Query 022029
Match_columns 304
No_of_seqs 207 out of 1217
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:28:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022029.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022029hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3039 Uncharacterized conser 100.0 2.3E-92 4.9E-97 628.8 18.5 292 1-293 1-303 (303)
2 PF04641 Rtf2: Rtf2 RING-finge 100.0 1E-30 2.3E-35 241.9 10.7 147 37-281 31-182 (260)
3 KOG0883 Cyclophilin type, U bo 100.0 2.5E-30 5.4E-35 243.8 8.7 155 3-271 4-163 (518)
4 KOG3113 Uncharacterized conser 99.8 1.1E-20 2.5E-25 169.9 7.2 141 30-272 22-170 (293)
5 smart00504 Ubox Modified RING 99.2 3.9E-11 8.3E-16 87.1 4.5 54 211-268 1-54 (63)
6 KOG0320 Predicted E3 ubiquitin 99.1 2.9E-11 6.2E-16 104.6 4.1 58 209-268 129-186 (187)
7 PLN03208 E3 ubiquitin-protein 99.1 1.1E-10 2.4E-15 103.1 7.0 62 207-272 14-91 (193)
8 KOG0317 Predicted E3 ubiquitin 98.9 1.8E-09 3.9E-14 99.9 4.0 56 209-268 237-292 (293)
9 smart00504 Ubox Modified RING 98.8 3.7E-09 8E-14 76.6 4.7 32 41-72 2-33 (63)
10 PF13923 zf-C3HC4_2: Zinc fing 98.8 2.3E-09 5E-14 71.1 3.3 39 214-255 1-39 (39)
11 KOG0978 E3 ubiquitin ligase in 98.8 2E-09 4.3E-14 110.5 1.6 55 210-268 642-697 (698)
12 KOG0823 Predicted E3 ubiquitin 98.7 8.6E-09 1.9E-13 92.8 4.6 60 209-272 45-107 (230)
13 PF13639 zf-RING_2: Ring finge 98.7 6.2E-09 1.3E-13 70.7 2.3 43 213-256 2-44 (44)
14 PF15227 zf-C3HC4_4: zinc fing 98.7 1.5E-08 3.2E-13 68.5 3.0 38 214-255 1-42 (42)
15 PF13920 zf-C3HC4_3: Zinc fing 98.6 2.8E-08 6.1E-13 69.3 3.2 46 211-260 2-48 (50)
16 PF14634 zf-RING_5: zinc-RING 98.6 3.6E-08 7.8E-13 67.1 3.4 44 213-257 1-44 (44)
17 PF04564 U-box: U-box domain; 98.6 3.8E-08 8.2E-13 74.2 2.8 53 211-267 4-57 (73)
18 TIGR00570 cdk7 CDK-activating 98.5 4.6E-08 1E-12 92.3 3.6 55 211-266 3-60 (309)
19 TIGR00599 rad18 DNA repair pro 98.5 5.7E-08 1.2E-12 94.9 3.9 52 208-263 23-74 (397)
20 KOG0823 Predicted E3 ubiquitin 98.5 1.3E-07 2.9E-12 85.2 4.9 42 33-74 40-81 (230)
21 PF13445 zf-RING_UBOX: RING-ty 98.5 1.1E-07 2.4E-12 64.6 3.1 33 214-247 1-33 (43)
22 PHA02929 N1R/p28-like protein; 98.5 1.2E-07 2.5E-12 86.9 4.2 51 210-260 173-227 (238)
23 cd00162 RING RING-finger (Real 98.4 2.9E-07 6.2E-12 61.0 3.9 44 213-259 1-45 (45)
24 PF00097 zf-C3HC4: Zinc finger 98.4 2.8E-07 6.1E-12 61.3 3.5 39 214-255 1-41 (41)
25 PF04564 U-box: U-box domain; 98.3 3.8E-07 8.2E-12 68.8 3.1 33 40-72 4-36 (73)
26 smart00184 RING Ring finger. E 98.2 1.4E-06 3E-11 55.6 3.7 38 214-255 1-39 (39)
27 KOG2164 Predicted E3 ubiquitin 98.2 7.6E-07 1.6E-11 88.2 3.2 56 211-270 186-246 (513)
28 COG5574 PEX10 RING-finger-cont 98.2 6.5E-07 1.4E-11 82.2 2.5 55 209-267 213-269 (271)
29 PHA02926 zinc finger-like prot 98.1 1.6E-06 3.4E-11 78.1 3.3 51 210-260 169-230 (242)
30 PLN03208 E3 ubiquitin-protein 98.1 3.2E-06 6.9E-11 74.9 4.0 33 41-73 19-51 (193)
31 COG5432 RAD18 RING-finger-cont 98.0 1.9E-06 4.1E-11 80.1 1.7 51 207-261 21-71 (391)
32 KOG0287 Postreplication repair 98.0 1.3E-06 2.9E-11 82.6 0.6 52 209-264 21-72 (442)
33 PF11789 zf-Nse: Zinc-finger o 98.0 3E-06 6.5E-11 61.1 2.0 45 209-256 9-55 (57)
34 PF14835 zf-RING_6: zf-RING of 97.9 1.7E-06 3.7E-11 63.3 -0.2 50 211-265 7-56 (65)
35 PF11789 zf-Nse: Zinc-finger o 97.9 6.5E-06 1.4E-10 59.3 1.8 31 41-71 12-43 (57)
36 KOG0826 Predicted E3 ubiquitin 97.9 3.6E-06 7.8E-11 79.4 0.6 56 210-268 299-354 (357)
37 PF12678 zf-rbx1: RING-H2 zinc 97.8 2.1E-05 4.5E-10 59.3 3.7 44 213-256 21-73 (73)
38 KOG0317 Predicted E3 ubiquitin 97.8 1.5E-05 3.3E-10 74.1 2.7 36 38-73 237-272 (293)
39 PF13923 zf-C3HC4_2: Zinc fing 97.7 2.8E-05 6E-10 51.3 3.2 31 43-73 1-32 (39)
40 KOG4628 Predicted E3 ubiquitin 97.6 5.9E-05 1.3E-09 72.5 4.6 77 186-270 211-288 (348)
41 KOG2879 Predicted E3 ubiquitin 97.6 5.5E-05 1.2E-09 70.0 4.0 49 209-260 237-287 (298)
42 KOG3800 Predicted E3 ubiquitin 97.6 4.5E-05 9.7E-10 71.1 3.1 52 213-264 2-55 (300)
43 KOG2177 Predicted E3 ubiquitin 97.6 2.9E-05 6.3E-10 70.1 1.8 46 208-257 10-55 (386)
44 KOG0320 Predicted E3 ubiquitin 97.5 5E-05 1.1E-09 66.2 2.1 35 38-72 129-165 (187)
45 KOG2164 Predicted E3 ubiquitin 97.4 0.00014 3.1E-09 72.4 4.0 33 41-73 187-219 (513)
46 COG5540 RING-finger-containing 97.4 0.00014 3E-09 68.3 3.3 51 209-260 321-372 (374)
47 PF15227 zf-C3HC4_4: zinc fing 97.3 0.00022 4.7E-09 48.1 3.0 31 43-73 1-31 (42)
48 COG5152 Uncharacterized conser 97.3 0.00012 2.5E-09 65.0 2.1 48 208-259 193-240 (259)
49 KOG0824 Predicted E3 ubiquitin 97.3 0.00012 2.5E-09 68.7 1.7 47 211-261 7-54 (324)
50 KOG0826 Predicted E3 ubiquitin 97.2 0.00018 3.8E-09 68.2 1.8 35 38-72 298-333 (357)
51 KOG0311 Predicted E3 ubiquitin 97.1 4.9E-05 1.1E-09 72.5 -2.4 50 209-261 41-91 (381)
52 KOG2817 Predicted E3 ubiquitin 97.0 0.00049 1.1E-08 66.8 3.1 57 210-267 333-392 (394)
53 PF00097 zf-C3HC4: Zinc finger 96.9 0.0011 2.4E-08 43.7 3.3 31 43-73 1-32 (41)
54 PF14447 Prok-RING_4: Prokaryo 96.8 0.00068 1.5E-08 48.2 1.6 34 229-264 21-54 (55)
55 COG5574 PEX10 RING-finger-cont 96.8 0.00087 1.9E-08 61.9 2.6 40 31-70 201-245 (271)
56 KOG4739 Uncharacterized protei 96.7 0.00075 1.6E-08 61.6 1.7 53 211-270 3-55 (233)
57 KOG0802 E3 ubiquitin ligase [P 96.7 0.0012 2.5E-08 67.7 3.0 58 210-267 290-348 (543)
58 PF12861 zf-Apc11: Anaphase-pr 96.6 0.0018 3.9E-08 50.3 3.2 34 228-261 47-83 (85)
59 KOG1813 Predicted E3 ubiquitin 96.6 0.00099 2.1E-08 62.4 1.6 66 191-260 217-286 (313)
60 PF13639 zf-RING_2: Ring finge 96.5 0.0023 5.1E-08 43.0 2.9 33 41-73 1-36 (44)
61 KOG4172 Predicted E3 ubiquitin 96.5 0.00031 6.8E-09 49.8 -1.5 49 212-266 8-58 (62)
62 KOG1645 RING-finger-containing 96.4 0.0013 2.9E-08 64.0 1.1 58 211-268 4-64 (463)
63 COG5222 Uncharacterized conser 96.3 0.0021 4.6E-08 60.3 2.4 72 211-285 274-360 (427)
64 KOG0825 PHD Zn-finger protein 96.3 0.001 2.2E-08 69.2 0.2 51 210-261 122-172 (1134)
65 KOG4159 Predicted E3 ubiquitin 96.3 0.0024 5.1E-08 62.9 2.3 49 209-261 82-130 (398)
66 COG5243 HRD1 HRD ubiquitin lig 96.2 0.0034 7.5E-08 60.6 3.2 50 210-259 286-344 (491)
67 TIGR00599 rad18 DNA repair pro 96.2 0.003 6.5E-08 62.2 2.5 50 24-75 11-61 (397)
68 KOG0297 TNF receptor-associate 96.1 0.0023 5.1E-08 62.9 1.5 56 208-266 18-73 (391)
69 KOG1814 Predicted E3 ubiquitin 96.1 0.0039 8.4E-08 60.9 2.7 48 209-257 182-237 (445)
70 COG5109 Uncharacterized conser 96.0 0.0042 9.1E-08 58.8 2.5 57 210-267 335-394 (396)
71 PF05290 Baculo_IE-1: Baculovi 95.8 0.0091 2E-07 49.9 3.3 50 210-262 79-134 (140)
72 KOG0289 mRNA splicing factor [ 95.7 0.0062 1.3E-07 59.9 2.4 31 42-72 2-33 (506)
73 KOG0827 Predicted E3 ubiquitin 95.7 0.0071 1.5E-07 58.7 2.6 56 210-265 3-61 (465)
74 smart00184 RING Ring finger. E 95.6 0.0072 1.6E-07 37.9 1.8 30 43-72 1-30 (39)
75 PF14570 zf-RING_4: RING/Ubox 95.6 0.0094 2E-07 41.4 2.3 47 214-260 1-48 (48)
76 KOG2660 Locus-specific chromos 95.3 0.0064 1.4E-07 57.9 0.7 49 210-261 14-62 (331)
77 PF13920 zf-C3HC4_3: Zinc fing 95.2 0.021 4.5E-07 39.4 3.1 32 41-72 3-35 (50)
78 KOG0289 mRNA splicing factor [ 95.2 0.016 3.4E-07 57.2 3.2 58 212-272 1-58 (506)
79 KOG4265 Predicted E3 ubiquitin 95.1 0.018 3.8E-07 55.5 3.3 49 209-261 288-337 (349)
80 PHA02929 N1R/p28-like protein; 95.1 0.014 3E-07 53.8 2.4 33 40-72 174-214 (238)
81 KOG1002 Nucleotide excision re 95.1 0.014 3E-07 58.8 2.5 51 208-262 533-588 (791)
82 KOG0828 Predicted E3 ubiquitin 95.0 0.012 2.6E-07 58.7 1.9 50 211-260 571-634 (636)
83 PF13445 zf-RING_UBOX: RING-ty 94.9 0.023 4.9E-07 38.5 2.5 30 43-73 1-34 (43)
84 KOG0804 Cytoplasmic Zn-finger 94.8 0.014 3E-07 57.7 1.7 50 209-260 173-222 (493)
85 KOG4367 Predicted Zn-finger pr 94.7 0.055 1.2E-06 53.5 5.5 66 209-278 2-79 (699)
86 PF10367 Vps39_2: Vacuolar sor 94.5 0.015 3.2E-07 45.9 0.8 30 212-243 79-108 (109)
87 KOG1785 Tyrosine kinase negati 94.4 0.021 4.5E-07 55.7 1.9 54 211-268 369-424 (563)
