccccc--CCCEEEECCCCEEecCEEecccCcCCC-----
Confidence 367999999999854 33 3589999999999998754311101 145899999999999999999998431
Q ss_pred cCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCC-CC----HHHHHHHHHHcCCeEEeeccccc
Q 022028 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-QH----VSEMAKAVELLGLRACLVQSTMD 172 (304)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~-~~----~~~~~~~~~~~gir~~~~~~~~d 172 (304)
.+.. .+++.. ....++.+||||++|+.. .. .....+... +......+.+
T Consensus 112 ----~~~~--------------~e~~~~----~~~aa~~gGvTtv~dmp~~~~P~~~~~~~~~~~~----~~~~~~~~vd 165 (505)
T PLN02795 112 ----GRTE--------------WEGFPT----GTKAAAAGGITTLVDMPLNSFPSTTSVETLELKI----EAAKGKLYVD 165 (505)
T ss_pred ----Cccc--------------hhHHHH----HHHHHHcCCcEEEECCCCCCCCCCChHHHHHHHH----HHhccCceee
Confidence 0111 133333 334466799999999862 11 112222211 1111111222
Q ss_pred CCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCccc---CCCHHHHHHHHHHHHHhCCeeeEEecCChh
Q 022028 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIM---NATDRLLLETRDMAREFKTGIHMHVAEIPY 248 (304)
Q Consensus 173 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~ 248 (304)
.+. .... ...... ..+.++.+...+.-.+++++.+++.+ .++++.+.++++.++++|+++++|+ |...
T Consensus 166 ~~~--~~~~-~~~~~~----~~~~l~~~~~~G~~g~k~f~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~-E~~~ 236 (505)
T PLN02795 166 VGF--WGGL-VPENAH----NASVLEELLDAGALGLKSFMCPSGINDFPMTTATHIKAALPVLAKYGRPLLVHA-EVVS 236 (505)
T ss_pred eec--eecc-cCcchh----HHHHHHHHHHCCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHHhCCEEEEec-CChh
Confidence 111 0000 000111 12223333222222367777666543 5688899999999999999999996 4443
No 51
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.73 E-value=5.4e-17 Score=144.89 Aligned_cols=188 Identities=16% Similarity=0.160 Sum_probs=115.5
Q ss_pred eEEeCCCCEeeccccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC
Q 022028 69 QIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ 148 (304)
Q Consensus 69 ~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~ 148 (304)
++||++|++|+|||||+|+|+.... .....|. ..+++.....+...+..+|.+||||++|+++.
T Consensus 2 ~vID~~g~~v~PGliD~H~Hl~~~~-------~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g~~ 65 (342)
T cd01299 2 QVIDLGGKTLMPGLIDAHTHLGSDP-------GDLPLDL---------ALPVEYRTIRATRQARAALRAGFTTVRDAGGA 65 (342)
T ss_pred cEEeCCCCEECCCeeeeeeeccccC-------CCccccc---------cCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCc
Confidence 6899999999999999999986521 1111111 12455555566778889999999999999854
Q ss_pred CHHH---HHHHHHHcCCeEEeecccccCCCCCCCCc---------ccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCc
Q 022028 149 HVSE---MAKAVELLGLRACLVQSTMDCGEGLPASW---------AVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQ 216 (304)
Q Consensus 149 ~~~~---~~~~~~~~gir~~~~~~~~d~g~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 216 (304)
.... ..+.....|.|.+.+........+..... .........++.++.+++....+.+.+|+++....
T Consensus 66 ~~~~~~~~~~~g~~~gPr~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~ 145 (342)
T cd01299 66 DYGLLRDAIDAGLIPGPRVFASGRALSQTGGHGDPRGLSGLFPAGGLAAVVDGVEEVRAAVREQLRRGADQIKIMATGGV 145 (342)
T ss_pred chHHHHHHHHcCCccCCceeecchhhcccCCCCccccccccccccCCcceecCHHHHHHHHHHHHHhCCCEEEEeccCCc
Confidence 3222 12222234556655444332111111000 00001111233444555555556678888775321
Q ss_pred --------ccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcc
Q 022028 217 --------IMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHT 288 (304)
Q Consensus 217 --------~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~ 288 (304)
...++++.++++++.|+++|+++.+|+.+.. .++.+.+.|. ..+.||.+++++
T Consensus 146 ~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~---------------~i~~~l~~G~----~~i~H~~~~~~~ 206 (342)
T cd01299 146 LSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGAE---------------AIRRAIRAGV----DTIEHGFLIDDE 206 (342)
T ss_pred CCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCHH---------------HHHHHHHcCC----CEEeecCCCCHH
Confidence 1257899999999999999999999986532 2344444554 258999999998
Q ss_pred hhc
Q 022028 289 EVN 291 (304)
Q Consensus 289 di~ 291 (304)
+++
T Consensus 207 ~~~ 209 (342)
T cd01299 207 TIE 209 (342)
T ss_pred HHH
Confidence 887
No 52
>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]
Probab=99.73 E-value=1.5e-16 Score=137.95 Aligned_cols=193 Identities=17% Similarity=0.244 Sum_probs=129.9
Q ss_pred CcccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhc
Q 022028 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (304)
Q Consensus 17 ~~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g 96 (304)
+...++|+|++|+..|. . ...||+++||.|.+|+++..+ +.+.++||+.|++|+||.||.|+|+.+.
T Consensus 12 ~s~rllikgg~vvN~d~--~--~~aDV~vedGiI~~vg~~l~i-----pgg~~~ida~g~~ViPGgID~Hthlq~p---- 78 (522)
T KOG2584|consen 12 ASNRLLIKGGRVVNDDQ--S--FKADVYVEDGIIKEVGENLII-----PGGVKVIDATGKMVIPGGIDPHTHLQMP---- 78 (522)
T ss_pred cccceeeeCCEEEccCC--c--eeeeEEeccCEEEEecccEEc-----CCCceEEecCCcEEecCccCccceeccc----
Confidence 45568999999998652 2 356999999999999998764 3478999999999999999999999552
Q ss_pred ccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC-CHHHHHHHHHHcCCeEEeecccccCCC
Q 022028 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-HVSEMAKAVELLGLRACLVQSTMDCGE 175 (304)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~-~~~~~~~~~~~~gir~~~~~~~~d~g~ 175 (304)
| ....+.++++.++.. +|..|+|++.|+.-. ....++++.+...-. .-...++|.|.
T Consensus 79 ------~-----------~G~ts~DdF~~GTkA----AlaGGtTmiID~vlp~~~~slv~afe~wr~~-Ad~k~cCDygl 136 (522)
T KOG2584|consen 79 ------F-----------MGMTSVDDFFQGTKA----ALAGGTTMIIDFVLPDKGTSLVEAFEKWREW-ADPKVCCDYGL 136 (522)
T ss_pred ------c-----------CCccchhhhhcccHH----HhcCCceEEEEEecCCCCchHHHHHHHHHhh-cCCceeeeeee
Confidence 1 122345667766554 678999999997521 112233333322111 01122334332
Q ss_pred CCC-CCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHH
Q 022028 176 GLP-ASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQV 252 (304)
Q Consensus 176 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~ 252 (304)
... ..|. ..+++..+.+.. +.+.+.++.+++....+.+++++|.+.++.+++.+...++|+ |+.+-++.
T Consensus 137 hv~It~W~-----~~v~eem~~l~~--ekGvnsF~~fmayk~~~~v~d~~lye~l~~~~~lgala~vHA-Engd~iae 206 (522)
T KOG2584|consen 137 HVGITWWS-----PSVKEEMEILVK--EKGVNSFKFFMAYKDLYMVRDSELYEALKVCAELGALAMVHA-ENGDAIAE 206 (522)
T ss_pred eEeeeecC-----cchHHHHHHHhh--hcCcceEEeeeeeccccccCHHHHHHHHHHHhhcchhheehh-hcchhhhh
Confidence 111 1222 223333444442 334567888999999999999999999999999999999995 77765544
No 53
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=99.72 E-value=1.7e-16 Score=146.31 Aligned_cols=177 Identities=18% Similarity=0.152 Sum_probs=107.1
Q ss_pred cEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccC
Q 022028 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (304)
Q Consensus 20 ~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~ 99 (304)
+++|+|++|+++++ . ..++|.|+||+|++|++... +.+.++||++|++|+|||||+|+|+....
T Consensus 1 dl~i~~~~v~~~~~---~-~~~~v~i~dg~I~~i~~~~~------~~~~~~id~~g~~v~PG~ID~H~H~~~~~------ 64 (443)
T TIGR03178 1 DLIIRGGRVILPNG---E-READVGVKGGKIAAIGPDIL------GPAAKIIDAGGLVVFPGVVDTHVHINEPG------ 64 (443)
T ss_pred CEEEECcEEECCCC---c-eEEEEEEECCEEEEeeCCCC------CCCCeEEECCCCEEeccEeccccccCCCC------
Confidence 36899999998652 2 46899999999999987532 12568999999999999999999985410
Q ss_pred CCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCC-CC-C---HHHHHHHHHHcCC-eEEeecccccC
Q 022028 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-GQ-H---VSEMAKAVELLGL-RACLVQSTMDC 173 (304)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~-~~-~---~~~~~~~~~~~gi-r~~~~~~~~d~ 173 (304)
... .+++. .+...++.+||||++++. .. . .....+...+... +..+...+. .
T Consensus 65 ---~~~--------------~~~~~----~~~~~~~~gGvTtv~dmp~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~-~ 122 (443)
T TIGR03178 65 ---RTE--------------WEGFE----TGTRAAAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLAVDVGFW-G 122 (443)
T ss_pred ---ccc--------------cchHH----HHHHHHHcCCeEEEEECCCCCCCCCCcHHHHHHHHHHhccCCceeEEEE-e
Confidence 000 12222 233457899999999985 21 1 1111222111111 111100000 0
Q ss_pred CCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcc---cCCCHHHHHHHHHHHHHhCCeeeEEecCChhh
Q 022028 174 GEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQI---MNATDRLLLETRDMAREFKTGIHMHVAEIPYE 249 (304)
Q Consensus 174 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~ 249 (304)
+ ..+ +..++ ++.+...+...+++++++.+. ...+++.+.++++.++++|+.+.+| +|+...
T Consensus 123 ~--~~~--------~~~~~----i~~~~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H-~E~~~~ 186 (443)
T TIGR03178 123 G--LVP--------YNLDD----LRELDEAGVVGFKAFLSPSGDDEFPHVDDWQLYKGMRELARLGQLLLVH-AENPAI 186 (443)
T ss_pred c--cCC--------CCHHH----HHHHHHCCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHhcCCeEEEe-ccChHH
Confidence 0 000 11122 233333333456777665443 3567888999999999999999999 677654
No 54
>PRK09237 dihydroorotase; Provisional
Probab=99.72 E-value=4.5e-16 Score=140.85 Aligned_cols=210 Identities=16% Similarity=0.156 Sum_probs=118.4
Q ss_pred EEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCC
Q 022028 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (304)
Q Consensus 21 ~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~ 100 (304)
++|+|++|++... ......+|+|+||||++|++..+. +.+.++||++|++|+|||||+|+|+..+..
T Consensus 1 ~~i~~~~v~d~~~--~~~~~~~v~i~~g~I~~v~~~~~~-----~~~~~~iD~~g~~v~PG~iD~H~H~~~~~~------ 67 (380)
T PRK09237 1 LLLRGGRVIDPAN--GIDGVIDIAIEDGKIAAVAGDIDG-----SQAKKVIDLSGLYVSPGWIDLHVHVYPGST------ 67 (380)
T ss_pred CEEEeEEEECCCC--CcccceEEEEECCEEEEecCCCCC-----CCCCeEEECCCCEEecCEEEeeecCCCCCC------
Confidence 4789999998553 234668999999999999875431 124689999999999999999999864210
Q ss_pred CCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCC---CCHHHHHHHHHHc-CCeEEeecccccCCCC
Q 022028 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---QHVSEMAKAVELL-GLRACLVQSTMDCGEG 176 (304)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~---~~~~~~~~~~~~~-gir~~~~~~~~d~g~~ 176 (304)
.+ . .+. ...++..|+||++++.. ...+.+.+...+. +.+......+...++.
T Consensus 68 ----~~--------~--~~~----------~~~~~~~G~Ttv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~ 123 (380)
T PRK09237 68 ----PY--------G--DEP----------DEVGVRSGVTTVVDAGSAGADNFDDFRKLTIEASKTRVLAFLNISRIGLL 123 (380)
T ss_pred ----cc--------C--CCH----------HHHHHhCCcCEEEECCCCCCCCHHHHHHHHHhhhCcEEEEEEeeeccccc
Confidence 00 0 001 12368999999998653 2344555555544 6654332222212221
Q ss_pred CCCCcccCChHHHHHHHHHHHHHHcCCCCCC--eEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHH
Q 022028 177 LPASWAVRTTDDCIQSQKELYAKHHHAADGR--IRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVM 254 (304)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~ 254 (304)
.+. ..........++..++++++.. +. ++..+..........+.++...+++++.++++.+|+.+...+.+..
T Consensus 124 ~~~-~~~~~~~~~~~~~~~~~~~~~~---~v~glk~~~~~~v~~~~~~~~~~~~~~~a~~~g~~v~~H~~~~~~~~~~l- 198 (380)
T PRK09237 124 AQD-ELADLEDIDADAVAEAVKRNPD---FIVGIKARMSSSVVGDNGIEPLELAKAIAAEANLPLMVHIGNPPPSLEEI- 198 (380)
T ss_pred ccc-hhcCHhHCCHHHHHHHHHhCcC---cEEEEEEEEecccccccCCchHHHHHHHHHhcCCCEEEEcCCCCCCHHHH-
Confidence 111 1100111122344555554432 22 2333321111111113445556667789999999986654332221
Q ss_pred HhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCc
Q 022028 255 DTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH 287 (304)
Q Consensus 255 ~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~ 287 (304)
.+++.+..++.||++.++
T Consensus 199 ---------------~~~l~~g~~~~H~~~~~~ 216 (380)
T PRK09237 199 ---------------LELLRPGDILTHCFNGKP 216 (380)
T ss_pred ---------------HhhccCCCEEEecCCCCC
Confidence 112333447899999986
No 55
>PRK09061 D-glutamate deacylase; Validated
Probab=99.71 E-value=2.1e-15 Score=140.69 Aligned_cols=213 Identities=17% Similarity=0.149 Sum_probs=127.3
Q ss_pred CcccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhc
Q 022028 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (304)
Q Consensus 17 ~~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g 96 (304)
++.+++|+|++|++++. .....++|.|+||+|++|++... .+.++||++|++|+|||||+|+|....
T Consensus 17 ~~~~~li~~~~vid~~~--~~~~~~~v~I~~G~I~~ig~~~~-------~~~~viD~~g~~v~PG~ID~H~H~~~~---- 83 (509)
T PRK09061 17 APYDLVIRNGRVVDPET--GLDAVRDVGIKGGKIAAVGTAAI-------EGDRTIDATGLVVAPGFIDLHAHGQSV---- 83 (509)
T ss_pred ccCCEEEECcEEEeCCC--CeeccceEEEECCEEEEecCCCC-------CCCeEEeCCCCEEecCeEeeeeCCCCC----
Confidence 34568999999998553 23345799999999999987431 246899999999999999999997420
Q ss_pred ccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCC-C-CCHHHHHHHHHHcC--CeEEeeccc--
Q 022028 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-G-QHVSEMAKAVELLG--LRACLVQST-- 170 (304)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~-~-~~~~~~~~~~~~~g--ir~~~~~~~-- 170 (304)
+ . ....+..||||+++.. + .......+.....+ +........
T Consensus 84 ---------~---------------~--------~~~~~~~GvTtvv~~~~~~~p~~~~~~~~~~~~~~vn~~~~~~~~~ 131 (509)
T PRK09061 84 ---------A---------------A--------YRMQAFDGVTTALELEAGVLPVARWYAEQAGEGRPLNYGASVGWTP 131 (509)
T ss_pred ---------c---------------c--------chhhccCCceeEEeeccCCCCHHHHHHHHHhcCCcceeehhcCcHH
Confidence 0 0 1124678999998862 2 22333344433333 232211111
Q ss_pred -----ccCCCCCC------------CCcc-cCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHH
Q 022028 171 -----MDCGEGLP------------ASWA-VRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMA 232 (304)
Q Consensus 171 -----~d~g~~~~------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a 232 (304)
+. ++-+. ..+. .....+.+++..+++++..+.+...++.+.. .....+++.+.++++.|
T Consensus 132 ~R~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~m~~ll~~al~~Ga~gis~~~~--y~p~~~~~eL~~l~~~A 208 (509)
T PRK09061 132 ARIAVLT-GPQAEGTIADFGKALGDPRWQERAATPAELAEILELLEQGLDEGALGIGIGAG--YAPGTGHKEYLELARLA 208 (509)
T ss_pred HHHHHhC-CcccccccccccccccccccccCCCCHHHHHHHHHHHHHHHHCCCCEEecCCc--cCCCCCHHHHHHHHHHH
Confidence 11 10000 0011 0111234455566666555543333332121 22356888899999999
Q ss_pred HHhCCeeeEEecCChh-----hHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCc
Q 022028 233 REFKTGIHMHVAEIPY-----ENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH 287 (304)
Q Consensus 233 ~~~~~~~~~H~~E~~~-----~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~ 287 (304)
+++|..+.+|+.+... +.+.+.+ .++...+.|. ++.++|++.+..
T Consensus 209 ~~~g~~v~~H~e~~~~~~~~~e~~av~~-------~i~lA~~~G~---rv~IsHlss~g~ 258 (509)
T PRK09061 209 ARAGVPTYTHVRYLSNVDPRSSVDAYQE-------LIAAAAETGA---HMHICHVNSTSL 258 (509)
T ss_pred HHcCCEEEEEecCcccCCchhHHHHHHH-------HHHHHHHhCC---CEEEEeeccCCc
Confidence 9999999999875431 2233332 4555555564 788999988654
No 56
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=99.71 E-value=4e-16 Score=140.72 Aligned_cols=97 Identities=30% Similarity=0.439 Sum_probs=68.0
Q ss_pred ccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhccc
Q 022028 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (304)
Q Consensus 19 ~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~ 98 (304)
++++|+|++|++.+ ..+ +++|.|+||||++|++..+ ...++||++|++|+|||||+|+|...
T Consensus 2 ~~~~i~~~~v~~~~---~~~-~~~i~i~~g~I~~i~~~~~-------~~~~~iDa~g~~v~PG~ID~H~h~~~------- 63 (383)
T PRK15446 2 MEMILSNARLVLPD---EVV-DGSLLIEDGRIAAIDPGAS-------ALPGAIDAEGDYLLPGLVDLHTDNLE------- 63 (383)
T ss_pred ccEEEECcEEEcCC---Cce-eeeEEEECCEEEEecCCCC-------CCCceEeCCCCEEEeCeEEcccCCcc-------
Confidence 45899999999854 344 7899999999999987532 13478999999999999999996531
Q ss_pred CCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecC
Q 022028 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEA 145 (304)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~ 145 (304)
..+.+|.... |+. .++++ .+.++++.+||||+.|+
T Consensus 64 --~~~~p~~~~~-~~~-----~~~~~----~~~~~a~~gG~Tt~~d~ 98 (383)
T PRK15446 64 --KHLAPRPGVD-WPA-----DAALA----AHDAQLAAAGITTVFDA 98 (383)
T ss_pred --cccCCCCCCc-cch-----HHHHH----HHHHHHHhCCccEeeee
Confidence 1222332211 221 12222 23367889999999996
No 57
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=99.71 E-value=1.1e-15 Score=138.61 Aligned_cols=188 Identities=21% Similarity=0.241 Sum_probs=114.1
Q ss_pred EEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCC
Q 022028 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (304)
Q Consensus 21 ~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~ 100 (304)
++|+|++|++++. ..+++|+|+||+|++|++..+.+ ...+.++||++|++|+|||||+|+|+..... .
T Consensus 2 ~~i~~~~v~~~~~----~~~~~v~i~~g~I~~v~~~~~~~---~~~~~~~id~~g~~v~PG~id~H~H~~~~~~-----~ 69 (387)
T cd01308 2 TLIKNAEVYAPEY----LGKKDILIAGGKILAIEDQLNLP---GYENVTVVDLHGKILVPGFIDQHVHIIGGGG-----E 69 (387)
T ss_pred EEEECcEEeCCCC----ccceEEEEECCEEEEEeCCcccc---cCCCCeEEECCCCEEccCeeehhhCcccccC-----C
Confidence 4799999998542 36789999999999999765321 1125689999999999999999999964210 0
Q ss_pred CCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCC-----CCH---HHHHHHHHHcCCeEEeeccccc
Q 022028 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-----QHV---SEMAKAVELLGLRACLVQSTMD 172 (304)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~-----~~~---~~~~~~~~~~gir~~~~~~~~d 172 (304)
..+ ...+++ .++.+++.+|+||++|+.. ... ....+++.+.|+|.+.+..+++
T Consensus 70 ~~~------------~~~~~~-------~~~~~~~~~G~tt~~d~~~~~~~~~~~~~~~~~~~~~~~~Gv~~v~~~~~~~ 130 (387)
T cd01308 70 GGP------------STRTPE-------VTLSDLTTAGVTTVVGCLGTDGISRSMEDLLAKARALEEEGITCFVYTGSYE 130 (387)
T ss_pred Ccc------------cccCHH-------HHHHHHHhCCceEEecCcCCCCCCCCHHHHHHHHHHHHHhCCEEEEEecccC
Confidence 000 012222 2455789999999999762 122 2446666889999988765443
Q ss_pred CCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCC------eeeEEecCC
Q 022028 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKT------GIHMHVAEI 246 (304)
Q Consensus 173 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~------~~~~H~~E~ 246 (304)
.. .. ...+.++.....++.+.. .+ ...+..........+.+.++.+.++..+. .+++|..+.
T Consensus 131 ~~----~~----~~~~~~~~~~~~i~~~~~--~g--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vh~~~~ 198 (387)
T cd01308 131 VP----TR----TITGSIRKDLLLIDKVIG--VG--EIAISDHRSSQPTVEELARIAAEARVGGLLGGKAGIVHIHLGDG 198 (387)
T ss_pred CC----Cc----CchhhHHHHHHHHHHhcC--cc--eEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCc
Confidence 21 11 122333333344555432 12 12222222223455566667777765332 478888876
Q ss_pred hhhHH
Q 022028 247 PYENQ 251 (304)
Q Consensus 247 ~~~~~ 251 (304)
....+
T Consensus 199 ~~~~~ 203 (387)
T cd01308 199 KRALS 203 (387)
T ss_pred hHHHH
Confidence 54443
No 58
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=99.70 E-value=1.2e-15 Score=140.99 Aligned_cols=174 Identities=18% Similarity=0.223 Sum_probs=104.0
Q ss_pred cEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccC
Q 022028 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (304)
Q Consensus 20 ~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~ 99 (304)
+++|+|++|++++ . ..+++|+|+||||++|++..+. ..+.++||++|++|+|||||+|+|+....
T Consensus 1 dl~i~~~~v~~~~---~-~~~~~v~I~~g~I~~i~~~~~~-----~~~~~~iDa~G~~v~PG~ID~H~H~~~~~------ 65 (447)
T cd01315 1 DLVIKNGRVVTPD---G-VREADIAVKGGKIAAIGPDIAN-----TEAEEVIDAGGLVVMPGLIDTHVHINEPG------ 65 (447)
T ss_pred CEEEECCEEECCC---C-ceEeEEEEECCEEEEEeCCCCC-----CCCCeEEECCCCEEeccEeeceeccCCCC------
Confidence 3689999999853 2 3568999999999999875421 13568999999999999999999985310
Q ss_pred CCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC------CHHHHHHHHHHcCCeEEeecccccC
Q 022028 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ------HVSEMAKAVELLGLRACLVQSTMDC 173 (304)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~------~~~~~~~~~~~~gir~~~~~~~~d~ 173 (304)
... .+++.. ..+.++.+||||++++... ..+.+....+.......+...+..
T Consensus 66 ---~~~--------------~e~~~~----~s~aal~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~- 123 (447)
T cd01315 66 ---RTE--------------WEGFET----GTKAAAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWG- 123 (447)
T ss_pred ---ccc--------------cccHHH----HHHHHHhCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCceeeEEEEE-
Confidence 000 112222 2334699999999998521 122222222222111111111100
Q ss_pred CCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcc---cCCCHHHHHHHHHHHHHhCCeeeEEec
Q 022028 174 GEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQI---MNATDRLLLETRDMAREFKTGIHMHVA 244 (304)
Q Consensus 174 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~e~l~~~~~~a~~~~~~~~~H~~ 244 (304)
+ +... .+++.+++. ..+...+++++.+... ...+.+.+.++++.|+++|+++.+|+-
T Consensus 124 ~--~~~~--------~~~ei~~l~----~~G~~giKv~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~vH~e 183 (447)
T cd01315 124 G--LVPG--------NLDQLRPLD----EAGVVGFKCFLCPSGVDEFPAVDDEQLEEAMKELAKTGSVLAVHAE 183 (447)
T ss_pred e--ecCC--------CHHHHHHHH----HcCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHhcCCeEEEEcC
Confidence 0 0110 112222332 2233346666554332 235788899999999999999999963
No 59
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=99.70 E-value=1.9e-16 Score=142.67 Aligned_cols=225 Identities=25% Similarity=0.289 Sum_probs=129.8
Q ss_pred EEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCC
Q 022028 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (304)
Q Consensus 21 ~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~ 100 (304)
++|+|++|++. ....+++|.|+||||++|++..+. +...++||++|++|+|||||+|+|....
T Consensus 1 ~~i~~~~v~~~----~~~~~~~i~i~~g~I~~i~~~~~~-----~~~~~vid~~g~~l~PG~iD~H~H~~~g-------- 63 (374)
T cd00854 1 LIIKNARILTP----GGLEDGAVLVEDGKIVAIGPEDEL-----EEADEIIDLKGQYLVPGFIDIHIHGGGG-------- 63 (374)
T ss_pred CEEEeEEEeCC----CEEcccEEEEECCEEEEecCCCCc-----ccCCcEEECCCCEecccEEEeeecccCC--------
Confidence 36899999974 455788999999999999875432 1245899999999999999999998541
Q ss_pred CCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC-CHHH-------HHHHHHHc-CCeEEeecccc
Q 022028 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-HVSE-------MAKAVELL-GLRACLVQSTM 171 (304)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~-~~~~-------~~~~~~~~-gir~~~~~~~~ 171 (304)
..+. ..+.+++ +.....+++.|||+++++... ..+. ..+..++- |.+.+ + +.
T Consensus 64 ~~~~------------~~~~e~~----~~~~~~~~~~GvTtv~~t~~t~~~~~~~~~l~~~~~~~~~~~g~~~~-g--~h 124 (374)
T cd00854 64 ADFM------------DGTAEAL----KTIAEALAKHGTTSFLPTTVTAPPEEIAKALAAIAEAIAEGQGAEIL-G--IH 124 (374)
T ss_pred CCCC------------CCCHHHH----HHHHHHHHccCcceeeccccCCCHHHHHHHHHHHHHHhhcCCCCeeE-E--Ee
Confidence 1110 0112332 334556889999999987521 1221 11221111 23321 1 12
Q ss_pred cCCCCCCCCcccCChHHHHH-HHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHH--HHHHHHHHHhCCeee-EEecCCh
Q 022028 172 DCGEGLPASWAVRTTDDCIQ-SQKELYAKHHHAADGRIRIWFGIRQIMNATDRLL--LETRDMAREFKTGIH-MHVAEIP 247 (304)
Q Consensus 172 d~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l--~~~~~~a~~~~~~~~-~H~~E~~ 247 (304)
-+||++.+...+....+.++ ...+.++++.....+.+|+. +.+||+. .++.+.++++|+.+. -|..-+.
T Consensus 125 leGP~~~~~~~g~h~~~~~~~~~~~~~~~~~~~~~~~ik~~-------tlaPE~~~~~~~i~~~~~~gi~v~~GH~~a~~ 197 (374)
T cd00854 125 LEGPFISPEKKGAHPPEYLRAPDPEELKKWLEAAGGLIKLV-------TLAPELDGALELIRYLVERGIIVSIGHSDATY 197 (374)
T ss_pred eecCccCcccCCCCCHHHcCCcCHHHHHHHHHhcCCCEEEE-------EECCCCCChHHHHHHHHHCCeEEEeeCCcCCH
Confidence 25666655544443333322 22234444444344667753 3345555 678899999999995 8876443
Q ss_pred hhHHHHHHhcCCCCCHHHHH---------HHhCC----C-CCC--e-eEEEeccCCcchhc
Q 022028 248 YENQVVMDTRKVDHGTVTFL---------DKIEF----L-QNN--L-LSAHTVWVNHTEVN 291 (304)
Q Consensus 248 ~~~~~~~~~~g~~~~~~~~l---------~~~g~----l-~~~--~-~~~H~~~l~~~di~ 291 (304)
.+.....+ .|.+ .++++ ++.|. | .++ . ++.|+.+++++++.
T Consensus 198 ~~~~~a~~-~G~~--~~tH~~n~m~~~~~r~~~~~~a~l~~~~~~~~li~dg~Hv~~~~~~ 255 (374)
T cd00854 198 EQAVAAFE-AGAT--HVTHLFNAMSPLHHREPGVVGAALSDDDVYAELIADGIHVHPAAVR 255 (374)
T ss_pred HHHHHHHH-cCCC--eeeECCCCCCCcCCCCCcHHHHhhcCCCCeEEEEcCCCcCCHHHHH
Confidence 33333332 2432 12221 11111 2 221 2 67899999998876
No 60
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.69 E-value=2.7e-16 Score=141.55 Aligned_cols=218 Identities=14% Similarity=0.126 Sum_probs=120.8
Q ss_pred cccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCCh-hhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhc
Q 022028 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSA-DILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (304)
Q Consensus 18 ~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~-~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g 96 (304)
...+.+.+++.++. ...++++.|+|+||||++|++.. .. +.+.++||++|++|+|||||+|+|+.+...++
T Consensus 9 ~~~~~~~~~~~~~~---~~~i~~~~v~i~~GkI~~vg~~~~~~-----~~~~~viD~~G~~V~PGLID~HtHl~~~~~~~ 80 (406)
T COG1228 9 IAMLATLAGRGLPG---LGIIEDGAVLIEDGKIVAVGPEEIDI-----PAGAEVIDAKGKTVTPGLIDAHTHLGFGGSRG 80 (406)
T ss_pred hhhheeeccccCCC---cceeecceEEEECCEEEEecCcccCC-----CCCCeEEeCCCCEEccceeeccccccccCCcc
Confidence 34567788888764 35667799999999999999873 22 23579999999999999999999998755443
Q ss_pred ccC-----CCCcccccc--ccccCccCC---CChHHHHHHHHHHHHHHHhcCcceeecCCCCCH-----HHHHHHHHHcC
Q 022028 97 IAD-----DVDLMTWLH--DRIWPYESN---MTEEDSYISTLLCGIELIHSGVTCFAEAGGQHV-----SEMAKAVELLG 161 (304)
Q Consensus 97 ~~~-----~~~~~~~l~--~~~~~~~~~---~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-----~~~~~~~~~~g 161 (304)
... +.++...+. ..+++.... .+.......+...+..++..|+|+......... ..+.+.....+
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~gi~~~~~~~~~a~~~g~~~~~~~~l~~~~~~g~~~~e~~~~~g~~~~~e~~~~~~~~~~~ 160 (406)
T COG1228 81 GEFELREAGASYTEILAAGGGILPLDRGFTTARDGGLKATALPRLKRAGSAGVTTGERKSGYGLDLETEGGHLRAAAGLK 160 (406)
T ss_pred chhhhcccCccHHHHHHhcCChhhhHHHHHHHhhcchHHHHHHHHHHHHHcCCcccceeeeecccccccccccchhhhcc
Confidence 211 111111111 011111111 112233344566678888899998754432211 11222222222
Q ss_pred C--eEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCee
Q 022028 162 L--RACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGI 239 (304)
Q Consensus 162 i--r~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~ 239 (304)
. ......... .-.+ .+.......+..++..+.+++..... ++....=..+.....++++++++++.|++.++++
T Consensus 161 ~~~~~~~~~t~~-~~~~-~~~~~~~~r~~~~~g~~~~i~~~a~~--~l~~~~d~~~~~~~fs~~e~~~~l~~a~~~g~~v 236 (406)
T COG1228 161 ESRPVAVGSTPL-AAHG-VPEERKATREAYVAGARLLIKIVATG--GLASFVDAFCEGGQFSPEEIRAVLAAALKAGIPV 236 (406)
T ss_pred ccccccccCccc-cccC-CcccccchHHHHHHHHHHHHHHHHhc--cccchhhccccccccCHHHHHHHHHHHHHCCCce
Confidence 1 000111110 0011 12222223344444444445554432 2221111122335678899999999999999999
Q ss_pred eEEecCCh
Q 022028 240 HMHVAEIP 247 (304)
Q Consensus 240 ~~H~~E~~ 247 (304)
.+|+++..
T Consensus 237 ~~HA~~~~ 244 (406)
T COG1228 237 KAHAHGAD 244 (406)
T ss_pred EEEecccc
Confidence 99987765
No 61
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=99.68 E-value=1.4e-15 Score=136.28 Aligned_cols=196 Identities=19% Similarity=0.206 Sum_probs=121.8
Q ss_pred ccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhccc
Q 022028 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (304)
Q Consensus 19 ~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~ 98 (304)
.+++|+|++|++.+ ..+.+++|.|+||||++|++..+. + .+.++||++|++|+|||||+|+|.....
T Consensus 3 ~~~~i~n~~i~~~~---~~~~~~~i~V~dGkI~~I~~~~~~----~-~~~~viD~~G~~i~PGfID~HvHg~~g~----- 69 (380)
T TIGR00221 3 ESYLLKDIAIVTGN---EVIDNGAVGINDGKISTVSTEAEL----E-PEIKEIDLPGNVLTPGFIDIHIHGCGGV----- 69 (380)
T ss_pred ceEEEEeeEEECCC---CEEeccEEEEECCEEEEEcccccC----C-CCCeEEECCCCEEccceeeeeeccccCc-----
Confidence 34889999999854 566789999999999999875432 1 2457999999999999999999985411
Q ss_pred CCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC-CHH---HHHHHHHH----cCCeEEeeccc
Q 022028 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-HVS---EMAKAVEL----LGLRACLVQST 170 (304)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~-~~~---~~~~~~~~----~gir~~~~~~~ 170 (304)
.+. ..+.+++. .....+++.|||+++..... ..+ ..++...+ ..-...++ +
T Consensus 70 ---~~~------------~~~~e~~~----~~~~~~~~~GvTt~l~t~~t~~~~~~~~~l~~~~~~~~~~~~a~~lG--~ 128 (380)
T TIGR00221 70 ---DTN------------DASFETLE----IMSERLPKSGCTSFLPTLITQPDENIKQAVKNMREYLAKEKNAQALG--L 128 (380)
T ss_pred ---CCC------------CCCHHHHH----HHHHHHHhcCeeEEeeeccCCCHHHHHHHHHHHHHHHhccCCceeee--E
Confidence 110 01233333 33456788999999876422 111 11222211 10001122 2
Q ss_pred ccCCCCCCCCcccCChHHHHH-HHHHHHHHHcCCCCCCeE-EEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChh
Q 022028 171 MDCGEGLPASWAVRTTDDCIQ-SQKELYAKHHHAADGRIR-IWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 248 (304)
Q Consensus 171 ~d~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~ 248 (304)
.-+||++++.+.+.++.+.++ -..+.++++.+...+.++ +.++|.-+ -. .++.+.+.++|+.+. +.++..
T Consensus 129 HlEGPfi~~~~~Gah~~~~i~~p~~~~~~~~~~~~~~~i~~vTlAPE~~--~~----~~~i~~l~~~gi~vs--~GHs~A 200 (380)
T TIGR00221 129 HLEGPFLSPEKKGAHPPEYIREPDVELFKKFLCEAGGVITKVTLAPEED--QH----FELIRHLKDAGIIVS--AGHTNA 200 (380)
T ss_pred eeecCcCChhhcCCCCHHHhhCcCHHHHHHHHHhcCCCEEEEEECCCCC--Ch----HHHHHHHHHCCeEEE--eeCCCC
Confidence 227899999999999988887 344666666654456665 33444321 12 235566777787655 455555
Q ss_pred hHHHHHHh
Q 022028 249 ENQVVMDT 256 (304)
Q Consensus 249 ~~~~~~~~ 256 (304)
..+++.+.
T Consensus 201 ~~~~~~~a 208 (380)
T TIGR00221 201 TYELAKAA 208 (380)
T ss_pred CHHHHHHH
Confidence 56666553
No 62
>PRK13404 dihydropyrimidinase; Provisional
Probab=99.68 E-value=1.9e-15 Score=140.10 Aligned_cols=184 Identities=19% Similarity=0.272 Sum_probs=107.7
Q ss_pred CcccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhc
Q 022028 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (304)
Q Consensus 17 ~~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g 96 (304)
|+.+++|+|++|++.+ .. .+++|+|+||+|++|++..+ .+.++||++|++|+|||||+|+|+......+
T Consensus 2 ~~~d~~i~~~~v~~~~---~~-~~~~i~I~dg~I~~i~~~~~-------~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~ 70 (477)
T PRK13404 2 MAFDLVIRGGTVVTAT---DT-FQADIGIRGGRIAALGEGLG-------PGAREIDATGRLVLPGGVDSHCHIDQPSGDG 70 (477)
T ss_pred CCCcEEEECCEEEcCC---Cc-eEEEEEEECCEEEEecCCCC-------CCCeEEECCCCEEecCEEEeEEcCCccccCC
Confidence 4456889999999854 23 36899999999999986431 2458999999999999999999996521000
Q ss_pred ccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC----CHHHHHHHHHHc-CCeEEeecccc
Q 022028 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ----HVSEMAKAVELL-GLRACLVQSTM 171 (304)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~----~~~~~~~~~~~~-gir~~~~~~~~ 171 (304)
+ ...+++... ...++..||||++++... .....++..... .-+.++
T Consensus 71 ------~--------------~~~e~~~~~----s~aa~~gGvTtv~~~~~~~~~~~~~~~l~~~~~~~~~~~~v----- 121 (477)
T PRK13404 71 ------I--------------MMADDFYTG----TVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAGKAVI----- 121 (477)
T ss_pred ------c--------------cccchHHHH----HHHHHcCCccEEEEccCCCCCCCHHHHHHHHHHHhccCcEE-----
Confidence 0 012333332 334568999999997532 122222222211 111111
Q ss_pred cCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChh
Q 022028 172 DCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 248 (304)
Q Consensus 172 d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~ 248 (304)
+.+....... ...+...++..++. ..+...+|+++.... ...+++.+.++++.|+++|.++.+|+ |...
T Consensus 122 d~~~~~~~~~--~~~~~~~~~v~~l~----~~G~~~iKi~~~~~~-~~~~~~~l~~~~~~a~~~g~~V~~Ha-e~~~ 190 (477)
T PRK13404 122 DYAFHLIVAD--PTEEVLTEELPALI----AQGYTSFKVFMTYDD-LKLDDRQILDVLAVARRHGAMVMVHA-ENHD 190 (477)
T ss_pred EEEEEEEecC--CChhhHHHHHHHHH----HcCCCEEEEEecCCC-CCCCHHHHHHHHHHHHhcCCEEEEEe-CCHH
Confidence 1110000000 00111112333332 233456776654222 45678889999999999999999996 5443
No 63
>PRK13985 ureB urease subunit beta; Provisional
Probab=99.68 E-value=4.4e-15 Score=135.67 Aligned_cols=179 Identities=20% Similarity=0.269 Sum_probs=110.7
Q ss_pred CCCCCCCCCCCcccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhh-------hcCCCceEEeCCCCEee
Q 022028 7 GGGSSSGSLGSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQ-------FSQMADQIIDLQSQILL 79 (304)
Q Consensus 7 ~~~~~~~~~~~~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~-------~~~~~~~vID~~g~iv~ 79 (304)
|+++++.......+++|+|++|++.. .+ ..++|.|+||||++|++..++... ....+.++||++|++|+
T Consensus 53 g~~~~~~~~~~~~DlVI~Na~IiD~~---gi-~kaDI~IkdGrIaaIG~~gn~~~~~~v~~~~~ig~~tevIDa~G~iV~ 128 (568)
T PRK13985 53 GMSQSNNPSKEELDLIITNALIIDYT---GI-YKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVT 128 (568)
T ss_pred CCCCCCCCCCCcCCEEEECeEEECCC---Cc-EEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEECCCCEEE
Confidence 44554443334567899999999732 33 467999999999999975432100 00135689999999999
Q ss_pred ccccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCC-----C------
Q 022028 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-----Q------ 148 (304)
Q Consensus 80 PG~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~-----~------ 148 (304)
|||||+|+|+.. |... ..++.+||||+.+.+. .