88 cd00162 RING RING-finger (Real 94.1 0.033 7.2E-07 36.1 1.8 31 42-72 1-32 (45)
89 COG5194 APC11 Component of SCF 94.0 0.067 1.5E-06 41.0 3.6 49 212-260 32-81 (88)
90 COG5175 MOT2 Transcriptional r 94.0 0.037 8E-07 53.1 2.6 55 211-265 14-69 (480)
91 KOG2932 E3 ubiquitin ligase in 93.8 0.032 7E-07 52.8 1.8 45 212-261 91-135 (389)
92 COG5220 TFB3 Cdk activating ki 93.5 0.02 4.2E-07 52.5 -0.2 51 211-262 10-66 (314)
93 smart00744 RINGv The RING-vari 93.4 0.11 2.4E-06 36.0 3.5 42 213-256 1-49 (49)
94 KOG4692 Predicted E3 ubiquitin 93.1 0.051 1.1E-06 52.4 1.9 47 210-260 421-467 (489)
95 PF11793 FANCL_C: FANCL C-term 93.1 0.012 2.6E-07 44.0 -1.9 49 212-260 3-66 (70)
96 PF02891 zf-MIZ: MIZ/SP-RING z 93.1 0.044 9.6E-07 38.3 1.1 43 212-258 3-50 (50)
97 KOG1001 Helicase-like transcri 92.7 0.027 5.8E-07 59.1 -0.6 51 212-267 455-507 (674)
98 KOG1571 Predicted E3 ubiquitin 92.1 0.076 1.6E-06 51.2 1.6 44 210-260 304-347 (355)
99 KOG1734 Predicted RING-contain 92.1 0.044 9.6E-07 51.0 0.0 50 212-262 225-283 (328)
100 PF14634 zf-RING_5: zinc-RING 91.7 0.096 2.1E-06 35.2 1.3 30 42-71 1-33 (44)
101 PF12678 zf-rbx1: RING-H2 zinc 91.4 0.18 3.9E-06 37.9 2.7 34 41-74 20-66 (73)
102 KOG1039 Predicted E3 ubiquitin 91.2 0.12 2.6E-06 50.1 2.0 51 210-260 160-221 (344)
103 KOG1813 Predicted E3 ubiquitin 90.8 0.13 2.7E-06 48.6 1.7 42 30-72 232-273 (313)
104 KOG4275 Predicted E3 ubiquitin 90.3 0.036 7.8E-07 52.1 -2.3 42 211-260 300-342 (350)
105 KOG1940 Zn-finger protein [Gen 90.1 0.16 3.6E-06 47.7 1.8 48 210-257 157-204 (276)
106 KOG0978 E3 ubiquitin ligase in 89.9 0.15 3.2E-06 53.5 1.4 36 37-72 640-675 (698)
107 KOG1002 Nucleotide excision re 89.1 0.12 2.6E-06 52.3 0.0 36 38-73 534-569 (791)
108 KOG4159 Predicted E3 ubiquitin 88.5 0.2 4.4E-06 49.4 1.2 75 38-117 83-157 (398)
109 COG5236 Uncharacterized conser 88.4 0.47 1E-05 45.8 3.5 47 209-259 59-107 (493)
110 KOG2177 Predicted E3 ubiquitin 88.0 0.16 3.5E-06 45.6 0.2 34 38-71 11-44 (386)
111 PF14446 Prok-RING_1: Prokaryo 88.0 0.72 1.6E-05 32.8 3.4 47 210-260 4-52 (54)
112 KOG2979 Protein involved in DN 88.0 0.26 5.7E-06 45.6 1.5 46 210-258 175-222 (262)
113 KOG4185 Predicted E3 ubiquitin 87.9 0.27 5.8E-06 46.2 1.6 48 212-259 4-54 (296)
114 PF05883 Baculo_RING: Baculovi 87.9 0.39 8.4E-06 40.4 2.3 43 211-254 26-74 (134)
115 PHA02524 43A DNA polymerase su 86.8 1.8 3.9E-05 44.1 6.8 42 49-90 436-483 (498)
116 KOG2114 Vacuolar assembly/sort 86.7 3 6.5E-05 44.7 8.5 41 213-259 842-882 (933)
117 KOG3002 Zn finger protein [Gen 86.4 0.59 1.3E-05 44.6 3.0 46 210-261 47-92 (299)
118 KOG4642 Chaperone-dependent E3 85.5 0.34 7.4E-06 44.9 0.9 37 36-72 207-243 (284)
119 KOG2169 Zn-finger transcriptio 85.2 0.51 1.1E-05 49.4 2.1 56 208-266 303-362 (636)
120 PF06936 Selenoprotein_S: Sele 84.7 4.9 0.00011 35.9 7.8 36 83-118 94-129 (190)
121 KOG1941 Acetylcholine receptor 84.0 0.54 1.2E-05 46.1 1.5 48 210-257 364-413 (518)
122 PF03854 zf-P11: P-11 zinc fin 83.3 0.73 1.6E-05 31.9 1.5 31 230-260 16-46 (50)
123 cd00350 rubredoxin_like Rubred 82.9 1.1 2.4E-05 28.4 2.2 11 248-258 16-26 (33)
124 PF05605 zf-Di19: Drought indu 82.5 0.45 9.7E-06 33.4 0.3 39 211-260 2-42 (54)
125 KOG2930 SCF ubiquitin ligase, 80.9 1.7 3.8E-05 35.0 3.1 32 228-259 76-107 (114)
126 smart00064 FYVE Protein presen 80.6 0.92 2E-05 33.0 1.3 36 211-246 10-45 (68)
127 COG5219 Uncharacterized conser 80.6 0.82 1.8E-05 49.4 1.4 49 210-260 1468-1523(1525)
128 PF06906 DUF1272: Protein of u 80.6 2.9 6.4E-05 29.9 3.8 49 212-262 6-54 (57)
129 KOG2979 Protein involved in DN 80.3 0.7 1.5E-05 42.9 0.7 31 42-72 178-209 (262)
130 PHA02825 LAP/PHD finger-like p 79.4 2.3 5E-05 36.8 3.6 60 210-277 7-73 (162)
131 PF14569 zf-UDP: Zinc-binding 79.4 1.8 4E-05 33.0 2.6 52 210-261 8-63 (80)
132 KOG3161 Predicted E3 ubiquitin 78.9 0.74 1.6E-05 47.8 0.5 41 211-253 11-51 (861)
133 cd00065 FYVE FYVE domain; Zinc 78.8 1.2 2.5E-05 31.2 1.4 34 212-245 3-36 (57)
134 COG5222 Uncharacterized conser 78.3 0.87 1.9E-05 43.2 0.7 34 41-74 275-309 (427)
135 KOG1001 Helicase-like transcri 78.0 0.92 2E-05 47.9 0.9 31 41-72 455-485 (674)
136 PHA02926 zinc finger-like prot 78.0 1.1 2.5E-05 40.8 1.4 32 41-72 171-211 (242)
137 KOG3039 Uncharacterized conser 77.7 1.4 3.1E-05 40.8 1.9 31 212-246 44-74 (303)
138 COG5152 Uncharacterized conser 77.6 0.76 1.6E-05 41.2 0.1 32 38-70 195-226 (259)
139 KOG0298 DEAD box-containing he 76.5 0.81 1.8E-05 50.8 -0.0 47 210-259 1152-1198(1394)
140 COG5432 RAD18 RING-finger-cont 76.4 1 2.2E-05 42.6 0.6 35 41-75 26-60 (391)
141 PHA02862 5L protein; Provision 76.3 2.3 5E-05 36.3 2.6 44 212-260 3-53 (156)
142 KOG0287 Postreplication repair 75.9 0.85 1.8E-05 44.0 -0.0 33 42-74 25-57 (442)
143 PF01363 FYVE: FYVE zinc finge 75.5 0.81 1.8E-05 33.4 -0.2 34 211-244 9-42 (69)
144 PF14835 zf-RING_6: zf-RING of 75.1 1.4 3E-05 32.5 0.9 31 41-71 8-39 (65)
145 KOG2068 MOT2 transcription fac 74.0 2.5 5.4E-05 40.6 2.6 51 211-261 249-299 (327)
146 PLN02189 cellulose synthase 74.0 2.7 5.9E-05 46.1 3.1 51 210-260 33-87 (1040)
147 KOG1493 Anaphase-promoting com 73.9 0.99 2.1E-05 34.4 -0.1 33 229-261 47-82 (84)
148 KOG1952 Transcription factor N 73.5 2.5 5.3E-05 45.3 2.6 52 209-260 189-247 (950)
149 PLN02195 cellulose synthase A 71.8 4.5 9.7E-05 44.2 4.1 53 210-262 5-61 (977)
150 KOG2034 Vacuolar sorting prote 71.8 2.4 5.1E-05 45.6 2.0 36 210-247 816-851 (911)
151 KOG0297 TNF receptor-associate 70.9 2.6 5.6E-05 41.6 2.0 37 37-73 18-55 (391)
152 KOG1428 Inhibitor of type V ad 69.4 3.6 7.8E-05 46.8 2.7 52 209-261 3484-3545(3738)
153 TIGR00373 conserved hypothetic 69.3 3.4 7.4E-05 35.6 2.2 34 209-261 107-140 (158)
154 COG1592 Rubrerythrin [Energy p 69.1 3.5 7.6E-05 36.0 2.2 11 248-258 148-158 (166)
155 PRK06266 transcription initiat 68.7 4.2 9.1E-05 35.8 2.6 35 209-262 115-149 (178)
156 PF10571 UPF0547: Uncharacteri 68.0 2.6 5.7E-05 25.4 0.8 12 213-224 2-13 (26)
157 KOG0883 Cyclophilin type, U bo 67.7 4.8 0.0001 39.7 3.0 54 211-268 40-93 (518)
158 PF04710 Pellino: Pellino; In 67.3 1.8 3.9E-05 42.6 0.0 56 210-267 327-409 (416)
159 PHA03096 p28-like protein; Pro 67.3 3.6 7.8E-05 39.0 2.0 36 212-247 179-218 (284)
160 KOG3842 Adaptor protein Pellin 66.8 7.7 0.00017 37.3 4.1 57 209-267 339-422 (429)
161 PLN02436 cellulose synthase A 66.7 4.7 0.0001 44.5 3.0 51 210-260 35-89 (1094)
162 KOG1812 Predicted E3 ubiquitin 65.0 3 6.5E-05 41.1 1.1 54 210-263 145-206 (384)
163 PF07975 C1_4: TFIIH C1-like d 63.1 9.7 0.00021 26.8 3.1 26 230-256 24-50 (51)
164 PF10186 Atg14: UV radiation r 62.6 35 0.00075 31.4 7.7 40 43-90 2-41 (302)
165 KOG4445 Uncharacterized conser 62.3 2.9 6.3E-05 39.8 0.4 51 210-261 114-187 (368)
166 PF07191 zinc-ribbons_6: zinc- 62.2 0.65 1.4E-05 34.8 -3.2 60 212-285 2-63 (70)
167 PF09986 DUF2225: Uncharacteri 62.2 2 4.3E-05 38.9 -0.7 57 210-269 4-68 (214)
168 PF14353 CpXC: CpXC protein 62.1 11 0.00024 30.8 3.9 46 212-261 2-50 (128)
169 COG3813 Uncharacterized protei 61.0 10 0.00022 28.7 3.0 50 213-264 7-56 (84)
170 PF08746 zf-RING-like: RING-li 60.7 6.6 0.00014 26.4 1.8 41 214-255 1-43 (43)
171 KOG1815 Predicted E3 ubiquitin 60.3 11 0.00023 37.8 4.1 36 209-247 68-103 (444)
172 cd00730 rubredoxin Rubredoxin; 60.2 4.8 0.0001 28.1 1.1 42 211-258 1-43 (50)
173 PLN02638 cellulose synthase A 60.1 7.5 0.00016 43.0 3.1 50 211-260 17-70 (1079)
174 PF10235 Cript: Microtubule-as 59.5 5.1 0.00011 31.5 1.3 36 212-260 45-80 (90)
175 PHA02768 hypothetical protein; 59.3 12 0.00026 26.7 3.1 48 211-270 5-53 (55)
176 cd00729 rubredoxin_SM Rubredox 59.2 7.8 0.00017 24.7 1.9 9 250-258 19-27 (34)
177 PF12906 RINGv: RING-variant d 59.0 7 0.00015 26.7 1.7 40 214-255 1-47 (47)
178 PF04423 Rad50_zn_hook: Rad50 58.8 3 6.4E-05 29.2 -0.1 13 249-261 20-32 (54)
179 cd05533 POLBc_delta DNA polyme 58.7 20 0.00042 35.4 5.5 33 52-84 56-96 (393)
180 PRK11595 DNA utilization prote 57.9 9.2 0.0002 34.6 2.9 39 213-260 7-45 (227)