T Consensus 129 PG~ID~HvH~~~----------------------------P~~~--------~~AlagGVTTvI~~G~gP~~~T~p~~~t 172 (568)
T PRK13985 129 AGGIDTHIHFIS----------------------------PQQI--------PTAFASGVTTMIGGGTGPADGTNATTIT 172 (568)
T ss_pred eCEEEeeCCCCC----------------------------ccHH--------HHHhcCceEEEEccCcCCCCCCCCcCCC
Confidence 999999999832 1111 2378999999998421 0
Q ss_pred ----CHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHH
Q 022028 149 ----HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRL 224 (304)
Q Consensus 149 ----~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~ 224 (304)
....+.+.++...+...+ . +.+.. ..+++..++++. |.+ ++..+..+..++..
T Consensus 173 pg~~~i~~ml~~a~~~pvn~gf----~--gkG~~---------~~l~eL~el~~a------GA~--GfK~~ed~g~t~~~ 229 (568)
T PRK13985 173 PGRRNLKWMLRAAEEYSMNLGF----L--GKGNS---------SNDASLADQIEA------GAI--GFKIHEDWGTTPSA 229 (568)
T ss_pred CcHHHHHHHHHHhhccCccEEE----e--cCCcc---------CCHHHHHHHHHc------CCE--EEEECCccCCCHHH
Confidence 123444554544433211 1 11110 111223333321 322 33344445678999
Q ss_pred HHHHHHHHHHhCCeeeEEecCChhh
Q 022028 225 LLETRDMAREFKTGIHMHVAEIPYE 249 (304)
Q Consensus 225 l~~~~~~a~~~~~~~~~H~~E~~~~ 249 (304)
+..++++|++++.++.+|+ ++.++
T Consensus 230 I~~aL~vA~~~dv~V~iHt-dtlne 253 (568)
T PRK13985 230 INHALDVADKYDVQVAIHT-DTLNE 253 (568)
T ss_pred HHHHHHHHHHcCCEEEEeC-CCCCC
Confidence 9999999999999999996 44443
No 64
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=99.67 E-value=2.4e-15 Score=137.90 Aligned_cols=176 Identities=19% Similarity=0.241 Sum_probs=108.2
Q ss_pred CCCCCCCCC--CCcccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhh-------hhcCCCceEEeCCCCE
Q 022028 7 GGGSSSGSL--GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQ-------QFSQMADQIIDLQSQI 77 (304)
Q Consensus 7 ~~~~~~~~~--~~~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~-------~~~~~~~~vID~~g~i 77 (304)
|+++++... ....+++|+|++|+++.. . +..++|.|+||||++|++..++.. ...+.+.++||++|++
T Consensus 54 g~~~~~~~~~~~~~~DlVItNa~IIDp~~--G-i~kaDIgIkDGrIaaIG~~~npd~~~gv~p~~~~g~~teVIDaeG~I 130 (569)
T PRK13308 54 GMGMAPGVTSADGALDFVLCNVTVIDPVL--G-IVKGDIGIRDGRIVGIGKAGNPDIMDGVDPRLVVGPGTDVRPAEGLI 130 (569)
T ss_pred CCCCCCCCCCccCcCCEEEECeEEEcCCC--C-eEEeEEEEECCEEEEecCCCCccccccccccccCCCCCeEEECCCCE
Confidence 455544433 224568999999997432 3 357899999999999997542210 0011356899999999
Q ss_pred eeccccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCC--C------C-
Q 022028 78 LLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG--G------Q- 148 (304)
Q Consensus 78 v~PG~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~--~------~- 148 (304)
|+|||||+|+|+.. +... ..++.+||||+++.+ + .
T Consensus 131 VtPG~ID~HVH~~~----------------------------Pg~~--------~aALagGVTTVi~gg~gPt~p~~t~g 174 (569)
T PRK13308 131 ATPGAIDVHVHFDS----------------------------AQLV--------DHALASGITTMLGGGLGPTVGIDSGG 174 (569)
T ss_pred EEeCEEEeeeCCCC----------------------------ccHH--------HHHHcCCCcEEecCCcCCCCCCCCCC
Confidence 99999999999843 0000 357899999999742 1 1
Q ss_pred --CHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHH
Q 022028 149 --HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLL 226 (304)
Q Consensus 149 --~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~ 226 (304)
....+.++++...+...+ . +.+.. ...+...++++ . |.+ ++..+.-+..+++.+.
T Consensus 175 ~~~i~~~l~aa~~~pvN~g~----~--gkG~~---------s~~aeL~eli~----a--GA~--GfKi~ed~g~t~~~i~ 231 (569)
T PRK13308 175 PFNTGRMLQAAEAWPVNFGF----L--GRGNS---------SKPAALIEQVE----A--GAC--GLKIHEDWGAMPAAID 231 (569)
T ss_pred HHHHHHHHHHHhcCCccEEE----E--cCCcc---------cCHHHHHHHHH----C--CCC--EEeecCCCCCCHHHHH
Confidence 133445554443333211 1 11110 01122333332 1 222 2223333456889999
Q ss_pred HHHHHHHHhCCeeeEEec
Q 022028 227 ETRDMAREFKTGIHMHVA 244 (304)
Q Consensus 227 ~~~~~a~~~~~~~~~H~~ 244 (304)
++++.|+++++++.+|+.
T Consensus 232 ~aL~~A~~~dv~VaiHad 249 (569)
T PRK13308 232 TCLEVADEYDFQVQLHTD 249 (569)
T ss_pred HHHHHHHhcCCEEEEeCC
Confidence 999999999999999963
No 65
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=99.67 E-value=8.5e-15 Score=134.24 Aligned_cols=179 Identities=21% Similarity=0.263 Sum_probs=110.5
Q ss_pred CCCCCCCCC-CCcccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhh-------hhcCCCceEEeCCCCEe
Q 022028 7 GGGSSSGSL-GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQ-------QFSQMADQIIDLQSQIL 78 (304)
Q Consensus 7 ~~~~~~~~~-~~~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~-------~~~~~~~~vID~~g~iv 78 (304)
|+++++... ....+++|+|++|++.. .+ ..++|.|+||||++|++..++.. ...+.+.++||++|++|
T Consensus 52 g~~~~~~~~~~~~~DlVI~Na~IiD~~---gi-~~adI~IkdGrIvaIG~agnp~~~~~v~~~~~~g~~teVIDaeG~iV 127 (567)
T cd00375 52 GMGQSSGYTREDVLDLVITNALIIDYT---GI-YKADIGIKDGRIVAIGKAGNPDIMDGVTPNMIVGPSTEVIAGEGKIV 127 (567)
T ss_pred CCCCCCCCCccccCCEEEECeEEECCC---Cc-EEEEEEEECCEEEEEecCCCccccccccccccCCCCCeEEECCCCEE
Confidence 455554443 22456899999999743 23 46899999999999987642110 01123568999999999
Q ss_pred eccccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecC--CC---------
Q 022028 79 LPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEA--GG--------- 147 (304)
Q Consensus 79 ~PG~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~--~~--------- 147 (304)
+|||||+|+|+.. |.. ...++.+||||+.++ .+
T Consensus 128 ~PG~ID~HvH~~~----------------------------P~~--------~~aAlagGVTTvI~~G~gP~~gtnatp~ 171 (567)
T cd00375 128 TAGGIDTHVHFIC----------------------------PQQ--------IEEALASGITTMIGGGTGPAAGTKATTC 171 (567)
T ss_pred eeceEECccCCCC----------------------------ccH--------HHHHHcCCCcEEEcCCcCcccccCCCCC
Confidence 9999999999732 111 135789999999985 11
Q ss_pred ----CCHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHH
Q 022028 148 ----QHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDR 223 (304)
Q Consensus 148 ----~~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e 223 (304)
+....+.+.++...+...+.. .+ . ...++...++++. |.+ ++..+.-+..++.
T Consensus 172 t~g~~~l~~ml~aa~~~pin~g~~g----kg--~---------~~~l~eL~e~~~a------GA~--GfK~~eD~g~t~~ 228 (567)
T cd00375 172 TPGPWNIKRMLQAADGLPVNIGFLG----KG--N---------GSSPDALAEQIEA------GAC--GLKLHEDWGATPA 228 (567)
T ss_pred CCCHHHHHHHHHHhhcCCceEEEEe----cC--c---------cccHHHHHHHHHc------CCE--EEEecCCCCCCHH
Confidence 112344555554443332110 11 0 0111222233221 322 2333334567899
Q ss_pred HHHHHHHHHHHhCCeeeEEecCChhh
Q 022028 224 LLLETRDMAREFKTGIHMHVAEIPYE 249 (304)
Q Consensus 224 ~l~~~~~~a~~~~~~~~~H~~E~~~~ 249 (304)
.+.++++.|++++..+.+|. ++.++
T Consensus 229 ~i~~aL~~A~~~dv~VaiHa-dtlne 253 (567)
T cd00375 229 AIDTCLSVADEYDVQVAIHT-DTLNE 253 (567)
T ss_pred HHHHHHHHHHhhCCEEEEEC-CCCCc
Confidence 99999999999999999996 44443
No 66
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=99.67 E-value=6e-15 Score=135.80 Aligned_cols=179 Identities=19% Similarity=0.244 Sum_probs=107.1
Q ss_pred CCCCCCCCCC-CcccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhh-------hhcCCCceEEeCCCCEe
Q 022028 7 GGGSSSGSLG-SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQ-------QFSQMADQIIDLQSQIL 78 (304)
Q Consensus 7 ~~~~~~~~~~-~~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~-------~~~~~~~~vID~~g~iv 78 (304)
|+++++.... ...+++|+|++|++.. .+ ..++|.|+||||++|++..++.. .+...+.++||++|++|
T Consensus 58 g~~~~~~~~~~~~~DlVI~Na~IiD~~---gi-~~adI~IkDGrIvaIG~~~~p~~~~gv~~~~~ig~~tevIDaeG~iV 133 (573)
T PRK13206 58 SMGQGRATRAEGAPDTVITGAVILDHW---GI-VKADVGIRDGRIVAIGKAGNPDIMDGVHPDLVIGPSTEIIAGNGRIL 133 (573)
T ss_pred ccCccCCCCCCCCCCEEEECeEEECCC---Ce-EEEEEEEECCEEEEEeCCCCccccccccccccCCCCCEEEECCCCEE
Confidence 4455444332 2456899999999743 33 45799999999999997532110 01112468999999999
Q ss_pred eccccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC----------
Q 022028 79 LPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ---------- 148 (304)
Q Consensus 79 ~PG~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~---------- 148 (304)
+|||||+|+|+.. +.. ...++.+||||+++++..
T Consensus 134 ~PG~ID~HVH~~~----------------------------Pg~--------~~aALagGVTTvi~~G~gP~~~t~~~t~ 177 (573)
T PRK13206 134 TAGAIDCHVHFIC----------------------------PQI--------VDEALAAGITTLIGGGTGPAEGSKATTV 177 (573)
T ss_pred EeCEEeeeeccCC----------------------------chH--------HHHHHcCCeEEEEcCCCCccccCccccc
Confidence 9999999999732 111 145789999999985211
Q ss_pred -----CHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHH
Q 022028 149 -----HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDR 223 (304)
Q Consensus 149 -----~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e 223 (304)
....+.+.++...+...+ . +.+ ... . .+...++++ .+.-.+| .+..+..+++
T Consensus 178 t~g~~~l~~~~~aa~~~pvn~g~----~--g~g--~~~---~----~~~L~el~~----aGA~GfK----i~~d~g~t~~ 234 (573)
T PRK13206 178 TPGAWHLARMLEALDGWPVNVAL----L--GKG--NTV---S----AEALWEQLR----GGAGGFK----LHEDWGSTPA 234 (573)
T ss_pred ccchhHHHHHHHHhhcCceeEEE----e--cCc--CcC---C----HHHHHHHHH----CCCcEEe----ecCccCCCHH
Confidence 111233333322222211 0 110 000 0 112223322 2222233 2233568999
Q ss_pred HHHHHHHHHHHhCCeeeEEecCChhh
Q 022028 224 LLLETRDMAREFKTGIHMHVAEIPYE 249 (304)
Q Consensus 224 ~l~~~~~~a~~~~~~~~~H~~E~~~~ 249 (304)
.+.+++++|+++++++.+|. |+.++
T Consensus 235 ~i~~aL~~A~~~gv~V~iHa-dtlne 259 (573)
T PRK13206 235 AIDACLRVADAAGVQVALHS-DTLNE 259 (573)
T ss_pred HHHHHHHHHHHhCCEEEEEC-CCccc
Confidence 99999999999999999996 55554
No 67
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=99.67 E-value=3.9e-15 Score=137.34 Aligned_cols=175 Identities=18% Similarity=0.234 Sum_probs=105.8
Q ss_pred CCCCCCCCC-CCcccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhh-----hhcCCCceEEeCCCCEeec
Q 022028 7 GGGSSSGSL-GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQ-----QFSQMADQIIDLQSQILLP 80 (304)
Q Consensus 7 ~~~~~~~~~-~~~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~-----~~~~~~~~vID~~g~iv~P 80 (304)
|+++++... ....+++|+|++|++.. .+ ..++|.|+||||++|++...+.. ..++.+.++||++|++|+|
T Consensus 54 ~~~~~~~~~~~~~mDlVI~Na~Vvd~~---gi-~~adI~I~dGrI~~IG~~~~p~~~~~v~~~~~~~~eVIDa~G~iV~P 129 (568)
T PRK13207 54 GMGQSQRARADGAVDTVITNALILDHW---GI-VKADIGIKDGRIVAIGKAGNPDIQDGVDIIIGPGTEVIAGEGLIVTA 129 (568)
T ss_pred ccCcCCCCCccccCCEEEECeEEECCC---Ce-EEEEEEEECCEEEEEeCCCCccccccccccCCCCCeEEECCCCEEEe
Confidence 445555543 22356899999999742 33 47899999999999987532110 0011356899999999999
Q ss_pred cccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC-----C------
Q 022028 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----H------ 149 (304)
Q Consensus 81 G~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~-----~------ 149 (304)
||||+|+|+.. +.. ...++.+||||+++++.. .
T Consensus 130 G~ID~HvH~~~----------------------------P~~--------~~aALagGVTTVi~mg~gP~~gt~~~t~tp 173 (568)
T PRK13207 130 GGIDTHIHFIC----------------------------PQQ--------IEEALASGVTTMIGGGTGPATGTNATTCTP 173 (568)
T ss_pred CeEECccCCcc----------------------------ccH--------HHHHHcCCCCEEEcCCcCCccCCccccccc
Confidence 99999999743 111 145789999999986311 0
Q ss_pred ----HHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHH
Q 022028 150 ----VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLL 225 (304)
Q Consensus 150 ----~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l 225 (304)
...+.+.++...+...+ ...+ + ...++..+++++. +...+|+. ..+..+++.+
T Consensus 174 G~~~l~~~l~~a~~~pin~g~----~g~g------~-----~~~~~~L~e~i~a----GA~gfKi~----~d~g~t~~~l 230 (568)
T PRK13207 174 GPWHIHRMLQAADAFPMNIGF----LGKG------N-----ASLPEALEEQIEA----GAIGLKLH----EDWGATPAAI 230 (568)
T ss_pred chHHHHHHHHHhhcCCceEEE----EcCC------C-----cccHHHHHHHHHc----CCCEEeec----CCCCCCHHHH
Confidence 12222332322222111 0001 0 0112233333322 22233322 2345688999
Q ss_pred HHHHHHHHHhCCeeeEEec
Q 022028 226 LETRDMAREFKTGIHMHVA 244 (304)
Q Consensus 226 ~~~~~~a~~~~~~~~~H~~ 244 (304)
.++++.|+++++++.+|+.
T Consensus 231 ~~aL~~A~~~gv~V~iHa~ 249 (568)
T PRK13207 231 DNCLSVADEYDVQVAIHTD 249 (568)
T ss_pred HHHHHHHHHhCCEEEEeCC
Confidence 9999999999999999973
No 68
>PRK06886 hypothetical protein; Validated
Probab=99.66 E-value=2.9e-15 Score=131.32 Aligned_cols=197 Identities=16% Similarity=0.109 Sum_probs=125.1
Q ss_pred cccccCccchhhhhhccc-----CCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCC-------C
Q 022028 81 GFVNTHVHTSQQLAKGIA-----DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-------Q 148 (304)
Q Consensus 81 G~ID~H~Hl~~s~~~g~~-----~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~-------~ 148 (304)
||||.|+|++.+..-+.. ...++.+.+.. .......++.++++.++..++..++..|+|.++.+-. .
T Consensus 21 gfv~~H~HlDk~~~~~~~~~~~~~~g~l~e~i~~-~~~~k~~~t~~dv~~Ra~~~l~~~~~~Gtt~iRtHvdvd~~~~l~ 99 (329)
T PRK06886 21 GWVNAHAHADRAFTMTPEKIAIYHYANLQQKWDL-VDEVKRNSTVEDYYARFSQAIELMISQGVTAFGTFVDIDPICEDR 99 (329)
T ss_pred CCccccccccccccCCCccccccCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHHHHHHHHcCcccEeeeeccCCCcccc
Confidence 899999999997754431 23455443321 1123456789999999999999999999999975431 2
Q ss_pred CHHHHHHHHHHcCCeEEeecccc-cCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCc---ccCCCHHH
Q 022028 149 HVSEMAKAVELLGLRACLVQSTM-DCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQ---IMNATDRL 224 (304)
Q Consensus 149 ~~~~~~~~~~~~gir~~~~~~~~-d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~e~ 224 (304)
..+.+.++.++..-+.-+....+ .+| + ..... ++++++.... .+.+. ++ |+. ....+++.
T Consensus 100 ~~~a~~~~r~~~~~~idlq~vafPq~g--~----~~~~~-------~~l~~~al~~-advvG-Gi-P~~~~~~~~~~~e~ 163 (329)
T PRK06886 100 AIIAAHKAREVYKHDIILKFANQTLKG--V----IEPTA-------KKWFDIGSEM-VDMIG-GL-PYRDELDYGRGLEA 163 (329)
T ss_pred HHHHHHHHHHHhcCcceEEEEecChhh--c----cCccH-------HHHHHHHHHh-CCEEe-Cc-cCCcCCCCCCCHHH
Confidence 24455555555544332221111 011 1 11111 1222222111 13332 22 443 23678899
Q ss_pred HHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcch-------hc------
Q 022028 225 LLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE-------VN------ 291 (304)
Q Consensus 225 l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~d-------i~------ 291 (304)
++.++++|+++|+++++|++|+.++.....+.+ .+...+.|+++ +++++||++|++.| ++
T Consensus 164 l~~~~~lA~~~g~~Id~Hlde~~~~~~~~le~l------~~~~~~~Gl~g-rV~~sH~~~L~~~~~~~~~~~i~~La~ag 236 (329)
T PRK06886 164 MDILLDTAKSLGKMVHVHVDQFNTPKEKETEQL------CDKTIEHGMQG-RVVAIHGISIGAHSKEYRYRLYQKMREAD 236 (329)
T ss_pred HHHHHHHHHHcCCCeEEeECCCCchhHHHHHHH------HHHHHHcCCCC-CEEEEEeccccCcChhhHHHHHHHHHHcC
Confidence 999999999999999999999887665544432 23334789976 79999999999887 43
Q ss_pred -----cccccccccc
Q 022028 292 -----CTFGNFKYAV 301 (304)
Q Consensus 292 -----~p~sN~~l~~ 301 (304)
||.||++|+.
T Consensus 237 i~Vv~~P~snl~l~~ 251 (329)
T PRK06886 237 MMVIACPMAWIDSNR 251 (329)
T ss_pred CeEEECchhhhhhcc
Confidence 9999987654
No 69
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=99.64 E-value=2.1e-14 Score=129.08 Aligned_cols=197 Identities=16% Similarity=0.087 Sum_probs=119.2
Q ss_pred EEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCC
Q 022028 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (304)
Q Consensus 21 ~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~ 100 (304)
++|+|++|++.+ +++.+++|+|+||||++|++..+. + .+.++||++|++|+|||||+|+|....
T Consensus 2 ~~i~n~~i~~~~---~~~~~~~v~IedgkI~~I~~~~~~----~-~~~~~ID~~G~~l~PG~ID~HvHG~~g-------- 65 (382)
T PRK11170 2 YALTNGRIYTGH---EVLDDHAVVIADGLIEAVCPVAEL----P-PGIEQRDLNGAILSPGFIDLQLNGCGG-------- 65 (382)
T ss_pred EEEEeeEEECCC---CeEeCCEEEEECCEEEEecCCccC----C-CCCeEEeCCCCEEccceeeeeecCccC--------
Confidence 678999999865 567788999999999999875431 1 244799999999999999999998541
Q ss_pred CCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC-CHHH---HHHHHHHc---CCeEEeecccccC
Q 022028 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-HVSE---MAKAVELL---GLRACLVQSTMDC 173 (304)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~-~~~~---~~~~~~~~---gir~~~~~~~~d~ 173 (304)
..+. ......+.+. .+.....+++.|||+++..... ..+. .++...+. +-...++ +.-+
T Consensus 66 ~~~~--------~~~~~~~~~~----l~~~~~~~~~~GvTt~lpT~it~~~~~~~~~l~~~~~~~~~~~a~~~G--~HlE 131 (382)
T PRK11170 66 VQFN--------DTAEAISVET----LEIMQKANEKSGCTSFLPTLITSSDELMKQAVRVMREYLAKHPNQALG--LHLE 131 (382)
T ss_pred cccc--------cCccCCCHHH----HHHHHHHHHhcCEeEEeeeccCCCHHHHHHHHHHHHHHHhcCCCeEEE--EEee
Confidence 1110 0000112222 2233344789999999876421 1222 22222211 1011122 2227
Q ss_pred CCCCCCCcccCChHHHHH-HHHHHHHHHcCCCCCCeE-EEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHH
Q 022028 174 GEGLPASWAVRTTDDCIQ-SQKELYAKHHHAADGRIR-IWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQ 251 (304)
Q Consensus 174 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~ 251 (304)
||++++.+.+.+.+++++ -..+.++.+.+.. +.++ +.++|. .. . . ++.+.+.++|+.+.+ .++....+
T Consensus 132 GPfi~~~~~Gah~~~~~~~p~~~~~~~~~~~~-~~i~~iTlAPE-~~--~---~-~~i~~l~~~gi~vs~--GHs~A~~~ 201 (382)
T PRK11170 132 GPYLNLVKKGTHNPEFIRKPDAEMVDFLCENA-DVITKVTLAPE-MV--D---A-EVIRKLVEAGIVVSA--GHSNATYE 201 (382)
T ss_pred cCCCCcccCCCCCHHHhcCcCHHHHHHHHhcc-CCEEEEEECCC-CC--c---H-HHHHHHHHCCcEEEe--eCCcCCHH
Confidence 898999998888888877 3445666666544 4454 445553 11 1 2 456667777877654 45555566
Q ss_pred HHHHhc
Q 022028 252 VVMDTR 257 (304)
Q Consensus 252 ~~~~~~ 257 (304)
++.+.+
T Consensus 202 ~~~~a~ 207 (382)
T PRK11170 202 EAKAGF 207 (382)
T ss_pred HHHHHH
Confidence 555543
No 70
>PRK07575 dihydroorotase; Provisional
Probab=99.64 E-value=3.6e-15 Score=137.10 Aligned_cols=95 Identities=27% Similarity=0.416 Sum_probs=68.9
Q ss_pred cccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcc
Q 022028 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (304)
Q Consensus 18 ~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~ 97 (304)
|.+++|+|++|++.+ .....++|.|+||||.+|++..+. +.+.++||++|++|+|||||+|+|+... +
T Consensus 2 ~~~~~i~~~~i~~~~---~~~~~~~I~I~dg~I~~ig~~~~~-----~~~~~vid~~g~~v~PG~ID~H~H~~~~---~- 69 (438)
T PRK07575 2 MMSLLIRNARILLPS---GELLLGDVLVEDGKIVAIAPEISA-----TAVDTVIDAEGLTLLPGVIDPQVHFREP---G- 69 (438)
T ss_pred cceEEEECCEEECCC---CCEEeeeEEEECCEEEEecCCCCC-----CCCCeEEECCCCEEcccEEEeeeccCCC---C-
Confidence 446789999999854 223568999999999999875321 1135899999999999999999996421 0
Q ss_pred cCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCC
Q 022028 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG 147 (304)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~ 147 (304)
.-+.|+++..++ .++++||||++|+..
T Consensus 70 -------------------~~~~e~~~~~~~----aa~~gGvTt~~dmp~ 96 (438)
T PRK07575 70 -------------------LEHKEDLFTASR----ACAKGGVTSFLEMPN 96 (438)
T ss_pred -------------------CcCcchHHHHHH----HHHhCCEEEEEECCC
Confidence 012345555444 358999999999753
No 71
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.64 E-value=6.8e-15 Score=131.06 Aligned_cols=192 Identities=17% Similarity=0.156 Sum_probs=107.0
Q ss_pred eEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCCCCccccccccccCccCCCChH
Q 022028 42 GVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEE 121 (304)
Q Consensus 42 ~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e 121 (304)
+|+|+||||++|++.... +.+.++||++|++|+|||||+|+|+...... ...+
T Consensus 1 ~i~i~~g~I~~i~~~~~~-----~~~~~~id~~g~~v~PG~iD~H~H~~~~g~~--------------------~~~~-- 53 (338)
T cd01307 1 DVAIENGKIAAVGAALAA-----PAATQIVDAGGCYVSPGWIDLHVHVYQGGTR--------------------YGDR-- 53 (338)
T ss_pred CEEEECCEEEEccCCCCC-----CCCCeEEECCCCEEecCeEEeeecCCCCCcc--------------------cCCC--
Confidence 589999999999985431 1246899999999999999999999653210 0001
Q ss_pred HHHHHHHHHHHHHHhcCcceeecCCCC---CHHHHHHHH-HHcCCeEEeecccccCCCCCCCCcccCChHH-HHHHHHHH
Q 022028 122 DSYISTLLCGIELIHSGVTCFAEAGGQ---HVSEMAKAV-ELLGLRACLVQSTMDCGEGLPASWAVRTTDD-CIQSQKEL 196 (304)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~---~~~~~~~~~-~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~-~~~~~~~~ 196 (304)
....++..|+||++|+... ......+.. ...+.+......+.-.|...++.+. .... ..+...+.
T Consensus 54 --------~~~~a~~~GvTtvvd~~~~~~~~~~~~~~~~~~~~~~~v~a~~~~~~~g~~~~~~~~--~~~~~~~~~l~~~ 123 (338)
T cd01307 54 --------PDMIGVKSGVTTVVDAGSAGADNIDGFRYTVIERSATRVYAFLNISRVGLVAQDELP--DPDNIDEDAVVAA 123 (338)
T ss_pred --------HhHHHHcCceeEEEeCCCCCCCCHHHHHHHHHHhhhceEEEEEeeeccccccccccC--ChhHCCHHHHHHH
Confidence 1123688999999987632 223323333 3444432221111111111111111 1111 11222233
Q ss_pred HHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCC
Q 022028 197 YAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNN 276 (304)
Q Consensus 197 ~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~ 276 (304)
+++... +-..+++++..+.......+.+++..+++++.|+++.+|+.+...+.+.+.+ ++.+.
T Consensus 124 ~~e~~~-gi~gik~~~~~~~~~~~~~~~l~~~~~~a~~~~~pi~vH~~~~~~~~~~~~~----------------~l~~g 186 (338)
T cd01307 124 AREYPD-VIVGLKARASKSVVGEWGIKPLELAKKIAKEADLPLMVHIGSPPPILDEVVP----------------LLRRG 186 (338)
T ss_pred HHHCcC-cEEEEEEEeecccccccCCcHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHH----------------HhcCC
Confidence 322221 1112566555444332233338889999999999999999776654332221 13444
Q ss_pred eeEEEeccCCc
Q 022028 277 LLSAHTVWVNH 287 (304)
Q Consensus 277 ~~~~H~~~l~~ 287 (304)
..+.||++.+.
T Consensus 187 ~~~~H~~~g~~ 197 (338)
T cd01307 187 DVLTHCFNGKP 197 (338)
T ss_pred CEEEeccCCCC
Confidence 57999999765
No 72
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=99.64 E-value=3.8e-14 Score=130.85 Aligned_cols=72 Identities=35% Similarity=0.582 Sum_probs=60.7
Q ss_pred CCcccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccch
Q 022028 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTS 90 (304)
Q Consensus 16 ~~~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~ 90 (304)
+|+.++++.|++|+|++.+... ...|.|+||||++||+..+....+. ...++||++|++|+|||||+|.|+.
T Consensus 2 ~~~adlil~nG~i~T~~~~~p~--aeAvaI~dGrI~avG~~~~~~~~~~-~~t~viDL~Gk~v~PGfvDaH~Hl~ 73 (535)
T COG1574 2 AMAADLILHNGRIYTMDEARPT--AEAVAIKDGRIVAVGSDAELKALAG-PATEVIDLKGKFVLPGFVDAHLHLI 73 (535)
T ss_pred CcccceeEECCEEEeccCCCcc--eeEEEEcCCEEEEEcChHHHHhhcC-CCceEEeCCCCEeccccchhhHHHH
Confidence 3567899999999999865333 4589999999999999877665443 4789999999999999999999995
No 73
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=2.8e-14 Score=124.44 Aligned_cols=195 Identities=20% Similarity=0.225 Sum_probs=123.0
Q ss_pred EEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCC
Q 022028 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (304)
Q Consensus 21 ~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~ 100 (304)
..++|++|++.. .++.++.|.|+||+|.+|.+.. . +.+.++||.+|.+++|||||+|+|.+...
T Consensus 2 ~~~~~~~i~t~~---~~~~~~~v~i~dg~I~~i~~~~-~-----p~~~e~id~~G~~l~PGfID~hihG~gG~------- 65 (380)
T COG1820 2 YALKNGRIFTGH---GVLDGGAVVIEDGKIEAVVPAE-L-----PADAEIIDLKGALLVPGFIDLHIHGGGGA------- 65 (380)
T ss_pred ceeeccEEEcCc---ceEECcEEEEcCCEEEEEecCc-C-----CCcceeecCCCCEecccEEEEeecCcCcc-------
Confidence 468999999854 7888999999999999999822 1 24679999999999999999999997632
Q ss_pred CCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCC-CCCHHH---HHHHH---HHcCCeEEeecccccC
Q 022028 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-GQHVSE---MAKAV---ELLGLRACLVQSTMDC 173 (304)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~~~---~~~~~---~~~gir~~~~~~~~d~ 173 (304)
.+.+ .-+.+. ...-....++.|||++.-.. ....+. .++++ ...+...++|..+ +
T Consensus 66 -~~~D-----------~~~~~~----l~~i~~~~~~~GtTsfLpT~iT~~~e~i~~al~~~~e~~~~~ga~ilGiHL--E 127 (380)
T COG1820 66 -DFMD-----------AGSVET----LETMAEAHLRHGTTSFLPTLITASLEKIKAALRAIREAIAKGGAQILGIHL--E 127 (380)
T ss_pred -cccC-----------ccCHHH----HHHHHHHhhhcCeeeeeeecccCCHHHHHHHHHHHHHHHhccCCceEEEEe--e
Confidence 1110 011222 22334557889999986422 122222 22221 1111111222222 8
Q ss_pred CCCCCCCcccCChHHHHH-HHHHHHHHHcCCCCCCeE-EEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHH
Q 022028 174 GEGLPASWAVRTTDDCIQ-SQKELYAKHHHAADGRIR-IWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQ 251 (304)
Q Consensus 174 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~ 251 (304)
||++++...++++++.++ ...+.+++|....++.++ +.++|... -+.|.++ .+.+.|+. +-+.++....+
T Consensus 128 GP~ls~~kkGAh~~~~ir~~~~~~~~~~~~~a~g~i~~vTlAPE~~--~~~e~i~----~l~~~gii--vs~GHS~Atye 199 (380)
T COG1820 128 GPFLSPEKKGAHNPEYIRPPDPEELEQLIAAADGLIKLVTLAPELD--GTKELIR----LLANAGIV--VSIGHSNATYE 199 (380)
T ss_pred cCccCHhhccCCCHHHhCCCCHHHHHHHHhhccCceEEEEECCCCC--CCHHHHH----HHHhCCeE--EEecCccccHH
Confidence 999999999999999987 566777888776666553 45555322 1444443 44445654 44566666666
Q ss_pred HHHHhc
Q 022028 252 VVMDTR 257 (304)
Q Consensus 252 ~~~~~~ 257 (304)
..++.+
T Consensus 200 ~~~~a~ 205 (380)
T COG1820 200 QARAAF 205 (380)
T ss_pred HHHHHH
Confidence 666644
No 74
>PRK07627 dihydroorotase; Provisional
Probab=99.61 E-value=9.3e-14 Score=127.01 Aligned_cols=65 Identities=23% Similarity=0.361 Sum_probs=52.4
Q ss_pred cEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchh
Q 022028 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (304)
Q Consensus 20 ~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~ 91 (304)
+++|+|++|+++.. ....+++|+|+||||++|++.... ..+.++||++|++|+|||||+|+|+..
T Consensus 2 ~~~i~~~~v~~~~~--~~~~~~~I~I~~g~I~~i~~~~~~-----~~~~~~iDa~g~~vlPG~iD~H~H~~~ 66 (425)
T PRK07627 2 KIHIKGGRLIDPAA--GTDRQADLYVAAGKIAAIGQAPAG-----FNADKTIDASGLIVCPGLVDLSARLRE 66 (425)
T ss_pred eEEEEeeEEECCCC--CccceeEEEEECCEEEEecCCCcC-----CCCCeEEECCCCEEeccEEeccccccC
Confidence 47899999997653 234678999999999999875321 135689999999999999999999954
No 75
>PRK09236 dihydroorotase; Reviewed
Probab=99.59 E-value=4.7e-14 Score=130.04 Aligned_cols=65 Identities=31% Similarity=0.547 Sum_probs=51.3
Q ss_pred cccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchh
Q 022028 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (304)
Q Consensus 18 ~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~ 91 (304)
|++++|+|++|++.+ .+ ..++|+|+||+|++|++.... ..+.++||++|++|+|||||+|+|+..
T Consensus 1 ~~~~~i~~~~v~~~~---~~-~~~~i~i~~g~I~~i~~~~~~-----~~~~~~id~~g~~v~PG~ID~HvH~~~ 65 (444)
T PRK09236 1 MKRILIKNARIVNEG---KI-FEGDVLIENGRIAKIASSISA-----KSADTVIDAAGRYLLPGMIDDQVHFRE 65 (444)
T ss_pred CccEEEECCEEEcCC---Cc-eEeEEEEECCEEEEecCCCCC-----CCCCeEEECCCCEECCCEEEccccccc
Confidence 355789999999843 33 357899999999999865321 124589999999999999999999743
No 76
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=99.59 E-value=1.7e-13 Score=123.29 Aligned_cols=59 Identities=31% Similarity=0.521 Sum_probs=48.2
Q ss_pred EEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchh
Q 022028 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (304)
Q Consensus 22 li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~ 91 (304)
+|+|++|++.+ .++. ++|.|+||||++|++... ...++||++|++|+|||||+|+|...
T Consensus 1 ~i~~~~vv~~~---~~~~-~~i~i~dg~I~~i~~~~~-------~~~~~iD~~G~~v~PGlID~H~h~~e 59 (376)
T TIGR02318 1 VLSNARLVLED---EVVE-GSVVIEDGAIADIGEGPV-------ALAEAIDGEGDLLLPGLIDLHTDNLE 59 (376)
T ss_pred CEeCeEEECCC---ceEe-eeEEEECCEEEEecCCCC-------CCCceEeCCCCEEeccEEEcccCccc
Confidence 48999999755 3554 499999999999987432 14568999999999999999999864
No 77
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=99.59 E-value=2.6e-13 Score=126.55 Aligned_cols=73 Identities=14% Similarity=0.075 Sum_probs=56.0
Q ss_pred cCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHH-HHHhCCCCCCeeEEEeccCCcchhc-----
Q 022028 218 MNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTF-LDKIEFLQNNLLSAHTVWVNHTEVN----- 291 (304)
Q Consensus 218 ~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~-l~~~g~l~~~~~~~H~~~l~~~di~----- 291 (304)
..++++.++++++.|+++|+++++|+.+ ....+.+.+. ++. ..+.|+++.+..++||..+++++++
T Consensus 290 ~~~~~e~l~~~~~~a~~~g~~v~~Ha~g-d~~i~~~l~~-------~~~~~~~~g~~~~r~~i~H~~~~~~~~~~~l~~~ 361 (479)
T cd01300 290 LLISPEELEELVRAADEAGLQVAIHAIG-DRAVDTVLDA-------LEAALKDNPRADHRHRIEHAQLVSPDDIPRFAKL 361 (479)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEec-HHHHHHHHHH-------HHHHHHhcCCCCCCceeeecccCCHHHHHHHHHc
Confidence 4578999999999999999999999864 4445544442 232 3345777888999999999999887
Q ss_pred ------ccccccc
Q 022028 292 ------CTFGNFK 298 (304)
Q Consensus 292 ------~p~sN~~ 298 (304)
||..+.+
T Consensus 362 gv~~~~~P~~~~~ 374 (479)
T cd01300 362 GVIASVQPNHLYS 374 (479)
T ss_pred CCceEeCcccccC
Confidence 7776654
No 78
>PRK02382 dihydroorotase; Provisional
Probab=99.58 E-value=3.2e-13 Score=124.52 Aligned_cols=177 Identities=18% Similarity=0.216 Sum_probs=102.5
Q ss_pred cccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcc
Q 022028 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (304)
Q Consensus 18 ~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~ 97 (304)
|.+++|+|++|++.+ . +.+++|+|+||||++|++..+. +.+.++||++|++|+|||||+|+|+.....
T Consensus 1 ~~dl~i~n~~v~~~~---~-~~~~~v~I~dg~I~~i~~~~~~-----~~~~~~id~~g~~v~PG~ID~H~H~~~~g~--- 68 (443)
T PRK02382 1 MRDALLKDGRVYYNN---S-LQPRDVRIDGGKITAVGKDLDG-----SSSEEVIDARGMLLLPGGIDVHVHFREPGY--- 68 (443)
T ss_pred CceEEEECCEEEeCC---C-ceEEEEEEECCEEEEecCCCCC-----CCCCeEEECCCCEEcCCEeeeeeeccCCCC---
Confidence 356899999999732 2 3578999999999999764321 124689999999999999999999754110
Q ss_pred cCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCCC-----HHHHHHHHHHcCCeEEeeccccc
Q 022028 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSEMAKAVELLGLRACLVQSTMD 172 (304)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~-----~~~~~~~~~~~gir~~~~~~~~d 172 (304)
...+++. .....++..||||++++.... .+.+....+...-+.++...+.
T Consensus 69 --------------------~~~e~~~----~~~~aa~~gGvTtv~~~~~t~p~~~~~~~~~~~~~~a~~~s~v~~~~~- 123 (443)
T PRK02382 69 --------------------THKETWY----TGSRSAAAGGVTTVVDQPNTDPPTVDGESFDEKAELAARKSIVDFGIN- 123 (443)
T ss_pred --------------------CchhhHH----HHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCceEEEEEE-
Confidence 0112222 223457889999999875321 1222222222222222211111
Q ss_pred CCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCe-EEEEee-CcccCCCHHHHHHHHHHHHHhCCeeeEEecCCh
Q 022028 173 CGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRI-RIWFGI-RQIMNATDRLLLETRDMAREFKTGIHMHVAEIP 247 (304)
Q Consensus 173 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~-~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~ 247 (304)
+. .. ..+++...+.+. +.-.+ +++... .+....+++.+.++++.+++.++++.+|+ |..
T Consensus 124 -~~--~~--------~~~~~l~~l~~~----gv~~~gkv~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~ 184 (443)
T PRK02382 124 -GG--VT--------GNWDPLESLWER----GVFALGEIFMADSTGGMGIDEELFEEALAEAARLGVLATVHA-EDE 184 (443)
T ss_pred -ee--ec--------cchhhHHHHHhc----CccceeEEEEEecCCCcccCHHHHHHHHHHHHhcCCeEEEec-CCH
Confidence 10 00 001122223221 11112 333322 12235577889999999999999999996 443
No 79
>PRK07369 dihydroorotase; Provisional
Probab=99.58 E-value=3.2e-13 Score=123.10 Aligned_cols=96 Identities=23% Similarity=0.185 Sum_probs=68.6
Q ss_pred cccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcc
Q 022028 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (304)
Q Consensus 18 ~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~ 97 (304)
|.+++|+|++|+++.. .....++|+|+||+|++|++.... ++.+.++||++|++|+|||||+|+|+....
T Consensus 1 ~~~~~i~n~~v~d~~~--~~~~~~~v~I~dg~I~~i~~~~~~----~~~~~~~iDa~G~~vlPG~ID~H~H~~~~~---- 70 (418)
T PRK07369 1 MSNELLQQVRVLDPVS--NTDRIADVLIEDGKIQAIEPHIDP----IPPDTQIIDASGLILGPGLVDLYSHSGEPG---- 70 (418)
T ss_pred CCCEEEeCeEEECCCC--CcccceeEEEECCEEEEecCCccc----CCCCCEEEECCCCEEecCEEecccccCCCC----
Confidence 5678899999996442 223678999999999999865321 113568999999999999999999974310
Q ss_pred cCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCC
Q 022028 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG 146 (304)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~ 146 (304)
....+++... ...++..|+||+.++.
T Consensus 71 -------------------~~~~e~~~s~----~~aa~~GGvTtv~~~p 96 (418)
T PRK07369 71 -------------------FEERETLASL----AAAAAAGGFTRVAILP 96 (418)
T ss_pred -------------------cCCCccHHHH----HHHHHhCCceEEEECC
Confidence 0012233322 3457889999999875
No 80
>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []. The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....
Probab=99.58 E-value=9.7e-16 Score=136.09 Aligned_cols=198 Identities=20% Similarity=0.252 Sum_probs=127.1
Q ss_pred EeeccccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCC--CCHH---
Q 022028 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG--QHVS--- 151 (304)
Q Consensus 77 iv~PG~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~--~~~~--- 151 (304)
+|+|||||+|+|+..+..++. +++++.+...+.+..+++++||||++++.. ....
T Consensus 1 ~v~PGlID~H~H~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~ 60 (333)
T PF01979_consen 1 YVMPGLIDAHVHGGQGGLRGL--------------------LDPEDHYESIRTGAKAALKGGVTTVLDTPHTSPNPDIEL 60 (333)
T ss_dssp EEEE-EEEEEEEGGGTTHTTS--------------------SSHHHHHHHHHHHHHHHHHTTEEEEEEEEESSHCHHHHH
T ss_pred CEEcChhHHhhCcCCcCcccc--------------------CCHHHHHHHHHHHHHHHHhcCeEEEEcCcccCCcccccc
Confidence 699999999999998766542 457788888899999999999999999831 2221
Q ss_pred --HHHHHH---HHcCCe-EEee-ccccc--CCCCCCCCcccCChHHH---HHHHHHHHHHHcCCCC--CCeEEEEeeCcc
Q 022028 152 --EMAKAV---ELLGLR-ACLV-QSTMD--CGEGLPASWAVRTTDDC---IQSQKELYAKHHHAAD--GRIRIWFGIRQI 217 (304)
Q Consensus 152 --~~~~~~---~~~gir-~~~~-~~~~d--~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~i~~~~~~~~~ 217 (304)
...+.. ...... ..+. ..... .+...+.... ..... ..+..+.+..+..... ..+...+.+..+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (333)
T PF01979_consen 61 RNEIMEGLAAAPKIEPAMTLLGTGSVGGHGEGPNEPPDKN--GPHDEAFEGEDFIKFIEEAGSEIKRIDGVIPAISPHNP 138 (333)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEECECSEEEECHHHHHHHH--SEHHHHHHHHHHHHHHHHHTTTCEEEECEEEEEEHHTT
T ss_pred ccccccccccchhhhccccccccccccccccccccccccc--cCCchhhhHHHHHHHhhhhhhhhccccccccccccccc
Confidence 111111 111111 1110 00000 0000000000 00000 0112333333322211 144566777888
Q ss_pred cCCCHHHHHHHHHHHHH-----h-CCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCC-----CCCeeEEEeccCC
Q 022028 218 MNATDRLLLETRDMARE-----F-KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFL-----QNNLLSAHTVWVN 286 (304)
Q Consensus 218 ~~~~~e~l~~~~~~a~~-----~-~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l-----~~~~~~~H~~~l~ 286 (304)
..++.+.++...+++++ . ++++++|+.|.....+.+.+.++. ++++++...+++ ++..++.||++++
T Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 216 (333)
T PF01979_consen 139 YTVSDEELREAVELAKEFLAAEKLGIPVHIHVAEGTGEVEAMTHLYGM--SPIEALDHLGLLEEAIDDGVDLIAHGTHLS 216 (333)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTHEEEEEESSSHHHHCCCHHHHSH--HHHHHHHHHHSCHHHHHHHCEEEEEHTTSE
T ss_pred ccchhhhhhhHHhhhhhHHHHHhhcccceeeeccCcccceeEeeeeec--cchhhhccchhhhhhcccccceeeccccCC
Confidence 89999999999999999 4 999999999999887777777765 489999988998 7789999999999
Q ss_pred cchhc-----------ccccccc
Q 022028 287 HTEVN-----------CTFGNFK 298 (304)
Q Consensus 287 ~~di~-----------~p~sN~~ 298 (304)
++++. ||.+|..
T Consensus 217 ~~~~~~l~~~~~~~~~~~~~~~~ 239 (333)
T PF01979_consen 217 DEEIELLKETGIGIIHCPISNDS 239 (333)
T ss_dssp HHHHHHHHHHTHEEEEEHHHHHH
T ss_pred HHHhhhhhccCCccccccchhhh
Confidence 88774 7877776
No 81
>PRK06189 allantoinase; Provisional
Probab=99.57 E-value=3e-13 Score=124.98 Aligned_cols=93 Identities=20% Similarity=0.279 Sum_probs=67.2
Q ss_pred CcccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhc
Q 022028 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (304)
Q Consensus 17 ~~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g 96 (304)
|+.+++|+|++|++.+ .. ..++|+|+||+|.+|++..+ ..+.++||++|++|+|||||+|+|+....
T Consensus 1 ~~~~~~i~~~~v~~~~---~~-~~~~v~i~~G~I~~i~~~~~------~~~~~~iD~~g~~vlPG~ID~H~H~~~~~--- 67 (451)
T PRK06189 1 MMYDLIIRGGKVVTPE---GV-YRADIGIKNGKIAEIAPEIS------SPAREIIDADGLYVFPGMIDVHVHFNEPG--- 67 (451)
T ss_pred CCccEEEECCEEEcCC---Cc-EEEEEEEECCEEEEecCCCC------CCCCeEEECCCCEEecCEEEeeeccCCCC---
Confidence 3456899999999854 22 46899999999999986532 12467999999999999999999975410
Q ss_pred ccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCC
Q 022028 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG 146 (304)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~ 146 (304)
. -..+++.. ....++..|+||++++.
T Consensus 68 ----~----------------~~~~~~~~----~~~aa~~gGvTt~~~~p 93 (451)
T PRK06189 68 ----R----------------THWEGFAT----GSAALAAGGCTTYFDMP 93 (451)
T ss_pred ----C----------------CCcccHHH----HHHHHHhCCEEEEEECC
Confidence 0 00122222 23457889999999874
No 82
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=99.57 E-value=5.1e-15 Score=99.79 Aligned_cols=44 Identities=27% Similarity=0.663 Sum_probs=34.3
Q ss_pred EEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccch
Q 022028 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTS 90 (304)
Q Consensus 43 I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~ 90 (304)
|+|+||||++|++..+. +..+.++||++|++|+|||||+|+|+.
T Consensus 1 V~I~~g~I~~v~~~~~~----~~~~~~viD~~g~~v~PG~ID~H~H~~ 44 (68)
T PF13594_consen 1 VLIEDGKIVAVGPDSEL----PADAAEVIDAKGKYVMPGFIDMHTHLG 44 (68)
T ss_dssp EEEETTEEEEEESSCCT----TSTCCEEEEETTCEEEE-EEEEEE-TT
T ss_pred CEEECCEEEEeCCCCCC----CCCCCEEEECCCCEEeCCeEeeeeccc
Confidence 78999999999654432 123568999999999999999999986
No 83
>PRK09059 dihydroorotase; Validated
Probab=99.57 E-value=7.2e-13 Score=121.32 Aligned_cols=100 Identities=20% Similarity=0.223 Sum_probs=70.0
Q ss_pred CcccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhc
Q 022028 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (304)
Q Consensus 17 ~~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g 96 (304)
|+..++|+|++|++.+. ....+++|+|+||||++|++..... ..+ .+.++||++|++|+|||||+|+|+....
T Consensus 1 ~~~~~~i~n~~v~~~~~--~~~~~~~v~I~~G~I~~i~~~~~~~-~~~-~~~~viDa~G~~v~PG~ID~HvH~~~~~--- 73 (429)
T PRK09059 1 MMRPILLANARIIDPSR--GLDEIGTVLIEDGVIVAAGKGAGNQ-GAP-EGAEIVDCAGKAVAPGLVDARVFVGEPG--- 73 (429)
T ss_pred CCcCEEEEeeEEECCCC--CcccceEEEEECCEEEEecCccccc-cCC-CCCeEEECCCCEEeccEEecccccCCCC---
Confidence 46778999999998653 3345789999999999998653210 011 2458999999999999999999984310
Q ss_pred ccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCC
Q 022028 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG 147 (304)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~ 147 (304)
. ...+++ ......++..||||+.++..
T Consensus 74 -------~-------------~~~e~~----~~~s~aa~~gGvTtv~~~p~ 100 (429)
T PRK09059 74 -------A-------------EHRETI----ASASRAAAAGGVTSIIMMPD 100 (429)
T ss_pred -------c-------------hhhhhH----HHHHHHHHhCCcEEEEeccC
Confidence 0 001122 22334578899999998753
No 84
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=99.56 E-value=2.9e-13 Score=126.80 Aligned_cols=174 Identities=18% Similarity=0.267 Sum_probs=104.9
Q ss_pred cEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccC
Q 022028 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (304)
Q Consensus 20 ~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~ 99 (304)
+++|+|++|++.... . ...++|.|+||||++|++.. +.++||++|++|+|||||+|+|+..+.
T Consensus 1 dlli~n~~ivd~~~~-~-~~~~dI~I~~g~I~~ig~~~---------~~~viDa~G~~v~PG~ID~H~Hi~~~~------ 63 (552)
T TIGR01178 1 DIVIKNAKIIDVYNG-E-IIPGDIAIANGHIAGVGKYN---------GVKVIDALGEYAVPGFIDAHIHIESSM------ 63 (552)
T ss_pred CEEEEeeEEEeCCCC-c-EEeeeEEEECCEEEEecCCC---------CCeEEECCCCEEEeCeEecccccCCCC------
Confidence 368999999975432 3 34679999999999997631 357999999999999999999996521
Q ss_pred CCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC--------CHHHHHHHHHHcCCeEEeecccc
Q 022028 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------HVSEMAKAVELLGLRACLVQSTM 171 (304)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~--------~~~~~~~~~~~~gir~~~~~~~~ 171 (304)
++++++. ..++..||||+++.... ..+.+.+.++...++.+...+.
T Consensus 64 ------------------~~~~~~~-------~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~~~~~d~~~~~~s- 117 (552)
T TIGR01178 64 ------------------LTPSEFA-------KLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAKKTPLNFYFMLPS- 117 (552)
T ss_pred ------------------CChhHHH-------HHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhhcCCcEEEEECCC-
Confidence 1222221 23689999999974321 1233455555556665443321
Q ss_pred cCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCC--eEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecC
Q 022028 172 DCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGR--IRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAE 245 (304)
Q Consensus 172 d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E 245 (304)
..++.+.++.+.. -..++..++++. ++. ++..+...+.....++.++.+ +.+++.+..+..|+..
T Consensus 118 -~vp~~~~e~~g~~--~~~~~i~~~~~~-----~~V~glke~m~~~~v~~~d~~~l~~i-~~a~~~g~~I~gHap~ 184 (552)
T TIGR01178 118 -CVPALQFETSGAV--LTAEDIDELMEL-----DEVLGLAEVMDYPGVINADIEMLNKI-NSARKRNKVIDGHCPG 184 (552)
T ss_pred -CCCCCcccCCCCc--cCHHHHHHHHcC-----CCccEEEEEecchhhcCCCHHHHHHH-HHHHhCCCEEEecCCC
Confidence 1222221221110 012233333332 132 344443323334567777755 7889999999999743
No 85
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=99.55 E-value=7.6e-13 Score=120.00 Aligned_cols=174 Identities=18% Similarity=0.203 Sum_probs=105.0
Q ss_pred cEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccC
Q 022028 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (304)
Q Consensus 20 ~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~ 99 (304)
+++|+|+++++++ ....++|.|+||+|++|++.... . .+.++||++|++|+|||||.|+|+....
T Consensus 2 ~~lIk~~~iv~~~----~~~~~di~i~~g~I~~Ig~~l~~----~-~~~~iiD~~g~~v~PG~ID~HVH~repg------ 66 (430)
T COG0044 2 DLLIKNARVVDPG----EDEVADILIKDGKIAAIGKNLEP----T-SGAEIIDAKGLLVLPGLVDLHVHFREPG------ 66 (430)
T ss_pred cEEEeccEEEcCC----CceEecEEEECCEEEEeccCCCC----C-CCCcEEECCCCEEccCeeEEEEecCCCC------
Confidence 4789999999852 23678999999999999987542 1 3678999999999999999999995411
Q ss_pred CCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCCC-----HHHH---HHHHHHc-CCeEEeeccc
Q 022028 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSEM---AKAVELL-GLRACLVQST 170 (304)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~-----~~~~---~~~~~~~-gir~~~~~~~ 170 (304)
. -..|++ ..+.+.++..|+|||+++.... .+.+ .+.++.. -++......+
T Consensus 67 ----~-------------~~ke~~----~tgs~AAa~GG~Ttv~dmPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~i 125 (430)
T COG0044 67 ----F-------------EHKETF----ETGSRAAAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKGKSVVDYAFYGGL 125 (430)
T ss_pred ----c-------------chhhhH----HHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHhhccceeEEEEEEEE
Confidence 0 012332 3344567899999999975421 1221 2222211 1122111111
Q ss_pred ccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhH
Q 022028 171 MDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYEN 250 (304)
Q Consensus 171 ~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~ 250 (304)
.. ... ...++.+... ..+ ++.+..-.. .......+++..+.++..+..+.+|+ |...-.
T Consensus 126 t~-------~~~---------~~~~~~~~~~--~~g-~~~F~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~H~-Ed~~~~ 184 (430)
T COG0044 126 TK-------GNL---------GKLELTERGV--EAG-FKGFMDDST-GALDDDVLEEALEYAAELGALILVHA-EDDDLI 184 (430)
T ss_pred ec-------ccc---------chhhhhhhhh--ccc-eEEEecCCc-CcCCHHHHHHHHHHHHhcCCeEEEec-CChhHh
Confidence 10 000 0011111111 012 233333322 34678889999999999999999995 766533
No 86
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=99.53 E-value=7.9e-13 Score=119.07 Aligned_cols=186 Identities=14% Similarity=0.202 Sum_probs=100.7
Q ss_pred cEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCC-CEeeccccccCccchhhhhhccc
Q 022028 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQS-QILLPGFVNTHVHTSQQLAKGIA 98 (304)
Q Consensus 20 ~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g-~iv~PG~ID~H~Hl~~s~~~g~~ 98 (304)
+++|+|++|++.. ..+|.|+||||++|++..+. .+.++||++| ++|+|||||+|+|+....
T Consensus 2 ~~~i~n~~i~~~~-------~~~v~i~~g~I~~v~~~~~~------~~~~~iD~~g~~~l~PG~ID~H~H~~~~~----- 63 (365)
T TIGR03583 2 DLLIKNGRTVNGT-------PVDIAIEDGKIAAVGTTITG------SAKQTIDLEGETYVSAGWIDDHTHCFPKS----- 63 (365)
T ss_pred cEEEECcEEecCC-------eeEEEEECCEEEEecCCCCC------CCCeEEECCCCeEEecCEEEeeeccCCCc-----
Confidence 4789999999631 24899999999999764321 1458999999 999999999999985311
Q ss_pred CCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCC---CCHHHHHHHHHHcCCeEEeecccccCCC
Q 022028 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---QHVSEMAKAVELLGLRACLVQSTMDCGE 175 (304)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~---~~~~~~~~~~~~~gir~~~~~~~~d~g~ 175 (304)
.. + .++.. ...+..|||++.++.. ...+.+.+.++..+.+.+....+. ..
T Consensus 64 ---~~--~-------------~~~~~-------~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 116 (365)
T TIGR03583 64 ---AL--Y-------------YDEPD-------EIGVKTGVTTVVDAGSTGADDIDDFYRLAQQAKTNVFALLNIS--RI 116 (365)
T ss_pred ---cc--c-------------cCCHh-------HhhhcCceeEEEeCCCCCCCCHHHHHHHHHhhCCcEEEEeeeh--hc
Confidence 00 0 00100 1136789999998542 334555555555554432211111 11
Q ss_pred CC-CCCcccCChHHHHHHHHHHHHHHcCCCCCCe---EEEEeeCcc--cCCCHHHHHHHHHHHHHhCCeeeEEecCChhh
Q 022028 176 GL-PASWAVRTTDDCIQSQKELYAKHHHAADGRI---RIWFGIRQI--MNATDRLLLETRDMAREFKTGIHMHVAEIPYE 249 (304)
Q Consensus 176 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~~~~~~--~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~ 249 (304)
|. ++...........++.+++++.+ .+.+ +..+++... ...++..+......+ +.++++.+|+.+...+
T Consensus 117 G~~~~~~~~~~~~~~~~~l~~~~~~~----~~~vv~~~~~~t~~~i~E~gl~~~~~~~~l~~~-~~~~pv~vH~~~a~~~ 191 (365)
T TIGR03583 117 GLVAQDELADLSNLDASAVKQAVERY----PDFIVGLKARMSKSVVGDNGIEPLEIAKQIQQE-NLELPLMVHIGSAPPE 191 (365)
T ss_pred cccChhhhhChHHhHHHHHHHHHHhC----cCcEEEEEEeecccccccCCcCHHHHHHHHHHh-cCCCcEEEEeCCCccC
Confidence 22 11110000111222333333332 2222 333443211 122244333333333 5789999999988766
Q ss_pred HHHHHH
Q 022028 250 NQVVMD 255 (304)
Q Consensus 250 ~~~~~~ 255 (304)
.+.+.+
T Consensus 192 ~~~i~~ 197 (365)
T TIGR03583 192 LDEILA 197 (365)
T ss_pred HHHHHH
Confidence 555444
No 87
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=99.51 E-value=6.5e-13 Score=114.09 Aligned_cols=186 Identities=21% Similarity=0.282 Sum_probs=125.9
Q ss_pred ccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC--------CHHHH
Q 022028 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------HVSEM 153 (304)
Q Consensus 82 ~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~--------~~~~~ 153 (304)
|||+|+|+..+.+++......+ .| ....++++.+......+.+++++||||+.++... ..+.+
T Consensus 1 ~ID~H~H~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~ 71 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLEL-KE--------AEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAV 71 (275)
T ss_pred CcccchhhHHHHHccCCCcccc-cc--------ccccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccccchHHHHH
Confidence 7999999998877664422211 11 3567888999999999999999999999986532 23567
Q ss_pred HHHHHHc-CCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCC---CHHHHHHHH
Q 022028 154 AKAVELL-GLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNA---TDRLLLETR 229 (304)
Q Consensus 154 ~~~~~~~-gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~e~l~~~~ 229 (304)
.+++.+. |++.+......+.. ... .+.......+.++.+.. ....++.++..... +++.++.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~i~~~~~----~~~~gi~~~~~~~~~~~~~~~~~~~~ 139 (275)
T cd01292 72 AEAARASAGIRVVLGLGIPGVP----AAV----DEDAEALLLELLRRGLE----LGAVGLKLAGPYTATGLSDESLRRVL 139 (275)
T ss_pred HHHHHHhcCeeeEEeccCCCCc----ccc----chhHHHHHHHHHHHHHh----cCCeeEeeCCCCCCCCCCcHHHHHHH
Confidence 7888888 88887665544321 000 12223334444544432 12234555555444 788999999
Q ss_pred HHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc-----------ccccccc
Q 022028 230 DMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-----------CTFGNFK 298 (304)
Q Consensus 230 ~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-----------~p~sN~~ 298 (304)
++|+++++++.+|+.+...+ . ++++.+.+.+.++.++++.||.++++++++ ||.+|.+
T Consensus 140 ~~a~~~~~~i~~H~~~~~~~---------~--~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 208 (275)
T cd01292 140 EEARKLGLPVVIHAGELPDP---------T--RALEDLVALLRLGGRVVIGHVSHLDPELLELLKEAGVSLEVCPLSNYL 208 (275)
T ss_pred HHHHHcCCeEEEeeCCcccC---------c--cCHHHHHHHHhcCCCEEEECCccCCHHHHHHHHHcCCeEEECCccccc
Confidence 99999999999999887653 0 134444444434678999999999887776 8888876
Q ss_pred c
Q 022028 299 Y 299 (304)
Q Consensus 299 l 299 (304)
+
T Consensus 209 ~ 209 (275)
T cd01292 209 L 209 (275)
T ss_pred c
Confidence 5
No 88
>PRK09358 adenosine deaminase; Provisional
Probab=99.50 E-value=4.7e-13 Score=119.32 Aligned_cols=178 Identities=17% Similarity=0.121 Sum_probs=116.7
Q ss_pred hcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCccee---ecCCC-----CC--------HHHHHHHHH
Q 022028 95 KGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCF---AEAGG-----QH--------VSEMAKAVE 158 (304)
Q Consensus 95 ~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv---~d~~~-----~~--------~~~~~~~~~ 158 (304)
|+..+..++.+|+....++.....++++++..++.++.++++.|||++ .+... .. .+.+.++..
T Consensus 51 r~~~~~~~l~~~l~~~~~~~~~~~t~ed~~~~~~~~~~e~~~~Gvty~E~~~~p~~~~~~gl~~~~~~~a~~~~~~~a~~ 130 (340)
T PRK09358 51 RAAYDFRDLQSFLDKYDAGVAVLQTEEDLRRLAFEYLEDAAADGVVYAEIRFDPQLHTERGLPLEEVVEAVLDGLRAAEA 130 (340)
T ss_pred cccccCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCEEEEEEeChhhhhhcCCCHHHHHHHHHHHHHHHHH
Confidence 444455678889988777777778999999999999999999999975 33221 00 223455566
Q ss_pred HcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcc-cCCCHHHHHHHHHHHHHhCC
Q 022028 159 LLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQI-MNATDRLLLETRDMAREFKT 237 (304)
Q Consensus 159 ~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~e~l~~~~~~a~~~~~ 237 (304)
+.|+|..+...++... ..+...+..+++++.+.. ++.+ ++.+.+. ...+++.++.++++|+++|+
T Consensus 131 ~~gi~~~li~~~~r~~----------~~~~~~~~~~~~~~~~~~--~~vv--g~~l~g~e~~~~~~~~~~~~~~A~~~g~ 196 (340)
T PRK09358 131 EFGISVRLILCFMRHF----------GEEAAARELEALAARYRD--DGVV--GFDLAGDELGFPPSKFARAFDRARDAGL 196 (340)
T ss_pred hcCceEEEEEEecCCC----------CHHHHHHHHHHHHHHhcC--CcEE--EEeCCCcCCCCCHHHHHHHHHHHHHCCC
Confidence 7799987765544311 122333334445544332 2333 4444333 34678899999999999999
Q ss_pred eeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcch--hc-----------cccccccccc
Q 022028 238 GIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE--VN-----------CTFGNFKYAV 301 (304)
Q Consensus 238 ~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~d--i~-----------~p~sN~~l~~ 301 (304)
++++|++|+....+. .+.+..+|. + -+.||+++++++ ++ ||.||.+++.
T Consensus 197 ~~~~H~~E~~~~~~~-----------~~al~~lg~---~-ri~Hg~~l~~~~~~~~~l~~~gi~v~~cP~Sn~~l~~ 258 (340)
T PRK09358 197 RLTAHAGEAGGPESI-----------WEALDELGA---E-RIGHGVRAIEDPALMARLADRRIPLEVCPTSNVQTGA 258 (340)
T ss_pred CeEEcCCCCCchhHH-----------HHHHHHcCC---c-ccchhhhhccCHHHHHHHHHcCCeEEECCCccccccc
Confidence 999999997643221 122222333 3 379999997554 44 9999999875
No 89
>PRK09060 dihydroorotase; Validated
Probab=99.49 E-value=5.4e-12 Score=116.30 Aligned_cols=93 Identities=25% Similarity=0.321 Sum_probs=67.0
Q ss_pred CcccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhc
Q 022028 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (304)
Q Consensus 17 ~~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g 96 (304)
|..+++|+|++|++.+. . ..++|.|+||+|.+|++..+ ..+.++||++|++|+|||||+|+|+....
T Consensus 3 ~~~d~~i~~~~v~~~~~---~-~~~~i~i~~g~I~~i~~~~~------~~~~~~iD~~G~~v~PG~ID~HvH~~~~~--- 69 (444)
T PRK09060 3 QTFDLILKGGTVVNPDG---E-GRADIGIRDGRIAAIGDLSG------ASAGEVIDCRGLHVLPGVIDSQVHFREPG--- 69 (444)
T ss_pred CcCcEEEECCEEECCCC---C-eeeEEEEECCEEEEecCCCC------CCCceEEECCCCEEccCEEeccccccCCC---
Confidence 34568899999998542 2 35899999999999986432 12458999999999999999999974310
Q ss_pred ccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCC
Q 022028 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG 146 (304)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~ 146 (304)
....+++.. ....++..||||++++.
T Consensus 70 --------------------~~~~e~~~t----~~~aa~~gGvTtv~~~p 95 (444)
T PRK09060 70 --------------------LEHKEDLET----GSRAAVLGGVTAVFEMP 95 (444)
T ss_pred --------------------CCccchHHH----HHHHHHhCCcEEEEECC
Confidence 001233333 23356899999999875
No 90
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=99.48 E-value=8.6e-13 Score=120.11 Aligned_cols=181 Identities=17% Similarity=0.272 Sum_probs=111.5
Q ss_pred cccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEe-cCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhc
Q 022028 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAI-GQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (304)
Q Consensus 18 ~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i-~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g 96 (304)
..+++++|+++++.-. +-+-.++|.|.+|||+.| ++.. .++.++||+.|++|.|||||+|.|+..|
T Consensus 23 ~adlv~~ng~ivdv~~--gei~~~dIaI~~grI~~v~~~~~-------~e~~~~iDa~g~yivPGfID~H~HIESS---- 89 (584)
T COG1001 23 KADLVLKNGRIVDVVT--GEIYKGDIAIAGGRIVGVIGEYR-------AEATEVIDAAGRYIVPGFIDAHLHIESS---- 89 (584)
T ss_pred CCCEEEECCEEEEeee--ccEEeeeEEEECCEEEEeecCcC-------cccceeecCCCCEeccceeecceecccc----
Confidence 4678999999998653 334577999999999995 4432 1367999999999999999999999663
Q ss_pred ccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceee-cCCC-------CCHHHHHHHHHHcCCeEEeec
Q 022028 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFA-EAGG-------QHVSEMAKAVELLGLRACLVQ 168 (304)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~-d~~~-------~~~~~~~~~~~~~gir~~~~~ 168 (304)
.++|.++. +..+..||||+. |... ....-+++.++...++.++..
T Consensus 90 --------------------m~tP~~FA-------~~Vlp~GtTtvV~DPHEIaNV~G~~Gi~~ml~~a~~~pl~~~~~~ 142 (584)
T COG1001 90 --------------------MLTPSEFA-------RAVLPHGTTTVVSDPHEIANVLGEDGIRFMLDEAKETPLKVYVML 142 (584)
T ss_pred --------------------ccCHHHHH-------HHhhccCceEEeeCcHHHHhhccHHHHHHHHHHHhhCCeEEEEec
Confidence 34554433 336789999986 3221 124457788888888887654
Q ss_pred ccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCC
Q 022028 169 STMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEI 246 (304)
Q Consensus 169 ~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~ 246 (304)
+.. -|..+-+..+ ..-..++.+++++ |... -.+.-.+...+...-.++.+. ..+.+++.|+++.-|+.--
T Consensus 143 pSc--VPat~~Et~G--a~l~a~~i~e~~~-~p~V--igl~E~Mn~pgVi~~D~~~l~-kl~a~~~~~k~VdGHapgl 212 (584)
T COG1001 143 PSC--VPATPFETSG--AELTAEDIKELLE-HPEV--IGLGEMMNFPGVIEGDPDMLA-KLEAARKAGKPVDGHAPGL 212 (584)
T ss_pred ccC--ccCCccccCC--ceecHHHHHHHhh-CCCc--cchhhhcCCchhccCCHHHHH-HHHHHHHcCCeecccCCCC
Confidence 321 1111111111 1111122233332 2111 001112222334455666665 7788999999999997543
No 91
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=99.46 E-value=1.2e-12 Score=115.94 Aligned_cols=177 Identities=18% Similarity=0.120 Sum_probs=113.6
Q ss_pred hcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCC--C----C-------C----HHHHHHHH
Q 022028 95 KGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG--G----Q-------H----VSEMAKAV 157 (304)
Q Consensus 95 ~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~--~----~-------~----~~~~~~~~ 157 (304)
++..++.++.+|+....++....+++++++..++.++.+++++|||++ ++. + . . .+.+.++.
T Consensus 43 ~~~~~~~~l~~~l~~~~~~~~~~~~~ed~~~~~~~~~~e~~~~Gvt~~-E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~ 121 (325)
T cd01320 43 VAAYNFSDLQDFLAKYDFGLSVLQTEEDFERLAYEYLEDAAADGVVYA-EIRFSPQLHTRRGLSFDEVVEAVLRGLDEAE 121 (325)
T ss_pred hccccCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCEEE-EEEeCchhhccCCCCHHHHHHHHHHHHHHHH
Confidence 344456677888887777777778999999999999999999999965 321 1 0 0 12344555
Q ss_pred HHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCC
Q 022028 158 ELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKT 237 (304)
Q Consensus 158 ~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~ 237 (304)
++.|+|+.+........ ..+..++..+++.++.. +..+.+.++... ...+.+.++.+++.|+++|+
T Consensus 122 ~~~gi~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~--~~vvg~~l~~~~-~~~~~~~~~~~~~~A~~~g~ 187 (325)
T cd01320 122 AEFGIKARLILCGLRHL-----------SPESAQETLELALKYRD--KGVVGFDLAGDE-VGFPPEKFVRAFQRAREAGL 187 (325)
T ss_pred HhcCCeEEEEEEecCCC-----------CHHHHHHHHHHHHhccC--CCEEEeecCCCC-CCCCHHHHHHHHHHHHHCCC
Confidence 66799987654432110 11233444455545533 223444343222 23478889999999999999
Q ss_pred eeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcc--hhc-----------cccccccccc
Q 022028 238 GIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHT--EVN-----------CTFGNFKYAV 301 (304)
Q Consensus 238 ~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~--di~-----------~p~sN~~l~~ 301 (304)
++.+|++|+....+. .+.++..|. + .+.||++++++ +++ ||.||.+++.
T Consensus 188 ~v~~H~~E~~~~~~~-----------~~a~~~~g~---~-~i~H~~~l~~~~~~~~~l~~~gi~v~~~P~sn~~l~~ 249 (325)
T cd01320 188 RLTAHAGEAGGPESV-----------RDALDLLGA---E-RIGHGIRAIEDPELVKRLAERNIPLEVCPTSNVQTGA 249 (325)
T ss_pred ceEEeCCCCCCHHHH-----------HHHHHHcCC---c-ccchhhccCccHHHHHHHHHcCCeEEECCCccccccc
Confidence 999999998533221 122222343 2 48999999654 454 9999999875
No 92
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=99.45 E-value=1.5e-12 Score=119.91 Aligned_cols=114 Identities=17% Similarity=0.160 Sum_probs=74.9
Q ss_pred EEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhh---hcc
Q 022028 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLA---KGI 97 (304)
Q Consensus 21 ~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~---~g~ 97 (304)
++|+|++|++.... .....++|+|+||+|++|++..+ .+.++||++|++|+|||||+|+|+..... |+.
T Consensus 2 ~iIkng~I~dp~~~-~~~~~~dI~IedGkIveIg~~~~-------~~~eVIDa~G~vVmPGfID~HvHg~gG~~~~~R~~ 73 (556)
T TIGR03121 2 ILIKNGTVYDPANG-IDGEVMDIFIRDGKIVEPVSGGT-------KPAKVIDASGKLVMAGGVDSHTHIAGPKVNVGRLL 73 (556)
T ss_pred EEEEeEEEEcCCCC-ccccccEEEEECCEEEEecCCCC-------CCCeEEECCCCEEEeCEEeeeECCCcccccccccc
Confidence 57899999985421 11235899999999999976432 13479999999999999999999976321 111
Q ss_pred cCCCCccccccccccCccCCCChH--HHHHHHHHHHHHHHhcCcceeecCCC
Q 022028 98 ADDVDLMTWLHDRIWPYESNMTEE--DSYISTLLCGIELIHSGVTCFAEAGG 147 (304)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~~e--~~~~~~~~~~~~~l~~GvTtv~d~~~ 147 (304)
....|..... +.....+.. .++..+.....++++.|+||++|...
T Consensus 74 ----~pE~~~~~~~-~~~~~~r~Gtt~~lPTt~tt~y~ya~mGyTt~~eaa~ 120 (556)
T TIGR03121 74 ----RPEDHRRDPE-PRTGLTRAGSGFSVPSTYATGYRYARMGYTTVFEAAV 120 (556)
T ss_pred ----CHHHHhhcch-hhhhhcCCCcceEehhHhHHHHHHHhCCccEEecCCC
Confidence 1112221000 111112222 34566677789999999999999764
No 93
>PRK08044 allantoinase; Provisional
Probab=99.44 E-value=2.1e-11 Score=112.49 Aligned_cols=91 Identities=24% Similarity=0.319 Sum_probs=66.7
Q ss_pred cccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcc
Q 022028 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (304)
Q Consensus 18 ~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~ 97 (304)
+.+++|+|++|++.+ .. ..++|+|+||+|.+|++..+ .+.++||++|.+++|||||+|+|+.....
T Consensus 2 ~~~~~i~n~~vi~~~---~~-~~~~i~I~dg~I~~i~~~~~-------~~~~~iD~~G~~v~Pg~iD~h~h~~~~~~--- 67 (449)
T PRK08044 2 SFDLIIKNGTVILEN---EA-RVVDIAVKGGKIAAIGQDLG-------DAKEVMDASGLVVSPGMVDAHTHISEPGR--- 67 (449)
T ss_pred CceEEEECcEEEcCC---CC-EEEEEEEECCEEEEecCCCC-------CCCeEEECCCCEEcCCeeccccccCCCCc---
Confidence 346889999999843 22 34799999999999986431 24589999999999999999999854110
Q ss_pred cCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCC
Q 022028 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG 146 (304)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~ 146 (304)
.. .+++ ......++..|+||++|+.
T Consensus 68 -------------------~~-~e~~----~~~~~aa~~gGvTtv~d~~ 92 (449)
T PRK08044 68 -------------------SH-WEGY----ETGTRAAAKGGITTMIEMP 92 (449)
T ss_pred -------------------cc-cccH----HHHHHHHHhCCceEEECCc
Confidence 00 1222 2334567899999999986
No 94
>PRK10027 cryptic adenine deaminase; Provisional
Probab=99.43 E-value=6.2e-12 Score=118.15 Aligned_cols=176 Identities=15% Similarity=0.161 Sum_probs=105.0
Q ss_pred ccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhccc
Q 022028 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (304)
Q Consensus 19 ~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~ 98 (304)
.+++|+|++|++.... .+ ..++|.|++|+|.+|++..+. ..+.++||++|++|+|||||+|+|+..+.
T Consensus 30 ~dllI~ng~vv~~~~~-~~-~~~~V~I~~GrI~~Vg~~~~~-----~~~~~vIDa~G~~v~PGlIDaHvHiess~----- 97 (588)
T PRK10027 30 ADYIIDNVSILDLING-GE-ISGPIVIKGRYIAGVGAEYAD-----APALQRIDARGATAVPGFIDAHLHIESSM----- 97 (588)
T ss_pred CCEEEECcEEEeCCCC-cE-EeeEEEEECCEEEEeCCCCCC-----CCCCeEEECCCCEEEECeEeccccCCccc-----
Confidence 4578999999985422 33 457899999999999764321 12458999999999999999999996531
Q ss_pred CCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC--------CHHHHHHHHHHcCCeEEeeccc
Q 022028 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------HVSEMAKAVELLGLRACLVQST 170 (304)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~--------~~~~~~~~~~~~gir~~~~~~~ 170 (304)
++++++. ..++..|+||+++.... ..+.+.+.+...+++.+...
T Consensus 98 -------------------~~p~~~a-------~aal~~G~TtVv~dPhei~nv~g~~gi~~~l~~a~~~p~~~~~~~-- 149 (588)
T PRK10027 98 -------------------MTPVTFE-------TATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQV-- 149 (588)
T ss_pred -------------------CCHhHHH-------HHHHhCceEEEEcCCCCcccCCCHHHHHHHHHHhhhCCCeeEEee--
Confidence 2233332 13689999999873221 13345556666676654332
Q ss_pred ccCCCCCC-CCcccCChHHHHHHHHHHHHHHcCCCCCCeE--EEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEec
Q 022028 171 MDCGEGLP-ASWAVRTTDDCIQSQKELYAKHHHAADGRIR--IWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVA 244 (304)
Q Consensus 171 ~d~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~ 244 (304)
...+|..+ -+..++ .-..++..++++. +..+. -.+...+.....++.++.+... +++.+.-|..