181 PF15616 TerY-C: TerY-C metal 57.3 6.5 0.00014 33.0 1.6 42 209-260 75-116 (131)
182 PF10367 Vps39_2: Vacuolar sor 56.4 6.8 0.00015 30.5 1.6 30 38-67 76-107 (109)
183 PLN02915 cellulose synthase A 56.1 13 0.00027 41.2 3.9 51 210-260 14-68 (1044)
184 PF09805 Nop25: Nucleolar prot 55.7 76 0.0017 26.6 7.9 54 59-112 12-66 (137)
185 PF00301 Rubredoxin: Rubredoxi 55.7 3.6 7.7E-05 28.4 -0.2 12 247-258 32-43 (47)
186 PRK05978 hypothetical protein; 54.4 7.6 0.00017 33.3 1.6 33 211-262 33-65 (148)
187 PF13240 zinc_ribbon_2: zinc-r 53.7 2.1 4.5E-05 25.0 -1.4 8 251-258 15-22 (23)
188 KOG0824 Predicted E3 ubiquitin 52.9 6 0.00013 37.7 0.8 33 41-73 8-40 (324)
189 smart00531 TFIIE Transcription 51.9 7.3 0.00016 33.0 1.1 38 209-261 97-135 (147)
190 KOG2462 C2H2-type Zn-finger pr 51.7 4.7 0.0001 37.9 -0.1 53 209-261 159-227 (279)
191 KOG2807 RNA polymerase II tran 51.4 8 0.00017 37.3 1.4 66 184-256 307-374 (378)
192 KOG3970 Predicted E3 ubiquitin 51.3 14 0.0003 33.9 2.8 48 211-260 50-105 (299)
193 KOG2462 C2H2-type Zn-finger pr 51.1 16 0.00036 34.3 3.4 54 208-261 127-199 (279)
194 PF00096 zf-C2H2: Zinc finger, 51.0 7.5 0.00016 21.7 0.8 13 212-224 1-13 (23)
195 KOG0825 PHD Zn-finger protein 50.7 9.1 0.0002 41.0 1.8 50 210-259 95-153 (1134)
196 COG1773 Rubredoxin [Energy pro 50.2 8.7 0.00019 27.5 1.1 50 211-267 3-52 (55)
197 PF13894 zf-C2H2_4: C2H2-type 49.8 8.3 0.00018 21.2 0.8 13 212-224 1-13 (24)
198 TIGR01562 FdhE formate dehydro 49.6 5.8 0.00013 38.0 0.2 22 236-257 211-232 (305)
199 PF00412 LIM: LIM domain; Int 49.5 19 0.00041 24.7 2.8 32 211-245 26-57 (58)
200 PLN02400 cellulose synthase 49.5 11 0.00025 41.7 2.4 51 210-260 35-89 (1085)
201 PRK00464 nrdR transcriptional 48.9 7.8 0.00017 33.4 0.8 38 213-260 2-39 (154)
202 PLN02248 cellulose synthase-li 48.8 15 0.00033 40.9 3.1 36 232-267 149-184 (1135)
203 PF13465 zf-H2C2_2: Zinc-finge 47.9 12 0.00026 22.1 1.3 15 209-223 12-26 (26)
204 TIGR00622 ssl1 transcription f 47.5 17 0.00037 29.7 2.6 76 176-257 16-111 (112)
205 KOG0309 Conserved WD40 repeat- 44.9 16 0.00035 39.0 2.5 44 209-254 1026-1069(1081)
206 PF13248 zf-ribbon_3: zinc-rib 44.9 3.8 8.1E-05 24.5 -1.2 9 250-258 17-25 (26)
207 KOG4709 Uncharacterized conser 44.8 1.4E+02 0.003 26.9 8.0 46 60-105 29-75 (217)
208 KOG0396 Uncharacterized conser 44.8 7.7 0.00017 37.9 0.2 79 177-267 306-386 (389)
209 PHA02528 43 DNA polymerase; Pr 44.6 41 0.00089 36.9 5.7 33 55-87 442-480 (881)
210 PF04641 Rtf2: Rtf2 RING-finge 44.5 25 0.00053 32.7 3.5 56 210-268 33-92 (260)
211 PF04216 FdhE: Protein involve 43.9 3.7 7.9E-05 38.7 -2.1 24 235-258 197-220 (290)
212 PF07648 Kazal_2: Kazal-type s 43.7 20 0.00043 22.9 2.0 21 51-71 6-26 (42)
213 KOG3088 Secretory carrier memb 43.4 41 0.00088 32.1 4.7 36 73-110 57-92 (313)
214 PRK14559 putative protein seri 43.2 6.4 0.00014 41.5 -0.7 14 248-261 40-53 (645)
215 KOG0801 Predicted E3 ubiquitin 42.7 16 0.00036 31.9 1.8 67 183-266 121-194 (205)
216 PRK12496 hypothetical protein; 42.5 17 0.00038 31.4 2.0 29 212-262 128-156 (164)
217 PTZ00303 phosphatidylinositol 42.3 11 0.00024 40.5 0.8 34 212-245 461-499 (1374)
218 PF12773 DZR: Double zinc ribb 42.3 22 0.00048 24.0 2.2 13 249-261 29-41 (50)
219 KOG1703 Adaptor protein Enigma 42.2 30 0.00066 35.0 4.0 45 211-260 389-433 (479)
220 KOG1829 Uncharacterized conser 42.1 11 0.00023 39.3 0.7 47 209-260 509-561 (580)
221 PF10013 DUF2256: Uncharacteri 41.3 15 0.00033 24.8 1.1 13 248-260 7-19 (42)
222 COG2093 DNA-directed RNA polym 40.9 10 0.00022 27.8 0.3 28 249-276 18-49 (64)
223 PF06416 DUF1076: Protein of u 40.2 41 0.00089 27.5 3.6 55 209-266 38-97 (113)
224 PRK00247 putative inner membra 39.8 1.4E+02 0.003 30.1 8.1 14 76-89 348-361 (429)
225 PF06676 DUF1178: Protein of u 39.8 34 0.00073 29.4 3.3 28 232-259 9-42 (148)
226 COG4357 Zinc finger domain con 39.4 20 0.00043 28.6 1.7 72 173-261 10-92 (105)
227 KOG0311 Predicted E3 ubiquitin 39.2 3.9 8.5E-05 39.7 -2.7 33 40-72 43-76 (381)
228 PRK12495 hypothetical protein; 38.7 1.2E+02 0.0027 27.7 6.8 14 210-223 57-70 (226)
229 KOG1029 Endocytic adaptor prot 38.7 70 0.0015 34.6 6.0 8 260-267 713-720 (1118)
230 PF10915 DUF2709: Protein of u 38.1 29 0.00063 31.2 2.7 37 210-258 86-122 (238)
231 PF09889 DUF2116: Uncharacteri 37.8 20 0.00044 25.9 1.4 14 248-261 2-15 (59)
232 TIGR00627 tfb4 transcription f 37.6 26 0.00056 33.1 2.5 10 250-259 270-279 (279)
233 KOG1812 Predicted E3 ubiquitin 37.3 21 0.00045 35.3 1.9 44 211-256 306-352 (384)
234 KOG1729 FYVE finger containing 37.3 7.5 0.00016 36.9 -1.2 50 211-260 168-225 (288)
235 PF12874 zf-met: Zinc-finger o 36.7 17 0.00037 20.7 0.8 13 212-224 1-13 (25)
236 PF13025 DUF3886: Protein of u 35.7 1.7E+02 0.0038 21.9 6.1 43 66-113 17-59 (70)
237 KOG4218 Nuclear hormone recept 35.5 22 0.00048 34.7 1.7 25 210-241 14-38 (475)
238 PRK06393 rpoE DNA-directed RNA 35.1 24 0.00052 26.0 1.4 28 248-275 16-47 (64)
239 PF13025 DUF3886: Protein of u 35.0 1.5E+02 0.0033 22.2 5.7 27 77-103 17-43 (70)
240 smart00280 KAZAL Kazal type se 34.7 27 0.00058 23.2 1.6 22 50-71 9-30 (46)
241 cd05536 POLBc_B3 DNA polymeras 34.6 80 0.0017 30.9 5.5 32 54-85 53-90 (371)
242 COG4338 Uncharacterized protei 34.6 11 0.00024 26.2 -0.3 13 248-260 11-23 (54)
243 PRK03564 formate dehydrogenase 34.4 18 0.00039 34.7 0.9 12 211-222 212-223 (309)
244 KOG1819 FYVE finger-containing 34.1 84 0.0018 32.3 5.5 32 212-243 902-933 (990)
245 COG1645 Uncharacterized Zn-fin 34.0 12 0.00026 31.4 -0.3 19 212-238 29-47 (131)
246 PRK06386 replication factor A; 33.4 30 0.00065 33.9 2.3 25 250-274 249-275 (358)
247 PRK04023 DNA polymerase II lar 33.0 27 0.00059 38.6 2.0 54 209-268 624-682 (1121)
248 COG1675 TFA1 Transcription ini 32.7 35 0.00076 30.1 2.4 35 209-262 111-145 (176)
249 KOG0802 E3 ubiquitin ligase [P 32.4 25 0.00054 36.2 1.6 34 40-73 291-329 (543)
250 KOG1100 Predicted E3 ubiquitin 32.2 20 0.00044 32.3 0.8 39 214-260 161-200 (207)
251 PRK05452 anaerobic nitric oxid 32.0 27 0.00059 35.3 1.8 55 208-269 422-476 (479)
252 KOG2879 Predicted E3 ubiquitin 31.9 37 0.0008 32.1 2.5 34 40-73 239-273 (298)
253 KOG2042 Ubiquitin fusion degra 31.8 34 0.00073 37.6 2.5 55 209-266 868-922 (943)
254 PF13815 Dzip-like_N: Iguana/D 31.6 2.4E+02 0.0051 22.8 7.0 52 38-90 37-90 (118)
255 PF12861 zf-Apc11: Anaphase-pr 31.5 29 0.00064 27.0 1.5 38 38-75 29-69 (85)
256 PF12171 zf-C2H2_jaz: Zinc-fin 31.4 27 0.00058 20.5 1.0 13 212-224 2-14 (27)
257 PF04270 Strep_his_triad: Stre 31.4 24 0.00051 25.1 0.9 15 55-69 2-16 (53)
258 KOG4552 Vitamin-D-receptor int 31.3 2E+02 0.0043 26.3 6.9 48 66-113 47-95 (272)
259 PF08271 TF_Zn_Ribbon: TFIIB z 30.5 41 0.0009 22.2 1.9 7 213-219 2-8 (43)
260 COG5627 MMS21 DNA repair prote 30.4 22 0.00047 32.9 0.7 32 41-72 190-222 (275)
261 PF00050 Kazal_1: Kazal-type s 30.1 33 0.00071 23.3 1.4 20 49-68 10-29 (48)
262 PRK11088 rrmA 23S rRNA methylt 30.1 31 0.00068 31.7 1.8 11 212-222 3-13 (272)
263 PF10764 Gin: Inhibitor of sig 29.7 52 0.0011 22.5 2.3 32 213-249 1-32 (46)
264 KOG1814 Predicted E3 ubiquitin 29.5 1.1E+02 0.0024 30.6 5.4 17 230-246 389-405 (445)
265 COG5533 UBP5 Ubiquitin C-termi 29.3 47 0.001 32.2 2.7 52 210-261 234-296 (415)
266 PF14353 CpXC: CpXC protein 29.2 48 0.001 27.0 2.6 57 176-233 2-60 (128)
267 PRK08351 DNA-directed RNA poly 29.1 31 0.00068 25.1 1.2 28 248-275 14-45 (61)
268 smart00734 ZnF_Rad18 Rad18-lik 28.7 20 0.00043 21.5 0.1 10 251-260 3-12 (26)
269 cd01327 KAZAL_PSTI Kazal-type 28.5 39 0.00084 22.7 1.6 19 51-69 9-27 (45)
270 KOG3268 Predicted E3 ubiquitin 28.1 47 0.001 29.5 2.3 74 181-260 139-228 (234)
271 COG4068 Uncharacterized protei 27.9 34 0.00075 24.8 1.2 16 248-263 7-22 (64)
272 KOG3579 Predicted E3 ubiquitin 27.9 31 0.00066 32.8 1.2 38 210-248 267-305 (352)
273 PF13913 zf-C2HC_2: zinc-finge 27.8 14 0.00031 21.7 -0.6 11 251-261 4-14 (25)
274 PF13717 zinc_ribbon_4: zinc-r 27.8 51 0.0011 21.2 1.9 10 212-221 3-12 (36)
275 COG5183 SSM4 Protein involved 27.5 43 0.00093 36.3 2.3 55 209-265 10-71 (1175)
276 PF07503 zf-HYPF: HypF finger; 27.5 55 0.0012 21.1 2.0 24 237-260 1-32 (35)
277 PF09986 DUF2225: Uncharacteri 27.5 19 0.00041 32.5 -0.2 15 248-262 4-18 (214)
278 PRK14714 DNA polymerase II lar 26.8 31 0.00068 39.0 1.3 54 211-268 667-728 (1337)
279 PF10272 Tmpp129: Putative tra 26.7 91 0.002 30.6 4.3 29 238-266 316-357 (358)
280 PF09943 DUF2175: Uncharacteri 26.7 57 0.0012 26.2 2.4 34 211-246 2-35 (101)
281 PF13719 zinc_ribbon_5: zinc-r 26.6 43 0.00092 21.6 1.4 11 212-222 3-13 (37)
282 KOG2113 Predicted RNA binding 26.4 23 0.00049 34.1 0.1 56 221-279 143-200 (394)
283 KOG2660 Locus-specific chromos 26.2 18 0.00039 34.9 -0.6 38 36-73 11-49 (331)
284 PF12756 zf-C2H2_2: C2H2 type 26.0 17 0.00038 27.3 -0.6 49 213-261 1-62 (100)
285 COG5189 SFP1 Putative transcri 25.4 25 0.00055 33.9 0.2 53 210-262 348-411 (423)
286 PF10669 Phage_Gp23: Protein g 25.4 2.3E+02 0.005 22.7 5.5 36 73-112 39-74 (121)
287 KOG2231 Predicted E3 ubiquitin 25.3 45 0.00097 35.3 2.0 44 213-260 2-52 (669)
288 PHA00732 hypothetical protein 25.3 21 0.00046 27.2 -0.3 37 212-260 2-38 (79)
289 PF15482 CCER1: Coiled-coil do 25.3 88 0.0019 27.7 3.5 28 67-94 184-211 (214)
290 COG5540 RING-finger-containing 25.2 50 0.0011 31.8 2.1 34 42-75 325-361 (374)
291 PF10197 Cir_N: N-terminal dom 24.9 2E+02 0.0042 18.7 4.3 17 79-95 8-24 (37)
292 COG0417 PolB DNA polymerase el 24.7 1.2E+02 0.0027 32.7 5.3 50 40-89 438-496 (792)
293 KOG1842 FYVE finger-containing 24.6 21 0.00044 35.9 -0.6 36 210-245 179-214 (505)
294 KOG4362 Transcriptional regula 24.4 21 0.00045 37.8 -0.6 48 211-262 21-71 (684)
295 KOG1696 60s ribosomal protein 24.3 2.4E+02 0.0051 24.9 5.9 34 56-89 126-160 (193)
296 PF08432 Vfa1: AAA-ATPase Vps4 24.1 1.8E+02 0.0039 25.5 5.4 19 41-59 14-32 (182)
297 smart00746 TRASH metallochaper 24.0 66 0.0014 18.5 1.9 21 252-272 1-22 (39)
298 PF14471 DUF4428: Domain of un 23.9 75 0.0016 22.1 2.3 30 213-245 1-30 (51)
299 KOG1645 RING-finger-containing 23.7 2E+02 0.0044 28.8 6.0 32 41-72 5-41 (463)
300 PF11169 DUF2956: Protein of u 23.5 2.2E+02 0.0048 23.0 5.1 27 77-103 31-57 (103)
301 KOG1701 Focal adhesion adaptor 23.5 70 0.0015 32.1 2.8 60 211-274 360-423 (468)
302 PRK06569 F0F1 ATP synthase sub 23.1 4.4E+02 0.0095 22.8 7.4 41 74-114 56-96 (155)
303 COG2174 RPL34A Ribosomal prote 22.9 69 0.0015 25.3 2.1 18 230-247 66-83 (93)
304 TIGR03830 CxxCG_CxxCG_HTH puta 22.6 20 0.00043 28.8 -0.9 9 251-259 33-41 (127)
305 PF13019 Telomere_Sde2: Telome 22.3 1.5E+02 0.0033 25.8 4.4 13 31-43 102-114 (162)
306 PF06750 DiS_P_DiS: Bacterial 22.3 41 0.00089 26.3 0.8 19 249-267 33-51 (92)
307 COG1997 RPL43A Ribosomal prote 22.0 60 0.0013 25.4 1.7 10 211-220 35-44 (89)
308 PF09866 DUF2093: Uncharacteri 21.9 21 0.00045 24.1 -0.7 21 171-191 3-23 (42)
309 TIGR03826 YvyF flagellar opero 21.8 44 0.00095 28.3 1.0 23 213-244 5-27 (137)
310 smart00451 ZnF_U1 U1-like zinc 21.7 50 0.0011 20.2 1.0 15 210-224 2-16 (35)
311 PF09538 FYDLN_acid: Protein o 21.6 52 0.0011 26.7 1.3 14 210-223 8-21 (108)
312 COG1379 PHP family phosphoeste 21.4 50 0.0011 32.1 1.4 25 237-261 248-277 (403)
313 PF06689 zf-C4_ClpX: ClpX C4-t 21.3 1.1E+02 0.0024 20.1 2.7 33 212-245 2-34 (41)
314 PF02318 FYVE_2: FYVE-type zin 21.1 43 0.00094 27.2 0.8 47 211-257 54-102 (118)
315 PF01667 Ribosomal_S27e: Ribos 21.0 69 0.0015 22.9 1.7 28 212-239 8-38 (55)
316 cd05534 POLBc_zeta DNA polymer 20.9 1.7E+02 0.0037 29.5 5.1 33 54-86 113-153 (451)
317 PF13912 zf-C2H2_6: C2H2-type 20.7 49 0.0011 19.1 0.8 13 212-224 2-14 (27)
318 COG1422 Predicted membrane pro 20.5 3.2E+02 0.007 24.7 6.2 29 66-94 62-93 (201)
319 PRK07218 replication factor A; 20.5 73 0.0016 32.0 2.4 25 250-274 310-336 (423)
320 COG3364 Zn-ribbon containing p 20.4 47 0.001 26.8 0.8 24 230-257 5-28 (112)
321 COG1655 Uncharacterized protei 20.4 63 0.0014 29.9 1.7 19 245-263 15-33 (267)
322 KOG1701 Focal adhesion adaptor 20.1 37 0.00079 34.0 0.2 33 211-246 302-334 (468)
323 PF12660 zf-TFIIIC: Putative z 20.0 56 0.0012 25.9 1.2 31 40-71 14-48 (99)
No 1
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.3e-92 Score=628.79 Aligned_cols=292 Identities=47% Similarity=0.768 Sum_probs=264.8
Q ss_pred CCCccccCCCCCccccHHHHhh----cCCCCcccccCCCCcCCCcceecccCCCCCceecCCCceeehhhHHHHHHHhhH
Q 022029 1 MPQRHSKNNNDLAFFTYDEKRK----LGYGTQKERLGKDSIKPFDACCLCLKPFIDPLCCQKGHIYCKECILECLLSQKK 76 (304)
Q Consensus 1 m~~rHsKn~ta~~~~Ty~Er~~----~~~Gt~~~Rlg~ds~~~F~~C~LcL~p~~dPV~t~~G~lyckEcIle~ll~qkk 76 (304)
|| ||+|||||++||||||+++ +|||||.+|||+||+++||||+|||+|++||||||+||||||||||||||+|||
T Consensus 1 mt-RH~kN~ta~avyTY~EkkkdaaasGYGTq~~RLgrDsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ilaqKk 79 (303)
T KOG3039|consen 1 MT-RHGKNCTAGAVYTYHEKKKDAAASGYGTQRERLGRDSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILAQKK 79 (303)
T ss_pred CC-ccccCCccceeEeehhhcchhhhcCcchhhhhhcccccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHHHHH
Confidence 87 9999999999999999999 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC--C--CCCCCCCCCcCCCCccccchHHHHHhh
Q 022029 77 DIQRKLVAHAAQQKQEKEEEEERLMLQKARELDAFDQQNHGAVPQYND--R--NHSQDKNGFHGANSVKVTSYEEEALRT 152 (304)
Q Consensus 77 ei~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~k~ 152 (304)
+|+|++++||+|.++++.++++++..+.++.+++|.+.+....+.... + ...-++..+++.+.......++++++.
T Consensus 80 e~arrlkayekqrr~eed~e~qra~~q~~~~~~eF~~~e~~~~s~al~r~~~~~~ae~~a~~~~~~~~~~sn~~~d~~k~ 159 (303)
T KOG3039|consen 80 EIARRLKAYEKQRRAEEDKEEQRAMSQKARRLDEFDQQESTPESSALPRNPDTNSAEDAASFHGANSVSTSNMEEDKLKT 159 (303)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHhhccccccccccCCCCcchhhhccCccccCCccccCcccccccc
Confidence 999999999999999999999999999999999999988865533221 2 122234556666666677778889999
Q ss_pred ccccccCCCCCCCC-ccccCCCCCccCCCCCCcCCCCCceeeecccCCCc--ccccCCCCCceeccCccccccCCcceEE
Q 022029 153 MKAFWLPSATPEAP-VKVEAPSASTICPEGKEKLKLKSLFPVYFTEDKSE--EKKSSSNDKSFICPSCKVTLTNTLSLVA 229 (304)
Q Consensus 153 l~sFWlps~tp~a~-~~~~kp~~~~~CP~sg~~l~lKDLi~l~f~~~~~~--~~~~~~~~~~~~CPIc~k~~~~~~~~v~ 229 (304)
||||||||+||+|. +++++|+.+++||++|+||+||||++|+|++.+++ ...+.+...+|+||||.++++|.+.+++
T Consensus 160 lpsFWlPs~tP~A~atklekP~~~v~CP~s~kplklkdL~~VkFT~l~s~~~et~l~a~s~ryiCpvtrd~LtNt~~ca~ 239 (303)
T KOG3039|consen 160 LPSFWLPSLTPTAAATKLEKPSTTVVCPVSGKPLKLKDLFAVKFTPLNSEETETKLIAASKRYICPVTRDTLTNTTPCAV 239 (303)
T ss_pred ccceecCccCchhhhhcccCCCceeeccCCCCccchhhcceeeeeecCCchhhhhhhhhccceecccchhhhcCccceEE
Confidence 99999999999988 78999999999999999999999999999997653 3334455678999999999999999999
Q ss_pred EccCCccchHHHHHHHhhcCCCCCCCCCCCCCCCceEecCCCccccccCCeeeeeecccccccc
Q 022029 230 LSSCGHVFCKKCADKFMAVDKVCLVCNKPCKERNLVNVEKGGTGFAAHGDRLEARDFKHLGSGS 293 (304)
Q Consensus 230 l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~diI~L~~~gtgfaa~g~~~eak~~~~~~~~~ 293 (304)
+++||||||++|+++||..++.||+|+++++++|||.||++|||||.+|..++||.+||+|.+|
T Consensus 240 Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~LqrGGTGfa~tndhlqAke~rp~lq~~ 303 (303)
T KOG3039|consen 240 LRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIGLQRGGTGFAETNDHLQAKEYRPLLQAS 303 (303)
T ss_pred eccCCcEeeHHHHHHhccccccccCCCCcCcccceEeeecccccccccchhhhhhhhcccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999775
No 2
>PF04641 Rtf2: Rtf2 RING-finger
Probab=99.97 E-value=1e-30 Score=241.92 Aligned_cols=147 Identities=28% Similarity=0.518 Sum_probs=121.2
Q ss_pred cCCCcceecccCCCCCce-ecCCCceeehhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022029 37 IKPFDACCLCLKPFIDPL-CCQKGHIYCKECILECLLSQKKDIQRKLVAHAAQQKQEKEEEEERLMLQKARELDAFDQQN 115 (304)
Q Consensus 37 ~~~F~~C~LcL~p~~dPV-~t~~G~lyckEcIle~ll~qkkei~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~F~~~~ 115 (304)
..+|.+|+|+++|+.+|| +|..|+||+||+||+|||.+++.