T Consensus 150 ps~vpa~~~~Et~Ga--~~~~~~~~~~l~~-----~~v~glgEvMn~~~V~~~d~~~~~ki~~~---~~~~idGH~p 216 (588)
T PRK10027 150 SSCVPALEGCDVNGA--SFTLEQMLAWRDH-----PQVTGLAEMMDYPGVISGQNALLDKLDAF---RHLTLDGHCP 216 (588)
T ss_pred cccCcCCcccccCCC--cCCHHHHHHHhcC-----CCceeEEeccCccccccCCHHHHHHHHHh---CCCceECCCC
Confidence 22333222 111111 0111223333321 12221 1122234456688888877733 7889999975
No 95
>PRK08417 dihydroorotase; Provisional
Probab=99.42 E-value=1e-11 Score=112.48 Aligned_cols=148 Identities=14% Similarity=0.167 Sum_probs=84.2
Q ss_pred EEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCCCCccccccccccCccCCCChHH
Q 022028 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEED 122 (304)
Q Consensus 43 I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~ 122 (304)
|+|+||||++|++.. .+.++||++|++|+|||||+|+|+... ..+.++
T Consensus 1 i~I~dG~I~~i~~~~--------~~~~viDa~g~~vlPG~ID~HvH~~~~------------------------~~~~e~ 48 (386)
T PRK08417 1 IRIKDGKITEIGSDL--------KGEEILDAKGKTLLPALVDLNVSLKND------------------------SLSSKN 48 (386)
T ss_pred CEEECCEEEEecCCC--------CCCeEEECCCCEEccCeeEEeeeeCCC------------------------CcChhh
Confidence 579999999997653 145899999999999999999998431 011233
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCCH----HHHHHHHHH-cCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHH
Q 022028 123 SYISTLLCGIELIHSGVTCFAEAGGQHV----SEMAKAVEL-LGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELY 197 (304)
Q Consensus 123 ~~~~~~~~~~~~l~~GvTtv~d~~~~~~----~~~~~~~~~-~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~ 197 (304)
+. .+...++.+||||++++..... ...++...+ .+-.. ..+.+... .. . ..+.+++..++.
T Consensus 49 ~~----t~s~aA~aGGvTtv~dmpnt~P~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~-~-----~~~~~~~i~~l~ 114 (386)
T PRK08417 49 LK----SLENECLKGGVGSIVLYPDSTPAIDNEIALELINSAQRELP---MQIFPSIR-AL-D-----EDGKLSNIATLL 114 (386)
T ss_pred HH----HHHHHHHcCCcEEEEeCCCCCCCCCCHHHHHHHHHHhhccC---CcEEEEEE-EE-C-----CCccHHHHHHHH
Confidence 33 3345578999999999863211 112222111 11100 00111100 00 0 011122333332
Q ss_pred HHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCCh
Q 022028 198 AKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP 247 (304)
Q Consensus 198 ~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~ 247 (304)
.. |...+... ...++..+.++++.++++|+++.+|+ |..
T Consensus 115 ----~~--Gv~~~k~~----~~~~~~~l~~~~~~a~~~g~~V~~Ha-Ed~ 153 (386)
T PRK08417 115 ----KK--GAKALELS----SDLDANLLKVIAQYAKMLDVPIFCRC-EDS 153 (386)
T ss_pred ----HC--CCEEEECC----CCCCHHHHHHHHHHHHHcCCEEEEeC-CCH
Confidence 21 22211111 14678889999999999999999996 553
No 96
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=99.41 E-value=6.7e-12 Score=115.13 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=48.8
Q ss_pred EEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhh
Q 022028 23 LHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQ 92 (304)
Q Consensus 23 i~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s 92 (304)
|+|++|++.... ....+++|+|+||||++|++.. + +.++||++|++|+|||||+|+|+...
T Consensus 1 Ikng~V~d~~~~-~~~~~~dI~IedGkIv~Vg~~~------~--~~~vID~~G~~VmPGfID~HtH~~gg 61 (541)
T cd01304 1 IKNGTVYDPLNG-INGEKMDIFIRDGKIVESSSGA------K--PAKVIDASGKVVMAGGVDMHSHIAGG 61 (541)
T ss_pred CEEEEEEcCCCc-ccccccEEEEECCEEEEEccCC------C--CCeEEECCCCEEECCeeeeeeCcccc
Confidence 578999986532 2246789999999999998642 1 34799999999999999999999753
No 97
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=99.39 E-value=5.5e-11 Score=108.69 Aligned_cols=156 Identities=19% Similarity=0.197 Sum_probs=86.5
Q ss_pred eeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCCCCccccccccccCccCCC
Q 022028 39 RNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNM 118 (304)
Q Consensus 39 ~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~ 118 (304)
..++|+|+||||++|++... +.+.++||++|++|+|||||+|+|+... . ..
T Consensus 4 ~~~~v~I~~g~I~~i~~~~~------~~~~~~ida~g~~v~PG~ID~H~H~~~~--------~---------------~~ 54 (411)
T TIGR00857 4 TEVDILVEGGRIKKIGKLRI------PPDAEVIDAKGLLVLPGFIDLHVHLRDP--------G---------------EE 54 (411)
T ss_pred EEEEEEEECCEEEEeeccCC------CCCCeEEECCCCEEecCEEEcccCCCCC--------C---------------Cc
Confidence 46799999999999974211 1245799999999999999999999530 0 01
Q ss_pred ChHHHHHHHHHHHHHHHhcCcceeecCCCC-----CHHHHHHHHHHcC----CeEEeecccccCCCCCCCCcccCChHHH
Q 022028 119 TEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----HVSEMAKAVELLG----LRACLVQSTMDCGEGLPASWAVRTTDDC 189 (304)
Q Consensus 119 ~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~-----~~~~~~~~~~~~g----ir~~~~~~~~d~g~~~~~~~~~~~~~~~ 189 (304)
..+++.. ....++..||||++++... ..+.+....+... +.......+.. .. ....
T Consensus 55 ~~~~~~~----~~~~~~~~GvTtv~~~~~t~p~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~-------~~----~~~~ 119 (411)
T TIGR00857 55 YKEDIES----GSKAAAHGGFTTVADMPNTKPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQ-------GN----QGKE 119 (411)
T ss_pred cHhHHHH----HHHHHHhCCeEEEEEecCCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEec-------CC----cccc
Confidence 1223222 2345789999999986421 1122222212211 11111111110 00 0011
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEec
Q 022028 190 IQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVA 244 (304)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~ 244 (304)
+++..++.+ .|.+...+........++..+.++++.++++|+++.+|+-
T Consensus 120 l~e~~~l~~------~Gv~g~~f~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~E 168 (411)
T TIGR00857 120 LTEAYELKE------AGAVGRMFTDDGSEVQDILSMRRALEYAAIAGVPIALHAE 168 (411)
T ss_pred HHHHHHHHH------CCcEEEEEEeCCcccCCHHHHHHHHHHHHHcCCEEEEecC
Confidence 222223221 1222211222122235777888999999999999999963
No 98
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=99.39 E-value=4.7e-12 Score=112.16 Aligned_cols=170 Identities=17% Similarity=0.146 Sum_probs=110.2
Q ss_pred CCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCC--CC---------------CHHHHHHHHHHcCCe
Q 022028 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG--GQ---------------HVSEMAKAVELLGLR 163 (304)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~--~~---------------~~~~~~~~~~~~gir 163 (304)
.+|.+|+....|+.....++++++..++..+.++++.||| +.++. +. ..+.+.++.++.|++
T Consensus 48 ~~l~~~l~~~~~~~~~~~t~e~l~~~~~~~~~e~~~~Gv~-y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a~~~~gi~ 126 (324)
T TIGR01430 48 RDLQDFLAKYDFGVEVLRTEDDFKRLAYEYVEKAAKDGVV-YAEVFFDPQLHTNRGISPDTVVEAVLDGLDEAERDFGIK 126 (324)
T ss_pred CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCE-EEEEEeCccccccCCCCHHHHHHHHHHHHHHHHHhcCCe
Confidence 4577888877777777789999999999999999999995 55532 10 012345556778998
Q ss_pred EEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEe
Q 022028 164 ACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHV 243 (304)
Q Consensus 164 ~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~ 243 (304)
+.+...++... . .+.+++..++...+.. +..+.+.+.. .....+++.++.+++.|+++|+++.+|+
T Consensus 127 ~~li~~~~r~~----------~-~~~~~~~~~~~~~~~~--~~vvg~~l~~-~e~~~~~~~~~~~~~~A~~~g~~i~~Ha 192 (324)
T TIGR01430 127 SRLILCGMRHK----------Q-PEAAEETLELAKPYKE--QTIVGFGLAG-DERGGPPPDFVRAFAIARELGLHLTVHA 192 (324)
T ss_pred EEEEEEEeCCC----------C-HHHHHHHHHHHHhhcc--CcEEEecCCC-CCCCCCHHHHHHHHHHHHHCCCCeEEec
Confidence 86655554321 1 1233334444444332 1233333332 2245678899999999999999999999
Q ss_pred cCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCc--chhc-----------ccccccccc
Q 022028 244 AEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH--TEVN-----------CTFGNFKYA 300 (304)
Q Consensus 244 ~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~--~di~-----------~p~sN~~l~ 300 (304)
+|+....+ ..+.+...|. . .++||+++++ ++++ ||.||++++
T Consensus 193 ~E~~~~~~-----------~~~~~~~~g~---~-ri~Hg~~l~~~~~~i~~l~~~gi~v~~cP~Sn~~l~ 247 (324)
T TIGR01430 193 GELGGPES-----------VREALDDLGA---T-RIGHGVRALEDPELLKRLAQENITLEVCPTSNVALG 247 (324)
T ss_pred CCCCChHH-----------HHHHHHHcCc---h-hcchhhhhccCHHHHHHHHHcCceEEECCccccccc
Confidence 99843211 1122223444 2 4899999954 4555 999999987
No 99
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=99.37 E-value=1.7e-11 Score=106.01 Aligned_cols=180 Identities=20% Similarity=0.276 Sum_probs=123.1
Q ss_pred CCCCCCCCC-CCcccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhh-----hcCCCceEEeCCCCEeec
Q 022028 7 GGGSSSGSL-GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQ-----FSQMADQIIDLQSQILLP 80 (304)
Q Consensus 7 ~~~~~~~~~-~~~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~-----~~~~~~~vID~~g~iv~P 80 (304)
|++++.... ....+++|+|+.|++.. .+ -+++|.|+||||.+||.+..+..+ ..+...++|-++|+++..
T Consensus 54 GMgqs~~~~~~~~~D~VITNa~IiD~~---Gi-~KADiGikdGrI~~IGKaGNPd~~dgV~iiiG~sTe~iagEg~I~TA 129 (568)
T COG0804 54 GMGQSQRLTRAGALDLVITNALIIDYW---GI-VKADIGIKDGRIAGIGKAGNPDIMDGVTIIIGPSTEIIAGEGKIVTA 129 (568)
T ss_pred ccCcCccccccCcccEEEeeeEEEecc---ce-EEeecccccceEEEeecCCCCCccCCceEEeccccceecCCceEEee
Confidence 445444433 33457899999999853 45 478999999999999987764321 112356899999999999
Q ss_pred cccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeec---------------C
Q 022028 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAE---------------A 145 (304)
Q Consensus 81 G~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d---------------~ 145 (304)
|-||+|+|.-. |+++. ++|.+|+||+.. .
T Consensus 130 GGiDtHiHfI~----------------------------Pqqi~--------~Al~sGiTtmiGGGtGpa~Gt~aTT~Tp 173 (568)
T COG0804 130 GGIDTHIHFIC----------------------------PQQIE--------EALASGITTMIGGGTGPADGTNATTCTP 173 (568)
T ss_pred ccccceeEEec----------------------------HHHHH--------HHHhcCcEEEecCccCCCCCcccccccC
Confidence 99999999843 33333 478899999863 2
Q ss_pred CCCCHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHH
Q 022028 146 GGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLL 225 (304)
Q Consensus 146 ~~~~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l 225 (304)
+.++...++++++...+..-+ ...|....+. ...+.++. |- +++..|--|..++..+
T Consensus 174 G~w~i~rMl~a~d~~p~N~g~----lgKGn~s~~~-----------~L~Eqi~a------Ga--~GlKlHEDWG~TpaaI 230 (568)
T COG0804 174 GPWHIARMLQAADGLPMNIGF----LGKGNASNPA-----------PLAEQIEA------GA--IGLKLHEDWGATPAAI 230 (568)
T ss_pred CHHHHHHHHHhhhcCceeeEE----eecCCCCCch-----------hHHHHHhh------cc--ceeEeecccCCCHHHH
Confidence 234577889998888777622 1122211111 11222222 22 3566777899999999
Q ss_pred HHHHHHHHHhCCeeeEEecCChhhH
Q 022028 226 LETRDMAREFKTGIHMHVAEIPYEN 250 (304)
Q Consensus 226 ~~~~~~a~~~~~~~~~H~~E~~~~~ 250 (304)
+.++++|.++++.+.+|- ++.+|.
T Consensus 231 ~~~L~VAD~~DvqVaiHt-DTLNEs 254 (568)
T COG0804 231 DTCLSVADEYDVQVAIHT-DTLNES 254 (568)
T ss_pred HHHHhhhhhhceEEEEee-cccccc
Confidence 999999999999999994 454443
No 100
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.32 E-value=7.7e-12 Score=112.21 Aligned_cols=88 Identities=18% Similarity=0.234 Sum_probs=56.9
Q ss_pred CCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHH
Q 022028 47 QDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYIS 126 (304)
Q Consensus 47 ~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~ 126 (304)
||||++|++.... +.+.++||++|++|+|||||+|+|++.+.........+..++. .+....++..+.+..
T Consensus 1 ~gkI~~i~~~~~~-----~~~~~vid~~g~~v~Pg~id~h~h~~~~~~~~~~~~~d~~e~~----~~~~p~~~~~d~~~~ 71 (359)
T cd01309 1 DGKIVAVGAEITT-----PADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDANEET----DPVTPHVRAIDGINP 71 (359)
T ss_pred CCEEEEEcCCCCC-----CCCCeEEeCCCCEEcCcEEecccccCccccCCCcCcCCccccC----CCCCceeEeecccCC
Confidence 6999999986542 2367899999999999999999999886554322211111011 111122333344444
Q ss_pred HHHHHHHHHhcCcceee
Q 022028 127 TLLCGIELIHSGVTCFA 143 (304)
Q Consensus 127 ~~~~~~~~l~~GvTtv~ 143 (304)
....+..+..+|||++.
T Consensus 72 ~~~~~~~a~~~GvT~~~ 88 (359)
T cd01309 72 DDEAFKRARAGGVTTVQ 88 (359)
T ss_pred CCHhHHHHHhcCceEEE
Confidence 44566678899999984
No 101
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.22 E-value=4.1e-11 Score=101.09 Aligned_cols=94 Identities=31% Similarity=0.435 Sum_probs=64.4
Q ss_pred EEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCCC
Q 022028 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDV 101 (304)
Q Consensus 22 li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~~ 101 (304)
++.|++|+..| +++ ++.|+|+||+|..|...... ...-+|++|.+++|||||+|+--..-.+ ...
T Consensus 2 ~lsnarivl~D---~v~-~gsv~i~DG~Ia~i~~g~s~-------~~~~~d~eGd~LLPGlIeLHtD~lE~~~----~PR 66 (377)
T COG3454 2 ILSNARIVLED---RVV-NGSVLIRDGLIADIDEGISP-------LAAGIDGEGDYLLPGLIELHTDNLERFM----TPR 66 (377)
T ss_pred ccccceEEeec---cee-eeeEEEecceEeeeccccCc-------ccccccCCCCeecccchhhcchhhhccc----CCC
Confidence 57899999866 565 49999999999999887642 2457899999999999999986543211 011
Q ss_pred CccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecC
Q 022028 102 DLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEA 145 (304)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~ 145 (304)
+-.. ||. ..+....=..++.+|+|||+|.
T Consensus 67 PgV~------wp~---------~aAi~ahD~~l~~sGITTv~da 95 (377)
T COG3454 67 PGVR------WPP---------IAAILAHDAQLAASGITTVLDA 95 (377)
T ss_pred CCCC------CCc---------hHHHHHhhHHHHhcChhhHHhh
Confidence 1111 211 1122223356789999999874
No 102
>COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion]
Probab=99.20 E-value=7.7e-10 Score=96.05 Aligned_cols=67 Identities=15% Similarity=0.295 Sum_probs=53.0
Q ss_pred CcccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchh
Q 022028 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (304)
Q Consensus 17 ~~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~ 91 (304)
|+..++|||+.|+++-.+.. -+..+|.|+||||+.-..-. +...++||++|+++|||-||.|+|...
T Consensus 1 m~~e~~IKNg~V~dPlngin-gE~MDI~vkdGKIVe~sev~-------~~~aKVIDA~gklvm~GGvD~HsHvAG 67 (575)
T COG1229 1 MAMEILIKNGIVYDPLNGIN-GEKMDICVKDGKIVEESEVS-------ESKAKVIDASGKLVMPGGVDSHSHVAG 67 (575)
T ss_pred CCceEEeecCEEecCccCCC-CceeeEEeecCeEeeecccc-------cccceEEeccCcEEecCcccccccccc
Confidence 45678999999998654321 26789999999999754332 124689999999999999999999976
No 103
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.18 E-value=2.7e-11 Score=105.61 Aligned_cols=70 Identities=19% Similarity=0.317 Sum_probs=55.8
Q ss_pred cccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhh
Q 022028 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQL 93 (304)
Q Consensus 18 ~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~ 93 (304)
.++++|+++.|+++.+.. .+ ..+|.|+||+|++|+.....- ..+.++||+.|++|.|||||.|+|-+...
T Consensus 5 ~YD~ViR~g~ifDGtGnp-~f-~tdvgIrDGvIaav~kg~~dg----~~~~eevDaagriVaPGFIDvHtHyD~~~ 74 (579)
T COG3653 5 TYDVVIRDGLIFDGTGNP-PF-TTDVGIRDGVIAAVAKGALDG----TGCPEEVDAAGRIVAPGFIDVHTHYDAEV 74 (579)
T ss_pred eeeEEEeeceEEeCCCCC-cc-ccccccccceEEEEecccccc----cCCCeeecccCcEecccEEEeeeccccee
Confidence 577899999999987643 33 349999999999999865421 11348999999999999999999986633
No 104
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=99.18 E-value=2.6e-10 Score=103.03 Aligned_cols=70 Identities=7% Similarity=0.069 Sum_probs=49.1
Q ss_pred cCCCH-HHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhcccccc
Q 022028 218 MNATD-RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVNCTFGN 296 (304)
Q Consensus 218 ~~~~~-e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~~p~sN 296 (304)
+..++ +.+..+.++|++++++++++...+....+ .++...+.|++....++.|+.+++++++....+|
T Consensus 166 p~~~e~~~v~~~~~la~~~~~~i~i~h~ss~~~l~-----------~i~~~~~~G~~~~~e~~~h~L~ld~~~~~~~~~~ 234 (374)
T cd01317 166 PPEAETIMVARDLELAEATGARVHFQHLSTARSLE-----------LIRKAKAKGLPVTAEVTPHHLLLDDEALESYDTN 234 (374)
T ss_pred CHHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHH-----------HHHHHHHCCCCEEEEecHHHHhcCHHHHhccCCc
Confidence 34444 36778899999999999884444554443 3455566787766788999999999998644444
Q ss_pred cc
Q 022028 297 FK 298 (304)
Q Consensus 297 ~~ 298 (304)
.+
T Consensus 235 ~k 236 (374)
T cd01317 235 AK 236 (374)
T ss_pred eE
Confidence 33
No 105
>PRK01211 dihydroorotase; Provisional
Probab=99.10 E-value=1.8e-10 Score=104.57 Aligned_cols=73 Identities=25% Similarity=0.292 Sum_probs=54.4
Q ss_pred eeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCCCCccccccccccCccCC
Q 022028 38 FRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESN 117 (304)
Q Consensus 38 ~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~ 117 (304)
...++|.|+||||++|++... +.++||++| +|+|||||+|+|+.... .
T Consensus 13 ~~~~di~I~dGkI~~i~~~~~--------~~~~ida~g-~vlPG~ID~HvH~r~pg-----------------------~ 60 (409)
T PRK01211 13 FDYLEIEVEDGKIKSIKKDAG--------NIGKKELKG-AILPAATDIHVHFRTPG-----------------------E 60 (409)
T ss_pred EEEEEEEEECCEEEEecCCCC--------CceEEEecc-EEcCCeEEeeeccCCCC-----------------------C
Confidence 356799999999999976431 357899999 99999999999985411 0
Q ss_pred CChHHHHHHHHHHHHHHHhcCcceeecCC
Q 022028 118 MTEEDSYISTLLCGIELIHSGVTCFAEAG 146 (304)
Q Consensus 118 ~~~e~~~~~~~~~~~~~l~~GvTtv~d~~ 146 (304)
-..|++...+ +.++..||||++++.
T Consensus 61 ~~ked~~s~s----~AAaaGGvTtv~dmP 85 (409)
T PRK01211 61 TEKEDFSTGT----LSAIFGGTTFIMDMP 85 (409)
T ss_pred cccCcHHHHH----HHHHcCCcEEEEECC
Confidence 1134444443 346889999999985
No 106
>PRK04250 dihydroorotase; Provisional
Probab=99.10 E-value=2.3e-10 Score=103.79 Aligned_cols=85 Identities=21% Similarity=0.356 Sum_probs=59.8
Q ss_pred ccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCCCCcc
Q 022028 25 NAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLM 104 (304)
Q Consensus 25 ~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~~~~~ 104 (304)
++++++.+ .+. +++|+|+||+|.+|++... .+.++||++|++|+|||||+|+|+... .
T Consensus 3 ~~~v~~~~---~~~-~~~i~i~~G~I~~i~~~~~-------~~~~~iD~~g~~v~PG~ID~HvH~~~~--------~--- 60 (398)
T PRK04250 3 EGKFLLKG---RIV-EGGIGIENGRISKISLRDL-------KGKEVIKVKGGIILPGLIDVHVHLRDF--------E--- 60 (398)
T ss_pred eEEEEECC---cEE-EEEEEEECCEEEEeeCCCC-------CCCeEEECCCCEEccCEEeccccccCC--------C---
Confidence 56777743 333 7899999999999974111 145899999999999999999998320 0
Q ss_pred ccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCC
Q 022028 105 TWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG 147 (304)
Q Consensus 105 ~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~ 147 (304)
....+++ ......++..||||++++..
T Consensus 61 ------------~~~~e~~----~~~~~aa~~gGvTtv~~~p~ 87 (398)
T PRK04250 61 ------------ESYKETI----ESGTKAALHGGITLVFDMPN 87 (398)
T ss_pred ------------CCcHHHH----HHHHHHHHhCCeEEEEECCC
Confidence 0112232 33445678999999999753
No 107
>KOG3892 consensus N-acetyl-glucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=99.05 E-value=8.8e-10 Score=90.88 Aligned_cols=136 Identities=22% Similarity=0.273 Sum_probs=91.5
Q ss_pred EEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchhhhhhcccCC
Q 022028 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (304)
Q Consensus 21 ~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~ 100 (304)
+-|+|++|+... +. ..-+++|+||||..-.+-. .+....+++.|||+|+++.|||||.....++.
T Consensus 14 lQFtNCrilR~g---~l-~~edlWVR~GRIldpe~vF---FeErt~Ad~riDCgG~IlaPGfIDlQiNGGfG-------- 78 (407)
T KOG3892|consen 14 LQFTNCRILRGG---KL-LREDLWVRGGRILDPEKVF---FEERTVADERIDCGGRILAPGFIDLQINGGFG-------- 78 (407)
T ss_pred eeeeeeEEeeCC---ce-eehheeEeCCeecCccccc---ceeccchhheeccCCeeecCceEEEEecCccc--------
Confidence 458999999843 33 4569999999998644311 00012366899999999999999999988762
Q ss_pred CCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCC-CCCHHH---H----------HHHHHHcCCeEEe
Q 022028 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-GQHVSE---M----------AKAVELLGLRACL 166 (304)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~~~---~----------~~~~~~~gir~~~ 166 (304)
.+| ..+.|++..+....+++++++|+|+++-.- ....+. + -+.+..+|++.
T Consensus 79 vDF-------------S~dte~~~eGvAlVAr~ll~hGvtsf~Pt~~tsp~~~YHkilP~ip~~~~~p~GaG~LG~Hl-- 143 (407)
T KOG3892|consen 79 VDF-------------SQDTEDVGEGVALVARQLLSHGVTSFCPTLVTSPPEVYHKILPQIPVKSGGPHGAGVLGLHL-- 143 (407)
T ss_pred ccc-------------ccchhhhhhhHHHHHHHHHhcCCCcCCCccccCCchhhhhhccccccccCCCCccceeeeec--
Confidence 222 134567778888889999999999987421 010110 0 01112223333
Q ss_pred ecccccCCCCCCCCcccCChHHHHHH
Q 022028 167 VQSTMDCGEGLPASWAVRTTDDCIQS 192 (304)
Q Consensus 167 ~~~~~d~g~~~~~~~~~~~~~~~~~~ 192 (304)
+||+++++.++..++..++.
T Consensus 144 ------EGPFIs~~KrG~HPE~~i~s 163 (407)
T KOG3892|consen 144 ------EGPFISREKRGAHPEAHIRS 163 (407)
T ss_pred ------cCCccChhhcCCCHHHHHhc
Confidence 78999999999888888874
No 108
>PRK00369 pyrC dihydroorotase; Provisional
Probab=98.75 E-value=1.6e-08 Score=91.53 Aligned_cols=74 Identities=26% Similarity=0.249 Sum_probs=53.8
Q ss_pred eeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeC-CCCEeeccccccCccchhhhhhcccCCCCccccccccccCccCC
Q 022028 39 RNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDL-QSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESN 117 (304)
Q Consensus 39 ~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~-~g~iv~PG~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~ 117 (304)
.+..|.|++|+|..|++..+ .+.++||+ +|++|+|||||+|+|+.... +
T Consensus 12 ~~~~~~~~~~~~~~i~~~~~-------~~~~~id~~~G~~vlPG~ID~HvH~r~pg---------~-------------- 61 (392)
T PRK00369 12 GKEIKEICINFDRRIKEIKS-------RCKPDLDLPQGTLILPGAIDLHVHLRGLK---------L-------------- 61 (392)
T ss_pred CCceEEEeeeeeeeEeeccC-------CCCceeecCCCCEEeCCEEEcccccCCCC---------C--------------
Confidence 45678888999988887531 25689999 69999999999999995410 0
Q ss_pred CChHHHHHHHHHHHHHHHhcCcceeecCC
Q 022028 118 MTEEDSYISTLLCGIELIHSGVTCFAEAG 146 (304)
Q Consensus 118 ~~~e~~~~~~~~~~~~~l~~GvTtv~d~~ 146 (304)
...|++...+ +.++..|+||++++.
T Consensus 62 ~~~ed~~sgs----~AAa~GGvTtv~~mP 86 (392)
T PRK00369 62 SYKEDVASGT----SEAAYGGVTLVADMP 86 (392)
T ss_pred cccccHHHHH----HHHHhCCcEEEEECC
Confidence 0123444433 346889999999985
No 109
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=98.73 E-value=1.8e-07 Score=85.89 Aligned_cols=135 Identities=15% Similarity=0.245 Sum_probs=73.5
Q ss_pred eCCCCEeeccccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCC----
Q 022028 72 DLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---- 147 (304)
Q Consensus 72 D~~g~iv~PG~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~---- 147 (304)
|++|++|+|||||+|+|+..+. ++++++ ...++..||||+.+...
T Consensus 1 Da~G~~v~PG~ID~H~Hi~~~~------------------------~~~~~~-------~~~a~~~GvTtvv~~p~~~~~ 49 (422)
T cd01295 1 DAEGKYIVPGFIDAHLHIESSM------------------------LTPSEF-------AKAVLPHGTTTVIADPHEIAN 49 (422)
T ss_pred CCCCCEEccCEEEccCCcCCCC------------------------CChHHH-------HHHHHCCCcEEEEeCCCCCCc
Confidence 7899999999999999996521 122221 34578899999998531
Q ss_pred ----CCHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEE--EeeCcccCCC
Q 022028 148 ----QHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIW--FGIRQIMNAT 221 (304)
Q Consensus 148 ----~~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~ 221 (304)
...+.+.+.++...++.+...+. ..+..+.+... .....++..++++. .+.+.+. +..... ...
T Consensus 50 v~g~~~~~~~~~~a~~~p~~~~~~~p~--~vp~t~~e~~g--~~~~~~~i~~l~~~-----~~vvglgE~md~~~v-~~~ 119 (422)
T cd01295 50 VAGVDGIEFMLEDAKKTPLDIFWMLPS--CVPATPFETSG--AELTAEDIKELLEH-----PEVVGLGEVMDFPGV-IEG 119 (422)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEeCCC--cCCCCCCCCCC--CcCCHHHHHHHhcC-----CCCcEEEEeccCccc-cCC
Confidence 12334455555566666544321 11111111000 00012233333321 1232222 111111 235
Q ss_pred HHHHHHHHHHHHHhCCeeeEEecCCh
Q 022028 222 DRLLLETRDMAREFKTGIHMHVAEIP 247 (304)
Q Consensus 222 ~e~l~~~~~~a~~~~~~~~~H~~E~~ 247 (304)
++.+.+..+.|+++++++.+|+....
T Consensus 120 ~~~l~~~i~~A~~~g~~v~~Ha~g~~ 145 (422)
T cd01295 120 DDEMLAKIQAAKKAGKPVDGHAPGLS 145 (422)
T ss_pred cHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 56777788999999999999986544
No 110
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=98.45 E-value=8.7e-06 Score=71.10 Aligned_cols=155 Identities=11% Similarity=0.070 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCC----CHHHHHHHHHHcCCeEEeecccccCCCCCCCCcc-cCChHHHHHHHHHHHH
Q 022028 124 YISTLLCGIELIHSGVTCFAEAGGQ----HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWA-VRTTDDCIQSQKELYA 198 (304)
Q Consensus 124 ~~~~~~~~~~~l~~GvTtv~d~~~~----~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~-~~~~~~~~~~~~~~~~ 198 (304)
...+...+.++.++|+|++++.+.. ....+.+.+++.|++.+.+..+.... ..+.+. ....+...+...+.+.
T Consensus 31 ~~~~~~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~~~~g~~v~~~~G~hp~~--~~~~~~~~~~~~~l~~~~~~~l~ 108 (293)
T cd00530 31 VEAAKEELKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNIVAATGFYKDA--FYPEWVRLRSVEELTDMLIREIE 108 (293)
T ss_pred HHHHHHHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHHHHhCCcEEEecccCCCc--cChHHHhhCCHHHHHHHHHHHHH
Confidence 4567778889999999999988742 35667788888998876554332211 011111 1111222222222222
Q ss_pred HHcCCC---CCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCC
Q 022028 199 KHHHAA---DGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQN 275 (304)
Q Consensus 199 ~~~~~~---~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~ 275 (304)
...... .+.++.............+.+++.+++|++.|+++.+|+.+.....+ ..++.+.+.|+..+
T Consensus 109 ~~~~~~~i~~~~IGEigld~~~~~~q~~~f~~~~~lA~~~~~Pv~iH~~~~~~~~~----------~~l~~l~~~g~~~~ 178 (293)
T cd00530 109 EGIEGTGIKAGIIKEAGGSPAITPLEEKVLRAAARAQKETGVPISTHTQAGLTMGL----------EQLRILEEEGVDPS 178 (293)
T ss_pred hccccCCcCceEEEEeecCCCCCHHHHHHHHHHHHHHHHHCCeEEEcCCCCccccH----------HHHHHHHHcCCChh
Confidence 211111 01121111111222334447889999999999999999876411111 15777888888766
Q ss_pred CeeEEEecc-CCcchh
Q 022028 276 NLLSAHTVW-VNHTEV 290 (304)
Q Consensus 276 ~~~~~H~~~-l~~~di 290 (304)
++++.||.. -+.+++
T Consensus 179 ~~vi~H~~~~~~~~~~ 194 (293)
T cd00530 179 KVVIGHLDRNDDPDYL 194 (293)
T ss_pred heEEeCCCCCCCHHHH
Confidence 788999984 343433
No 111
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=98.35 E-value=1.3e-05 Score=71.49 Aligned_cols=172 Identities=15% Similarity=0.221 Sum_probs=86.2
Q ss_pred CEeeccccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCC-----CH
Q 022028 76 QILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----HV 150 (304)
Q Consensus 76 ~iv~PG~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~-----~~ 150 (304)
++|+||+||+|+|+..... ....|++...+ +.++..|+||++++... ..
T Consensus 1 ~~vlPG~iD~HvH~r~pg~----------------------~~~~e~~~t~t----~aA~~GG~Ttv~~mpn~~p~~~~~ 54 (337)
T cd01302 1 LLVLPGFIDIHVHLRDPGG----------------------TTYKEDFESGS----RAAAAGGVTTVIDMPNTGPPPIDL 54 (337)
T ss_pred CEecCCeeEeeeccCCCCC----------------------CCchhHHHHHH----HHHHhCCCcEEEECCCCCCCCCcH
Confidence 4799999999999954110 00134444433 45688999999997531 12
Q ss_pred HHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCc-cc-CCCHHHHHHH
Q 022028 151 SEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQ-IM-NATDRLLLET 228 (304)
Q Consensus 151 ~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~-~~~~e~l~~~ 228 (304)
+.+....+...-+.++-..+. +. .... ..+++..++. ..+...++.+..... .. ..+++.+.++
T Consensus 55 ~~~~~~~~~a~~~~~~d~~~~--~~-~~~~-------~~~~el~~l~----~~Gv~g~K~f~~~~~~~~~~~~~~~l~~~ 120 (337)
T cd01302 55 PAIELKIKLAEESSYVDFSFH--AG-IGPG-------DVTDELKKLF----DAGINSLKVFMNYYFGELFDVDDGTLMRT 120 (337)
T ss_pred HHHHHHHHHhCcCcEeeEEEE--Ee-ccCc-------cCHHHHHHHH----HcCCcEEEEEEeccCCCccccCHHHHHHH
Confidence 333222233222221111110 00 0010 1122222222 122234565543222 11 4577778888
Q ss_pred HHHHHHhCCeeeEEecCChhhHHHHHHhcCCC--------CCHHHHH---HHhCCCCCCeeEEEeccCCcchhc
Q 022028 229 RDMAREFKTGIHMHVAEIPYENQVVMDTRKVD--------HGTVTFL---DKIEFLQNNLLSAHTVWVNHTEVN 291 (304)
Q Consensus 229 ~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~--------~~~~~~l---~~~g~l~~~~~~~H~~~l~~~di~ 291 (304)
++.+++.+.++.+|. | .....+ +..|.. ...++.+ ++.|+----.++.|...|+++++.
T Consensus 121 ~~~~~~~g~~v~~H~-E--r~~~la-~~~g~~l~i~Hiss~~~le~i~~ak~~g~~vt~ev~ph~L~l~~~~~~ 190 (337)
T cd01302 121 FLEIASRGGPVMVHA-E--RAAQLA-EEAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVCPHHLFLDESMLR 190 (337)
T ss_pred HHHHHhcCCeEEEeH-H--HHHHHH-HHhCCcEEEEeCCCHHHHHHHHHHHHCCCcEEEEcChhhheeCHHHhh
Confidence 888888899999996 4 222222 224432 1133333 344541112357888888887764
No 112
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=98.14 E-value=2.7e-05 Score=68.34 Aligned_cols=157 Identities=13% Similarity=0.072 Sum_probs=88.3
Q ss_pred CChHHHHHHHHHHHHHHHhcCcceee---cCC------CCCH----HHHH----HHHHHcC-CeEEeecccccCCCCCCC
Q 022028 118 MTEEDSYISTLLCGIELIHSGVTCFA---EAG------GQHV----SEMA----KAVELLG-LRACLVQSTMDCGEGLPA 179 (304)
Q Consensus 118 ~~~e~~~~~~~~~~~~~l~~GvTtv~---d~~------~~~~----~~~~----~~~~~~g-ir~~~~~~~~d~g~~~~~ 179 (304)
.+.++++..+...+..+.+.||..+- +.. +... +.+. ++....+ +...+-..+.-. .++
T Consensus 39 ~~~~~l~~~~~~~~~~~~~d~V~Y~E~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~lI~~~~R~---~~~ 115 (305)
T cd00443 39 QKGEALARALKEVIEEFAEDNVQYLELRTTPRLLETEKGLTKEQYWLLVIEGISEAKQWFPPIKVRLILSVDRR---GPY 115 (305)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEcchhhcCcccCCCHHHHHHHHHHHHHHHHHHcCCeeEeEEEEEeCC---CCh
Confidence 45677777788888999999998762 111 1111 1222 2223333 433222111111 111
Q ss_pred CcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCC---CHHHHHHHHHHHHHhC-CeeeEEecCChhhHHHHHH
Q 022028 180 SWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNA---TDRLLLETRDMAREFK-TGIHMHVAEIPYENQVVMD 255 (304)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~e~l~~~~~~a~~~~-~~~~~H~~E~~~~~~~~~~ 255 (304)
+ ..........++...+.+ . .+++...+.+.. +...+...++.|++.| +++.+|++|+.....
T Consensus 116 ~----~~~~~~~~~~~l~~~~~~----~-vvG~Dl~g~E~~~~~~~~~f~~~~~~ar~~g~l~~t~HaGE~~~~~~---- 182 (305)
T cd00443 116 V----QNYLVASEILELAKFLSN----Y-VVGIDLVGDESKGENPLRDFYSYYEYARRLGLLGLTLHCGETGNREE---- 182 (305)
T ss_pred h----hhhhhHHHHHHHHHHhcC----C-EEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCcceEEeecCCCChHH----
Confidence 1 001122334444444432 2 345665555444 5777888999999999 999999999843221
Q ss_pred hcCCCCCHHHHHHHhCCCCCCeeEEEeccCCc--chhc-----------ccccccccccc
Q 022028 256 TRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH--TEVN-----------CTFGNFKYAVH 302 (304)
Q Consensus 256 ~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~--~di~-----------~p~sN~~l~~~ 302 (304)
..+...++- .-+.||+++.+ +.++ ||+||..++.-
T Consensus 183 ----------v~~~~~~~~--~RIgHg~~~~~~p~~~~~l~~~~i~ie~CP~SN~~~~~~ 230 (305)
T cd00443 183 ----------LLQALLLLP--DRIGHGIFLLKHPELIYLVKLRNIPIEVCPTSNVVLGTV 230 (305)
T ss_pred ----------HHHHHHhcc--ceeeceEecCCCHHHHHHHHHcCCEEEECcchhhhhcCC
Confidence 111122232 25999999988 5554 99999998753
No 113
>PRK09875 putative hydrolase; Provisional
Probab=98.12 E-value=0.00017 Score=62.55 Aligned_cols=151 Identities=12% Similarity=0.080 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhcCcceeecCCC----CCHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHH
Q 022028 125 ISTLLCGIELIHSGVTCFAEAGG----QHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKH 200 (304)
Q Consensus 125 ~~~~~~~~~~l~~GvTtv~d~~~----~~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (304)
..+..-+.++.+.|..|++|... +....+.+..++.|++.+.+-.+.. .+..|......+.++..+...+.+...
T Consensus 34 ~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv~~TG~y~-~~~~p~~~~~~~~e~la~~~i~ei~~G 112 (292)
T PRK09875 34 AFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQ-DAFFPEHVATRSVQELAQEMVDEIEQG 112 (292)
T ss_pred HHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEEEcCcCCC-CccCCHHHhcCCHHHHHHHHHHHHHHh
Confidence 33444556677889999998754 4567888889999999977655443 223344333445555555555555555
Q ss_pred cCC---CCCCe-EEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCC
Q 022028 201 HHA---ADGRI-RIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNN 276 (304)
Q Consensus 201 ~~~---~~~~i-~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~ 276 (304)
.+. ..|.| +++......-..-.+.+++..+.+++.|.++.+|........+ -++.+.+.|+--.+
T Consensus 113 i~gt~ikaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~~~g~e-----------~l~il~e~Gvd~~r 181 (292)
T PRK09875 113 IDGTELKAGIIAEIGSSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMGLE-----------QLALLQAHGVDLSR 181 (292)
T ss_pred hccCCCcccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCcEEEcCCCccchHH-----------HHHHHHHcCcCcce
Confidence 431 23444 3333321111122336788888888899999999654322111 46777888885568
Q ss_pred eeEEEeccCCc
Q 022028 277 LLSAHTVWVNH 287 (304)
Q Consensus 277 ~~~~H~~~l~~ 287 (304)
+++.|+-...+
T Consensus 182 vvi~H~d~~~d 192 (292)
T PRK09875 182 VTVGHCDLKDN 192 (292)
T ss_pred EEEeCCCCCCC
Confidence 99999875433
No 114
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=98.01 E-value=0.00011 Score=66.15 Aligned_cols=45 Identities=27% Similarity=0.384 Sum_probs=31.0
Q ss_pred CCEeeccccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCC
Q 022028 75 SQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG 146 (304)
Q Consensus 75 g~iv~PG~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~ 146 (304)
|++|+|||||+|+|+.... + -..|++...+ +.++..|+||++++.
T Consensus 1 G~~vlPG~iD~HvH~r~pg---------~--------------~~~ed~~s~t----~aA~~GGvTtv~~mP 45 (361)
T cd01318 1 GLLILPGVIDIHVHFREPG---------L--------------TYKEDFVSGS----RAAAAGGVTTVMDMP 45 (361)
T ss_pred CCEEecCeeEeeecCCCCC---------C--------------CccCcHHHHH----HHHHcCCCEEEEECC
Confidence 6899999999999995410 0 0123433333 346889999999975
No 115
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=97.84 E-value=1.1e-05 Score=69.80 Aligned_cols=63 Identities=22% Similarity=0.334 Sum_probs=36.8
Q ss_pred eCCCCEeeccccccCcc--chhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCCCCC
Q 022028 72 DLQSQILLPGFVNTHVH--TSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH 149 (304)
Q Consensus 72 D~~g~iv~PG~ID~H~H--l~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~ 149 (304)
|++|++|+|||||+|+| +.. ...... ...........++.+|+|++.+.....
T Consensus 1 D~~G~~v~PGlID~H~H~~~~~--------~~~~~~-----------------~~~~~~~~~~~~~~~G~tt~~~~~~~~ 55 (304)
T PF13147_consen 1 DASGKYVLPGLIDLHVHGPLGR--------SEDGAP-----------------WAEQAAAASAAALAGGVTTVVDMPGTN 55 (304)
T ss_dssp E-TTSEEEE-EEEEEEECCSSC--------ETTTEE-----------------HSSHHHHHHHHHHHTTEEEEEESSSSS
T ss_pred CCCCCEEccceeeeeeCCCcCC--------CCCCcc-----------------chhhHHHHHHHHHhCCEeEEecCCCCC
Confidence 88999999999999999 211 000000 011222334567899999999866555
Q ss_pred HHHHHHHHHH
Q 022028 150 VSEMAKAVEL 159 (304)
Q Consensus 150 ~~~~~~~~~~ 159 (304)
..........
T Consensus 56 ~~~~~~~~~~ 65 (304)
T PF13147_consen 56 PEELNRARRR 65 (304)
T ss_dssp HHHHHHHHHH
T ss_pred chhhHHHHhh
Confidence 5544444333
No 116
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=97.75 E-value=0.00028 Score=61.70 Aligned_cols=152 Identities=10% Similarity=0.017 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhcCcceeecCCC----CCHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHH
Q 022028 124 YISTLLCGIELIHSGVTCFAEAGG----QHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAK 199 (304)
Q Consensus 124 ~~~~~~~~~~~l~~GvTtv~d~~~----~~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (304)
...+..-+..+-..|+.|++|... .....+.+..++.|++.+.+-.+.-. +..|+.....+.++..+...+.+..
T Consensus 37 ~~~~~~El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~II~~TG~y~~-~~~p~~~~~~s~e~la~~~i~Ei~~ 115 (308)
T PF02126_consen 37 VEAAVAELKEFKAAGGRTIVDATPIGLGRDVEALREISRRTGVNIIASTGFYKE-PFYPEWVREASVEELADLFIREIEE 115 (308)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHHHT-EEEEEEEE-SG-GCSCHHHHTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHHhCCeEEEeCCCCcc-ccCChhhhcCCHHHHHHHHHHHHHh
Confidence 444555567777889999999764 45678889999999999766544321 2222222233333333334444444
Q ss_pred HcC---CCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCCh-hhHHHHHHhcCCCCCHHHHHHHhCCCCC
Q 022028 200 HHH---AADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP-YENQVVMDTRKVDHGTVTFLDKIEFLQN 275 (304)
Q Consensus 200 ~~~---~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~-~~~~~~~~~~g~~~~~~~~l~~~g~l~~ 275 (304)
-.+ ...|.|+.+.+.......-+..++++...+++.|+++.+|..... ...+ .++.|.+.|+-=.
T Consensus 116 GidgT~ikaG~Ik~~~~~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~~~~~e-----------~~~il~e~Gv~~~ 184 (308)
T PF02126_consen 116 GIDGTGIKAGIIKEIGSSNPITPLEEKVLRAAARAHKETGAPISTHTGRGTRMGLE-----------QLDILEEEGVDPS 184 (308)
T ss_dssp -STTSSB-ESEEEEEEBTTBCEHHHHHHHHHHHHHHHHHT-EEEEEESTTGTCHHH-----------HHHHHHHTT--GG
T ss_pred cCCCCccchhheeEeeccCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCCCCcCHHH-----------HHHHHHHcCCChh
Confidence 332 123556654433222122233678788888889999999986654 2222 4677888888556
Q ss_pred CeeEEEeccCCc
Q 022028 276 NLLSAHTVWVNH 287 (304)
Q Consensus 276 ~~~~~H~~~l~~ 287 (304)
++++.|+--..+
T Consensus 185 rvvigH~D~~~D 196 (308)
T PF02126_consen 185 RVVIGHMDRNPD 196 (308)
T ss_dssp GEEETSGGGST-
T ss_pred HeEEeCCCCCCC
Confidence 889999774333
No 117
>PTZ00124 adenosine deaminase; Provisional
Probab=97.71 E-value=0.0014 Score=58.78 Aligned_cols=77 Identities=13% Similarity=0.149 Sum_probs=48.5
Q ss_pred EEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCCh--hhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCc
Q 022028 210 IWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP--YENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH 287 (304)
Q Consensus 210 ~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~--~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~ 287 (304)
+++...+.... ...+..+++.|++.|+++.+|++|.. ..... ..+-+..+|. .| +.||+.+.+
T Consensus 194 vGiDLaG~E~~-~~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~----------v~~ai~~l~~--~R--IGHG~~~~~ 258 (362)
T PTZ00124 194 VGFDHAGHEVD-LKPFKDIFDYVREAGVNLTVHAGEDVTLPNLNT----------LYSAIQVLKV--KR--IGHGIRVAE 258 (362)
T ss_pred EEEeccCCCCC-cHHHHHHHHHHHHCCCCEEEEeCCCCCCCcchh----------HHHHHHHhCC--Cc--cccccccCC
Confidence 45555555432 24477789999999999999999952 21111 1112222333 23 899999963
Q ss_pred c--hhc-----------cccccccccc
Q 022028 288 T--EVN-----------CTFGNFKYAV 301 (304)
Q Consensus 288 ~--di~-----------~p~sN~~l~~ 301 (304)
+ -++ ||+||..++.
T Consensus 259 d~~l~~~l~~~~I~lEvCPtSN~~~~~ 285 (362)
T PTZ00124 259 SQELIDMVKEKDILLEVCPISNVLLNN 285 (362)
T ss_pred CHHHHHHHHHcCCeEEECCcchhhhhc
Confidence 3 222 9999998864
No 118
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=97.62 E-value=0.00074 Score=60.22 Aligned_cols=77 Identities=12% Similarity=0.032 Sum_probs=50.9
Q ss_pred EEEeeCccc--CCCHHHHHHHHHHHHHhC--CeeeEEecCChhh----HHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEE
Q 022028 210 IWFGIRQIM--NATDRLLLETRDMAREFK--TGIHMHVAEIPYE----NQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAH 281 (304)
Q Consensus 210 ~~~~~~~~~--~~~~e~l~~~~~~a~~~~--~~~~~H~~E~~~~----~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H 281 (304)
+++...+.. ..+.+.+..+++.|++.| +++.+|+.|.... .+. ..+-+ .+|. +| +.|
T Consensus 164 vGidL~G~E~~~~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~----------v~~al-~lg~--~R--IGH 228 (345)
T cd01321 164 AGFDLVGQEDAGRPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDEN----------LVDAL-LLNT--KR--IGH 228 (345)
T ss_pred EEEecCCCccCCCCHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhH----------HHHHH-HhCC--Cc--Ccc
Confidence 456665554 345777888999999999 9999999998631 111 11222 1222 34 899
Q ss_pred eccCCcchhc-------------cccccccccc
Q 022028 282 TVWVNHTEVN-------------CTFGNFKYAV 301 (304)
Q Consensus 282 ~~~l~~~di~-------------~p~sN~~l~~ 301 (304)
|+.+.+++-. ||+||..++.
T Consensus 229 G~~~~~dp~ll~~l~~~~I~lEvCPtSN~~~~~ 261 (345)
T cd01321 229 GFALPKHPLLMDLVKKKNIAIEVCPISNQVLGL 261 (345)
T ss_pred ccccCcCHHHHHHHHHcCCeEEECcchhhhhcc
Confidence 9999743221 9999998864
No 119
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=97.60 E-value=0.0024 Score=56.37 Aligned_cols=37 Identities=14% Similarity=0.023 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHH
Q 022028 219 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD 255 (304)
Q Consensus 219 ~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~ 255 (304)
..+++.++++++.|+++|+++.+|..++....+.+.+
T Consensus 159 ~~~~~~~~~iv~~A~~~gl~vasH~d~~~~~v~~a~~ 195 (325)
T cd01306 159 AYAPANRSELAALARARGIPLASHDDDTPEHVAEAHE 195 (325)
T ss_pred hcCHHHHHHHHHHHHHCCCcEEEecCCChHHHHHHHH
Confidence 3467889999999999999999999888777666666
No 120
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=97.57 E-value=0.00054 Score=62.58 Aligned_cols=64 Identities=13% Similarity=0.057 Sum_probs=42.1
Q ss_pred eCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc
Q 022028 214 IRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN 291 (304)
Q Consensus 214 ~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~ 291 (304)
.++....+++.+.++++.|.+.|..+.+|+... .....+. +-+++...- ..+.|+..+++++++
T Consensus 216 ~~g~~~~~~~~l~~~v~~a~~~g~~v~vHa~gd-~a~~~~l----------~a~~~~~~~---~~i~h~~~~~~~~~~ 279 (404)
T PF07969_consen 216 ISGLPSFDPEELEELVRAAREAGLQVAVHAIGD-RAIDEAL----------DAIEAARAR---GRIEHAELIDPDDIE 279 (404)
T ss_dssp ETC--SSSHHHHHHHHHHHHHCT-EEEEEEESH-HHHHHHH----------HHHHHHTCC---HEEEEHCBCCHHHHH
T ss_pred ccccccccchhHHHHHHHHHhcCCeeEEEEcCC-chHHhHH----------HHHHhhccc---ceeeccccCCHHHHH
Confidence 344456778889999999999999999998433 3333332 222233221 179999999998887
No 121
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=97.52 E-value=0.00056 Score=58.15 Aligned_cols=126 Identities=12% Similarity=0.066 Sum_probs=64.8
Q ss_pred HHHHhcCcceeecCCCC--CHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeE
Q 022028 132 IELIHSGVTCFAEAGGQ--HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIR 209 (304)
Q Consensus 132 ~~~l~~GvTtv~d~~~~--~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 209 (304)
.++...|+++++.++.. ..+.+.+.++..+ +.+.+..+. |.+........+++.++.++ . ..+.
T Consensus 22 ~~~~~~Gv~~~v~~~~~~~~~~~~~~~~~~~~-~i~~~~Gih-------P~~~~~~~~~~~~~l~~~l~----~--~~~~ 87 (252)
T TIGR00010 22 ERAKAAGVTAVVAVGTDLEDFLRALELAEKYP-NVYAAVGVH-------PLDVDDDTKEDIKELERLAA----H--PKVV 87 (252)
T ss_pred HHHHHcCCCEEEEecCCHHHHHHHHHHHHHCC-CEEEEEEeC-------cchhhcCCHHHHHHHHHHcc----C--CCEE
Confidence 45678899999876532 2345566667777 665433221 21111111222233333322 1 1111
Q ss_pred EEEeeCccc---C-C----CHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEE
Q 022028 210 IWFGIRQIM---N-A----TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAH 281 (304)
Q Consensus 210 ~~~~~~~~~---~-~----~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H 281 (304)
+++-.+.. . . ..+.+++..++|+++++++.+|......+ .++.+.+.+. ....+.|
T Consensus 88 -~iGEiGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~~~~~-------------~~~~l~~~~~--~~~~i~H 151 (252)
T TIGR00010 88 -AIGETGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHARDAEED-------------VLDILREEKP--KVGGVLH 151 (252)
T ss_pred -EEEecccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecCccHH-------------HHHHHHhcCC--CCCEEEE
Confidence 22222111 1 1 23688888999999999999998754333 3344444441 2345668
Q ss_pred eccCCc
Q 022028 282 TVWVNH 287 (304)
Q Consensus 282 ~~~l~~ 287 (304)
+..-+.
T Consensus 152 ~~~~~~ 157 (252)
T TIGR00010 152 CFTGDA 157 (252)
T ss_pred ccCCCH
Confidence 764443
No 122
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=97.51 E-value=0.0037 Score=55.70 Aligned_cols=23 Identities=4% Similarity=0.036 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHhCCeeeEEe
Q 022028 221 TDRLLLETRDMAREFKTGIHMHV 243 (304)
Q Consensus 221 ~~e~l~~~~~~a~~~~~~~~~H~ 243 (304)
+.+.+..+.+.++++|+++.+|+
T Consensus 111 d~~~l~~~~e~~~~~g~~V~vHa 133 (335)
T cd01294 111 DLEKIYPVLEAMQKLGMPLLVHG 133 (335)
T ss_pred CHHHHHHHHHHHHHcCCeEEEec
Confidence 45678889999999999999996
No 123
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=97.41 E-value=0.0042 Score=50.60 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=63.1
Q ss_pred HHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHH---HHHHHHHHHH
Q 022028 157 VELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDR---LLLETRDMAR 233 (304)
Q Consensus 157 ~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e---~l~~~~~~a~ 233 (304)
+.+.|++..++..+... ++|+++ ......+..+.. ..+. +.++-.+....|++ .+++=+++|+
T Consensus 59 a~~~Gl~~~vavGvHPr--~iP~e~---------~~~l~~L~~~l~-~e~V--vAiGEiGLe~~t~~E~evf~~QL~LA~ 124 (254)
T COG1099 59 AEKAGLKLKVAVGVHPR--AIPPEL---------EEVLEELEELLS-NEDV--VAIGEIGLEEATDEEKEVFREQLELAR 124 (254)
T ss_pred HHhhCceeeEEeccCCC--CCCchH---------HHHHHHHHhhcc-cCCe--eEeeecccccCCHHHHHHHHHHHHHHH
Confidence 57788888776554322 234332 222233333322 1222 24555555566665 5677789999
Q ss_pred HhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEecc
Q 022028 234 EFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVW 284 (304)
Q Consensus 234 ~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~ 284 (304)
++++++.+|-...... +...+ .++.+.+.|+-...+++-|+..
T Consensus 125 e~dvPviVHTPr~nK~-e~t~~-------ildi~~~~~l~~~lvvIDH~N~ 167 (254)
T COG1099 125 ELDVPVIVHTPRRNKK-EATSK-------ILDILIESGLKPSLVVIDHVNE 167 (254)
T ss_pred HcCCcEEEeCCCCcch-hHHHH-------HHHHHHHcCCChhheehhcccH
Confidence 9999999998766443 33322 5777777887555666777754
No 124
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=97.34 E-value=0.011 Score=50.55 Aligned_cols=144 Identities=13% Similarity=0.054 Sum_probs=82.7
Q ss_pred HHHHHHHHhcCcceeecCCC----CCHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCCh-HHHHHHHHHHHHHHcC
Q 022028 128 LLCGIELIHSGVTCFAEAGG----QHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTT-DDCIQSQKELYAKHHH 202 (304)
Q Consensus 128 ~~~~~~~l~~GvTtv~d~~~----~~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 202 (304)
..-+...+..|+.|++|... +....+.+.+++.|++.+.+-.+.-.. +-+.|....+ ++.-+.....+++...
T Consensus 51 ~~e~~~~~a~Gg~TIVD~T~~~~GRdv~~m~~vs~atglnIV~~TGfy~~~--~~p~~~~~~~i~~~ae~~v~ei~~Gi~ 128 (316)
T COG1735 51 IAELKRLMARGGQTIVDATNIGIGRDVLKMRRVAEATGLNIVAATGFYKAA--FHPEYFALRPIEELAEFVVKEIEEGIA 128 (316)
T ss_pred HHHHHHHHHcCCCeEeeCCccccCcCHHHHHHHHHHhCCcEEEeccccccc--cchhHHhhCCHHHHHHHHHHHHHhccc
Confidence 33455677789999998753 456788999999999987654443221 1123332222 2222233333332211
Q ss_pred ---CCCCCeEEEEeeCcccCCCHH---HHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCC
Q 022028 203 ---AADGRIRIWFGIRQIMNATDR---LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNN 276 (304)
Q Consensus 203 ---~~~~~i~~~~~~~~~~~~~~e---~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~ 276 (304)
...|.|+..-. ....++. .++++....++.+.++++|.....-..+ -++.+.+.|+-=.+
T Consensus 129 gT~ikAGiIk~~~~---~~~iTp~Eek~lrAaA~A~~~Tg~Pi~tHt~~gt~g~e-----------q~~il~~egvdl~~ 194 (316)
T COG1735 129 GTGIKAGIIKEAGG---SPAITPLEEKSLRAAARAHKETGAPISTHTPAGTMGLE-----------QLRILAEEGVDLRK 194 (316)
T ss_pred CCccccceeeeccC---cccCCHHHHHHHHHHHHHhhhcCCCeEEeccchhhhHH-----------HHHHHHHcCCChhH
Confidence 12244443221 1224443 5666667777789999999865542222 46778888863347
Q ss_pred eeEEEec-cCCc
Q 022028 277 LLSAHTV-WVNH 287 (304)
Q Consensus 277 ~~~~H~~-~l~~ 287 (304)
+.+.||- +.++
T Consensus 195 v~igH~d~n~dd 206 (316)
T COG1735 195 VSIGHMDPNTDD 206 (316)
T ss_pred eeEeccCCCCCh
Confidence 8999998 4444
No 125
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=97.17 E-value=0.0041 Score=52.70 Aligned_cols=51 Identities=10% Similarity=0.131 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCC
Q 022028 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN 286 (304)
Q Consensus 221 ~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~ 286 (304)
..+.++...++|+++++++.+|+.....+ ..+.+.+.+ .+..++.|+..-+
T Consensus 106 q~~~~~~~~~~a~e~~~pv~iH~~~~~~~-------------~~~l~~~~~--~~~~~i~H~~~~~ 156 (251)
T cd01310 106 QKEVFRAQLELAKELNLPVVIHSRDAHED-------------VLEILKEYG--PPKRGVFHCFSGS 156 (251)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeeCchHH-------------HHHHHHhcC--CCCCEEEEccCCC
Confidence 34678999999999999999998755332 344555554 1245666776533
No 126
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=97.04 E-value=0.00042 Score=61.85 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=30.1
Q ss_pred CEeeccccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCC
Q 022028 76 QILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG 146 (304)
Q Consensus 76 ~iv~PG~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~ 146 (304)
.+|+|||||.|+|+.... .-..|++...+ +.++..|+||+.|+.
T Consensus 2 ~~vlPG~ID~HvH~r~pg-----------------------~~~~ed~~sgs----~AAa~GGvTtv~dmP 45 (344)
T cd01316 2 TIRLPGLIDVHVHLREPG-----------------------ATHKEDFASGT----KAALAGGFTMVRAMP 45 (344)
T ss_pred eEEeCCeEEeeeccCCCC-----------------------cCCcChHHHHH----HHHHhCCCeEEEECC
Confidence 479999999999995410 01123444433 346889999999974
No 127
>PF00449 Urease_alpha: Urease alpha-subunit, N-terminal domain; InterPro: IPR011612 Urease (urea amidohydrolase, 3.5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies [], but each holoenzyme consists of four structural domains []: three structural domains and a nickel-binding catalytic domain common to amidohydrolases []. Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organisation as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organisation (IPR008221 from INTERPRO). The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit []. ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0019627 urea metabolic process; PDB: 3LA4_A 2UBP_C 3UBP_C 1UBP_C 1S3T_C 1IE7_C 4UBP_C 1E9Y_B 1E9Z_B 3QGA_O ....
Probab=96.96 E-value=0.0024 Score=46.11 Aligned_cols=49 Identities=24% Similarity=0.454 Sum_probs=34.0
Q ss_pred CCCCCCCCCCC-cccEEEEccEEEecCCCCceeeeeeEEEeCCEEEEecCChhh
Q 022028 7 GGGSSSGSLGS-SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADI 59 (304)
Q Consensus 7 ~~~~~~~~~~~-~~~~li~~~~ii~~~~~~~~~~~~~I~I~~g~I~~i~~~~~~ 59 (304)
|+++++..... ..+++|+|+.|++. ..+ .+++|.|+||||+.|+.+..|
T Consensus 53 GMgq~~~~~~~~~lD~VItNa~IiD~---~GI-~KADIGIkdG~I~gIGkAGNP 102 (121)
T PF00449_consen 53 GMGQSSGATRDEALDLVITNALIIDY---TGI-VKADIGIKDGRIVGIGKAGNP 102 (121)
T ss_dssp TTTB-SSSGTTCC-SEEEEEEEEEET---TEE-EEEEEEEETTEEEEEE-EB-T
T ss_pred CCCcCCCCCccccccEEEeCcEEEec---CCc-EEeeEEeeCCEEEEEeccCCc
Confidence 44455444322 46789999999985 345 578999999999999998764
No 128
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=96.84 E-value=0.017 Score=49.42 Aligned_cols=55 Identities=13% Similarity=0.136 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc
Q 022028 222 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN 291 (304)
Q Consensus 222 ~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~ 291 (304)
.+.+++-+++|+++++++.+|+-....+ .++.+.+.+. +.-.+.||..-+.+...
T Consensus 113 ~~vf~~ql~lA~~~~~Pv~iH~r~a~~~-------------~~~il~~~~~--~~~~i~H~fsG~~~~a~ 167 (258)
T PRK11449 113 QWLLDEQLKLAKRYDLPVILHSRRTHDK-------------LAMHLKRHDL--PRTGVVHGFSGSLQQAE 167 (258)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCccHH-------------HHHHHHhcCC--CCCeEEEcCCCCHHHHH
Confidence 3567888999999999999998654433 3455555443 12357888777765554
No 129
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=96.77 E-value=0.028 Score=47.84 Aligned_cols=55 Identities=13% Similarity=0.121 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc
Q 022028 222 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN 291 (304)
Q Consensus 222 ~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~ 291 (304)
.+.+++-.++|+++++++.+|.-+..++ .++.|.+.+. +...+.||..=+.+...
T Consensus 111 ~~~F~~ql~lA~~~~lPviIH~R~A~~d-------------~~~iL~~~~~--~~~gi~HcFsGs~e~a~ 165 (256)
T COG0084 111 EEVFEAQLELAKELNLPVIIHTRDAHED-------------TLEILKEEGA--PVGGVLHCFSGSAEEAR 165 (256)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccHHH-------------HHHHHHhcCC--CCCEEEEccCCCHHHHH
Confidence 4467888999999999999998776554 4455555554 34567888877765554
No 130
>PRK10812 putative DNAse; Provisional
Probab=96.66 E-value=0.014 Score=50.10 Aligned_cols=56 Identities=11% Similarity=0.144 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc
Q 022028 222 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN 291 (304)
Q Consensus 222 ~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~ 291 (304)
.+.+++.+++|+++++++.+|.-....+ .++.|.+.+.-..+ .+.||..-+.+...
T Consensus 110 ~~vf~~ql~lA~e~~~Pv~iH~r~a~~~-------------~l~iL~~~~~~~~~-~v~H~fsG~~~~a~ 165 (265)
T PRK10812 110 QESFRHHIQIGRELNKPVIVHTRDARAD-------------TLAILREEKVTDCG-GVLHCFTEDRETAG 165 (265)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeeCchHH-------------HHHHHHhhcCCCCC-EEEEeecCCHHHHH
Confidence 3467888999999999999998654432 45555555442223 45899866644443
No 131
>PRK10425 DNase TatD; Provisional
Probab=96.61 E-value=0.018 Score=49.29 Aligned_cols=55 Identities=15% Similarity=0.133 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc
Q 022028 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN 291 (304)
Q Consensus 223 e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~ 291 (304)
+.+++-+++|+++++++.+|.-+...+ .++.+.+..-..++ .+.||..-+.+...
T Consensus 108 ~vF~~ql~lA~~~~~Pv~iH~r~a~~~-------------~l~iL~~~~~~~~~-~i~H~fsG~~~~~~ 162 (258)
T PRK10425 108 RAFVAQLAIAAELNMPVFMHCRDAHER-------------FMALLEPWLDKLPG-AVLHCFTGTREEMQ 162 (258)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCchHH-------------HHHHHHHhccCCCC-eEEEecCCCHHHHH
Confidence 467888999999999999998754433 34444432111123 45688877776665
No 132
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=96.44 E-value=0.012 Score=50.33 Aligned_cols=136 Identities=10% Similarity=0.049 Sum_probs=68.9
Q ss_pred HHHHhcCcceeecCCCC--CHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeE
Q 022028 132 IELIHSGVTCFAEAGGQ--HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIR 209 (304)
Q Consensus 132 ~~~l~~GvTtv~d~~~~--~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 209 (304)
..+..+|++.++..+.. ......+.+...+.+.+.+..+. |.+.....++..+...++ ..... ...+.
T Consensus 21 ~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~GiH-------P~~~~~~~~~~~~~l~~l-~~~~~--~~~~a 90 (255)
T PF01026_consen 21 ERAREAGVSAIIIVSTDPEDWERVLELASQYPDRVYPALGIH-------PWEAHEVNEEDLEELEEL-INLNR--PKVVA 90 (255)
T ss_dssp HHHHHTTEEEEEEEESSHHHHHHHHHHHHHTTTEEEEEE----------GGGGGGHSHHHHHHHHHH-HHHTS--TTEEE
T ss_pred HHHHHcCCCEEEEcCCCHHHhHHHHHHHhcCCCeEEEEecCC-------cchhhhhhHHHHHHHHHH-HHhcc--cccee
Confidence 45678899998765532 22345555566666554433221 211111112333333333 22221 11211
Q ss_pred ---EEEeeCc----ccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEe
Q 022028 210 ---IWFGIRQ----IMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHT 282 (304)
Q Consensus 210 ---~~~~~~~----~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~ 282 (304)
+++.... ....-.+.+++.+++|+++++++.+|+-....+ .++.+.+.+.-+ -..+.||
T Consensus 91 IGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a~~~-------------~l~il~~~~~~~-~~~i~H~ 156 (255)
T PF01026_consen 91 IGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRKAHEE-------------LLEILKEYGPPN-LRVIFHC 156 (255)
T ss_dssp EEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEESHHHH-------------HHHHHHHTTGGT-SEEEETT
T ss_pred eeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCCcHHH-------------HHHHHHhccccc-eeEEEec
Confidence 2233211 112234468888999999999999998653222 566677776322 2588899
Q ss_pred ccCCcchhc
Q 022028 283 VWVNHTEVN 291 (304)
Q Consensus 283 ~~l~~~di~ 291 (304)
..-+.++..
T Consensus 157 f~g~~~~~~ 165 (255)
T PF01026_consen 157 FSGSPEEAK 165 (255)
T ss_dssp --S-HHHHH
T ss_pred CCCCHHHHH
Confidence 887776655
No 133
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=96.42 E-value=0.05 Score=48.19 Aligned_cols=154 Identities=16% Similarity=0.132 Sum_probs=84.9
Q ss_pred CChHHHHHHHHHHHHHHHhcCcceee---cCCC-----CCHH--------HHHHHHHHcCCeEEeecccccCCCCCCCCc
Q 022028 118 MTEEDSYISTLLCGIELIHSGVTCFA---EAGG-----QHVS--------EMAKAVELLGLRACLVQSTMDCGEGLPASW 181 (304)
Q Consensus 118 ~~~e~~~~~~~~~~~~~l~~GvTtv~---d~~~-----~~~~--------~~~~~~~~~gir~~~~~~~~d~g~~~~~~~ 181 (304)
.++++++.-+...+..++.+|+-..- +... ...+ .+..++++.|++.-+-....-
T Consensus 78 ~~~~~~~~la~~~~~~~~~~~~vy~Ei~f~p~~~t~~~l~~~~~~e~~~~~~~~~~~~~gi~s~li~~~~r--------- 148 (345)
T COG1816 78 RTEEDFYRLAYEYLEDAAADNVVYAEIRFDPYLHTKRGLSVDTVVEGLIAGFRPAERDFGIHSKLIVCLLR--------- 148 (345)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCeEEEEEeCcchhhhccCCHHHHHHHHHHHHHHHhhccCCccceEEEEEe---------
Confidence 45677788888888999999987752 2211 1112 223334455555422111110
Q ss_pred ccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcc-cCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCC
Q 022028 182 AVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQI-MNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVD 260 (304)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~ 260 (304)
.... +...+..+....+... .++ +++..+. ....++....+++++++.|+++.+|+.|.......
T Consensus 149 -~~~~-e~~~~~~~~a~~~~~~---~~~-~~~l~~~e~~~p~~~f~~~f~~~r~~gl~lt~HaGE~~~~~~i-------- 214 (345)
T COG1816 149 -HLGF-ESADEELELALRYRDK---LVT-GVGLAGSESGYPPELFVSLFKLARDNGLKLTIHAGEAGGPESI-------- 214 (345)
T ss_pred -ecCH-HHHHHHHHHHhhcccc---cCc-cCCCCcccccCCHHHHHHHHHHHHHcCceEEEeccccCCcHHH--------
Confidence 0112 2223333333333322 221 2222222 34577888899999999999999999987654432
Q ss_pred CCHHHHHHHhCCCCCCeeEEEeccCCcchhc-------------cccccccccc
Q 022028 261 HGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN-------------CTFGNFKYAV 301 (304)
Q Consensus 261 ~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~-------------~p~sN~~l~~ 301 (304)
.+.+.-.+. + -+.||+.+-++..- ||.||..++.
T Consensus 215 ---~~al~~~~~--~--rI~HGi~~~~d~~L~~~l~~~qI~levCP~SNi~~~~ 261 (345)
T COG1816 215 ---RDALDLLGA--E--RIGHGIRAIEDPELLYRLAERQIPLEVCPLSNIQLGV 261 (345)
T ss_pred ---HHHHHHhch--h--hhccccccccCHHHHHHHHHhCCeeEECCcchhhccc
Confidence 222222222 1 37888888644322 9999987664
No 134
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=95.91 E-value=0.028 Score=49.98 Aligned_cols=153 Identities=17% Similarity=0.159 Sum_probs=86.3
Q ss_pred ChHHHHHHHHHHHHHHHhcCcceeec---------CCC-CCHH--------HHHHHHHHcCCeEEeecccccCCCCCCCC
Q 022028 119 TEEDSYISTLLCGIELIHSGVTCFAE---------AGG-QHVS--------EMAKAVELLGLRACLVQSTMDCGEGLPAS 180 (304)
Q Consensus 119 ~~e~~~~~~~~~~~~~l~~GvTtv~d---------~~~-~~~~--------~~~~~~~~~gir~~~~~~~~d~g~~~~~~ 180 (304)
++++++..+...+.++.+.||..+-- .++ ...+ .+.++.++.++..-+-....- .
T Consensus 72 ~~e~~~~~~~~~l~~~~~dnV~YlElr~~P~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~i~~~li~~~~R-~------ 144 (331)
T PF00962_consen 72 TPEDLRRYAYEVLEDFAEDNVVYLELRFSPQFHAQLGGNLSFDEVVEAIIEGIDRAEKEFGIKVRLIISVLR-H------ 144 (331)
T ss_dssp SHHHHHHHHHHHHHHHHHTTEEEEEEEESHHHHHTTTCSSTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEET-T------
T ss_pred cHHHHHHHHHHHHHHHHHcCCeEEEEEeccccccccCCCCCHHHHHHHHHhhhhhccccccccccccccccc-c------
Confidence 57777777888889999999988621 111 1111 223333445644422211111 0
Q ss_pred cccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcc-cCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCC
Q 022028 181 WAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQI-MNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV 259 (304)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~ 259 (304)
...+..++..++..++... .. +++...+. ....+..+..+++.|++.|+++.+|++|.......
T Consensus 145 ----~~~~~~~~~~~~~~~~~~~--~v--vG~dl~g~E~~~~~~~~~~~~~~a~~~gl~~t~HaGE~~~~~~~------- 209 (331)
T PF00962_consen 145 ----FPDEWAEEIVELASKYPDK--GV--VGFDLAGDEDGGPPLKFAPAFRKAREAGLKLTVHAGETGGPEHI------- 209 (331)
T ss_dssp ----STHHHHHHHHHHHHHTTTT--TE--EEEEEESSTTSTTGGGHHHHHHHHHHTT-EEEEEESSSSTHHHH-------
T ss_pred ----chHHHHHHHHHHHhhcccc--eE--EEEEecCCcccCchHHHHHHHhhhcccceeecceecccCCcccc-------
Confidence 1234445566666666542 23 34444443 33344457779999999999999999998864321
Q ss_pred CCCHHHHHHHhCCCCCCeeEEEeccCCcchh--c-----------cccccccccc
Q 022028 260 DHGTVTFLDKIEFLQNNLLSAHTVWVNHTEV--N-----------CTFGNFKYAV 301 (304)
Q Consensus 260 ~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di--~-----------~p~sN~~l~~ 301 (304)
.+.+.. |+.+ =+.||+.+..+.- + ||+||..++.
T Consensus 210 ----~~ai~~---l~~~-RIgHG~~~~~~p~l~~~~~~~~I~iEvcptSN~~~~~ 256 (331)
T PF00962_consen 210 ----RDAILL---LGAD-RIGHGVRLIKDPELLELLAERQIPIEVCPTSNVQLGA 256 (331)
T ss_dssp ----HHHHHT---ST-S-EEEE-GGGGGSHHHHHHHHHTT-EEEE-HHHHHHTTS
T ss_pred ----cchhhh---ccce-eecchhhhhhhhHHHHHHHHhCCCeeeCCCcCcccce
Confidence 122222 3422 3999999975442 1 9999999864
No 135
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=95.04 E-value=1.1 Score=38.35 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCC
Q 022028 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN 286 (304)
Q Consensus 221 ~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~ 286 (304)
+++.+..+.+.+.++|+.+.+|+..... .. ..+.+.+. +-++++.|+....
T Consensus 108 ~~~~~~~~~~~~~~~gl~v~~~~~~~~l--~~----------l~~l~~~~---~l~ivldH~G~p~ 158 (263)
T cd01311 108 NKDELDEIAKRAAELGWHVQVYFDAVDL--PA----------LLPFLQKL---PVAVVIDHFGRPD 158 (263)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEeCHhhH--HH----------HHHHHHHC---CCCEEEECCCCCC
Confidence 6677788999999999999999853221 11 23344444 3478899987654
No 136
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=94.89 E-value=0.15 Score=45.58 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=52.5
Q ss_pred EEEEeeCccc--CCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCC-CCeeEEEeccC
Q 022028 209 RIWFGIRQIM--NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQ-NNLLSAHTVWV 285 (304)
Q Consensus 209 ~~~~~~~~~~--~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~-~~~~~~H~~~l 285 (304)
.+++...+.. .-+...+..+...+.+.|+++.+|++|+...-+ .++-+.+ +|+ .| +.|++.+
T Consensus 211 VvGidL~G~e~~~~p~~~f~~vl~~~~~~gi~~t~HaGE~~~~~~-----------~v~~~LD--~l~~~R--IGHG~~l 275 (399)
T KOG1097|consen 211 VVGIDLVGQEDLGGPLSLFLEVLAKAPAKGIHLTFHAGETNGGAS-----------VVKNALD--LLGTER--IGHGYFL 275 (399)
T ss_pred EEEEecCCCCCCCCChhhhHHHHHhhhhcCCcEEEEccccCCChH-----------HHHHHHH--hhCCcc--ccCceec
Confidence 3456655543 234445666777777789999999999962222 2333333 454 34 8999999
Q ss_pred Ccch--hc-----------cccccccccc
Q 022028 286 NHTE--VN-----------CTFGNFKYAV 301 (304)
Q Consensus 286 ~~~d--i~-----------~p~sN~~l~~ 301 (304)
..++ +. ||.||.+++.
T Consensus 276 ~~dp~L~~~~k~~nI~lEiCP~SN~vl~~ 304 (399)
T KOG1097|consen 276 TKDPELINLLKSRNIALEICPISNQVLGL 304 (399)
T ss_pred cCCHHHHHHHHhcCceEEEccchhhheec
Confidence 9988 32 9999999875
No 137
>PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria.
Probab=93.66 E-value=0.021 Score=42.74 Aligned_cols=17 Identities=41% Similarity=0.958 Sum_probs=15.3
Q ss_pred CCEeeccccccCccchh
Q 022028 75 SQILLPGFVNTHVHTSQ 91 (304)
Q Consensus 75 g~iv~PG~ID~H~Hl~~ 91 (304)
|++++|||||.|+|+..
T Consensus 1 ~kli~~g~vd~hVhlre 17 (142)
T PF12890_consen 1 GKLILPGLVDVHVHLRE 17 (142)
T ss_pred Cceeehhhhhhhhhhhc
Confidence 68999999999999964
No 138
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=93.23 E-value=0.64 Score=43.47 Aligned_cols=82 Identities=10% Similarity=0.051 Sum_probs=48.2
Q ss_pred EEEEeeCccc--CCCHHHHHHHHH-HHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccC
Q 022028 209 RIWFGIRQIM--NATDRLLLETRD-MAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV 285 (304)
Q Consensus 209 ~~~~~~~~~~--~~~~e~l~~~~~-~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l 285 (304)
.+++...+.. ..+...+...+. ++++.++++.+|+.|+... |.. ..-...+.. +|+.+ =+.||+.+
T Consensus 290 vvGfDL~G~E~~g~pl~~f~~~~~~~~~~~gl~~t~HAGE~~~~--------g~~-~d~nl~dAI-lLg~~-RIGHG~~l 358 (479)
T TIGR01431 290 VAGFDLVGQEDKGRSLLDFIDALLGPSDKEKLPYFFHAGETNWQ--------GTT-VDENLIDAL-LLNTT-RIGHGFAL 358 (479)
T ss_pred EEEEeccCCCCCCCCHHHHHHHHHHHHHhCCCCEEEecCCcCCC--------CCC-chhHHHHHH-HcCCc-cccCcccc
Confidence 3456666654 334555544544 5666899999999998631 100 001111222 34432 28999999
Q ss_pred Ccchhc-------------cccccccccc
Q 022028 286 NHTEVN-------------CTFGNFKYAV 301 (304)
Q Consensus 286 ~~~di~-------------~p~sN~~l~~ 301 (304)
..+... ||.||..++.
T Consensus 359 ~~~P~l~~~vke~~I~lEvCP~SN~~l~~ 387 (479)
T TIGR01431 359 VKHPLVLQMLKERNIAVEVNPISNQVLQL 387 (479)
T ss_pred cCCHHHHHHHHHhCCeEEECccchhhhcc
Confidence 854322 9999998864
No 139
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=85.81 E-value=15 Score=33.37 Aligned_cols=105 Identities=13% Similarity=0.020 Sum_probs=59.6
Q ss_pred HHHHHHHhcCcceeecCCC----CCHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCC
Q 022028 129 LCGIELIHSGVTCFAEAGG----QHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAA 204 (304)
Q Consensus 129 ~~~~~~l~~GvTtv~d~~~----~~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (304)
..+..+.++|++.|+-|.. .+....++++++.|.+.-...+ ++. +|. ..++...++.++....+
T Consensus 102 ~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~-YT~----sPv-------Ht~e~yv~~akel~~~g 169 (472)
T COG5016 102 KFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTIS-YTT----SPV-------HTLEYYVELAKELLEMG 169 (472)
T ss_pred HHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEE-ecc----CCc-------ccHHHHHHHHHHHHHcC
Confidence 3456678999999986643 3455667888888886533222 221 221 22334455555555554
Q ss_pred CCCeEEEEeeCcccCCCHHHHHHHHHHHH-HhCCeeeEEecCChh
Q 022028 205 DGRIRIWFGIRQIMNATDRLLLETRDMAR-EFKTGIHMHVAEIPY 248 (304)
Q Consensus 205 ~~~i~~~~~~~~~~~~~~e~l~~~~~~a~-~~~~~~~~H~~E~~~ 248 (304)
.+.|.+ .-.+- -.+|....+++...+ +.++++.+|.+.+..