T Consensus 31 ~~~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~~~~-------------------------------------- 72 (260)
T PF04641_consen 31 EARWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDKKKN-------------------------------------- 72 (260)
T ss_pred hCCcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhcCcC--------------------------------------
Confidence 478999999999999998 67789999999999999975321
Q ss_pred CCCCCCCCCCCCCCCCCCCcCCCCccccchHHHHHhhccccccCCCCCCCCccccCCCCCccCCCCCCcCCCCCceeeec
Q 022029 116 HGAVPQYNDRNHSQDKNGFHGANSVKVTSYEEEALRTMKAFWLPSATPEAPVKVEAPSASTICPEGKEKLKLKSLFPVYF 195 (304)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~sFWlps~tp~a~~~~~kp~~~~~CP~sg~~l~lKDLi~l~f 195 (304)
...-+...|+.+||||++|+|
T Consensus 73 -----------------------------------------------------------~~~~~~~~hI~~LKDl~~l~~ 93 (260)
T PF04641_consen 73 -----------------------------------------------------------KDLPKTFSHIKSLKDLVELKF 93 (260)
T ss_pred -----------------------------------------------------------CCCccccccccCccceeeEEe
Confidence 001122459999999999999
Q ss_pred ccCCCcccc----cCCCCCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCCCCceEecCCC
Q 022029 196 TEDKSEEKK----SSSNDKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKERNLVNVEKGG 271 (304)
Q Consensus 196 ~~~~~~~~~----~~~~~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~diI~L~~~g 271 (304)
+.+++.... .....+.|+|||+.+.|++.++||||++|||||++++|+++- .++.||+|+++|+..|||+||+.+
T Consensus 94 ~~n~~~~~~~~~~~~~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~Lnp~~ 172 (260)
T PF04641_consen 94 TKNPSYKEEDKSSGDNSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIPLNPPE 172 (260)
T ss_pred EecCccccccccccccCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEEEecCCc
Confidence 998643211 123578899999999999999999999999999999999973 577899999999999999999999
Q ss_pred ccccccCCee
Q 022029 272 TGFAAHGDRL 281 (304)
Q Consensus 272 tgfaa~g~~~ 281 (304)
..+......+
T Consensus 173 ee~~~l~~~~ 182 (260)
T PF04641_consen 173 EELEKLRERM 182 (260)
T ss_pred cHHHHHHHHH
Confidence 8776654333
No 3
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.5e-30 Score=243.83 Aligned_cols=155 Identities=22% Similarity=0.462 Sum_probs=138.4
Q ss_pred CccccCCCCCccccHHHHhhcCCCCcccccC-CCC--cCCCcceecccCCCCCceecCCCceeehhhHHHHHHHhhHHHH
Q 022029 3 QRHSKNNNDLAFFTYDEKRKLGYGTQKERLG-KDS--IKPFDACCLCLKPFIDPLCCQKGHIYCKECILECLLSQKKDIQ 79 (304)
Q Consensus 3 ~rHsKn~ta~~~~Ty~Er~~~~~Gt~~~Rlg-~ds--~~~F~~C~LcL~p~~dPV~t~~G~lyckEcIle~ll~qkkei~ 79 (304)
+.|+|+ .+|+||.||+.. ||+.+..+. +.. -+||++|+|++.|+.||||+.+|.||+-.+|+.||-+
T Consensus 4 kQHqKD---kmylT~tEw~~~-~Ggkk~~~~n~~~FkrLP~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk------ 73 (518)
T KOG0883|consen 4 KQHQKD---KMYLTTTEWKSI-YGGKKDTGENRTQFKRLPFNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK------ 73 (518)
T ss_pred cccccc---ceEEeehhhhhh-cCCCCCCcccccccccCChhhceeccccccCcccccCCcEEeeehhhHHHHH------
Confidence 359999 699999999996 777664432 222 3899999999999999999999999999999999853
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcCCCCccccchHHHHHhhccccccC
Q 022029 80 RKLVAHAAQQKQEKEEEEERLMLQKARELDAFDQQNHGAVPQYNDRNHSQDKNGFHGANSVKVTSYEEEALRTMKAFWLP 159 (304)
Q Consensus 80 r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~sFWlp 159 (304)
T Consensus 74 -------------------------------------------------------------------------------- 73 (518)
T KOG0883|consen 74 -------------------------------------------------------------------------------- 73 (518)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccccCCCCCccCCCCCCcCCCCCceeeecccCCCcccccCCCCCceeccCccccccCCcceEEEccCCccchH
Q 022029 160 SATPEAPVKVEAPSASTICPEGKEKLKLKSLFPVYFTEDKSEEKKSSSNDKSFICPSCKVTLTNTLSLVALSSCGHVFCK 239 (304)
Q Consensus 160 s~tp~a~~~~~kp~~~~~CP~sg~~l~lKDLi~l~f~~~~~~~~~~~~~~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~ 239 (304)
.+..|++|.++..+|||+|+|.+++ +++|+|||.+++|++.++||++++.|+|||+
T Consensus 74 ---------------~g~nP~tG~kl~~~dLIkL~F~Kns---------~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~ 129 (518)
T KOG0883|consen 74 ---------------HGTNPITGQKLDGKDLIKLKFHKNS---------EGEYHCPVLFKVFTRFSHIVAVRTTGNVYSW 129 (518)
T ss_pred ---------------cCCCCCCCCccccccceeeeeccCC---------CCcccCceeeeeecccceEEEEEecCceeeH
Confidence 2678999999999999999999987 5789999999999999999999999999999
Q ss_pred HHHHHH-hh-cCCCCCCCCCCCCCCCceEecCCC
Q 022029 240 KCADKF-MA-VDKVCLVCNKPCKERNLVNVEKGG 271 (304)
Q Consensus 240 ~Ci~~~-~k-~~~~CPvC~~~f~~~diI~L~~~g 271 (304)
++|++| ++ ++++..+.+.+|++.|||+||.+.
T Consensus 130 eai~~LNiK~knwkdLltdepFtR~DiItiQdP~ 163 (518)
T KOG0883|consen 130 EAIEELNIKTKNWKDLLTDEPFTRADIITIQDPN 163 (518)
T ss_pred HHHHHhCcchhhHHHhhccCCcchhceeeecCcc
Confidence 999998 34 678999999999999999999873
No 4
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=1.1e-20 Score=169.95 Aligned_cols=141 Identities=26% Similarity=0.568 Sum_probs=114.2
Q ss_pred cccCCCC--cCCCcceecccCCCCCce-ecCCCceeehhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022029 30 ERLGKDS--IKPFDACCLCLKPFIDPL-CCQKGHIYCKECILECLLSQKKDIQRKLVAHAAQQKQEKEEEEERLMLQKAR 106 (304)
Q Consensus 30 ~Rlg~ds--~~~F~~C~LcL~p~~dPV-~t~~G~lyckEcIle~ll~qkkei~r~~~~~e~~~~~~~~~~~~~~~~~~~~ 106 (304)
+.+.+|. ...|-.|+|+.+|+..|| +|.-|.||+||.||+.||.+-
T Consensus 22 ek~Dkd~~r~sqw~~CaLtqepL~~Piv~c~lGrLYNKe~vi~~LL~Ks------------------------------- 70 (293)
T KOG3113|consen 22 EKVDKDAERVSQWRNCALTQEPLRRPIVACGLGRLYNKESVIEFLLDKS------------------------------- 70 (293)
T ss_pred CccChhHHHHHHHhhcccccCccccceeeehhhccccHHHHHHHHHhcc-------------------------------
Confidence 4444443 456999999999999997 788999999999999999631
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCCCCcCCCCccccchHHHHHhhccccccCCCCCCCCccccCCCCCccCCCCCCcCC
Q 022029 107 ELDAFDQQNHGAVPQYNDRNHSQDKNGFHGANSVKVTSYEEEALRTMKAFWLPSATPEAPVKVEAPSASTICPEGKEKLK 186 (304)
Q Consensus 107 ~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~sFWlps~tp~a~~~~~kp~~~~~CP~sg~~l~ 186 (304)
+ + | + ...|+.+
T Consensus 71 ----------------~----------------------------------~----p---------k------saShIKs 81 (293)
T KOG3113|consen 71 ----------------S----------------------------------L----P---------K------SASHIKS 81 (293)
T ss_pred ----------------c----------------------------------C----C---------c------chhhhcc
Confidence 0 0 0 0 0239999
Q ss_pred CCCceeeecccCCCccc-----ccCCCCCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCC
Q 022029 187 LKSLFPVYFTEDKSEEK-----KSSSNDKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKE 261 (304)
Q Consensus 187 lKDLi~l~f~~~~~~~~-----~~~~~~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~ 261 (304)
|||++.|+.+.|++... ........|+|||+.-.|++..+|++++.|||||++.+++++ +...|++|+..|..
T Consensus 82 lKDvveLklt~n~~~~gD~~~~~~D~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 82 LKDVVELKLTLNPAFEGDKGNKHDDTQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQE 159 (293)
T ss_pred hhhHhheecccCcccccccCccccccccceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccc
Confidence 99999999999854321 112235689999999999999999999999999999999996 36689999999999
Q ss_pred CCceEecCCCc
Q 022029 262 RNLVNVEKGGT 272 (304)
Q Consensus 262 ~diI~L~~~gt 272 (304)
+|+|.||+...
T Consensus 160 ~dvIvlNg~~E 170 (293)
T KOG3113|consen 160 DDVIVLNGTEE 170 (293)
T ss_pred cCeEeeCCCHH
Confidence 99999997654
No 5
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.15 E-value=3.9e-11 Score=87.10 Aligned_cols=54 Identities=15% Similarity=0.396 Sum_probs=49.1
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCCCCceEec
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKERNLVNVE 268 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~diI~L~ 268 (304)
.+.||||++.+.++ ++.+|||+||.+||.+++.....||+|+.+++.+|+|++.
T Consensus 1 ~~~Cpi~~~~~~~P----v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~ 54 (63)
T smart00504 1 EFLCPISLEVMKDP----VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNL 54 (63)
T ss_pred CcCCcCCCCcCCCC----EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCH
Confidence 37899999999998 5679999999999999998888999999999999999863
No 6
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.9e-11 Score=104.64 Aligned_cols=58 Identities=22% Similarity=0.695 Sum_probs=51.6
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCCCCceEec
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKERNLVNVE 268 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~diI~L~ 268 (304)
.+-|.||||++.++.... +...||||||..||+..++....||+|+++++.++++.|.
T Consensus 129 ~~~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred ccccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 456999999999988643 5689999999999999999999999999999999998874
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.12 E-value=1.1e-10 Score=103.05 Aligned_cols=62 Identities=27% Similarity=0.615 Sum_probs=53.0
Q ss_pred CCCCceeccCccccccCCcceEEEccCCccchHHHHHHHhh----------------cCCCCCCCCCCCCCCCceEecCC
Q 022029 207 SNDKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA----------------VDKVCLVCNKPCKERNLVNVEKG 270 (304)
Q Consensus 207 ~~~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k----------------~~~~CPvC~~~f~~~diI~L~~~ 270 (304)
...+.+.||||.+.+.++ ++.+|||+||+.||.+|+. ....||+|+.+++..++++|...