T Consensus 170 ~DSIci--KDmaG-lltP~~ayelVk~iK~~~~~pv~lHtH~TsG 211 (472)
T COG5016 170 VDSICI--KDMAG-LLTPYEAYELVKAIKKELPVPVELHTHATSG 211 (472)
T ss_pred CCEEEe--ecccc-cCChHHHHHHHHHHHHhcCCeeEEecccccc
Confidence 454431 11111 235554444554444 579999999988864
No 140
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=84.64 E-value=12 Score=33.43 Aligned_cols=24 Identities=4% Similarity=0.057 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHhCCeeeEEec
Q 022028 221 TDRLLLETRDMAREFKTGIHMHVA 244 (304)
Q Consensus 221 ~~e~l~~~~~~a~~~~~~~~~H~~ 244 (304)
++..+..+++.++++|+++.+|+-
T Consensus 113 dd~~l~~~~e~~~e~g~~v~vHaE 136 (341)
T TIGR00856 113 DIDAIMPVLEAMEKIGLPLLLHGE 136 (341)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeec
Confidence 346777899999999999999963
No 141
>PLN02599 dihydroorotase
Probab=79.38 E-value=29 Score=31.33 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhCCeeeEEecCC
Q 022028 222 DRLLLETRDMAREFKTGIHMHVAEI 246 (304)
Q Consensus 222 ~e~l~~~~~~a~~~~~~~~~H~~E~ 246 (304)
.+.+..+++.+++.|+++.+|. |.
T Consensus 135 ~~~l~~~le~~~e~G~~L~vH~-E~ 158 (364)
T PLN02599 135 LGKCLPVLEEMAEQGMPLLVHG-EV 158 (364)
T ss_pred HHHHHHHHHHHHhcCCEEEEec-CC
Confidence 4677778888999999999995 44
No 142
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=75.19 E-value=8.4 Score=32.79 Aligned_cols=60 Identities=12% Similarity=0.186 Sum_probs=41.2
Q ss_pred cCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCC
Q 022028 218 MNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN 286 (304)
Q Consensus 218 ~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~ 286 (304)
+..+.++++.++++|++.++++++|. |+.+.... .+ .-+++.+.|+--.+++-=|+..+.
T Consensus 140 ~~~~n~vl~~a~elA~dvdc~vqLHt-es~~~~~~-~~-------i~~~ak~~G~~~~~VVkHha~p~v 199 (285)
T COG1831 140 WEASNEVLEYAMELAKDVDCAVQLHT-ESLDEETY-EE-------IAEMAKEAGIKPYRVVKHHAPPLV 199 (285)
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEec-CCCChHHH-HH-------HHHHHHHhCCCcceeEeecCCccc
Confidence 44566778889999999999999996 55543222 21 456778889855566666665554
No 143
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=73.52 E-value=37 Score=32.84 Aligned_cols=105 Identities=13% Similarity=0.013 Sum_probs=58.8
Q ss_pred HHHHHHHhcCcceeecCCCC----CHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCC
Q 022028 129 LCGIELIHSGVTCFAEAGGQ----HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAA 204 (304)
Q Consensus 129 ~~~~~~l~~GvTtv~d~~~~----~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (304)
..+..+.++|+..++-+... .....++++++.|..+..+.+++. ++.+ ..+..++.++++. +.+
T Consensus 100 ~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~-----sp~~---t~e~~~~~ak~l~----~~G 167 (596)
T PRK14042 100 AFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTT-----SPVH---TLDNFLELGKKLA----EMG 167 (596)
T ss_pred HHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecC-----CCCC---CHHHHHHHHHHHH----HcC
Confidence 35567889999998755432 244567778889987765544443 1211 2223323333333 223
Q ss_pred CCCeEEEEeeCcccCCCHHHHHHHHHHHHH-hCCeeeEEecCChh
Q 022028 205 DGRIRIWFGIRQIMNATDRLLLETRDMARE-FKTGIHMHVAEIPY 248 (304)
Q Consensus 205 ~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~-~~~~~~~H~~E~~~ 248 (304)
.+.| .+.-. .-..+|+.+.+++...++ .++++.+|.+.+..
T Consensus 168 ad~I--~IkDt-aG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~G 209 (596)
T PRK14042 168 CDSI--AIKDM-AGLLTPTVTVELYAGLKQATGLPVHLHSHSTSG 209 (596)
T ss_pred CCEE--EeCCc-ccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCC
Confidence 3332 22211 123567777666666554 58999999987753
No 144
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=71.99 E-value=57 Score=30.55 Aligned_cols=103 Identities=15% Similarity=0.052 Sum_probs=56.5
Q ss_pred HHHHHHhcCcceeecCCCC----CHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCC
Q 022028 130 CGIELIHSGVTCFAEAGGQ----HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAAD 205 (304)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~----~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (304)
.+..+..+|+..++-+... .....++++++.|.......++.. +|.+ ..+-.++.++++. +.+.
T Consensus 110 fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~-----sp~~---t~~y~~~~a~~l~----~~Ga 177 (468)
T PRK12581 110 FISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTT-----SPVH---TLNYYLSLVKELV----EMGA 177 (468)
T ss_pred HHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEe-----CCcC---cHHHHHHHHHHHH----HcCC
Confidence 3566789999998755432 234567778888987654444433 1211 1222222233333 2233
Q ss_pred CCeEEEEeeCcccCCCHHHHHHHHHHHHH-hCCeeeEEecCCh
Q 022028 206 GRIRIWFGIRQIMNATDRLLLETRDMARE-FKTGIHMHVAEIP 247 (304)
Q Consensus 206 ~~i~~~~~~~~~~~~~~e~l~~~~~~a~~-~~~~~~~H~~E~~ 247 (304)
+.| .+.- ..-..+|+.+.++++..++ .++++.+|.+.+.
T Consensus 178 d~I--~IkD-taG~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~ 217 (468)
T PRK12581 178 DSI--CIKD-MAGILTPKAAKELVSGIKAMTNLPLIVHTHATS 217 (468)
T ss_pred CEE--EECC-CCCCcCHHHHHHHHHHHHhccCCeEEEEeCCCC
Confidence 332 2221 1123567777666666665 4689999987765
No 145
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=71.19 E-value=11 Score=29.42 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=38.3
Q ss_pred cccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceee--cCCC-CCHHHHHHHHHH
Q 022028 83 VNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFA--EAGG-QHVSEMAKAVEL 159 (304)
Q Consensus 83 ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~--d~~~-~~~~~~~~~~~~ 159 (304)
||.|+|..+|...| ..+++++. ..+.+.|.++++ |+.. .......+.+++
T Consensus 1 iDlH~HT~~s~~dg--------------------~~~~~e~v-------~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~ 53 (175)
T PF02811_consen 1 IDLHVHTKYSILDG--------------------KDSPEEYV-------EQAKEKGLDAIAITDHNNFAGYPDFYKEAKK 53 (175)
T ss_dssp EEEEB--TTTSSTS--------------------SSSHHHHH-------HHHHHTTESEEEEEEETTTTTHHHHHHHHHH
T ss_pred CCccccccCcchhh--------------------cCCHHHHH-------HHHHHcCCCEEEEcCCcccccchHHHHHHHh
Confidence 79999997752211 12344433 346678888874 5532 235566777888
Q ss_pred cCCeEEeeccc
Q 022028 160 LGLRACLVQST 170 (304)
Q Consensus 160 ~gir~~~~~~~ 170 (304)
.+++.+.|..+
T Consensus 54 ~~i~vi~G~E~ 64 (175)
T PF02811_consen 54 KGIKVIPGVEI 64 (175)
T ss_dssp TTSEEEEEEEE
T ss_pred cCCceEEeEee
Confidence 99999988876
No 146
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=66.61 E-value=12 Score=38.77 Aligned_cols=67 Identities=22% Similarity=0.347 Sum_probs=43.9
Q ss_pred eeccccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCccee--ecCCCC-CHHHHH
Q 022028 78 LLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCF--AEAGGQ-HVSEMA 154 (304)
Q Consensus 78 v~PG~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv--~d~~~~-~~~~~~ 154 (304)
++|-|+|+|+|..+|.+.| ..+++++.. .+...|...+ .|+... ......
T Consensus 1 ~~~~fv~LHvHT~ySlLdg--------------------~~~~~elv~-------~A~~~G~~avAiTDh~~l~g~~~f~ 53 (1046)
T PRK05672 1 MLPPYAELHCHSNFSFLDG--------------------ASHPEELVE-------RAARLGLRALAITDECGLAGVVRAA 53 (1046)
T ss_pred CCCceeeccccccCccccc--------------------CCCHHHHHH-------HHHHcCCCEEEEEeCCcchhHHHHH
Confidence 3678999999998865433 233555433 2445677665 355432 245667
Q ss_pred HHHHHcCCeEEeecccc
Q 022028 155 KAVELLGLRACLVQSTM 171 (304)
Q Consensus 155 ~~~~~~gir~~~~~~~~ 171 (304)
++|...|++.++|..+.
T Consensus 54 ~~~~~~gIkpI~G~Ei~ 70 (1046)
T PRK05672 54 EAAKELGLRLVIGAELS 70 (1046)
T ss_pred HHHHHCCCEEEEEEEEE
Confidence 78899999998887663
No 147
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=65.51 E-value=34 Score=22.06 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=23.5
Q ss_pred HHHhcCcceee--cCCC-CCHHHHHHHHHHcCCeEEeeccc
Q 022028 133 ELIHSGVTCFA--EAGG-QHVSEMAKAVELLGLRACLVQST 170 (304)
Q Consensus 133 ~~l~~GvTtv~--d~~~-~~~~~~~~~~~~~gir~~~~~~~ 170 (304)
.+.+.|...+. |+.. .....+.+.+++.|++.+.|.++
T Consensus 23 ~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 23 RAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred HHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 35566777764 4442 22345667777888888777654
No 148
>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]
Probab=64.85 E-value=32 Score=30.81 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCc----ccCCCHHHHHHHHHHHHHhCCeeeEE
Q 022028 185 TTDDCIQSQKELYAKHHHAADGRIRIWFGIRQ----IMNATDRLLLETRDMAREFKTGIHMH 242 (304)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~e~l~~~~~~a~~~~~~~~~H 242 (304)
..+.|++++++++..|+........+.+.|.. -...+++-++.++++++++++.+.+-
T Consensus 250 ed~~Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivD 311 (484)
T KOG1405|consen 250 EDQGCLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVD 311 (484)
T ss_pred hhhhHHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEee
Confidence 45688899999999998765555666676653 35679999999999999999887765
No 149
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=63.78 E-value=11 Score=31.06 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=12.9
Q ss_pred HHHHHHhcCcceeecCC
Q 022028 130 CGIELIHSGVTCFAEAG 146 (304)
Q Consensus 130 ~~~~~l~~GvTtv~d~~ 146 (304)
-++++.+.|||++...+
T Consensus 25 ml~~A~~qGvt~iVaTs 41 (254)
T COG4464 25 MLREAVRQGVTKIVATS 41 (254)
T ss_pred HHHHHHHcCceEEeecc
Confidence 45678899999997543
No 150
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=59.97 E-value=1.2e+02 Score=26.35 Aligned_cols=49 Identities=8% Similarity=0.021 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccC
Q 022028 223 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV 285 (304)
Q Consensus 223 e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l 285 (304)
+.+++.++..+++|..+.+++.-..-.. .+..+.+.- +-++++-||-..
T Consensus 124 ~~~r~~~~rL~~~gl~fdl~~~~~ql~~------------~i~l~~~~P--d~~~VldH~G~p 172 (279)
T COG3618 124 PAWRANVERLAKLGLHFDLQVDPHQLPD------------LIPLALKAP--DVNFVLDHCGRP 172 (279)
T ss_pred HHHHHHHHHHHhcCCeEEEEeChhhhHH------------HHHHHhhCC--CCCEEeccCCCC
Confidence 5788888889999999998874211100 233333331 237899999888
No 151
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=59.22 E-value=23 Score=36.01 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=41.4
Q ss_pred ccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCccee--ecCCC-CCHHHHHHHHH
Q 022028 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCF--AEAGG-QHVSEMAKAVE 158 (304)
Q Consensus 82 ~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv--~d~~~-~~~~~~~~~~~ 158 (304)
|+|+|+|..+|.+.| ..+++++.. .+...|...+ .|+.. .......++|.
T Consensus 3 Fv~LH~HS~ySlLdg--------------------~~~~~elv~-------~A~~~G~~aiAiTDh~~~~g~~~f~~~~~ 55 (874)
T PRK09532 3 FVGLHIHSDYSLLDG--------------------ASQLPALVD-------RAIELGMPAIALTDHGVMYGAIELLKVCR 55 (874)
T ss_pred ccccccCCcCchhhc--------------------cCCHHHHHH-------HHHHCCCCEEEEecCCChhhHHHHHHHHH
Confidence 999999998876544 233445433 2445677665 35553 23456778888
Q ss_pred HcCCeEEeeccc
Q 022028 159 LLGLRACLVQST 170 (304)
Q Consensus 159 ~~gir~~~~~~~ 170 (304)
..|++.++|..+
T Consensus 56 ~~gik~I~G~E~ 67 (874)
T PRK09532 56 NKGIKPIIGNEM 67 (874)
T ss_pred HcCCeEEEEEEE
Confidence 999999888765
No 152
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=56.01 E-value=39 Score=25.39 Aligned_cols=80 Identities=18% Similarity=0.124 Sum_probs=45.4
Q ss_pred CceEEeCCCCEeeccccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceeecCC
Q 022028 67 ADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG 146 (304)
Q Consensus 67 ~~~vID~~g~iv~PG~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~ 146 (304)
.+-.+|+ ...|.|-+||.|.|..+-..+.-.... ..+ --+|.-.+.-+.++-..|||.+....
T Consensus 6 ~~~~fdl-dytiwP~~vdthl~~pfkP~k~~~g~~-----------g~e-----~~fY~Di~rIL~dLk~~GVtl~~ASR 68 (144)
T KOG4549|consen 6 EAMQFDL-DYTIWPRLVDTHLDYPFKPFKCECGSK-----------GEE-----MIFYDDIRRILVDLKKLGVTLIHASR 68 (144)
T ss_pred ceeEEec-cceeeeEEEEecccccccccccCcccC-----------cce-----eeeccchhHHHHHHHhcCcEEEEecC
Confidence 3467787 568999999999998764433211000 000 01233344455666678998886655
Q ss_pred CCCHHHHHHHHHHcCCe
Q 022028 147 GQHVSEMAKAVELLGLR 163 (304)
Q Consensus 147 ~~~~~~~~~~~~~~gir 163 (304)
+...+-..+..+...+.
T Consensus 69 t~ap~iA~q~L~~fkvk 85 (144)
T KOG4549|consen 69 TMAPQIASQGLETFKVK 85 (144)
T ss_pred CCCHHHHHHHHHHhccC
Confidence 44444444554544443
No 153
>PRK08185 hypothetical protein; Provisional
Probab=55.83 E-value=87 Score=27.23 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=27.4
Q ss_pred EEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChh
Q 022028 210 IWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 248 (304)
Q Consensus 210 ~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~ 248 (304)
+.+++........+....+.+.|++..+++.+|+++..+
T Consensus 42 l~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~lHLDHg~~ 80 (283)
T PRK08185 42 IAIHPNELDFLGDNFFAYVRERAKRSPVPFVIHLDHGAT 80 (283)
T ss_pred EEeCcchhhhccHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 344443332234556667788899999999999998875
No 154
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=54.33 E-value=1.6e+02 Score=28.01 Aligned_cols=103 Identities=15% Similarity=0.093 Sum_probs=54.9
Q ss_pred HHHHHHhcCcceeecCCCC----CHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCC
Q 022028 130 CGIELIHSGVTCFAEAGGQ----HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAAD 205 (304)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~----~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (304)
.+..+..+|+..++-+... .....++++++.|.......+++. . +.+ ..+..++.++++. +.+.
T Consensus 102 fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~-s----p~~---t~e~~~~~a~~l~----~~Ga 169 (499)
T PRK12330 102 FVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTV-S----PIH---TVEGFVEQAKRLL----DMGA 169 (499)
T ss_pred HHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEec-C----CCC---CHHHHHHHHHHHH----HcCC
Confidence 4556788899997644322 234567777888887633332221 1 111 2223323333333 3333
Q ss_pred CCeEEEEeeCcccCCCHHHHHHHHHHHHH-h--CCeeeEEecCCh
Q 022028 206 GRIRIWFGIRQIMNATDRLLLETRDMARE-F--KTGIHMHVAEIP 247 (304)
Q Consensus 206 ~~i~~~~~~~~~~~~~~e~l~~~~~~a~~-~--~~~~~~H~~E~~ 247 (304)
+.|. +.- ..-..+|+...+++...++ . ++++.+|.+.+.
T Consensus 170 d~I~--IkD-taGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~ 211 (499)
T PRK12330 170 DSIC--IKD-MAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTT 211 (499)
T ss_pred CEEE--eCC-CccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCC
Confidence 3332 221 1123577777777666665 4 699999988765
No 155
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=54.30 E-value=29 Score=35.67 Aligned_cols=63 Identities=8% Similarity=0.094 Sum_probs=42.2
Q ss_pred ccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceee--cCCC-CCHHHHHHHHH
Q 022028 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFA--EAGG-QHVSEMAKAVE 158 (304)
Q Consensus 82 ~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~--d~~~-~~~~~~~~~~~ 158 (304)
|+|+|+|..+|.+.| ..+++++... +...|..+++ |+.. .......+++.
T Consensus 3 fv~LHvHS~ySlLDg--------------------~~~~~elv~~-------Ak~~G~~avAITDh~~l~G~~~f~~~a~ 55 (973)
T PRK07135 3 LINLHTNTEYSFLSS--------------------TIKLDSLIKY-------AKENNLKTLVLTDHNNMFGVPKFYKLCK 55 (973)
T ss_pred ccccccCccCccccc--------------------CCCHHHHHHH-------HHHcCCCEEEEecCCcHHhHHHHHHHHH
Confidence 899999998865433 2445554433 4566777764 5543 23456678889
Q ss_pred HcCCeEEeecccc
Q 022028 159 LLGLRACLVQSTM 171 (304)
Q Consensus 159 ~~gir~~~~~~~~ 171 (304)
+.|++.++|..+.
T Consensus 56 ~~gIkpIiG~Ei~ 68 (973)
T PRK07135 56 KNNIKPIIGLDLE 68 (973)
T ss_pred HcCCeEEEeEEEE
Confidence 9999998887764
No 156
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=53.69 E-value=1.4e+02 Score=25.36 Aligned_cols=111 Identities=9% Similarity=0.033 Sum_probs=54.7
Q ss_pred HHHHHHhcCcceeecCC-----------CCCHHHHHHHHHHcCCeEEeecccccCCCCCCCCcc---cCChHHHHHHHHH
Q 022028 130 CGIELIHSGVTCFAEAG-----------GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWA---VRTTDDCIQSQKE 195 (304)
Q Consensus 130 ~~~~~l~~GvTtv~d~~-----------~~~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~---~~~~~~~~~~~~~ 195 (304)
.+..+.+.|.+.+--.. ....+.+.+..++.|+.......... + .+.... .......++...+
T Consensus 18 ~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~-~--~~~~~~~~~~~~r~~~~~~~~~ 94 (275)
T PRK09856 18 AFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETN-G--YPYNMMLGDEHMRRESLDMIKL 94 (275)
T ss_pred HHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCccc-C--cCccccCCCHHHHHHHHHHHHH
Confidence 34456677888763211 01245667778889998643211110 1 111110 0012233344444
Q ss_pred HHHHHcCCCCCCeEEEEeeCcccCCC-------HHHHHHHHHHHHHhCCeeeEEe
Q 022028 196 LYAKHHHAADGRIRIWFGIRQIMNAT-------DRLLLETRDMAREFKTGIHMHV 243 (304)
Q Consensus 196 ~~~~~~~~~~~~i~~~~~~~~~~~~~-------~e~l~~~~~~a~~~~~~~~~H~ 243 (304)
.++.....+...+.+.....+..... -+.++.+.++|+++|+.+.+|-
T Consensus 95 ~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 95 AMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 44444444444443322211111111 2247889999999999999985
No 157
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=53.27 E-value=3e+02 Score=29.22 Aligned_cols=110 Identities=13% Similarity=-0.029 Sum_probs=57.6
Q ss_pred HHHHHHHhcCcceeecCCCC----CHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCC
Q 022028 129 LCGIELIHSGVTCFAEAGGQ----HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAA 204 (304)
Q Consensus 129 ~~~~~~l~~GvTtv~d~~~~----~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (304)
..+..+.++|+..++-+... ++...++++++.|...-.+.++.. .-..+.......+..++.+.++ .+.+
T Consensus 629 ~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~--~~~d~~~~~~~l~y~~~~ak~l----~~~G 702 (1143)
T TIGR01235 629 YFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTG--DILDPARPKYDLKYYTNLAVEL----EKAG 702 (1143)
T ss_pred HHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEec--cCCCcCCCCCCHHHHHHHHHHH----HHcC
Confidence 35567789999998766542 345567777888886644444431 1011111111122222223333 2333
Q ss_pred CCCeEEEEeeCcccCCCHHHHHHHHHHHHH-hCCeeeEEecCCh
Q 022028 205 DGRIRIWFGIRQIMNATDRLLLETRDMARE-FKTGIHMHVAEIP 247 (304)
Q Consensus 205 ~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~-~~~~~~~H~~E~~ 247 (304)
.+.+ .+.-. .-..+|..+..+++..++ .++++++|.+.+.
T Consensus 703 ad~I--~ikDt-~Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~ 743 (1143)
T TIGR01235 703 AHIL--GIKDM-AGLLKPAAAKLLIKALREKTDLPIHFHTHDTS 743 (1143)
T ss_pred CCEE--EECCC-cCCcCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 3332 22211 123466666666655554 5899999998775
No 158
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=48.41 E-value=37 Score=35.66 Aligned_cols=63 Identities=22% Similarity=0.286 Sum_probs=41.5
Q ss_pred cccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceee--cCCCC-CHHHHHHHH
Q 022028 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFA--EAGGQ-HVSEMAKAV 157 (304)
Q Consensus 81 G~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~--d~~~~-~~~~~~~~~ 157 (304)
.||++|+|..+|.+.| ..+++++.. .+...|...++ |+... ......++|
T Consensus 1 ~fv~LHvHS~ySlLdg--------------------~~~i~elv~-------~A~e~G~~avAiTDH~~l~g~~~f~~~a 53 (1135)
T PRK05673 1 RFVHLHVHSEYSLLDG--------------------AAKIKPLVK-------KAAELGMPAVALTDHGNLFGAVEFYKAA 53 (1135)
T ss_pred CcccceecccCchhhh--------------------cCCHHHHHH-------HHHHcCCCEEEEEcCCccHHHHHHHHHH
Confidence 3899999998875543 233444333 34567887764 55432 244667888
Q ss_pred HHcCCeEEeeccc
Q 022028 158 ELLGLRACLVQST 170 (304)
Q Consensus 158 ~~~gir~~~~~~~ 170 (304)
.+.|+..++|..+
T Consensus 54 ~~~gIkpIiG~Ei 66 (1135)
T PRK05673 54 KGAGIKPIIGCEA 66 (1135)
T ss_pred HHcCCeEEEEEEE
Confidence 8999999888765
No 159
>PRK13404 dihydropyrimidinase; Provisional
Probab=47.91 E-value=28 Score=32.73 Aligned_cols=60 Identities=7% Similarity=-0.007 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHHhCCee-eEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhcc
Q 022028 221 TDRLLLETRDMAREFKTGI-HMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVNC 292 (304)
Q Consensus 221 ~~e~l~~~~~~a~~~~~~~-~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~~ 292 (304)
..+.+.++.++|++.|+++ ..|++ +....+ .+..+++.|+.----++.|...|+++++..
T Consensus 219 E~~~v~~~~~la~~~g~~~hi~Hvs-~~~~~~-----------~i~~~k~~g~~vt~e~~ph~L~l~~~~~~~ 279 (477)
T PRK13404 219 EREATHRAIALAELVDVPILIVHVS-GREAAE-----------QIRRARGRGLKIFAETCPQYLFLTAEDLDR 279 (477)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECC-CHHHHH-----------HHHHHHHCCCeEEEEEChhhhccCHHHhcC
Confidence 3346778999999999998 55776 444333 344455566532234678999999988753
No 160
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=47.85 E-value=42 Score=35.38 Aligned_cols=62 Identities=19% Similarity=0.215 Sum_probs=41.1
Q ss_pred ccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceee--cCCC-CCHHHHHHHHH
Q 022028 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFA--EAGG-QHVSEMAKAVE 158 (304)
Q Consensus 82 ~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~--d~~~-~~~~~~~~~~~ 158 (304)
|+|+|+|..+|.+.| ..+++++.. .+...|..+++ |++. .......++|.
T Consensus 3 fv~LHvHS~ySlLdg--------------------~~~i~elv~-------~A~~~G~~alAiTDh~~l~G~~~f~~~~~ 55 (1170)
T PRK07374 3 FVPLHNHSDYSLLDG--------------------ASQLPKMVE-------RAKELGMPAIALTDHGVMYGAIELLKLCK 55 (1170)
T ss_pred cccccccCcCchhhc--------------------cCCHHHHHH-------HHHHCCCCEEEEecCCchHHHHHHHHHHH
Confidence 999999998876544 233444333 34566777764 5543 22456678889
Q ss_pred HcCCeEEeeccc
Q 022028 159 LLGLRACLVQST 170 (304)
Q Consensus 159 ~~gir~~~~~~~ 170 (304)
+.|++.++|..+
T Consensus 56 ~~gIkpIiG~E~ 67 (1170)
T PRK07374 56 GKGIKPIIGNEM 67 (1170)
T ss_pred HcCCeEEEEeEE
Confidence 999999888765
No 161
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.79 E-value=41 Score=34.91 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=40.5
Q ss_pred ccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceee--cCCC-CCHHHHHHHHH
Q 022028 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFA--EAGG-QHVSEMAKAVE 158 (304)
Q Consensus 82 ~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~--d~~~-~~~~~~~~~~~ 158 (304)
|||+|+|..+|.+.| ..+++++.. .+...|...++ |+.. .......++|.
T Consensus 1 fv~LHvHS~yS~Ldg--------------------~~~~~elv~-------~A~~~G~~alAiTDH~~l~g~~~f~~~~~ 53 (1022)
T TIGR00594 1 FVHLHVHSDYSLLDG--------------------AAKIKPLVK-------KAKELGMPALALTDHGNMFGAVEFYKACK 53 (1022)
T ss_pred CeeeeecccCccccc--------------------cCCHHHHHH-------HHHHCCCCEEEEecCCCchhHHHHHHHHH
Confidence 789999998865433 233455433 34566777764 5443 22446677888
Q ss_pred HcCCeEEeeccc
Q 022028 159 LLGLRACLVQST 170 (304)
Q Consensus 159 ~~gir~~~~~~~ 170 (304)
+.|++.++|..+
T Consensus 54 ~~gIkpI~G~Ei 65 (1022)
T TIGR00594 54 KAGIKPIIGCEA 65 (1022)
T ss_pred HcCCeEEEEEEE
Confidence 899999888765
No 162
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=45.97 E-value=2e+02 Score=27.96 Aligned_cols=103 Identities=13% Similarity=0.045 Sum_probs=53.1
Q ss_pred HHHHHHhcCcceeecCCCC----CHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCC
Q 022028 130 CGIELIHSGVTCFAEAGGQ----HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAAD 205 (304)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~----~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (304)
.+..+..+|+..++-+... .....++.+++.|.....+..+.. .+.+ ..+.+. ++.+...+.+.
T Consensus 102 ~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~-----~p~~----~~~~~~---~~a~~l~~~Ga 169 (593)
T PRK14040 102 FVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTT-----SPVH----TLQTWV---DLAKQLEDMGV 169 (593)
T ss_pred HHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEee-----CCcc----CHHHHH---HHHHHHHHcCC
Confidence 4556788999988644321 233566777888887533333322 1111 122222 22323222233
Q ss_pred CCeEEEEeeCcccCCCHHHHHHHHHHHHH-hCCeeeEEecCCh
Q 022028 206 GRIRIWFGIRQIMNATDRLLLETRDMARE-FKTGIHMHVAEIP 247 (304)
Q Consensus 206 ~~i~~~~~~~~~~~~~~e~l~~~~~~a~~-~~~~~~~H~~E~~ 247 (304)
+.+ .+.-. .-..+|+.+..+++..++ .++++.+|.+.+.
T Consensus 170 d~i--~i~Dt-~G~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~ 209 (593)
T PRK14040 170 DSL--CIKDM-AGLLKPYAAYELVSRIKKRVDVPLHLHCHATT 209 (593)
T ss_pred CEE--EECCC-CCCcCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 332 22211 123466666666555554 6899999987665
No 163
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=45.82 E-value=1.3e+02 Score=27.00 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHH
Q 022028 150 VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETR 229 (304)
Q Consensus 150 ~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~ 229 (304)
...+.++|++.|+-.-+|....+....+-..| ...++..++.+.+.++.+...+-+.+.+.+.. +..+..+++-+
T Consensus 120 ~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky-~~t~~amvesA~~~~~~le~~~f~~iviSlKs----Sdv~~~i~ayr 194 (359)
T PF04551_consen 120 VKEVVEAAKERGIPIRIGVNSGSLEKDILEKY-GPTPEAMVESALEHVRILEELGFDDIVISLKS----SDVPETIEAYR 194 (359)
T ss_dssp HHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHH-CHHHHHHHHHHHHHHHHHHHCT-GGEEEEEEB----SSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEecccccCcHHHHhhc-cchHHHHHHHHHHHHHHHHHCCCCcEEEEEEe----CChHHHHHHHH
Confidence 34678888888887766644322110000011 23445556666666666655544445544432 33455678888
Q ss_pred HHHHHhCCeeeEEecCChhhH
Q 022028 230 DMAREFKTGIHMHVAEIPYEN 250 (304)
Q Consensus 230 ~~a~~~~~~~~~H~~E~~~~~ 250 (304)
.++++.+.|+|+-+.|.....
T Consensus 195 ~la~~~dyPLHLGvTEAG~~~ 215 (359)
T PF04551_consen 195 LLAERMDYPLHLGVTEAGTGE 215 (359)
T ss_dssp HHHHH--S-EEEEBSSEESCH
T ss_pred HHHHhcCCCeEEeecCCCCcc
Confidence 899999999888888755443
No 164
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=45.55 E-value=1.6e+02 Score=24.93 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhCCe-eeEEe
Q 022028 225 LLETRDMAREFKTG-IHMHV 243 (304)
Q Consensus 225 l~~~~~~a~~~~~~-~~~H~ 243 (304)
++..+++|++.|.+ +.+|.
T Consensus 86 l~~~i~~A~~lGa~~vv~h~ 105 (273)
T smart00518 86 LIDEIKRCEELGIKALVFHP 105 (273)
T ss_pred HHHHHHHHHHcCCCEEEEcc
Confidence 55577777777764 45555
No 165
>PRK01060 endonuclease IV; Provisional
Probab=45.52 E-value=1.7e+02 Score=25.00 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhCCe-eeEEec
Q 022028 224 LLLETRDMAREFKTG-IHMHVA 244 (304)
Q Consensus 224 ~l~~~~~~a~~~~~~-~~~H~~ 244 (304)
.++..+++|++.|.+ +.+|..
T Consensus 90 ~~~~~i~~A~~lga~~vv~h~G 111 (281)
T PRK01060 90 FLIQEIERCAALGAKLLVFHPG 111 (281)
T ss_pred HHHHHHHHHHHcCCCEEEEcCC
Confidence 466677888888875 556765
No 166
>cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring. AMPD is a diverse and highly regulated eukaryotic key enzyme of the adenylate catabolic pathway.
Probab=44.22 E-value=32 Score=32.41 Aligned_cols=57 Identities=12% Similarity=0.115 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhC---CeeeEEecCChhhHHHHHHhcCCCCCHHHHHH-HhCCCCCCeeEEEeccCCcchhc---------
Q 022028 225 LLETRDMAREFK---TGIHMHVAEIPYENQVVMDTRKVDHGTVTFLD-KIEFLQNNLLSAHTVWVNHTEVN--------- 291 (304)
Q Consensus 225 l~~~~~~a~~~~---~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~-~~g~l~~~~~~~H~~~l~~~di~--------- 291 (304)
+..+=.+.+++| ..+..|++|.... +++. .. ++.++ +.||+.+.++...
T Consensus 312 i~~LN~~R~~rglntf~~r~HaGE~g~~---------------~~l~~al-L~adR--IGHGv~l~~dp~L~~l~~~~qI 373 (496)
T cd01319 312 ITTLNSFRKARGFNTFVLRPHCGEAGDI---------------DHLASAF-LLAHG--ISHGINLRKVPVLQYLYYLTQI 373 (496)
T ss_pred HHHHHHHHHHcCCCCcceeeecCCCCCh---------------HHHHHHh-hcCcc--cccccccCCCHHHHHHHHHcCC
Confidence 344455555655 4889999987542 2221 11 22334 8999999765443
Q ss_pred ----cccccccc
Q 022028 292 ----CTFGNFKY 299 (304)
Q Consensus 292 ----~p~sN~~l 299 (304)
||.||..+
T Consensus 374 ~levCPlSN~~l 385 (496)
T cd01319 374 GIAMSPLSNNSL 385 (496)
T ss_pred eEEEecCccHhh
Confidence 99999754
No 167
>PRK06740 histidinol-phosphatase; Validated
Probab=43.69 E-value=2.4e+02 Score=25.14 Aligned_cols=70 Identities=11% Similarity=0.095 Sum_probs=37.7
Q ss_pred ccccCccchhhhhhcccCCCCccccccccccCccC-------CCChHHHHHHHHHHHHHHHhcCcceeecCCCCCHHHHH
Q 022028 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYES-------NMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMA 154 (304)
Q Consensus 82 ~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~-------~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~ 154 (304)
.||-|+|+.... -...|+.+....... .-+- +....+...+.+-+..|.-+. ..++.++
T Consensus 2 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~e~yv 67 (331)
T PRK06740 2 KVDYHIHLEEGP--------YSIGWLAKINEALQHYEPLKEAKHSM-EWLVKTQERLQRRVKEGPYTT-----KWIDLYL 67 (331)
T ss_pred cceeEEeeccCc--------cchhHHHHhhhhhhccCccccccchH-HHHHHHHHHHHHHHhcCCCcc-----chHHHHH
Confidence 589999997732 334566543221111 1111 222223334555556554331 3367888
Q ss_pred HHHHHcCCeEE
Q 022028 155 KAVELLGLRAC 165 (304)
Q Consensus 155 ~~~~~~gir~~ 165 (304)
+++.+.|+..+
T Consensus 68 ~~Ai~~G~~~i 78 (331)
T PRK06740 68 EEALRKGIKEV 78 (331)
T ss_pred HHHHHCCCcEE
Confidence 88888988764
No 168
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=43.55 E-value=2.5e+02 Score=25.30 Aligned_cols=113 Identities=15% Similarity=0.185 Sum_probs=66.6
Q ss_pred HHHHhcCcceee-cCCC-----CCHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCC
Q 022028 132 IELIHSGVTCFA-EAGG-----QHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAAD 205 (304)
Q Consensus 132 ~~~l~~GvTtv~-d~~~-----~~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (304)
.+++.+|+-.++ +.+. .....+.+++++.++-.-+|....+....+-..|....++..++.+.+.++-+.+.+-
T Consensus 95 l~a~~~G~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f 174 (360)
T PRK00366 95 LAAAEAGADALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGF 174 (360)
T ss_pred HHHHHhCCCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 346788998886 2221 1245678888888877766643322111111122223556666666666666655443
Q ss_pred CCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChh
Q 022028 206 GRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 248 (304)
Q Consensus 206 ~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~ 248 (304)
..+++.+- .+..+.++++-+.++++.+.++|+=+.|...
T Consensus 175 ~~iviS~K----sS~v~~~i~ayrlla~~~dyPLHlGvTEAG~ 213 (360)
T PRK00366 175 DDIKISVK----ASDVQDLIAAYRLLAKRCDYPLHLGVTEAGM 213 (360)
T ss_pred CcEEEEEE----cCCHHHHHHHHHHHHhcCCCCceecccCCCC
Confidence 44554443 2345667888888888888887777766543
No 169
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=42.92 E-value=2.1e+02 Score=26.95 Aligned_cols=103 Identities=11% Similarity=0.014 Sum_probs=52.7
Q ss_pred HHHHHHhcCcceeecCCCC----CHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCC
Q 022028 130 CGIELIHSGVTCFAEAGGQ----HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAAD 205 (304)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~----~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (304)
.+..++.+|+..++-+.+. .....++.+++.|.....+..+. .+ +.+ ..+..++.++++ .+.+.
T Consensus 100 fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t-~~----p~~---t~e~~~~~a~~l----~~~Ga 167 (467)
T PRK14041 100 FVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYT-VS----PVH---TLEYYLEFAREL----VDMGV 167 (467)
T ss_pred HHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEec-cC----CCC---CHHHHHHHHHHH----HHcCC
Confidence 3455678899887644322 23345667778887654332222 11 111 122222233333 23333
Q ss_pred CCeEEEEeeCcccCCCHHHHHHHHHHHHH-hCCeeeEEecCCh
Q 022028 206 GRIRIWFGIRQIMNATDRLLLETRDMARE-FKTGIHMHVAEIP 247 (304)
Q Consensus 206 ~~i~~~~~~~~~~~~~~e~l~~~~~~a~~-~~~~~~~H~~E~~ 247 (304)
+.| .+.-. .-..+|..+.+++...++ .++++.+|.+.+.
T Consensus 168 d~I--~i~Dt-~G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~ 207 (467)
T PRK14041 168 DSI--CIKDM-AGLLTPKRAYELVKALKKKFGVPVEVHSHCTT 207 (467)
T ss_pred CEE--EECCc-cCCcCHHHHHHHHHHHHHhcCCceEEEecCCC
Confidence 332 22211 122467766666666554 5899999988765
No 170
>TIGR01429 AMP_deaminase AMP deaminase. This model describes AMP deaminase, a large, well-conserved eukaryotic protein involved in energy metabolism. Most members of the family have an additional, poorly alignable region of 150 amino acids or more N-terminal to the region included in the model.
Probab=42.14 E-value=38 Score=32.74 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCe---eeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhc----------
Q 022028 225 LLETRDMAREFKTG---IHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVN---------- 291 (304)
Q Consensus 225 l~~~~~~a~~~~~~---~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~---------- 291 (304)
+..+=.+.+++|+. +..|++|.... +++.+.=+..++ +.||+.+.++...
T Consensus 424 l~~LN~~R~~rGLnt~~LrpHaGEag~~---------------e~l~~A~L~adR--IgHGi~l~~dp~L~yl~~~~qI~ 486 (611)
T TIGR01429 424 IMVLNNFRRERGLNTFLLRPHCGEAGSV---------------DHLVSAFLTSHG--INHGILLRKVPVLQYLYYLTQIP 486 (611)
T ss_pred HHHHHHHHHHcCCCccceeecCCCCCCH---------------HHHHHHhhcCcc--cccceecCCCHHHHHHHHHcCCe
Confidence 44455666667766 88999986532 222221022334 7999999654433
Q ss_pred ---ccccccc
Q 022028 292 ---CTFGNFK 298 (304)
Q Consensus 292 ---~p~sN~~ 298 (304)
||.||..