T Consensus 14 ~~~~~~~CpICld~~~dP----VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygr 89 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDP----VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGR 89 (193)
T ss_pred cCCCccCCccCCCcCCCc----EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeecc
Confidence 345679999999999887 5679999999999999864 13589999999999999999877
Q ss_pred Cc
Q 022029 271 GT 272 (304)
Q Consensus 271 gt 272 (304)
|.
T Consensus 90 g~ 91 (193)
T PLN03208 90 GQ 91 (193)
T ss_pred CC
Confidence 65
No 8
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.8e-09 Score=99.87 Aligned_cols=56 Identities=20% Similarity=0.583 Sum_probs=50.9
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCCCCceEec
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKERNLVNVE 268 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~diI~L~ 268 (304)
.+.+.|.+|++...|++ ..||||+||+.||..|......||+|+.+|.+.+||-|.
T Consensus 237 ~a~~kC~LCLe~~~~pS----aTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi~Lr 292 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPS----ATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKVICLR 292 (293)
T ss_pred CCCCceEEEecCCCCCC----cCcCcchHHHHHHHHHHccccCCCcccccCCCcceeeec
Confidence 45689999999999984 689999999999999998777899999999999999874
No 9
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.85 E-value=3.7e-09 Score=76.61 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=30.1
Q ss_pred cceecccCCCCCceecCCCceeehhhHHHHHH
Q 022029 41 DACCLCLKPFIDPLCCQKGHIYCKECILECLL 72 (304)
Q Consensus 41 ~~C~LcL~p~~dPV~t~~G~lyckEcIle~ll 72 (304)
-.|.||+.++.|||+++.||+||++||.+||.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~ 33 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLL 33 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHH
Confidence 36999999999999999999999999999985
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.84 E-value=2.3e-09 Score=71.07 Aligned_cols=39 Identities=41% Similarity=1.108 Sum_probs=33.9
Q ss_pred ccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCC
Q 022029 214 CPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVC 255 (304)
Q Consensus 214 CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC 255 (304)
||||.+.+.++ +++.+|||+||++|+.+++.....||+|
T Consensus 1 C~iC~~~~~~~---~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP---VVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE---EEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCc---CEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999996 5689999999999999999888899998
No 11
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2e-09 Score=110.49 Aligned_cols=55 Identities=22% Similarity=0.686 Sum_probs=49.5
Q ss_pred CceeccCccccccCCcceEEEccCCccchHHHHHHHhh-cCCCCCCCCCCCCCCCceEec
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA-VDKVCLVCNKPCKERNLVNVE 268 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k-~~~~CPvC~~~f~~~diI~L~ 268 (304)
+...||+|.+.+.+. +|..||||||+.||+..+. ...+||.|+..|...||.+|.
T Consensus 642 ~~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDA----VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred hceeCCCccCchhhH----HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 568999999988886 7999999999999999875 678999999999999999874
No 12
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=8.6e-09 Score=92.83 Aligned_cols=60 Identities=25% Similarity=0.567 Sum_probs=53.1
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHHHhh---cCCCCCCCCCCCCCCCceEecCCCc
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA---VDKVCLVCNKPCKERNLVNVEKGGT 272 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k---~~~~CPvC~~~f~~~diI~L~~~gt 272 (304)
.+.|-|.||++.-.++ ++..|||.|||.||.+|+. ....||||...++.+.||+|.--|.
T Consensus 45 ~~~FdCNICLd~akdP----VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~ 107 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDP----VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGS 107 (230)
T ss_pred CCceeeeeeccccCCC----EEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCC
Confidence 5679999999999998 6899999999999999975 3468899999999999999985554
No 13
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.72 E-value=6.2e-09 Score=70.65 Aligned_cols=43 Identities=30% Similarity=0.794 Sum_probs=36.0
Q ss_pred eccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCC
Q 022029 213 ICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCN 256 (304)
Q Consensus 213 ~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~ 256 (304)
.||||.+.|.....++ ..+|||+|+.+||.+|++....||+|+
T Consensus 2 ~C~IC~~~~~~~~~~~-~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVV-KLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEE-EETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEE-EccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 5999999998765555 456999999999999998888999994
No 14
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.67 E-value=1.5e-08 Score=68.50 Aligned_cols=38 Identities=29% Similarity=0.840 Sum_probs=29.3
Q ss_pred ccCccccccCCcceEEEccCCccchHHHHHHHhhcC----CCCCCC
Q 022029 214 CPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVD----KVCLVC 255 (304)
Q Consensus 214 CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~----~~CPvC 255 (304)
||||.+.|.++ +..+|||+||..||..+++.. ..||+|
T Consensus 1 CpiC~~~~~~P----v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP----VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE----EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc----cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999 567999999999999998632 479987
No 15
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.62 E-value=2.8e-08 Score=69.29 Aligned_cols=46 Identities=35% Similarity=0.922 Sum_probs=39.2
Q ss_pred ceeccCccccccCCcceEEEccCCcc-chHHHHHHHhhcCCCCCCCCCCCC
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHV-FCKKCADKFMAVDKVCLVCNKPCK 260 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhV-fc~~Ci~~~~k~~~~CPvC~~~f~ 260 (304)
+..|+||++.+.+ +++.+|||. ||..|+.+++.....||+|+.+++
T Consensus 2 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD----VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS----EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc----eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 3689999998766 368899999 999999999988899999999886
No 16
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.60 E-value=3.6e-08 Score=67.09 Aligned_cols=44 Identities=34% Similarity=0.803 Sum_probs=36.8
Q ss_pred eccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCC
Q 022029 213 ICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNK 257 (304)
Q Consensus 213 ~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~ 257 (304)
.|+||.+.+++. ...++.+|||+||..|+..+......||+|++
T Consensus 1 ~C~~C~~~~~~~-~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEE-RRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCC-CCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 499999999443 34678999999999999998756789999985
No 17
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.56 E-value=3.8e-08 Score=74.22 Aligned_cols=53 Identities=15% Similarity=0.422 Sum_probs=43.3
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHHHhhc-CCCCCCCCCCCCCCCceEe
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAV-DKVCLVCNKPCKERNLVNV 267 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~-~~~CPvC~~~f~~~diI~L 267 (304)
.|.||||++.+.++ ++.++||+|+..||.+|+.. ...||+|+.+++..++++.
T Consensus 4 ~f~CpIt~~lM~dP----Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn 57 (73)
T PF04564_consen 4 EFLCPITGELMRDP----VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPN 57 (73)
T ss_dssp GGB-TTTSSB-SSE----EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-
T ss_pred ccCCcCcCcHhhCc----eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceEC
Confidence 68999999999999 57799999999999999986 7899999999999888874
No 18
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.55 E-value=4.6e-08 Score=92.25 Aligned_cols=55 Identities=29% Similarity=0.695 Sum_probs=43.8
Q ss_pred ceeccCccc--cccCCcceEEEccCCccchHHHHHHHhh-cCCCCCCCCCCCCCCCceE
Q 022029 211 SFICPSCKV--TLTNTLSLVALSSCGHVFCKKCADKFMA-VDKVCLVCNKPCKERNLVN 266 (304)
Q Consensus 211 ~~~CPIc~k--~~~~~~~~v~l~~CGhVfc~~Ci~~~~k-~~~~CPvC~~~f~~~diI~ 266 (304)
.+.||+|+. .++...++++. +|||+||..||+.++. ....||+|+.++.+.++.+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~ 60 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRV 60 (309)
T ss_pred CCCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccc
Confidence 368999998 45555555555 9999999999999874 5568999999998877543
No 19
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.53 E-value=5.7e-08 Score=94.87 Aligned_cols=52 Identities=29% Similarity=0.647 Sum_probs=45.3
Q ss_pred CCCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCCCC
Q 022029 208 NDKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKERN 263 (304)
Q Consensus 208 ~~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~d 263 (304)
++..+.|+||.+.|.++ ++.+|||+||..||..++.....||+|+.++...+
T Consensus 23 Le~~l~C~IC~d~~~~P----vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~ 74 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVP----VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESK 74 (397)
T ss_pred cccccCCCcCchhhhCc----cCCCCCCchhHHHHHHHHhCCCCCCCCCCcccccc
Confidence 45679999999999988 46899999999999999877778999999987643
No 20
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.3e-07 Score=85.24 Aligned_cols=42 Identities=29% Similarity=0.686 Sum_probs=37.0
Q ss_pred CCCCcCCCcceecccCCCCCceecCCCceeehhhHHHHHHHh
Q 022029 33 GKDSIKPFDACCLCLKPFIDPLCCQKGHIYCKECILECLLSQ 74 (304)
Q Consensus 33 g~ds~~~F~~C~LcL~p~~dPV~t~~G~lyckEcIle~ll~q 74 (304)
|.++--.|.-|.+||..++|||+|..|||||.-||+.||..+
T Consensus 40 ~~~~~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~ 81 (230)
T KOG0823|consen 40 GRNRDGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTR 81 (230)
T ss_pred CccCCCCceeeeeeccccCCCEEeecccceehHHHHHHHhhc
Confidence 334556688899999999999999999999999999999864
No 21
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.48 E-value=1.1e-07 Score=64.62 Aligned_cols=33 Identities=39% Similarity=0.926 Sum_probs=20.1
Q ss_pred ccCccccccCCcceEEEccCCccchHHHHHHHhh
Q 022029 214 CPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA 247 (304)
Q Consensus 214 CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k 247 (304)
||||++ |++....-++.+|||+||.+||+++.+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~ 33 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSK 33 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHh
Confidence 999999 877433334456999999999999986
No 22
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.48 E-value=1.2e-07 Score=86.95 Aligned_cols=51 Identities=31% Similarity=0.661 Sum_probs=43.2
Q ss_pred CceeccCccccccCCc----ceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTNTL----SLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCK 260 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~----~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~ 260 (304)
....||||++.+.+.. .+.++.+|||+||..||.+|+.....||+|+.+|.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 3579999999887642 24567899999999999999988889999999876
No 23
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.41 E-value=2.9e-07 Score=60.98 Aligned_cols=44 Identities=39% Similarity=1.012 Sum_probs=36.4
Q ss_pred eccCccccccCCcceEEEccCCccchHHHHHHHhhc-CCCCCCCCCCC
Q 022029 213 ICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAV-DKVCLVCNKPC 259 (304)
Q Consensus 213 ~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~-~~~CPvC~~~f 259 (304)
.|+||.+.+.+. +.+.+|||.||..|+..++.. ...||+|+..+
T Consensus 1 ~C~iC~~~~~~~---~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREP---VVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCc---eEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999999444 456679999999999999875 77899998753
No 24
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.40 E-value=2.8e-07 Score=61.27 Aligned_cols=39 Identities=33% Similarity=0.966 Sum_probs=34.7
Q ss_pred ccCccccccCCcceEEEccCCccchHHHHHHHhh--cCCCCCCC
Q 022029 214 CPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA--VDKVCLVC 255 (304)
Q Consensus 214 CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k--~~~~CPvC 255 (304)
||||.+.+.++. .+.+|||.||..|+.+++. ....||+|
T Consensus 1 C~iC~~~~~~~~---~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV---ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE---EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC---EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999998873 5899999999999999987 56789987
No 25
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.33 E-value=3.8e-07 Score=68.75 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=28.9
Q ss_pred CcceecccCCCCCceecCCCceeehhhHHHHHH
Q 022029 40 FDACCLCLKPFIDPLCCQKGHIYCKECILECLL 72 (304)
Q Consensus 40 F~~C~LcL~p~~dPV~t~~G~lyckEcIle~ll 72 (304)
.-.|.||+...+|||++++||.|+|.+|..||.