T Consensus 487 LevCPtSN~~ 496 (611)
T TIGR01429 487 IAMSPLSNNS 496 (611)
T ss_pred EEEcCCcchh
Confidence 9999974
No 171
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=42.05 E-value=39 Score=29.61 Aligned_cols=57 Identities=18% Similarity=0.135 Sum_probs=36.7
Q ss_pred cCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcc
Q 022028 218 MNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHT 288 (304)
Q Consensus 218 ~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~ 288 (304)
.-.+++.+..+..+|+++|+++.+--+ ||.--..+-+-+-.-+-+++ ++||..||--
T Consensus 194 NVlTdeE~~kldalA~~~giPliIDnA------------Yg~PFP~iifsd~~~~w~~N--iilC~SLSK~ 250 (417)
T COG3977 194 NVLTDEELAKLDALARQHGIPLIIDNA------------YGVPFPGIIFSDATPLWNEN--IILCMSLSKL 250 (417)
T ss_pred CcccHHHHHHHHHHhhhcCCcEEEecc------------cCCCCCceecccccccCCCC--EEEEeehhhc
Confidence 346888999999999999999998743 44311112222222334455 7788888753
No 172
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=40.64 E-value=2e+02 Score=23.53 Aligned_cols=75 Identities=16% Similarity=0.085 Sum_probs=41.6
Q ss_pred HHHHHHHcCCC-CCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEe--cCChhhHHHHHHhcCCCCCHHHHHHHh
Q 022028 194 KELYAKHHHAA-DGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHV--AEIPYENQVVMDTRKVDHGTVTFLDKI 270 (304)
Q Consensus 194 ~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~--~E~~~~~~~~~~~~g~~~~~~~~l~~~ 270 (304)
.+.++.+...+ +|.+-..+.+. .+.+.+.++.+.+.|+ ++++..|- ++..+..+ .++.|.++
T Consensus 75 ~~dI~~~~~~GadG~VfG~L~~d--g~iD~~~~~~Li~~a~--~~~~tFHRAfD~~~d~~~-----------al~~L~~l 139 (201)
T PF03932_consen 75 KEDIRMLRELGADGFVFGALTED--GEIDEEALEELIEAAG--GMPVTFHRAFDEVPDPEE-----------ALEQLIEL 139 (201)
T ss_dssp HHHHHHHHHTT-SEEEE--BETT--SSB-HHHHHHHHHHHT--TSEEEE-GGGGGSSTHHH-----------HHHHHHHH
T ss_pred HHHHHHHHHcCCCeeEEEeECCC--CCcCHHHHHHHHHhcC--CCeEEEeCcHHHhCCHHH-----------HHHHHHhc
Confidence 33344443333 34333334443 3468888998888886 88999993 45555333 46667777
Q ss_pred CCCCCCeeEEEeccCC
Q 022028 271 EFLQNNLLSAHTVWVN 286 (304)
Q Consensus 271 g~l~~~~~~~H~~~l~ 286 (304)
|+ .-++.++...+
T Consensus 140 G~---~rVLTSGg~~~ 152 (201)
T PF03932_consen 140 GF---DRVLTSGGAPT 152 (201)
T ss_dssp T----SEEEESTTSSS
T ss_pred CC---CEEECCCCCCC
Confidence 76 44666666544
No 173
>PLN02727 NAD kinase
Probab=39.80 E-value=2.9e+02 Score=28.45 Aligned_cols=40 Identities=10% Similarity=0.108 Sum_probs=28.9
Q ss_pred cCCCHHHHHHHHHHH-HHhCCeeeEEecCChhhHHHHHHhc
Q 022028 218 MNATDRLLLETRDMA-REFKTGIHMHVAEIPYENQVVMDTR 257 (304)
Q Consensus 218 ~~~~~e~l~~~~~~a-~~~~~~~~~H~~E~~~~~~~~~~~~ 257 (304)
...+++.+++.+++. .....++.+|+..+.+..-.....|
T Consensus 322 ~apt~EqVe~fa~~l~~slpkPVLvHCKSGarRAGamvA~y 362 (986)
T PLN02727 322 TAPSAEQVEKFASLVSDSSKKPIYLHSKEGVWRTSAMVSRW 362 (986)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCEEEECCCCCchHHHHHHHH
Confidence 445788888888888 5578999999988876555554443
No 174
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=38.62 E-value=2.5e+02 Score=27.32 Aligned_cols=103 Identities=15% Similarity=0.113 Sum_probs=53.5
Q ss_pred HHHHHHhcCcceeecCCC----CCHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCC
Q 022028 130 CGIELIHSGVTCFAEAGG----QHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAAD 205 (304)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~----~~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (304)
.+..++.+|+..++-+.. .......+.+++.|.....+..+.. . + + ...+..++..+++. +.+.
T Consensus 96 ~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~-~----p-~--~~~~~~~~~~~~~~----~~Ga 163 (582)
T TIGR01108 96 FVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTT-S----P-V--HTLETYLDLAEELL----EMGV 163 (582)
T ss_pred HHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEecc-C----C-C--CCHHHHHHHHHHHH----HcCC
Confidence 345577889988754422 1234456677888887654433322 1 1 1 12223323333333 2233
Q ss_pred CCeEEEEeeCcccCCCHHHHHHHHHHHHH-hCCeeeEEecCCh
Q 022028 206 GRIRIWFGIRQIMNATDRLLLETRDMARE-FKTGIHMHVAEIP 247 (304)
Q Consensus 206 ~~i~~~~~~~~~~~~~~e~l~~~~~~a~~-~~~~~~~H~~E~~ 247 (304)
+.| .+.-. .-..+|+.+.++++..++ .++++.+|.+.+.
T Consensus 164 d~I--~i~Dt-~G~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~ 203 (582)
T TIGR01108 164 DSI--CIKDM-AGILTPKAAYELVSALKKRFGLPVHLHSHATT 203 (582)
T ss_pred CEE--EECCC-CCCcCHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 332 22211 123467766666665554 5889999988765
No 175
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=38.28 E-value=2.7e+02 Score=24.26 Aligned_cols=109 Identities=9% Similarity=0.005 Sum_probs=52.2
Q ss_pred HHHHHhcCcceee-cCCCCCHH-------HHHHHHHHcCCeEE--eecccccCCCCCCCCcccCChHHHHHHHHHHHHHH
Q 022028 131 GIELIHSGVTCFA-EAGGQHVS-------EMAKAVELLGLRAC--LVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKH 200 (304)
Q Consensus 131 ~~~~l~~GvTtv~-d~~~~~~~-------~~~~~~~~~gir~~--~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (304)
+.++++.|.|+|. |-+....+ .+.+.+...|+-.= +|..-..+. +..... ....-...+++.+++++-
T Consensus 90 i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed-~~~~~~-~~~~~T~peea~~Fv~~T 167 (286)
T PRK12738 90 IRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVED-DMSVDA-ESAFLTDPQEAKRFVELT 167 (286)
T ss_pred HHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccC-Cccccc-chhcCCCHHHHHHHHHHh
Confidence 3457788999986 43332222 34555566666431 222111110 000000 000001123455555442
Q ss_pred cCCCCCCeEEEEe-eCcccCCCHH-HHHHHHHHHHHhCCeeeEEec
Q 022028 201 HHAADGRIRIWFG-IRQIMNATDR-LLLETRDMAREFKTGIHMHVA 244 (304)
Q Consensus 201 ~~~~~~~i~~~~~-~~~~~~~~~e-~l~~~~~~a~~~~~~~~~H~~ 244 (304)
+-+.+.+.++ .|+.+...|. .++.+.++.+..++|+.+|=.
T Consensus 168 ---gvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLHGg 210 (286)
T PRK12738 168 ---GVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGA 210 (286)
T ss_pred ---CCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEeCC
Confidence 3355555553 4566544344 355566667777999999943
No 176
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=38.12 E-value=69 Score=33.80 Aligned_cols=63 Identities=25% Similarity=0.325 Sum_probs=40.2
Q ss_pred ccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceee--cCCCC-CHHHHHHHHH
Q 022028 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFA--EAGGQ-HVSEMAKAVE 158 (304)
Q Consensus 82 ~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~--d~~~~-~~~~~~~~~~ 158 (304)
|+|+|+|..+|.+.| ..+++++.. .+...|...++ |+... ......+.|.
T Consensus 5 fvdLHvHT~yS~ldg--------------------~~~~~elv~-------~A~e~G~~avAITDH~~~~g~~~f~~~a~ 57 (1151)
T PRK06826 5 FVHLHVHTEYSLLDG--------------------SARIKDLIK-------RAKELGMDSIAITDHGVMYGVVDFYKAAK 57 (1151)
T ss_pred ceeccccccCChhhh--------------------cCCHHHHHH-------HHHHCCCCEEEEecCCchHhHHHHHHHHH
Confidence 999999998865432 223444332 34566777764 55432 2345677888
Q ss_pred HcCCeEEeecccc
Q 022028 159 LLGLRACLVQSTM 171 (304)
Q Consensus 159 ~~gir~~~~~~~~ 171 (304)
+.|+..++|..+.
T Consensus 58 ~~gIkpIiG~Ei~ 70 (1151)
T PRK06826 58 KQGIKPIIGCEVY 70 (1151)
T ss_pred hCCCEEEEEEEEE
Confidence 8899988887653
No 177
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=38.06 E-value=2.6e+02 Score=23.94 Aligned_cols=76 Identities=11% Similarity=0.016 Sum_probs=52.3
Q ss_pred CcccCCC-HHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhc-----CCC-CCHHHHHHHhCCCCCCeeEEEeccCCc
Q 022028 215 RQIMNAT-DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTR-----KVD-HGTVTFLDKIEFLQNNLLSAHTVWVNH 287 (304)
Q Consensus 215 ~~~~~~~-~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~-----g~~-~~~~~~l~~~g~l~~~~~~~H~~~l~~ 287 (304)
.+....- ++-++-+.++.+++|+++...+.+... .+.+.+.- |.. .+-.++|...|-.+.-+++-.+.+++.
T Consensus 51 ~sFqG~G~eeGL~iL~~vk~~~glpvvTeV~~~~~-~~~vae~vDilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~ 129 (258)
T TIGR01362 51 HSFRGPGLEEGLKILQKVKEEFGVPILTDVHESSQ-CEPVAEVVDIIQIPAFLCRQTDLLVAAAKTGRIVNVKKGQFLSP 129 (258)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCceEEEeCCHHH-HHHHHhhCcEEEeCchhcchHHHHHHHhccCCeEEecCCCcCCH
Confidence 3344556 678998999999999999999987654 44443311 110 124677777777766677888888888
Q ss_pred chhc
Q 022028 288 TEVN 291 (304)
Q Consensus 288 ~di~ 291 (304)
+|+.
T Consensus 130 ~e~l 133 (258)
T TIGR01362 130 WDMK 133 (258)
T ss_pred HHHH
Confidence 8875
No 178
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=37.09 E-value=56 Score=29.16 Aligned_cols=48 Identities=13% Similarity=0.032 Sum_probs=33.0
Q ss_pred ChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhcccccccc
Q 022028 246 IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVNCTFGNFK 298 (304)
Q Consensus 246 ~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~~p~sN~~ 298 (304)
+.++++...+.|+. ..+.+.+.|+-+=.+.+.|+.-+ ..+-+|.+|.+
T Consensus 133 t~eeI~~ii~~f~~---aA~~a~~aGfDgVeih~ahGyLl--~qFlSp~~N~R 180 (337)
T PRK13523 133 TKEQIKETVLAFKQ---AAVRAKEAGFDVIEIHGAHGYLI--NEFLSPLSNKR 180 (337)
T ss_pred CHHHHHHHHHHHHH---HHHHHHHcCCCEEEEccccchHH--HHhcCCccCCc
Confidence 34667777777775 67888888995545556665544 36778888765
No 179
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=36.84 E-value=3.1e+02 Score=24.51 Aligned_cols=112 Identities=14% Similarity=0.081 Sum_probs=66.2
Q ss_pred HHHhcCcceee-cCC---C-CCHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCC
Q 022028 133 ELIHSGVTCFA-EAG---G-QHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGR 207 (304)
Q Consensus 133 ~~l~~GvTtv~-d~~---~-~~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (304)
.++.+|+-.++ +.+ . .....+.+++++.++-.-+|....+....+-..|....++..++.+.+.++-+.+.+-..
T Consensus 88 ~a~~~g~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~d 167 (346)
T TIGR00612 88 LAMAKGVAKVRINPGNIGFRERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRN 167 (346)
T ss_pred HHHHhccCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCc
Confidence 35677888886 222 2 134577888898887766654332211111112222455666666666666665544344
Q ss_pred eEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChh
Q 022028 208 IRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 248 (304)
Q Consensus 208 i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~ 248 (304)
+++.+- .+..+.++++-+.++++.+.|+|+=+.|...
T Consensus 168 iviS~K----sSdv~~~i~ayr~la~~~dyPLHlGVTEAG~ 204 (346)
T TIGR00612 168 VVLSMK----ASDVAETVAAYRLLAERSDYPLHLGVTEAGM 204 (346)
T ss_pred EEEEEE----cCCHHHHHHHHHHHHhhCCCCceeccccCCC
Confidence 554443 2345667888888888888888777776553
No 180
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]
Probab=35.54 E-value=59 Score=34.10 Aligned_cols=64 Identities=22% Similarity=0.265 Sum_probs=42.8
Q ss_pred eccccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCcceee--cCCC-CCHHHHHH
Q 022028 79 LPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFA--EAGG-QHVSEMAK 155 (304)
Q Consensus 79 ~PG~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~--d~~~-~~~~~~~~ 155 (304)
.|.||.+|+|..+|.+.|. .+.+++.. .+...|..+++ |... .......+
T Consensus 1 ~~~fv~Lh~hS~YS~Ldga--------------------~~i~~Lv~-------~A~~~g~~AlaiTD~~nl~Gav~Fy~ 53 (1139)
T COG0587 1 EMSFVHLHVHSEYSLLDGA--------------------SKIEELVK-------KAKELGMPALALTDHNNLYGAVEFYK 53 (1139)
T ss_pred CCceeecccccccchhccc--------------------cCHHHHHH-------HHHHcCCCeEEEecCCcceeHHHHHH
Confidence 4789999999999876552 22333332 34455666653 5543 23556777
Q ss_pred HHHHcCCeEEeecc
Q 022028 156 AVELLGLRACLVQS 169 (304)
Q Consensus 156 ~~~~~gir~~~~~~ 169 (304)
+|+..|++.++|..
T Consensus 54 ~ak~~gikpIiG~e 67 (1139)
T COG0587 54 AAKKAGIKPIIGCE 67 (1139)
T ss_pred HHHHcCCeEEeeeE
Confidence 89999999998876
No 181
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=34.83 E-value=2.7e+02 Score=24.22 Aligned_cols=109 Identities=7% Similarity=0.057 Sum_probs=52.3
Q ss_pred HHHHHhcCcceee-cCCCCCH-------HHHHHHHHHcCCeEE--eecccccCCCCCCCCcccCChHHHHHHHHHHHHHH
Q 022028 131 GIELIHSGVTCFA-EAGGQHV-------SEMAKAVELLGLRAC--LVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKH 200 (304)
Q Consensus 131 ~~~~l~~GvTtv~-d~~~~~~-------~~~~~~~~~~gir~~--~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (304)
+.++++.|.|+|. |-+.... ..+.+.+...|+-.= +|..-..+. +.... .....-...+++.+++++-
T Consensus 90 i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~-~~~~~-~~~~~~T~peeA~~Fv~~T 167 (284)
T PRK12737 90 IKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQED-DLVVD-EKDAMYTNPDAAAEFVERT 167 (284)
T ss_pred HHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccC-Ccccc-cccccCCCHHHHHHHHHHh
Confidence 4567899999985 4443222 234555666666441 222111110 00000 0000011224455666543
Q ss_pred cCCCCCCeEEEEe-eCcccCCCHH-HHHHHHHHHHHhCCeeeEEec
Q 022028 201 HHAADGRIRIWFG-IRQIMNATDR-LLLETRDMAREFKTGIHMHVA 244 (304)
Q Consensus 201 ~~~~~~~i~~~~~-~~~~~~~~~e-~l~~~~~~a~~~~~~~~~H~~ 244 (304)
+-+.+.+.++ .|+.+...+. .++.+.++.+..++++.+|=.
T Consensus 168 ---gvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGg 210 (284)
T PRK12737 168 ---GIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGA 210 (284)
T ss_pred ---CCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCC
Confidence 3355555554 2565543332 344555666667999999943
No 182
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=34.77 E-value=3.1e+02 Score=26.69 Aligned_cols=103 Identities=15% Similarity=0.037 Sum_probs=54.4
Q ss_pred HHHHHHhcCcceeecCCCC----CHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCC
Q 022028 130 CGIELIHSGVTCFAEAGGQ----HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAAD 205 (304)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~----~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (304)
.+..++++|+..++-+... ......+.+++.|.....+..+.. .+ .+ ..+..++.++++. +.+.
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~-~p----~~---t~~~~~~~a~~l~----~~Ga 168 (592)
T PRK09282 101 FVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTT-SP----VH---TIEKYVELAKELE----EMGC 168 (592)
T ss_pred HHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEecc-CC----CC---CHHHHHHHHHHHH----HcCC
Confidence 3455678899887644322 233456667788887654433322 11 11 2333333333333 2232
Q ss_pred CCeEEEEeeCcccCCCHHHHHHHHHHHHH-hCCeeeEEecCCh
Q 022028 206 GRIRIWFGIRQIMNATDRLLLETRDMARE-FKTGIHMHVAEIP 247 (304)
Q Consensus 206 ~~i~~~~~~~~~~~~~~e~l~~~~~~a~~-~~~~~~~H~~E~~ 247 (304)
+.| .+.-. .-..+|+.+.++++..++ .++++.+|.+.+.
T Consensus 169 d~I--~i~Dt-~G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~ 208 (592)
T PRK09282 169 DSI--CIKDM-AGLLTPYAAYELVKALKEEVDLPVQLHSHCTS 208 (592)
T ss_pred CEE--EECCc-CCCcCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 332 22211 123567777776666654 5889999987665
No 183
>PRK08392 hypothetical protein; Provisional
Probab=33.54 E-value=2.7e+02 Score=22.82 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhCCeeeEEe
Q 022028 222 DRLLLETRDMAREFKTGIHMHV 243 (304)
Q Consensus 222 ~e~l~~~~~~a~~~~~~~~~H~ 243 (304)
.+.++++++.++++|+.+-+-.
T Consensus 136 ~~~~~~i~~~~~~~g~~lEiNt 157 (215)
T PRK08392 136 EEELKEILDLAEAYGKAFEISS 157 (215)
T ss_pred HHHHHHHHHHHHHhCCEEEEeC
Confidence 4567778888888887766543
No 184
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=33.39 E-value=2.2e+02 Score=24.79 Aligned_cols=45 Identities=13% Similarity=0.060 Sum_probs=28.4
Q ss_pred EEEeeCcccCCCH-HHHHHHHHHHHHhCCeeeEEecCChhhHHHHHH
Q 022028 210 IWFGIRQIMNATD-RLLLETRDMAREFKTGIHMHVAEIPYENQVVMD 255 (304)
Q Consensus 210 ~~~~~~~~~~~~~-e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~ 255 (304)
+.+++........ .....+.++|++..+++.+|+++..+ .+.+++
T Consensus 47 iq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDHg~~-~e~i~~ 92 (284)
T PRK09195 47 IAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDHHEK-FDDIAQ 92 (284)
T ss_pred EEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC-HHHHHH
Confidence 3444433322333 34555777888899999999998864 444444
No 185
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=33.33 E-value=2.2e+02 Score=24.70 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhCCeeeEEe
Q 022028 224 LLLETRDMAREFKTGIHMHV 243 (304)
Q Consensus 224 ~l~~~~~~a~~~~~~~~~H~ 243 (304)
.++++-++++++|+++.+|-
T Consensus 88 ~l~~iG~~~~~~~iRls~HP 107 (275)
T PF03851_consen 88 ELAEIGDLAKENGIRLSMHP 107 (275)
T ss_dssp HHHHHHHHHHHTT-EEEE--
T ss_pred HHHHHHHHHHHcCCeEEecC
Confidence 35556666666666666663
No 186
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=32.81 E-value=3.3e+02 Score=23.66 Aligned_cols=112 Identities=12% Similarity=0.030 Sum_probs=52.8
Q ss_pred HHHHHhcCcceee-cCCCCCHH-------HHHHHHHHcCCeE--EeecccccCCCCCCCCcccCChHHHHHHHHHHHHHH
Q 022028 131 GIELIHSGVTCFA-EAGGQHVS-------EMAKAVELLGLRA--CLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKH 200 (304)
Q Consensus 131 ~~~~l~~GvTtv~-d~~~~~~~-------~~~~~~~~~gir~--~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (304)
+.++++.|+|+|. |-+....+ .+.+.+...|+-. =+|..-..+. +.... .....-...+++.+++++-
T Consensus 88 i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~-~~~~~-~~~~~~T~peea~~Fv~~T 165 (282)
T TIGR01858 88 IRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVED-DLSVD-EEDALYTDPQEAKEFVEAT 165 (282)
T ss_pred HHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccC-CCccc-cchhccCCHHHHHHHHHHH
Confidence 4567899999986 44332222 3445556666643 1222111110 00000 0000011123445555432
Q ss_pred cCCCCCCeEEEEee-CcccCCCHH-HHHHHHHHHHHhCCeeeEEecCCh
Q 022028 201 HHAADGRIRIWFGI-RQIMNATDR-LLLETRDMAREFKTGIHMHVAEIP 247 (304)
Q Consensus 201 ~~~~~~~i~~~~~~-~~~~~~~~e-~l~~~~~~a~~~~~~~~~H~~E~~ 247 (304)
+-+.+.+.++. |+.+...+. .++.+.++.++.++|+.+|=.-+.
T Consensus 166 ---gvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~ 211 (282)
T TIGR01858 166 ---GVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDV 211 (282)
T ss_pred ---CcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCC
Confidence 33555555543 555543333 245555666677999999954333
No 187
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=32.47 E-value=1.9e+02 Score=26.26 Aligned_cols=59 Identities=8% Similarity=0.035 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCCCCCCeEEEEeeCc--ccCCCHHHHHHHHHHHHHhCCeeeEEecCCh
Q 022028 189 CIQSQKELYAKHHHAADGRIRIWFGIRQ--IMNATDRLLLETRDMAREFKTGIHMHVAEIP 247 (304)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~ 247 (304)
.++..++++++....+...|...++-.+ -.-+|-+.++++.++|+++++++.+-.+--.
T Consensus 170 D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~Rfa 230 (471)
T COG3033 170 DLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFA 230 (471)
T ss_pred CHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhh
Confidence 3455677777765433333433333222 2446788899999999999999999865433
No 188
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=32.06 E-value=2.5e+02 Score=24.47 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=25.4
Q ss_pred EEEeeCcccCCCHHHH-HHHHHHHHHhCCeeeEEecCChh
Q 022028 210 IWFGIRQIMNATDRLL-LETRDMAREFKTGIHMHVAEIPY 248 (304)
Q Consensus 210 ~~~~~~~~~~~~~e~l-~~~~~~a~~~~~~~~~H~~E~~~ 248 (304)
+.+++........+.+ ..+...|++..+++.+|+++..+
T Consensus 47 iq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLDH~~~ 86 (284)
T PRK12737 47 LAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLDHHED 86 (284)
T ss_pred EEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 3444433322333433 44677888899999999998875
No 189
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=31.39 E-value=3.5e+02 Score=23.53 Aligned_cols=56 Identities=13% Similarity=0.066 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEeeCccc-CCCHHHHHHHHHHHHHhCCeeeEEecCChh
Q 022028 188 DCIQSQKELYAKHHHAADGRIRIWFGIRQIM-NATDRLLLETRDMAREFKTGIHMHVAEIPY 248 (304)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~ 248 (304)
...++.++.+++. +.+.+.+.+.... .-.+..+..+.+.|.++|+++.+|...+..
T Consensus 113 ~a~~E~er~v~~~-----gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~ 169 (293)
T COG2159 113 AAAEELERRVREL-----GFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPG 169 (293)
T ss_pred HHHHHHHHHHHhc-----CceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 3444555555542 3444455444332 224444777999999999999999877554
No 190
>PRK05898 dnaE DNA polymerase III DnaE; Validated
Probab=31.11 E-value=1.1e+02 Score=31.50 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=42.0
Q ss_pred ccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCccee--ecCCC-CCHHHHHHHHH
Q 022028 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCF--AEAGG-QHVSEMAKAVE 158 (304)
Q Consensus 82 ~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv--~d~~~-~~~~~~~~~~~ 158 (304)
|+.+|+|..+|.+.| ..+++++... +...|..++ .|++. .......++|+
T Consensus 2 fvhLh~hS~YSlLdg--------------------~~~~~~lv~~-------A~e~g~~alALTD~~nl~GaveF~~~ak 54 (971)
T PRK05898 2 FINLNTHSHYSLLSS--------------------TLSIDDIIKF-------ALDNNQPYVCLTDLNNLYGCIEFYDKAK 54 (971)
T ss_pred eeeeecCCccccccc--------------------cCCHHHHHHH-------HHHCCCCEEEEEeCCccccHHHHHHHHH
Confidence 688999998877654 2234444332 345566665 35543 34667889999
Q ss_pred HcCCeEEeecccc
Q 022028 159 LLGLRACLVQSTM 171 (304)
Q Consensus 159 ~~gir~~~~~~~~ 171 (304)
+.|++.++|..+.
T Consensus 55 ~~gIkPIiG~e~~ 67 (971)
T PRK05898 55 AHNLIPIIGLEIE 67 (971)
T ss_pred HcCCCEEEEEEEE
Confidence 9999999887653
No 191
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=30.72 E-value=2.9e+02 Score=23.98 Aligned_cols=45 Identities=4% Similarity=0.007 Sum_probs=27.9
Q ss_pred EEEeeCcccCCCHH-HHHHHHHHHHHhCCeeeEEecCChhhHHHHHH
Q 022028 210 IWFGIRQIMNATDR-LLLETRDMAREFKTGIHMHVAEIPYENQVVMD 255 (304)
Q Consensus 210 ~~~~~~~~~~~~~e-~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~ 255 (304)
+.+++.......-+ ....+...|++..+|+.+|+++..+ .+.+++
T Consensus 45 lq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~-~e~i~~ 90 (282)
T TIGR01858 45 LAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDHHES-LDDIRQ 90 (282)
T ss_pred EEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC-HHHHHH
Confidence 34444333223334 4455667788889999999998875 344443
No 192
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=30.58 E-value=55 Score=18.89 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=13.0
Q ss_pred eeEEEeCCEEEEecCCh
Q 022028 41 GGVFVVQDRIKAIGQSA 57 (304)
Q Consensus 41 ~~I~I~~g~I~~i~~~~ 57 (304)
-.|.|.||+|+.|...+
T Consensus 18 V~iiiqdG~vvQIe~~E 34 (38)
T PF10055_consen 18 VTIIIQDGRVVQIEKTE 34 (38)
T ss_pred EEEEEECCEEEEEEhhh
Confidence 35777899999987643
No 193
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=30.32 E-value=2.1e+02 Score=23.49 Aligned_cols=25 Identities=16% Similarity=0.005 Sum_probs=11.0
Q ss_pred HHHHHHHhCC-eeeEEecCChhhHHH
Q 022028 228 TRDMAREFKT-GIHMHVAEIPYENQV 252 (304)
Q Consensus 228 ~~~~a~~~~~-~~~~H~~E~~~~~~~ 252 (304)
+.+++++.++ .+++|=.|+....+.
T Consensus 67 i~~~~~~~~~d~vQLHG~e~~~~~~~ 92 (207)
T PRK13958 67 IEHILSNTSINTIQLHGTESIDFIQE 92 (207)
T ss_pred HHHHHHhCCCCEEEECCCCCHHHHHH
Confidence 3344444442 345554454443333
No 194
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=29.98 E-value=3.5e+02 Score=23.02 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhCCeeeEEec
Q 022028 223 RLLLETRDMAREFKTGIHMHVA 244 (304)
Q Consensus 223 e~l~~~~~~a~~~~~~~~~H~~ 244 (304)
+.++++.++|+++|+.+.+|..
T Consensus 133 ~~l~~l~~~A~~~Gv~l~lE~~ 154 (279)
T TIGR00542 133 EGLKEAVELAARAQVTLAVEIM 154 (279)
T ss_pred HHHHHHHHHHHHcCCEEEEeeC
Confidence 4577889999999999999964
No 195
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=29.81 E-value=3.1e+02 Score=23.90 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=29.4
Q ss_pred EEEeeCcccCCC--HHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHH
Q 022028 210 IWFGIRQIMNAT--DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD 255 (304)
Q Consensus 210 ~~~~~~~~~~~~--~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~ 255 (304)
+.+++....... .....-+..+|+++++||.+|+++... .+.|.+
T Consensus 47 iq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg~~-~~~~~~ 93 (286)
T COG0191 47 IQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDHGAS-FEDCKQ 93 (286)
T ss_pred EEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECCCCCC-HHHHHH
Confidence 344444432233 445566788889999999999998864 444444
No 196
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=29.20 E-value=2.7e+02 Score=23.15 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHhCCeeeEEecCChhhHH
Q 022028 220 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQ 251 (304)
Q Consensus 220 ~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~ 251 (304)
.+.+.++.+.+.|+++|+.+.+-+-...+..+
T Consensus 90 A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~ 121 (217)
T COG0269 90 ADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQ 121 (217)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeecCCCHHH
Confidence 46778999999999999999988876664433
No 197
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=29.12 E-value=72 Score=27.05 Aligned_cols=45 Identities=7% Similarity=-0.006 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCC
Q 022028 222 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEF 272 (304)
Q Consensus 222 ~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~ 272 (304)
+..+++.++.|++.|.. .+-++.+.-+...-.+. +.++...+.|+
T Consensus 83 q~~~~~yl~~~k~lGf~-~IEiSdGti~l~~~~r~-----~~I~~~~~~Gf 127 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFD-AIEISDGTIDLPEEERL-----RLIRKAKEEGF 127 (244)
T ss_dssp TT-HHHHHHHHHHCT-S-EEEE--SSS---HHHHH-----HHHHHHCCTTS
T ss_pred cChHHHHHHHHHHcCCC-EEEecCCceeCCHHHHH-----HHHHHHHHCCC
Confidence 34566677777777765 34565554333222221 14566666665
No 198
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=28.71 E-value=2.6e+02 Score=24.33 Aligned_cols=31 Identities=3% Similarity=0.070 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhCCeeeEEecCChhhHHHHHH
Q 022028 224 LLLETRDMAREFKTGIHMHVAEIPYENQVVMD 255 (304)
Q Consensus 224 ~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~ 255 (304)
....+..+|++..+++.+|+++..+ .+.+++
T Consensus 62 ~~~~~~~~a~~~~VPValHLDHg~~-~e~i~~ 92 (286)
T PRK12738 62 IYALCSAYSTTYNMPLALHLDHHES-LDDIRR 92 (286)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCC-HHHHHH
Confidence 4455677788899999999998875 444444
No 199
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=28.62 E-value=3.9e+02 Score=23.25 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=25.4
Q ss_pred EEEeeCcccCCCHHHH-HHHHHHHHHhCCeeeEEecCChh
Q 022028 210 IWFGIRQIMNATDRLL-LETRDMAREFKTGIHMHVAEIPY 248 (304)
Q Consensus 210 ~~~~~~~~~~~~~e~l-~~~~~~a~~~~~~~~~H~~E~~~ 248 (304)
+.+++.......-+.+ ..+...|++..+++.+|+++..+
T Consensus 47 lq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH~~~ 86 (284)
T PRK12857 47 IQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDHGTD 86 (284)
T ss_pred EEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 3444433322333434 44777888899999999999874
No 200
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=28.46 E-value=53 Score=24.88 Aligned_cols=14 Identities=14% Similarity=0.238 Sum_probs=12.8
Q ss_pred eeeEEEeCCEEEEe
Q 022028 40 NGGVFVVQDRIKAI 53 (304)
Q Consensus 40 ~~~I~I~~g~I~~i 53 (304)
+..|+|+||+|++|
T Consensus 117 ~~EIvvkDG~V~eI 130 (131)
T PF11068_consen 117 GVEIVVKDGKVIEI 130 (131)
T ss_dssp TEEEEEETTEEEEE
T ss_pred CcEEEEECCEEEEe
Confidence 67899999999987
No 201
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=28.37 E-value=4e+02 Score=23.22 Aligned_cols=52 Identities=8% Similarity=0.116 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEEe-eCcccCCCHH--HHHHHHHHHHHhCCeeeEEecCC
Q 022028 192 SQKELYAKHHHAADGRIRIWFG-IRQIMNATDR--LLLETRDMAREFKTGIHMHVAEI 246 (304)
Q Consensus 192 ~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~e--~l~~~~~~a~~~~~~~~~H~~E~ 246 (304)
++.+++++ .+.+.+.+.++ .|+.+...+. .++.+.++.+..++++.+|=.-+
T Consensus 162 ea~~Fv~~---TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG 216 (288)
T TIGR00167 162 EAKEFVKL---TGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLHGGSG 216 (288)
T ss_pred HHHHHHhc---cCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCC
Confidence 44455443 33455555553 4555543333 34555566666799999995433
No 202
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=28.27 E-value=3.9e+02 Score=22.99 Aligned_cols=75 Identities=8% Similarity=-0.011 Sum_probs=51.7
Q ss_pred cccCCC-HHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhc-----CCC-CCHHHHHHHhCCCCCCeeEEEeccCCcc
Q 022028 216 QIMNAT-DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTR-----KVD-HGTVTFLDKIEFLQNNLLSAHTVWVNHT 288 (304)
Q Consensus 216 ~~~~~~-~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~-----g~~-~~~~~~l~~~g~l~~~~~~~H~~~l~~~ 288 (304)
+....- ++=++-+.++.+++|+++...+.+... .+.+.+.- |.. .+-.++|...|-.+.-+++-.+.+++.+
T Consensus 60 sFqG~G~eeGL~~L~~vk~~~GlpvvTeV~~~~~-~~~v~~~~DilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~ 138 (264)
T PRK05198 60 SFRGPGLEEGLKILQEVKETFGVPVLTDVHEPEQ-AAPVAEVVDVLQIPAFLCRQTDLLVAAAKTGKVVNIKKGQFLAPW 138 (264)
T ss_pred CCCCCChHHHHHHHHHHHHHHCCceEEEeCCHHH-HHHHHhhCcEEEECchhcchHHHHHHHhccCCeEEecCCCcCCHH
Confidence 344456 678998889999999999999987654 44444311 100 1245777777776666778888888888
Q ss_pred hhc
Q 022028 289 EVN 291 (304)
Q Consensus 289 di~ 291 (304)
|+.
T Consensus 139 e~~ 141 (264)
T PRK05198 139 DMK 141 (264)
T ss_pred HHH
Confidence 875
No 203
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=28.24 E-value=1.3e+02 Score=25.15 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=20.0
Q ss_pred cCCCHHHHHHHHHHHHHhCCeeeEEec
Q 022028 218 MNATDRLLLETRDMAREFKTGIHMHVA 244 (304)
Q Consensus 218 ~~~~~e~l~~~~~~a~~~~~~~~~H~~ 244 (304)
...++...+.+.++|.++|+++.+|+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~pv~~H~g 138 (273)
T PF04909_consen 112 DPDDPRLDDPIFEAAEELGLPVLIHTG 138 (273)
T ss_dssp CTTSGHCHHHHHHHHHHHT-EEEEEES
T ss_pred ccccHHHHHHHHHHHHhhccceeeecc
Confidence 344444445899999999999999975
No 204
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=27.84 E-value=1e+02 Score=27.57 Aligned_cols=47 Identities=6% Similarity=0.015 Sum_probs=28.6
Q ss_pred ChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhccccccc
Q 022028 246 IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVNCTFGNF 297 (304)
Q Consensus 246 ~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~~p~sN~ 297 (304)
+.++++...+.|.. .++.+.+.|+-+=.+...|+..|+ .+-||.+|.
T Consensus 128 t~~eI~~i~~~f~~---aA~~a~~aGfDgVeih~ahGyLl~--qFlsp~~N~ 174 (353)
T cd02930 128 SEEEIEQTIEDFAR---CAALAREAGYDGVEIMGSEGYLIN--QFLAPRTNK 174 (353)
T ss_pred CHHHHHHHHHHHHH---HHHHHHHcCCCEEEEecccchHHH--HhcCCccCC
Confidence 33566666666664 567777888854344455554443 566777764
No 205
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.45 E-value=1.8e+02 Score=25.72 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhCCeeeEEecC
Q 022028 223 RLLLETRDMAREFKTGIHMHVAE 245 (304)
Q Consensus 223 e~l~~~~~~a~~~~~~~~~H~~E 245 (304)
+.++++-++|+++|+++.+|...
T Consensus 94 ~~l~~iG~~a~~~~iRLS~Hp~q 116 (312)
T TIGR00629 94 KELREIGELAKTHQHRLTFHPGQ 116 (312)
T ss_pred HHHHHHHHHHHHcCeEEEECCCc
Confidence 45667888888888888888543
No 206
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=27.15 E-value=5.2e+02 Score=24.16 Aligned_cols=103 Identities=15% Similarity=0.082 Sum_probs=54.4
Q ss_pred HHHHHHhcCcceeecCCC----CCHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCC
Q 022028 130 CGIELIHSGVTCFAEAGG----QHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAAD 205 (304)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~----~~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (304)
.+..++.+|+..++-+.. ......++.+++.|........+.+ ++. ...+..++.++++. +.+.
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~-~p~-------~~~~~~~~~a~~l~----~~Ga 168 (448)
T PRK12331 101 FVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTT-SPV-------HTIDYFVKLAKEMQ----EMGA 168 (448)
T ss_pred HHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeec-CCC-------CCHHHHHHHHHHHH----HcCC
Confidence 345567889988754332 1244567777888887544433332 111 12223323333333 3333
Q ss_pred CCeEEEEeeCcccCCCHHHHHHHHHHHHH-hCCeeeEEecCCh
Q 022028 206 GRIRIWFGIRQIMNATDRLLLETRDMARE-FKTGIHMHVAEIP 247 (304)
Q Consensus 206 ~~i~~~~~~~~~~~~~~e~l~~~~~~a~~-~~~~~~~H~~E~~ 247 (304)
+.|. +.- ..-..+|+.+.++++..++ .++++.+|.+.+.
T Consensus 169 d~I~--i~D-t~G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~ 208 (448)
T PRK12331 169 DSIC--IKD-MAGILTPYVAYELVKRIKEAVTVPLEVHTHATS 208 (448)
T ss_pred CEEE--EcC-CCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 3332 221 1123467777666666554 5899999988765
No 207
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=27.14 E-value=1.3e+02 Score=27.91 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhCCeeeE-EecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCee---EEEeccCCcchhc
Q 022028 222 DRLLLETRDMAREFKTGIHM-HVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLL---SAHTVWVNHTEVN 291 (304)
Q Consensus 222 ~e~l~~~~~~a~~~~~~~~~-H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~---~~H~~~l~~~di~ 291 (304)
.+.+..+.++|++.++++++ |++ +....+ .++.+.+.|+ +++ +.|...++++++.
T Consensus 215 ~~~~~~~~~la~~~g~~vhi~His-s~~~~~-----------~i~~~~~~g~---~it~e~~ph~l~l~~~~~~ 273 (443)
T TIGR03178 215 VEAIRRTLALAKVTGCRVHVVHLS-SAEAVE-----------LITEAKQEGL---DVTVETCPHYLTLTAEEVP 273 (443)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCC-CHHHHH-----------HHHHHHHCCC---cEEEEECccceEecHHHhh
Confidence 34678889999999988744 654 222222 3444455565 344 5888899988874
No 208
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=27.12 E-value=1.1e+02 Score=27.39 Aligned_cols=48 Identities=8% Similarity=-0.037 Sum_probs=31.0
Q ss_pred ChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhcccccccc
Q 022028 246 IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVNCTFGNFK 298 (304)
Q Consensus 246 ~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~~p~sN~~ 298 (304)
+.++++...+.|.. ....+.+.|+-+=.+.+.|++-| +.+-+|.+|.+
T Consensus 132 t~~eI~~ii~~f~~---AA~ra~~aGfDgVeih~ahGyLl--~qFlsp~~N~R 179 (343)
T cd04734 132 EEEDIEEIIAAFAD---AARRCQAGGLDGVELQAAHGHLI--DQFLSPLTNRR 179 (343)
T ss_pred CHHHHHHHHHHHHH---HHHHHHHcCCCEEEEccccchHH--HHhhCCCcCCC
Confidence 34566666666654 56777888885545566666654 45667777765
No 209
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=27.01 E-value=1.7e+02 Score=26.01 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCC-C--------CCHHHHHHHhCCC
Q 022028 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV-D--------HGTVTFLDKIEFL 273 (304)
Q Consensus 221 ~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~-~--------~~~~~~l~~~g~l 273 (304)
.++.++++.+.|+++|+++.+=++.+.-+.+... +||. + ..-+++++++||-
T Consensus 108 ~~~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~-ky~~pt~ealveSAl~~a~~~e~l~f~ 168 (361)
T COG0821 108 FKDRVREVVEAAKDKGIPIRIGVNAGSLEKRLLE-KYGGPTPEALVESALEHAELLEELGFD 168 (361)
T ss_pred cHHHHHHHHHHHHHcCCCEEEecccCchhHHHHH-HhcCCCHHHHHHHHHHHHHHHHHCCCC
Confidence 4557999999999999999999988877665544 4542 2 1125567788874
No 210
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=26.90 E-value=3.7e+02 Score=23.26 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhCCeeeEEecCChh
Q 022028 223 RLLLETRDMAREFKTGIHMHVAEIPY 248 (304)
Q Consensus 223 e~l~~~~~~a~~~~~~~~~H~~E~~~ 248 (304)
.....+..+|++..+++.+|+++..+
T Consensus 56 ~~~~~~~~~a~~~~VPV~lHLDH~~~ 81 (276)
T cd00947 56 LLVAMVKAAAERASVPVALHLDHGSS 81 (276)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 34455667788889999999999864
No 211
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=26.82 E-value=3.7e+02 Score=22.82 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcch
Q 022028 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE 289 (304)
Q Consensus 221 ~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~d 289 (304)
.+..-+++.+++++.+..+.++++=+.++. ..+. ..+.-+++|-|+ .++||....+.|
T Consensus 41 ~e~l~krv~~la~~~~s~~v~~cDV~~d~~--i~~~------f~~i~~~~g~lD---~lVHsIaFa~k~ 98 (259)
T COG0623 41 GERLEKRVEELAEELGSDLVLPCDVTNDES--IDAL------FATIKKKWGKLD---GLVHSIAFAPKE 98 (259)
T ss_pred cHHHHHHHHHHHhhccCCeEEecCCCCHHH--HHHH------HHHHHHhhCccc---EEEEEeccCChH
Confidence 456667777888888777777775443321 1111 112223445554 678888877744
No 212
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=26.76 E-value=2.2e+02 Score=23.40 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=15.8
Q ss_pred HHHHHHHHhCC-eeeEEecCChhhHHHHHHh
Q 022028 227 ETRDMAREFKT-GIHMHVAEIPYENQVVMDT 256 (304)
Q Consensus 227 ~~~~~a~~~~~-~~~~H~~E~~~~~~~~~~~ 256 (304)
.+.+++++.++ .+++|-.|+....+..++.
T Consensus 68 ~i~~~~~~~~~d~vQLHg~e~~~~~~~l~~~ 98 (210)
T PRK01222 68 EIDEIVETVPLDLLQLHGDETPEFCRQLKRR 98 (210)
T ss_pred HHHHHHHhcCCCEEEECCCCCHHHHHHHHhh
Confidence 34455555543 4556656665555555543
No 213
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=26.45 E-value=4.7e+02 Score=23.35 Aligned_cols=100 Identities=9% Similarity=-0.024 Sum_probs=53.6
Q ss_pred HHHHHhcCcceeec--CCCC--CHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCC
Q 022028 131 GIELIHSGVTCFAE--AGGQ--HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADG 206 (304)
Q Consensus 131 ~~~~l~~GvTtv~d--~~~~--~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (304)
+..++.+|+..++- +... .....++.+++.|.......+... . ..++.+.+..+.+.+ .+..
T Consensus 94 l~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~----------~-~~~e~l~~~a~~~~~---~Ga~ 159 (337)
T PRK08195 94 LKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSH----------M-APPEKLAEQAKLMES---YGAQ 159 (337)
T ss_pred HHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEecc----------C-CCHHHHHHHHHHHHh---CCCC
Confidence 45567889988652 2211 133456677888988765543221 1 112222222222332 2223
Q ss_pred CeEEEEeeCcccCCCHHHHHHHHHHHHHh---CCeeeEEecCCh
Q 022028 207 RIRIWFGIRQIMNATDRLLLETRDMAREF---KTGIHMHVAEIP 247 (304)
Q Consensus 207 ~i~~~~~~~~~~~~~~e~l~~~~~~a~~~---~~~~~~H~~E~~ 247 (304)
.+ .+.- +.-..+|+.+.+++...++. ++++.+|.+.+.
T Consensus 160 ~i--~i~D-T~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hnnl 200 (337)
T PRK08195 160 CV--YVVD-SAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNL 200 (337)
T ss_pred EE--EeCC-CCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCc
Confidence 22 2221 22245788787777777664 689999988775
No 214
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=25.66 E-value=3.4e+02 Score=21.47 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=17.4
Q ss_pred eeeeEEEeCCEEEEecCChhh
Q 022028 39 RNGGVFVVQDRIKAIGQSADI 59 (304)
Q Consensus 39 ~~~~I~I~~g~I~~i~~~~~~ 59 (304)
.-|.++++|++|++.|-+..+
T Consensus 29 ~VGAvIvkd~rIiatGYNG~p 49 (164)
T COG2131 29 QVGAVIVKDGRIIATGYNGAP 49 (164)
T ss_pred ceeEEEEeCCeEEEeecCCCC
Confidence 457999999999999977653
No 215
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=25.61 E-value=2.5e+02 Score=25.32 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCC-C--------CCHHHHHHHhCC
Q 022028 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV-D--------HGTVTFLDKIEF 272 (304)
Q Consensus 221 ~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~-~--------~~~~~~l~~~g~ 272 (304)
.++.++++.+.|+++++++.+=++.+.-+.+ ..++||. + ...++.++++||
T Consensus 115 ~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~-~~~~yg~~t~eamveSAl~~~~~le~~~f 174 (360)
T PRK00366 115 RDERVREVVEAAKDYGIPIRIGVNAGSLEKD-LLEKYGEPTPEALVESALRHAKILEELGF 174 (360)
T ss_pred hHHHHHHHHHHHHHCCCCEEEecCCccChHH-HHHHcCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3788999999999999999999988876644 4555764 2 112456777887
No 216
>PRK06801 hypothetical protein; Provisional
Probab=25.50 E-value=4.2e+02 Score=23.09 Aligned_cols=39 Identities=8% Similarity=-0.020 Sum_probs=26.1
Q ss_pred EEEeeCcccCCC-HHHHHHHHHHHHHhCCeeeEEecCChh
Q 022028 210 IWFGIRQIMNAT-DRLLLETRDMAREFKTGIHMHVAEIPY 248 (304)
Q Consensus 210 ~~~~~~~~~~~~-~e~l~~~~~~a~~~~~~~~~H~~E~~~ 248 (304)
+.+++....... +.....+...|++..+++.+|+++...
T Consensus 47 l~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~ 86 (286)
T PRK06801 47 INIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLDHGLH 86 (286)
T ss_pred EEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 344443332234 445566778888899999999998865
No 217
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=25.31 E-value=4.4e+02 Score=22.93 Aligned_cols=51 Identities=8% Similarity=0.088 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEe-eCcccCCCHH-HHHHHHHHHHHhCCeeeEEec
Q 022028 191 QSQKELYAKHHHAADGRIRIWFG-IRQIMNATDR-LLLETRDMAREFKTGIHMHVA 244 (304)
Q Consensus 191 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~e-~l~~~~~~a~~~~~~~~~H~~ 244 (304)
+++.+++++- +-+.+.+.++ .|+.+...+. .++.+.++.+..++++.+|=.
T Consensus 158 e~a~~Fv~~T---gvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlHGg 210 (284)
T PRK12857 158 EEARRFVEET---GVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLHGS 210 (284)
T ss_pred HHHHHHHHHH---CCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCC
Confidence 3455555443 3344444443 3444432222 233344555556899999943
No 218
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=25.06 E-value=2.3e+02 Score=24.86 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCe----eeEEecCChhhHHHHHHh
Q 022028 225 LLETRDMAREFKTG----IHMHVAEIPYENQVVMDT 256 (304)
Q Consensus 225 l~~~~~~a~~~~~~----~~~H~~E~~~~~~~~~~~ 256 (304)
+..-.+++...|.. +.+|..-.....+.+.++
T Consensus 132 L~~~~~~~~~lG~~~~~~vViHpG~~~~~ke~al~r 167 (303)
T PRK02308 132 LEYHAKLLDLMGIDDSSKINIHVGGAYGDKEKALER 167 (303)
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCccCCCHHHHHHH
Confidence 34456666677766 778876543333334443
No 219
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=25.02 E-value=4.5e+02 Score=22.67 Aligned_cols=101 Identities=11% Similarity=0.077 Sum_probs=55.8
Q ss_pred HHHHHhcCcceeecCCCCCHHHHHHHHHHcCCeEEeecccccCCCCCCCCc--------ccCChHHHHHHHHHHHHHHcC
Q 022028 131 GIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASW--------AVRTTDDCIQSQKELYAKHHH 202 (304)
Q Consensus 131 ~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 202 (304)
+..+-..|+.+++-......+...+.|++.|+-.+........+ ..... .....+...+..++++++..+
T Consensus 42 ~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~N 119 (298)
T PF02836_consen 42 LELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHG--SWQDFGNCNYDADDPEFRENAEQELREMVRRDRN 119 (298)
T ss_dssp HHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCT--SSSSTSCTSCTTTSGGHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccC--ccccCCccccCCCCHHHHHHHHHHHHHHHHcCcC
Confidence 34466889999997654455788999999999887544331111 11100 011123445677888888876
Q ss_pred CCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCC
Q 022028 203 AADGRIRIWFGIRQIMNATDRLLLETRDMAREFKT 237 (304)
Q Consensus 203 ~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~ 237 (304)
.. ..+...+.-.. ...+.++.+.+++++.+-
T Consensus 120 HP-SIi~W~~gNE~---~~~~~~~~l~~~~k~~Dp 150 (298)
T PF02836_consen 120 HP-SIIMWSLGNES---DYREFLKELYDLVKKLDP 150 (298)
T ss_dssp -T-TEEEEEEEESS---HHHHHHHHHHHHHHHH-T
T ss_pred cC-chheeecCccC---ccccchhHHHHHHHhcCC
Confidence 42 33444444322 345567788888888653
No 220
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=24.99 E-value=4e+02 Score=23.81 Aligned_cols=111 Identities=16% Similarity=0.161 Sum_probs=63.5
Q ss_pred HHHhcCcceee-cCCC----CCHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCC
Q 022028 133 ELIHSGVTCFA-EAGG----QHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGR 207 (304)
Q Consensus 133 ~~l~~GvTtv~-d~~~----~~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (304)
+....|+-.++ +.+. .....+.+++++.|+-.-+|....+.-.-+...|....++..++.+...++.+...+-+.
T Consensus 90 ~~~~~g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~ 169 (361)
T COG0821 90 EAAECGVDKVRINPGNIGFKDRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDD 169 (361)
T ss_pred HhhhcCcceEEECCcccCcHHHHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCc
Confidence 34566766664 2221 124577888899988776665443211111222334456666666655555555444344
Q ss_pred eEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCCh
Q 022028 208 IRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP 247 (304)
Q Consensus 208 i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~ 247 (304)
+++.+.. |....++++-..+|++-+.++|.=+.|..
T Consensus 170 i~iS~K~----Sdv~~~v~aYr~lA~~~dyPLHLGvTEAG 205 (361)
T COG0821 170 IKVSVKA----SDVQLMVAAYRLLAKRCDYPLHLGVTEAG 205 (361)
T ss_pred EEEEEEc----CCHHHHHHHHHHHHHhcCCCcccceeccc
Confidence 5544432 33455677788888888888776666654
No 221
>PHA00742 hypothetical protein
Probab=24.27 E-value=1.3e+02 Score=23.77 Aligned_cols=47 Identities=6% Similarity=0.047 Sum_probs=32.4
Q ss_pred eeeEEecCChhhHHHHHHhcCCC-----CCHHHHHHHhCCCCCCeeEEEeccC
Q 022028 238 GIHMHVAEIPYENQVVMDTRKVD-----HGTVTFLDKIEFLQNNLLSAHTVWV 285 (304)
Q Consensus 238 ~~~~H~~E~~~~~~~~~~~~g~~-----~~~~~~l~~~g~l~~~~~~~H~~~l 285 (304)
.+-+-+..+....+++++++|.+ .+-++...+..++| |++++|..-.
T Consensus 91 l~~IDitGSswteeqSkeRYGe~vyAiLstKvevA~kydV~G-Rv~FihynD~ 142 (211)
T PHA00742 91 LVWIDITGSSWTEEQSKERYGESVYAILSTKVEVAKKYDVMG-RVWFIHYNDT 142 (211)
T ss_pred eEEEEccCCccchhhhHHhcCcchHHHHHHHHHHHHhhcccc-eEEEEEecCh
Confidence 34556667777778888888863 12355666778887 8899997643
No 222
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=24.26 E-value=81 Score=27.47 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHHHHHHhCCeeeEEecCC
Q 022028 219 NATDRLLLETRDMAREFKTGIHMHVAEI 246 (304)
Q Consensus 219 ~~~~e~l~~~~~~a~~~~~~~~~H~~E~ 246 (304)
-.+.+.++++.++|+++|++ +|++-.
T Consensus 141 ~~s~~el~ai~~~a~~~gl~--lhmDGA 166 (290)
T PF01212_consen 141 VYSLEELRAISELAREHGLP--LHMDGA 166 (290)
T ss_dssp ---HHHHHHHHHHHHHHT-E--EEEEET
T ss_pred eCCHHHHHHHHHHHHhCceE--EEEehh
Confidence 36889999999999999987 455444
No 223
>PRK06189 allantoinase; Provisional
Probab=24.05 E-value=1.2e+02 Score=28.19 Aligned_cols=55 Identities=9% Similarity=0.055 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhCCee-eEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCee---EEEeccCCcchhc
Q 022028 222 DRLLLETRDMAREFKTGI-HMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLL---SAHTVWVNHTEVN 291 (304)
Q Consensus 222 ~e~l~~~~~~a~~~~~~~-~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~---~~H~~~l~~~di~ 291 (304)
.+.++.+..+|++.|+++ ..|++ +....+ .++.+.+.|. +++ +.|+.+++++++.
T Consensus 218 ~~~v~~~l~la~~~g~~~hi~HiS-t~~~~~-----------~i~~~k~~g~---~vt~ev~ph~L~l~~~~~~ 276 (451)
T PRK06189 218 LEAVQRALLYAQETGCPLHFVHIS-SGKAVA-----------LIAEAKKRGV---DVSVETCPHYLLFTEEDFE 276 (451)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECC-CHHHHH-----------HHHHHHHCCC---cEEEEeCHHHhhcCHhHhh
Confidence 345677899999999886 33443 222222 2223333343 443 4788999988875
No 224
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=23.83 E-value=3.3e+02 Score=23.00 Aligned_cols=60 Identities=10% Similarity=0.155 Sum_probs=34.1
Q ss_pred CCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCC
Q 022028 206 GRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEF 272 (304)
Q Consensus 206 ~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~ 272 (304)
+.+|.+-+..+. ..++.+++..++|+++|+.+.. ..+..+....+..+.. .+++.+++|+
T Consensus 26 D~lKfg~Gt~~l--~~~~~l~eki~la~~~~V~v~~--GGtl~E~~~~q~~~~~---Yl~~~k~lGf 85 (237)
T TIGR03849 26 TFVKFGWGTSAL--IDRDIVKEKIEMYKDYGIKVYP--GGTLFEIAHSKGKFDE---YLNECDELGF 85 (237)
T ss_pred eeEEecCceEee--ccHHHHHHHHHHHHHcCCeEeC--CccHHHHHHHhhhHHH---HHHHHHHcCC
Confidence 345544433222 3557888888888988887653 3445555444433221 4456666666
No 225
>PLN02540 methylenetetrahydrofolate reductase
Probab=23.74 E-value=4e+02 Score=25.78 Aligned_cols=73 Identities=11% Similarity=0.003 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHh
Q 022028 191 QSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKI 270 (304)
Q Consensus 191 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~ 270 (304)
+...+.+++....+...+.+.-+..+ +..+..++.+..+.++.|+...+|+.=.....+..++ .++.+.++
T Consensus 15 ~nL~~~~~rl~~~~P~FisVT~gAgG--st~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~-------~L~~a~~~ 85 (565)
T PLN02540 15 DNLFERMDRMVAHGPLFCDITWGAGG--STADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDH-------ALETIKSN 85 (565)
T ss_pred HHHHHHHHHHhccCCCEEEeCCCCCC--CcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHH-------HHHHHHHC
Confidence 33444444444444444443333222 3344455544444444588888887655444444333 34455556
Q ss_pred CC
Q 022028 271 EF 272 (304)
Q Consensus 271 g~ 272 (304)
|+
T Consensus 86 GI 87 (565)
T PLN02540 86 GI 87 (565)
T ss_pred CC
Confidence 64
No 226
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=23.30 E-value=2.5e+02 Score=25.56 Aligned_cols=31 Identities=6% Similarity=-0.090 Sum_probs=25.1
Q ss_pred EEeeCcc--cCCCHHHHHHHHHHHHHhCCeeeE
Q 022028 211 WFGIRQI--MNATDRLLLETRDMAREFKTGIHM 241 (304)
Q Consensus 211 ~~~~~~~--~~~~~e~l~~~~~~a~~~~~~~~~ 241 (304)
.-.||.| ...+.+.|+.+.++|+++|+.+..
T Consensus 164 LCnPHNP~Grvwt~eeL~~i~elc~kh~v~VIS 196 (388)
T COG1168 164 LCNPHNPTGRVWTKEELRKIAELCLRHGVRVIS 196 (388)
T ss_pred EeCCCCCCCccccHHHHHHHHHHHHHcCCEEEe
Confidence 3467766 346899999999999999998864
No 227
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=23.29 E-value=3.7e+02 Score=22.64 Aligned_cols=65 Identities=12% Similarity=0.003 Sum_probs=37.9
Q ss_pred CCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccC
Q 022028 206 GRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV 285 (304)
Q Consensus 206 ~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l 285 (304)
|.+-..+...+ ..+.+.++.+.+.|.-.++.+|.=+.+..+..+ .++++.+.|+ .=++.|+-..
T Consensus 89 GVV~G~lt~dg--~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~-----------ale~li~~Gv---~RILTsGg~~ 152 (241)
T COG3142 89 GVVLGALTADG--NIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLE-----------ALEQLIELGV---ERILTSGGKA 152 (241)
T ss_pred cEEEeeecCCC--ccCHHHHHHHHHHccCCceeeehhhhhcCCHHH-----------HHHHHHHCCC---cEEecCCCcC
Confidence 44444444433 467888999988887555444444567766444 4555666665 2255555544
Q ss_pred C
Q 022028 286 N 286 (304)
Q Consensus 286 ~ 286 (304)
+
T Consensus 153 s 153 (241)
T COG3142 153 S 153 (241)
T ss_pred c
Confidence 3
No 228
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=23.28 E-value=1.5e+02 Score=31.15 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=40.1
Q ss_pred ccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCccee--ecCCC-CCHHHHHHHHH
Q 022028 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCF--AEAGG-QHVSEMAKAVE 158 (304)
Q Consensus 82 ~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv--~d~~~-~~~~~~~~~~~ 158 (304)
||.+|+|..+|.+.|. .+.+++... +...|..++ .|++. .....+.++|+
T Consensus 3 fvhLhvhS~ySlLdg~--------------------~~i~~lv~~-------A~~~g~~alAlTDh~~m~Ga~~F~~~a~ 55 (1107)
T PRK06920 3 FVHLQCQTVFSLLKSA--------------------CKIDELVVR-------AKELGYSSLAITDENVMYGVIPFYKACK 55 (1107)
T ss_pred ceeeecCcccchhccC--------------------CCHHHHHHH-------HHHCCCCEEEEEeCChHhHHHHHHHHHH
Confidence 8999999999876552 223443322 344566555 35543 23457788899
Q ss_pred HcCCeEEeeccc
Q 022028 159 LLGLRACLVQST 170 (304)
Q Consensus 159 ~~gir~~~~~~~ 170 (304)
+.|++.++|..+
T Consensus 56 ~~gIkPIiG~e~ 67 (1107)
T PRK06920 56 KHGIHPIIGLTA 67 (1107)
T ss_pred HcCCCEeeeeEE
Confidence 999998887654
No 229
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=23.00 E-value=4.3e+02 Score=21.77 Aligned_cols=105 Identities=10% Similarity=-0.075 Sum_probs=54.5
Q ss_pred HhcCcceeecCCCCCHHHHHHHHHHcCCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCCCCCeEEEEee
Q 022028 135 IHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAADGRIRIWFGI 214 (304)
Q Consensus 135 l~~GvTtv~d~~~~~~~~~~~~~~~~gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 214 (304)
|..-+|-.+.....+.....+.+.+.|....+-.+.-..+. ..+....-.....-++.+..++.....-.+.+.+.=..
T Consensus 19 Lp~pvT~ai~P~~~~~~~~a~~a~~~G~EvllhlPMep~~~-~~~gp~~L~~~~~~~~i~~~l~~al~~vp~a~GvnNhm 97 (213)
T PF04748_consen 19 LPFPVTFAILPYAPYSREWAERARAAGHEVLLHLPMEPKGY-KDPGPGALLTGMSEEEIRKRLEAALARVPGAVGVNNHM 97 (213)
T ss_dssp SSTTCEEEEETTSTTHHHHHHHHHHCT-EEEEEEEE--TTT-T---TT-B-TTS-HHHHHHHHHHHHCCSTT-SEEEEEE
T ss_pred CCCCeEEEECCCCCChHHHHHHHHHcCCEEEEeCCCCCCCC-CCcccccccCCCCHHHHHHHHHHHHHHCCCcEEEecCC
Confidence 45556666666656777888888888887765443321111 01100000111112334444444444333444444444
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCeee
Q 022028 215 RQIMNATDRLLLETRDMAREFKTGIH 240 (304)
Q Consensus 215 ~~~~~~~~e~l~~~~~~a~~~~~~~~ 240 (304)
.+..+.+++.++.+.+..+++|+.+.
T Consensus 98 GS~~T~~~~~m~~vl~~l~~~gl~Fv 123 (213)
T PF04748_consen 98 GSRFTSDREAMRWVLEVLKERGLFFV 123 (213)
T ss_dssp -CCHHC-HHHHHHHHHHHHHTT-EEE
T ss_pred CccccCCHHHHHHHHHHHHHcCCEEE
Confidence 56678889999999999999888665
No 230
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=22.89 E-value=1.8e+02 Score=20.79 Aligned_cols=27 Identities=15% Similarity=0.009 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCeeeEEecCChhhH
Q 022028 224 LLLETRDMAREFKTGIHMHVAEIPYEN 250 (304)
Q Consensus 224 ~l~~~~~~a~~~~~~~~~H~~E~~~~~ 250 (304)
...++.++|+++|+++.+|..++.-..
T Consensus 34 ~~~~i~~~A~~~gi~~~~h~~~~~i~~ 60 (111)
T PF13378_consen 34 EALRIAALAEAHGIPVMPHSMESGIGL 60 (111)
T ss_dssp HHHHHHHHHHHTT-EEEEBSSSSHHHH
T ss_pred HHHHHHHHHHHhCCCEEecCCCCcHHH
Confidence 355699999999999999987665433
No 231
>PRK05451 dihydroorotase; Provisional
Probab=22.72 E-value=3.5e+02 Score=24.08 Aligned_cols=24 Identities=4% Similarity=0.037 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHhCCeeeEEec
Q 022028 221 TDRLLLETRDMAREFKTGIHMHVA 244 (304)
Q Consensus 221 ~~e~l~~~~~~a~~~~~~~~~H~~ 244 (304)
+++.+..+++.++++|+++.+|+-
T Consensus 116 dd~~l~~~~e~~~~~g~~V~vHaE 139 (345)
T PRK05451 116 DIEKIYPVLEAMQKLGMPLLVHGE 139 (345)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecC
Confidence 566777888999999999999963
No 232
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=22.69 E-value=1.8e+02 Score=20.85 Aligned_cols=22 Identities=18% Similarity=0.027 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHHhCCeeeEE
Q 022028 221 TDRLLLETRDMAREFKTGIHMH 242 (304)
Q Consensus 221 ~~e~l~~~~~~a~~~~~~~~~H 242 (304)
....++.++.+|++.|+++...
T Consensus 65 ~~pd~~Hl~~LA~ekgVpVe~~ 86 (100)
T PF15608_consen 65 DDPDLAHLLLLAEEKGVPVEVY 86 (100)
T ss_pred CCccHHHHHHHHHHcCCcEEEe
Confidence 4456788999999999988765
No 233
>COG2063 FlgH Flagellar basal body L-ring protein [Cell motility and secretion]
Probab=22.62 E-value=2.9e+02 Score=23.14 Aligned_cols=44 Identities=16% Similarity=0.324 Sum_probs=29.5
Q ss_pred ceeeeeeEEEeCCEEEEecCChhhhhhhcCCCceEEeCCCCEeeccccccCccchh
Q 022028 36 RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (304)
Q Consensus 36 ~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~~~~~vID~~g~iv~PG~ID~H~Hl~~ 91 (304)
+++++|.++|++.|=+.|.. +.++|-..| +|=|==||.-.-+..
T Consensus 155 ~VLpNGNL~I~G~Kev~vN~-----------~~e~i~vsG-vVRP~DI~~~NtI~S 198 (230)
T COG2063 155 QVLPNGNLVIEGEKEVRVNG-----------EKEIIRVSG-VVRPDDISGDNTISS 198 (230)
T ss_pred EEcCCCCEEEEEEEEEEECC-----------ceEEEEEee-eEcccccCCCCeecc
Confidence 47789999999888777754 335666666 666666665555543
No 234
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=22.36 E-value=6.5e+02 Score=23.75 Aligned_cols=19 Identities=5% Similarity=0.011 Sum_probs=10.6
Q ss_pred CHHHHHHHHHHHHHhCCee
Q 022028 221 TDRLLLETRDMAREFKTGI 239 (304)
Q Consensus 221 ~~e~l~~~~~~a~~~~~~~ 239 (304)
..+.++...+.+++.|..+
T Consensus 130 d~~n~~~ai~~ak~~G~~~ 148 (468)
T PRK12581 130 DPRNIQQALRAVKKTGKEA 148 (468)
T ss_pred CHHHHHHHHHHHHHcCCEE
Confidence 3445555666666666543
No 235
>PRK02134 hypothetical protein; Provisional
Probab=22.34 E-value=4.9e+02 Score=22.10 Aligned_cols=56 Identities=11% Similarity=0.176 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEE
Q 022028 186 TDDCIQSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMH 242 (304)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H 242 (304)
.++..++.++.++++.... |...-.+.-|.-.-..+...+.+.++|+++|+++...
T Consensus 98 ~~ev~~E~~aQi~~f~~~~-G~~p~hiD~H~h~h~~p~v~~~~~~la~ey~lpvR~~ 153 (249)
T PRK02134 98 LEEIAQELAAQYERFLSLF-GRKPTHLDSHHHVHMLPQIFPIVARFAAEYGVPLRID 153 (249)
T ss_pred HHHHHHHHHHHHHHHHHhh-CCCCCeeecccccccChhHHHHHHHHHHHcCCcEEec
Confidence 3455556777777766511 2211223333222346888999999999999998754
No 236
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=22.24 E-value=4.9e+02 Score=22.14 Aligned_cols=64 Identities=6% Similarity=-0.008 Sum_probs=37.6
Q ss_pred CCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEE--ecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEe
Q 022028 205 DGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMH--VAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHT 282 (304)
Q Consensus 205 ~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H--~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~ 282 (304)
+|.+-..+.+. ...+.+.++.+.+.|. ++++..| +++..+..+ .++.|.++|+ ..++.|+
T Consensus 88 dGvV~G~L~~d--g~vD~~~~~~Li~~a~--~~~vTFHRAfD~~~d~~~-----------al~~l~~lG~---~rILTSG 149 (248)
T PRK11572 88 PGLVTGVLDVD--GHVDMPRMRKIMAAAG--PLAVTFHRAFDMCANPLN-----------ALKQLADLGV---ARILTSG 149 (248)
T ss_pred CEEEEeeECCC--CCcCHHHHHHHHHHhc--CCceEEechhhccCCHHH-----------HHHHHHHcCC---CEEECCC
Confidence 34444445543 3578889999999984 6778888 345444433 3555555555 3345444
Q ss_pred ccCC
Q 022028 283 VWVN 286 (304)
Q Consensus 283 ~~l~ 286 (304)
...+
T Consensus 150 g~~~ 153 (248)
T PRK11572 150 QQQD 153 (248)
T ss_pred CCCC
Confidence 4443
No 237
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=21.98 E-value=2.2e+02 Score=25.45 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCC-C--------CCHHHHHHHhCCC
Q 022028 221 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV-D--------HGTVTFLDKIEFL 273 (304)
Q Consensus 221 ~~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~-~--------~~~~~~l~~~g~l 273 (304)
+++-++++.+.|+++++++.+=++.+.-+. ...++||. + ..-++.++++||-
T Consensus 106 ~~e~v~~vv~~ak~~~ipIRIGVN~GSL~~-~~~~kyg~~t~eamveSAl~~v~~le~~~F~ 166 (346)
T TIGR00612 106 FRERVRDVVEKARDHGKAMRIGVNHGSLER-RLLEKYGDATAEAMVQSALEEAAILEKLGFR 166 (346)
T ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCcH-HHHHHcCCCCHHHHHHHHHHHHHHHHHCCCC
Confidence 478899999999999999999998877664 45556773 2 1124566777873
No 238
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=21.89 E-value=2.1e+02 Score=29.97 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=41.2
Q ss_pred ccccCccchhhhhhcccCCCCccccccccccCccCCCChHHHHHHHHHHHHHHHhcCccee--ecCCC-CCHHHHHHHHH
Q 022028 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCF--AEAGG-QHVSEMAKAVE 158 (304)
Q Consensus 82 ~ID~H~Hl~~s~~~g~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv--~d~~~-~~~~~~~~~~~ 158 (304)
||.+|+|..+|.+.|. .+++++... +...|..++ .|++. .....+.++|+
T Consensus 2 fvhLh~hS~YSlldg~--------------------~~i~~lv~~-------A~~~g~~alAlTD~~~m~Ga~~F~~~a~ 54 (1034)
T PRK07279 2 FAQLDTKTVYSFMDSL--------------------IDLEKYVER-------AKELGYQTIGIMDKDNLYGAYHFIEGAQ 54 (1034)
T ss_pred eeeeecCCCCcccccc--------------------CCHHHHHHH-------HHHCCCCEEEEEcCCccccHHHHHHHHH
Confidence 7889999988766442 234443332 344566655 35543 34567889999
Q ss_pred HcCCeEEeeccc
Q 022028 159 LLGLRACLVQST 170 (304)
Q Consensus 159 ~~gir~~~~~~~ 170 (304)
+.|++.++|..+
T Consensus 55 ~~gIkPIiG~e~ 66 (1034)
T PRK07279 55 KNGLQPILGLEL 66 (1034)
T ss_pred HcCCcEEEEEEE
Confidence 999999988765
No 239
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=21.45 E-value=5.4e+02 Score=22.33 Aligned_cols=75 Identities=11% Similarity=0.060 Sum_probs=51.1
Q ss_pred cccCCC-HHHHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhc-----CCC-CCHHHHHHHhCCCCCCeeEEEeccCCcc
Q 022028 216 QIMNAT-DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTR-----KVD-HGTVTFLDKIEFLQNNLLSAHTVWVNHT 288 (304)
Q Consensus 216 ~~~~~~-~e~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~-----g~~-~~~~~~l~~~g~l~~~~~~~H~~~l~~~ 288 (304)
+..... ++-++-+.++.+++|+++...+++... .+.+.+.- |.. .+-.++|...|-.+.-+.+-.+..++++
T Consensus 66 sFqG~G~eeGL~iL~~vk~~~GlpvvTeV~~~~~-~~~~ae~vDilQIgAr~~rntdLL~a~~~t~kpV~lKrGqf~s~~ 144 (281)
T PRK12457 66 SYRGVGLDEGLRIFEEVKARFGVPVITDVHEVEQ-AAPVAEVADVLQVPAFLARQTDLVVAIAKTGKPVNIKKPQFMSPT 144 (281)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCceEEEeCCHHH-HHHHhhhCeEEeeCchhhchHHHHHHHhccCCeEEecCCCcCCHH
Confidence 334456 778888889999999999999987754 33333311 100 1245777777776666777888888887
Q ss_pred hhc
Q 022028 289 EVN 291 (304)
Q Consensus 289 di~ 291 (304)
|+.
T Consensus 145 e~~ 147 (281)
T PRK12457 145 QMK 147 (281)
T ss_pred HHH
Confidence 775
No 240
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.28 E-value=1.5e+02 Score=26.57 Aligned_cols=48 Identities=10% Similarity=0.003 Sum_probs=31.2
Q ss_pred ChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhcccccccc
Q 022028 246 IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVNCTFGNFK 298 (304)
Q Consensus 246 ~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~~p~sN~~ 298 (304)
+.++++.+.+.|.. ..+.+.+.|+-+=.+.+.|+.-| +.+-||.+|.+
T Consensus 135 t~~eI~~ii~~f~~---aA~~a~~aGfDgVeih~ahGyLl--~qFlsp~~N~R 182 (353)
T cd04735 135 THEEIEDIIDAFGE---ATRRAIEAGFDGVEIHGANGYLI--QQFFSPHSNRR 182 (353)
T ss_pred CHHHHHHHHHHHHH---HHHHHHHcCCCEEEEccccchHH--HHhcCCccCCC
Confidence 34667777777765 67778888985544555665543 35557877765
No 241
>PRK09357 pyrC dihydroorotase; Validated
Probab=21.20 E-value=1.6e+02 Score=26.95 Aligned_cols=58 Identities=5% Similarity=0.115 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCeeeEEecCChhhHHHHHHhcCCCCCHHHHHHHhCCCCCCeeEEEeccCCcchhcc
Q 022028 224 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEVNC 292 (304)
Q Consensus 224 ~l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~~~g~~~~~~~~l~~~g~l~~~~~~~H~~~l~~~di~~ 292 (304)
.+..+..+|++.++++++--..+....+ .++...+.|+--...++.|...++++++..
T Consensus 212 ~i~~~~~la~~~g~~~hi~H~s~~~~~~-----------~i~~a~~~g~~v~~e~~ph~L~~~~~~~~~ 269 (423)
T PRK09357 212 MIARDVLLAEATGARVHICHVSTAGSVE-----------LIRWAKALGIKVTAEVTPHHLLLTDEDLLT 269 (423)
T ss_pred HHHHHHHHHHHHCCcEEEEeCCCHHHHH-----------HHHHHHHcCCCEEEEechHHheEcHHHHhC
Confidence 4666788999999775443333333332 344555566522233667777888887653
No 242
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=21.06 E-value=5.6e+02 Score=22.33 Aligned_cols=121 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHhcCccee-ecCCCCCHHHHHHHHHHc-----CCeEEeecccccCCCCCCCCcccCChHHHHHHHHHHHHHHcCCC
Q 022028 131 GIELIHSGVTCF-AEAGGQHVSEMAKAVELL-----GLRACLVQSTMDCGEGLPASWAVRTTDDCIQSQKELYAKHHHAA 204 (304)
Q Consensus 131 ~~~~l~~GvTtv-~d~~~~~~~~~~~~~~~~-----gir~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (304)
+..+++.|+|+| .|-+....++.++..++. .....+-..+...|..-.........-...+++.+++++-.-
T Consensus 93 i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~Tgv-- 170 (286)
T PRK08610 93 CKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGI-- 170 (286)
T ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCC--
Q ss_pred CCCeEEEEe-eCcccCCCHHH-HHHHHHHHHHhCCeeeEEecCChhhHHHHHH
Q 022028 205 DGRIRIWFG-IRQIMNATDRL-LLETRDMAREFKTGIHMHVAEIPYENQVVMD 255 (304)
Q Consensus 205 ~~~i~~~~~-~~~~~~~~~e~-l~~~~~~a~~~~~~~~~H~~E~~~~~~~~~~ 255 (304)
+.+.+.++ .|+.|...+.+ ++.+.++.++.++|+.+| .-+.-..+..++
T Consensus 171 -D~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLH-GgSG~~~e~~~~ 221 (286)
T PRK08610 171 -DALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLH-GGTGIPTKDIQK 221 (286)
T ss_pred -CEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEe-CCCCCCHHHHHH
No 243
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=20.71 E-value=4.6e+02 Score=22.83 Aligned_cols=50 Identities=8% Similarity=0.066 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEEeeCcccCCCHHHHHHHHHHHHHhCCeeeEEecCChhh
Q 022028 192 SQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYE 249 (304)
Q Consensus 192 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~a~~~~~~~~~H~~E~~~~ 249 (304)
.++++|++.. ..|.+.+. ...+.+.+..+.+.|.+++++|.+=++|..-.
T Consensus 138 ~vR~~I~~A~----kVIAIVMD----~FTD~dIf~DLleAa~kR~VpVYiLLD~~~~~ 187 (284)
T PF07894_consen 138 VVRRMIQQAQ----KVIAIVMD----VFTDVDIFCDLLEAANKRGVPVYILLDEQNLP 187 (284)
T ss_pred HHHHHHHHhc----ceeEEEee----ccccHHHHHHHHHHHHhcCCcEEEEechhcCh
Confidence 3455565543 34554443 23577889999999999999999999877643
No 244
>TIGR00159 conserved hypothetical protein TIGR00159. These proteins have no detectable global or local homology to any protein of known function. Members are restricted to the bacteria and found broadly in lineages other than the Proteobacteria.
Probab=20.52 E-value=91 Score=25.76 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=17.6
Q ss_pred CceeeeeeEEEeCCEEEEecCCh
Q 022028 35 SRVFRNGGVFVVQDRIKAIGQSA 57 (304)
Q Consensus 35 ~~~~~~~~I~I~~g~I~~i~~~~ 57 (304)
..++.||.|.|++|||++.+-..
T Consensus 121 ~splHDGAvII~~~rI~aA~~~L 143 (211)
T TIGR00159 121 ETPLHDGAVIIRDNKIVAAGSYL 143 (211)
T ss_pred CCCCCCcEEEEECCEEEEEEEEe
Confidence 35667999999999999866443
No 245
>PLN02363 phosphoribosylanthranilate isomerase
Probab=20.04 E-value=4.5e+02 Score=22.47 Aligned_cols=26 Identities=12% Similarity=-0.015 Sum_probs=11.3
Q ss_pred CeEEEEeeCcccCCCHHHHHHHHHHH
Q 022028 207 RIRIWFGIRQIMNATDRLLLETRDMA 232 (304)
Q Consensus 207 ~i~~~~~~~~~~~~~~e~l~~~~~~a 232 (304)
.+.+.+.+.++..+++++.+++.+..
T Consensus 70 ~iGfIf~~~SpR~Vs~e~a~~I~~~l 95 (256)
T PLN02363 70 FIGMILWPKSKRSISLSVAKEISQVA 95 (256)
T ss_pred EEEEecCCCCCCcCCHHHHHHHHHhc
Confidence 33333334444444444444444433
Done!