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~ 36 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLE 36 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHC
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHH
Confidence 468999999999999999999999999999985
No 26
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.23 E-value=1.4e-06 Score=55.62 Aligned_cols=38 Identities=34% Similarity=1.050 Sum_probs=31.4
Q ss_pred ccCccccccCCcceEEEccCCccchHHHHHHHhh-cCCCCCCC
Q 022029 214 CPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA-VDKVCLVC 255 (304)
Q Consensus 214 CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k-~~~~CPvC 255 (304)
|+||++...+. ++.+|||+||..|++.++. ....||+|
T Consensus 1 C~iC~~~~~~~----~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDP----VVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCc----EEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999885544 5678999999999999987 56679987
No 27
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=7.6e-07 Score=88.23 Aligned_cols=56 Identities=23% Similarity=0.581 Sum_probs=46.7
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHHHhh-----cCCCCCCCCCCCCCCCceEecCC
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA-----VDKVCLVCNKPCKERNLVNVEKG 270 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k-----~~~~CPvC~~~f~~~diI~L~~~ 270 (304)
...||||+....-+ ++..|||+||..||-+++. ....||+|+..+..+|+-++.-+
T Consensus 186 ~~~CPICL~~~~~p----~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e 246 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP----VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIE 246 (513)
T ss_pred CCcCCcccCCCCcc----cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeec
Confidence 67899999988766 5677999999999999975 23699999999999898776533
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=6.5e-07 Score=82.15 Aligned_cols=55 Identities=18% Similarity=0.496 Sum_probs=46.3
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHH-Hhhc-CCCCCCCCCCCCCCCceEe
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADK-FMAV-DKVCLVCNKPCKERNLVNV 267 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~-~~k~-~~~CPvC~~~f~~~diI~L 267 (304)
...|.|+||......+ ..++||||||+.||-. |.++ ...||+|+.....++||.|
T Consensus 213 ~~d~kC~lC~e~~~~p----s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~viil 269 (271)
T COG5574 213 LADYKCFLCLEEPEVP----SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKVIIL 269 (271)
T ss_pred ccccceeeeecccCCc----ccccccchhhHHHHHHHHHhhccccCchhhhhccchhhhee
Confidence 4579999999998887 4789999999999998 6554 4569999999988888765
No 29
>PHA02926 zinc finger-like protein; Provisional
Probab=98.13 E-value=1.6e-06 Score=78.06 Aligned_cols=51 Identities=24% Similarity=0.575 Sum_probs=40.9
Q ss_pred CceeccCccccccC-----CcceEEEccCCccchHHHHHHHhhc------CCCCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTN-----TLSLVALSSCGHVFCKKCADKFMAV------DKVCLVCNKPCK 260 (304)
Q Consensus 210 ~~~~CPIc~k~~~~-----~~~~v~l~~CGhVfc~~Ci~~~~k~------~~~CPvC~~~f~ 260 (304)
....|+||++..-. ..++-++.+|||+||..||.+|... ...||+|+..|.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 45799999987633 3356789999999999999999753 245999999886
No 30
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.08 E-value=3.2e-06 Score=74.93 Aligned_cols=33 Identities=30% Similarity=0.727 Sum_probs=30.7
Q ss_pred cceecccCCCCCceecCCCceeehhhHHHHHHH
Q 022029 41 DACCLCLKPFIDPLCCQKGHIYCKECILECLLS 73 (304)
Q Consensus 41 ~~C~LcL~p~~dPV~t~~G~lyckEcIle~ll~ 73 (304)
..|.+|+.++.|||+|+.||+||++||..||..
T Consensus 19 ~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~ 51 (193)
T PLN03208 19 FDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYA 51 (193)
T ss_pred cCCccCCCcCCCcEEcCCCchhHHHHHHHHHHh
Confidence 569999999999999999999999999999764
No 31
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.03 E-value=1.9e-06 Score=80.07 Aligned_cols=51 Identities=25% Similarity=0.675 Sum_probs=46.3
Q ss_pred CCCCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCC
Q 022029 207 SNDKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKE 261 (304)
Q Consensus 207 ~~~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~ 261 (304)
.++....|-||...|.-+ ++.+|||.||+=||+.++..+..||+|+.++.+
T Consensus 21 ~LDs~lrC~IC~~~i~ip----~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 21 GLDSMLRCRICDCRISIP----CETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred cchhHHHhhhhhheeecc----eecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 456789999999999877 799999999999999999889999999999875
No 32
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.02 E-value=1.3e-06 Score=82.57 Aligned_cols=52 Identities=27% Similarity=0.655 Sum_probs=47.1
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCCCCc
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKERNL 264 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~di 264 (304)
+.-+.|-||++.|+-+ +|.||||.||.=||.+++.....||.|..+|.+.++
T Consensus 21 D~lLRC~IC~eyf~ip----~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIP----MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHHHHhHHHHHhcCc----eeccccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence 5578999999999887 789999999999999999989999999999998653
No 33
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.00 E-value=3e-06 Score=61.05 Aligned_cols=45 Identities=27% Similarity=0.502 Sum_probs=31.4
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHHHhh--cCCCCCCCC
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA--VDKVCLVCN 256 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k--~~~~CPvC~ 256 (304)
.-.+.|||++..|.++ |..+.|||+|..++|.+++. ....||+-|
T Consensus 9 ~~~~~CPiT~~~~~~P---V~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 9 TISLKCPITLQPFEDP---VKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp B--SB-TTTSSB-SSE---EEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred EeccCCCCcCChhhCC---cCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 3468999999999999 45789999999999999983 456899943
No 34
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.94 E-value=1.7e-06 Score=63.34 Aligned_cols=50 Identities=28% Similarity=0.721 Sum_probs=26.8
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCCCCce
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKERNLV 265 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~diI 265 (304)
-..|++|...|..+ |.+..|.|+||+.||.+.+. ..||+|..|--..|+.
T Consensus 7 lLrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 7 LLRCSICFDILKEP---VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQ 56 (65)
T ss_dssp TTS-SSS-S--SS----B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS--
T ss_pred hcCCcHHHHHhcCC---ceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHH
Confidence 46899999999998 56899999999999988654 3599999999887764
No 35
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.87 E-value=6.5e-06 Score=59.29 Aligned_cols=31 Identities=39% Similarity=0.723 Sum_probs=24.4
Q ss_pred cceecccCCCCCceecC-CCceeehhhHHHHH
Q 022029 41 DACCLCLKPFIDPLCCQ-KGHIYCKECILECL 71 (304)
Q Consensus 41 ~~C~LcL~p~~dPV~t~-~G~lyckEcIle~l 71 (304)
.-|.||++++++||.+. .||+|+|++|++||
T Consensus 12 ~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i 43 (57)
T PF11789_consen 12 LKCPITLQPFEDPVKSKKCGHTFEKEAILQYI 43 (57)
T ss_dssp SB-TTTSSB-SSEEEESSS--EEEHHHHHHHC
T ss_pred cCCCCcCChhhCCcCcCCCCCeecHHHHHHHH
Confidence 56889999999999765 59999999999999
No 36
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=3.6e-06 Score=79.37 Aligned_cols=56 Identities=25% Similarity=0.481 Sum_probs=49.7
Q ss_pred CceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCCCCceEec
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKERNLVNVE 268 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~diI~L~ 268 (304)
.+-.||||.+...|++ ++...|.|||+.|+-.++.....|||++.|..-+++|.|.
T Consensus 299 ~~~~CpvClk~r~Npt---vl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPT---VLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred ccccChhHHhccCCCc---eEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 3568999999999985 6778899999999999999999999999999888888764
No 37
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.80 E-value=2.1e-05 Score=59.34 Aligned_cols=44 Identities=23% Similarity=0.737 Sum_probs=35.1
Q ss_pred eccCccccccCC---------cceEEEccCCccchHHHHHHHhhcCCCCCCCC
Q 022029 213 ICPSCKVTLTNT---------LSLVALSSCGHVFCKKCADKFMAVDKVCLVCN 256 (304)
Q Consensus 213 ~CPIc~k~~~~~---------~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~ 256 (304)
.|+||+..|.++ .-.+++.+|||.|...||.+|++....||+|+
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 499999999332 13456778999999999999998888999996
No 38
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=1.5e-05 Score=74.09 Aligned_cols=36 Identities=36% Similarity=0.725 Sum_probs=32.7
Q ss_pred CCCcceecccCCCCCceecCCCceeehhhHHHHHHH
Q 022029 38 KPFDACCLCLKPFIDPLCCQKGHIYCKECILECLLS 73 (304)
Q Consensus 38 ~~F~~C~LcL~p~~dPV~t~~G~lyckEcIle~ll~ 73 (304)
..-..|.|||.+-.+|-|||.|||||..||++|+-+
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e 272 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE 272 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc
Confidence 334789999999999999999999999999999973
No 39
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.75 E-value=2.8e-05 Score=51.31 Aligned_cols=31 Identities=42% Similarity=0.922 Sum_probs=27.5
Q ss_pred eecccCCCCCc-eecCCCceeehhhHHHHHHH
Q 022029 43 CCLCLKPFIDP-LCCQKGHIYCKECILECLLS 73 (304)
Q Consensus 43 C~LcL~p~~dP-V~t~~G~lyckEcIle~ll~ 73 (304)
|.+|+...++| |+++-||+||++||..||..
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~ 32 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK 32 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC
Confidence 78999999999 58999999999999999865
No 40
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=5.9e-05 Score=72.50 Aligned_cols=77 Identities=23% Similarity=0.407 Sum_probs=54.6
Q ss_pred CCCCceeeecccCCCcccccCCCCCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcC-CCCCCCCCCCCCCCc
Q 022029 186 KLKSLFPVYFTEDKSEEKKSSSNDKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVD-KVCLVCNKPCKERNL 264 (304)
Q Consensus 186 ~lKDLi~l~f~~~~~~~~~~~~~~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~-~~CPvC~~~f~~~di 264 (304)
.++++-...|+...+. +....|.||.+.|...-++. +-||+|.|--.||+.|+... ..||+|.......--
T Consensus 211 ~l~~~p~~~f~~~~~~-------~~~~~CaIClEdY~~GdklR-iLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~ 282 (348)
T KOG4628|consen 211 LLKKLPVRTFTKGDDE-------DATDTCAICLEDYEKGDKLR-ILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSG 282 (348)
T ss_pred HHhhCCcEEecccccc-------CCCceEEEeecccccCCeee-EecCCCchhhccchhhHhhcCccCCCCCCcCCCCCC
Confidence 4455555667665432 12279999999999876654 57999999999999998755 459999987754333
Q ss_pred eEecCC
Q 022029 265 VNVEKG 270 (304)
Q Consensus 265 I~L~~~ 270 (304)
+..+.+
T Consensus 283 ~~~~~e 288 (348)
T KOG4628|consen 283 SEPVSE 288 (348)
T ss_pred CCCccC
Confidence 344333
No 41
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=5.5e-05 Score=70.01 Aligned_cols=49 Identities=22% Similarity=0.596 Sum_probs=40.5
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHHHhh--cCCCCCCCCCCCC
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA--VDKVCLVCNKPCK 260 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k--~~~~CPvC~~~f~ 260 (304)
.....||+|.+.-+.+. .+-+|||+||+-||..-.. ..+.||.|+.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~---~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPH---VIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCe---eeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 45679999999998883 5678999999999998644 4589999998654
No 42
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=4.5e-05 Score=71.07 Aligned_cols=52 Identities=27% Similarity=0.685 Sum_probs=43.1
Q ss_pred eccCccc-cccCCcceEEEccCCccchHHHHHHHhh-cCCCCCCCCCCCCCCCc
Q 022029 213 ICPSCKV-TLTNTLSLVALSSCGHVFCKKCADKFMA-VDKVCLVCNKPCKERNL 264 (304)
Q Consensus 213 ~CPIc~k-~~~~~~~~v~l~~CGhVfc~~Ci~~~~k-~~~~CPvC~~~f~~~di 264 (304)
.||+|+. .+.|+.-++++.+|||.+|.+|++.++. .+..||.|++.+.+.++
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 5999996 5667666667889999999999999865 77899999998876544
No 43
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=2.9e-05 Score=70.15 Aligned_cols=46 Identities=28% Similarity=0.706 Sum_probs=40.2
Q ss_pred CCCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCC
Q 022029 208 NDKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNK 257 (304)
Q Consensus 208 ~~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~ 257 (304)
....+.||||.+.|..+ .+.+|||.||..|+..++.....||+|+.
T Consensus 10 ~~~~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP----VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcC----ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 35679999999999998 57899999999999998765579999993
No 44
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=5e-05 Score=66.23 Aligned_cols=35 Identities=29% Similarity=0.738 Sum_probs=29.7
Q ss_pred CCCcceecccCCCC--CceecCCCceeehhhHHHHHH
Q 022029 38 KPFDACCLCLKPFI--DPLCCQKGHIYCKECILECLL 72 (304)
Q Consensus 38 ~~F~~C~LcL~p~~--dPV~t~~G~lyckEcIle~ll 72 (304)
..-.-|-+||-++. -||.|..|||||++||-+.|-
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk 165 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALK 165 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHH
Confidence 34578999999985 788999999999999988664
No 45
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00014 Score=72.42 Aligned_cols=33 Identities=36% Similarity=0.758 Sum_probs=30.9
Q ss_pred cceecccCCCCCceecCCCceeehhhHHHHHHH
Q 022029 41 DACCLCLKPFIDPLCCQKGHIYCKECILECLLS 73 (304)
Q Consensus 41 ~~C~LcL~p~~dPV~t~~G~lyckEcIle~ll~ 73 (304)
..|-+||.|..-|+.|..|||||-.|||.|+..
T Consensus 187 ~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~ 219 (513)
T KOG2164|consen 187 MQCPICLEPPSVPVRTNCGHIFCGPCILQYWNY 219 (513)
T ss_pred CcCCcccCCCCcccccccCceeeHHHHHHHHhh
Confidence 389999999999999999999999999999864
No 46
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00014 Score=68.31 Aligned_cols=51 Identities=25% Similarity=0.588 Sum_probs=43.4
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHHHhh-cCCCCCCCCCCCC
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA-VDKVCLVCNKPCK 260 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k-~~~~CPvC~~~f~ 260 (304)
+....|.||+..|....+ +++.||-|+|--.|+++|+. ...+||+|+.++-
T Consensus 321 ~~GveCaICms~fiK~d~-~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDR-LRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccce-EEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 345799999999987767 45679999999999999987 6679999998864
No 47
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=97.32 E-value=0.00022 Score=48.11 Aligned_cols=31 Identities=32% Similarity=0.834 Sum_probs=26.7
Q ss_pred eecccCCCCCceecCCCceeehhhHHHHHHH
Q 022029 43 CCLCLKPFIDPLCCQKGHIYCKECILECLLS 73 (304)
Q Consensus 43 C~LcL~p~~dPV~t~~G~lyckEcIle~ll~ 73 (304)
|.+||.-+.+||..+-||.||+.||..+.-.
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~ 31 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKE 31 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCC
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHc
Confidence 7899999999999999999999999988754
No 48
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.31 E-value=0.00012 Score=65.01 Aligned_cols=48 Identities=31% Similarity=0.737 Sum_probs=41.5
Q ss_pred CCCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCC
Q 022029 208 NDKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPC 259 (304)
Q Consensus 208 ~~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f 259 (304)
.+-.|.|-||++.|..+ ++..|||.||..|.-.-.+....|-+|++.-
T Consensus 193 e~IPF~C~iCKkdy~sp----vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 193 EKIPFLCGICKKDYESP----VVTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred CCCceeehhchhhccch----hhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 34579999999999998 5789999999999887777778999999854
No 49
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00012 Score=68.66 Aligned_cols=47 Identities=30% Similarity=0.453 Sum_probs=40.0
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCC-CCCCCCCCCC
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKV-CLVCNKPCKE 261 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~-CPvC~~~f~~ 261 (304)
.-.|+||.-....+ +...|+|+||+-||+-....++. |++|+.+|..
T Consensus 7 ~~eC~IC~nt~n~P----v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 7 KKECLICYNTGNCP----VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred CCcceeeeccCCcC----ccccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 35799999988887 46799999999999987666655 9999999985
No 50
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00018 Score=68.16 Aligned_cols=35 Identities=26% Similarity=0.633 Sum_probs=30.2
Q ss_pred CCCcceecccCCCCCce-ecCCCceeehhhHHHHHH
Q 022029 38 KPFDACCLCLKPFIDPL-CCQKGHIYCKECILECLL 72 (304)
Q Consensus 38 ~~F~~C~LcL~p~~dPV-~t~~G~lyckEcIle~ll 72 (304)
..-..|.+||...++|- ++-.||+||.-||+.|+.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~ 333 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV 333 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHH
Confidence 44578999999999885 566799999999999986
No 51
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=4.9e-05 Score=72.50 Aligned_cols=50 Identities=32% Similarity=0.625 Sum_probs=43.0
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHHHhh-cCCCCCCCCCCCCC
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA-VDKVCLVCNKPCKE 261 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k-~~~~CPvC~~~f~~ 261 (304)
...++||||+..+++. +....|+|-||.+||.+.++ ....||.|++.+..
T Consensus 41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 4579999999999887 35789999999999998775 67899999998854
No 52
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00049 Score=66.77 Aligned_cols=57 Identities=21% Similarity=0.407 Sum_probs=44.7
Q ss_pred CceeccCccccccCCcceEEEccCCccchHHHHHHHhhc---CCCCCCCCCCCCCCCceEe
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAV---DKVCLVCNKPCKERNLVNV 267 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~---~~~CPvC~~~f~~~diI~L 267 (304)
..|.|||.++.-++.+..+ .-.||||+|.+++.++.+. ..+||.|-..-...|.+.|
T Consensus 333 SvF~CPVlKeqtsdeNPPm-~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql 392 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPM-MLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQL 392 (394)
T ss_pred ceeecccchhhccCCCCCe-eeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhcccc
Confidence 3589999999887765554 4589999999999999763 3799999887766665544
No 53
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.89 E-value=0.0011 Score=43.74 Aligned_cols=31 Identities=39% Similarity=1.021 Sum_probs=28.8
Q ss_pred eecccCCCCCce-ecCCCceeehhhHHHHHHH
Q 022029 43 CCLCLKPFIDPL-CCQKGHIYCKECILECLLS 73 (304)
Q Consensus 43 C~LcL~p~~dPV-~t~~G~lyckEcIle~ll~ 73 (304)
|.+|+.++.+|+ .++-||.||.+||.+++..
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~ 32 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLEN 32 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHH
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHh
Confidence 789999999999 8889999999999999864
No 54
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.77 E-value=0.00068 Score=48.20 Aligned_cols=34 Identities=24% Similarity=0.642 Sum_probs=28.0
Q ss_pred EEccCCccchHHHHHHHhhcCCCCCCCCCCCCCCCc
Q 022029 229 ALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKERNL 264 (304)
Q Consensus 229 ~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~di 264 (304)
++.+|||++|..|..- .....||.|+++|...|+
T Consensus 21 ~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 21 TVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDDP 54 (55)
T ss_pred ccccccceeeccccCh--hhccCCCCCCCcccCCCC
Confidence 4679999999999775 345689999999987664
No 55
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.00087 Score=61.88 Aligned_cols=40 Identities=38% Similarity=0.788 Sum_probs=34.5
Q ss_pred ccCCCCcCCCcc-----eecccCCCCCceecCCCceeehhhHHHH
Q 022029 31 RLGKDSIKPFDA-----CCLCLKPFIDPLCCQKGHIYCKECILEC 70 (304)
Q Consensus 31 Rlg~ds~~~F~~-----C~LcL~p~~dPV~t~~G~lyckEcIle~ 70 (304)
-|++-...||-- |.||+.+..+|++|+.|||||.-||+..
T Consensus 201 n~s~kn~~pfip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~ 245 (271)
T COG5574 201 NLSKKNGLPFIPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLIS 245 (271)
T ss_pred cccccccCCcccccccceeeeecccCCcccccccchhhHHHHHHH
Confidence 334445677777 9999999999999999999999999986
No 56
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.69 E-value=0.00075 Score=61.57 Aligned_cols=53 Identities=25% Similarity=0.624 Sum_probs=39.3
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCCCCceEecCC
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKERNLVNVEKG 270 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~diI~L~~~ 270 (304)
..+|..|..--. +.. .+|..|+||||..|...-. ...||+|++++. +|.|+..
T Consensus 3 ~VhCn~C~~~~~-~~~-f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir---~i~l~~s 55 (233)
T KOG4739|consen 3 FVHCNKCFRFPS-QDP-FFLTACRHVFCEPCLKASS--PDVCPLCKKSIR---IIQLNRS 55 (233)
T ss_pred eEEeccccccCC-CCc-eeeeechhhhhhhhcccCC--ccccccccceee---eeecccc
Confidence 468999987655 434 5799999999999977632 228999999864 6666544
No 57
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0012 Score=67.66 Aligned_cols=58 Identities=19% Similarity=0.472 Sum_probs=45.2
Q ss_pred CceeccCccccccCCcce-EEEccCCccchHHHHHHHhhcCCCCCCCCCCCCCCCceEe
Q 022029 210 KSFICPSCKVTLTNTLSL-VALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKERNLVNV 267 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~-v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~diI~L 267 (304)
..-.|+||.+.+.....+ .-.-+|||+|+..|+..|+.....||.|+..+-...++..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~~~~~ 348 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDYVLWQI 348 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhccccccc
Confidence 356999999999884221 1245999999999999999988999999996665554443
No 58
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.65 E-value=0.0018 Score=50.28 Aligned_cols=34 Identities=26% Similarity=0.663 Sum_probs=28.8
Q ss_pred EEEccCCccchHHHHHHHhhc---CCCCCCCCCCCCC
Q 022029 228 VALSSCGHVFCKKCADKFMAV---DKVCLVCNKPCKE 261 (304)
Q Consensus 228 v~l~~CGhVfc~~Ci~~~~k~---~~~CPvC~~~f~~ 261 (304)
+++-.|||.|-..||.+|+.. +..||.|+.++..
T Consensus 47 lv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 47 LVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred eeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 346789999999999999863 4799999998864
No 59
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.00099 Score=62.41 Aligned_cols=66 Identities=29% Similarity=0.604 Sum_probs=48.6
Q ss_pred eeeecccCCCcccc----cCCCCCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCC
Q 022029 191 FPVYFTEDKSEEKK----SSSNDKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCK 260 (304)
Q Consensus 191 i~l~f~~~~~~~~~----~~~~~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~ 260 (304)
-.|+|.++...+.. .....-.|.|-||.+.|-++ ++..|||.||..|.-.-++....|++|++...
T Consensus 217 Wqi~~e~d~~ke~~~~~~~D~~~~Pf~c~icr~~f~~p----Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 217 WQIEFEWDSAKEKKRVKIEDIELLPFKCFICRKYFYRP----VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred ceeehhhhccccccceecCCcccCCccccccccccccc----hhhcCCceeehhhhccccccCCcceecccccc
Confidence 46777766432111 11122357799999999999 57899999999998877777789999998764
No 60
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=96.54 E-value=0.0023 Score=43.01 Aligned_cols=33 Identities=33% Similarity=0.704 Sum_probs=27.8
Q ss_pred cceecccCCCC---CceecCCCceeehhhHHHHHHH
Q 022029 41 DACCLCLKPFI---DPLCCQKGHIYCKECILECLLS 73 (304)
Q Consensus 41 ~~C~LcL~p~~---dPV~t~~G~lyckEcIle~ll~ 73 (304)
|.|.+|+.++. .++.++-||+|+.+||.+||..
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~ 36 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR 36 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh
Confidence 57999999983 5568889999999999999964
No 61
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.00031 Score=49.81 Aligned_cols=49 Identities=24% Similarity=0.711 Sum_probs=40.8
Q ss_pred eeccCccccccCCcceEEEccCCcc-chHHHHHHHhh-cCCCCCCCCCCCCCCCceE
Q 022029 212 FICPSCKVTLTNTLSLVALSSCGHV-FCKKCADKFMA-VDKVCLVCNKPCKERNLVN 266 (304)
Q Consensus 212 ~~CPIc~k~~~~~~~~v~l~~CGhV-fc~~Ci~~~~k-~~~~CPvC~~~f~~~diI~ 266 (304)
-.|-||.+.--+. ++-.|||. +|+.|-.++++ ....||+|+.++. |||.
T Consensus 8 dECTICye~pvds----VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~--dvIk 58 (62)
T KOG4172|consen 8 DECTICYEHPVDS----VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK--DVIK 58 (62)
T ss_pred cceeeeccCcchH----HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH--HHHH
Confidence 5799999987776 58899996 69999999877 5679999999886 5664
No 62
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0013 Score=63.97 Aligned_cols=58 Identities=22% Similarity=0.564 Sum_probs=46.1
Q ss_pred ceeccCccccccCC-cceEEEccCCccchHHHHHHHhh--cCCCCCCCCCCCCCCCceEec
Q 022029 211 SFICPSCKVTLTNT-LSLVALSSCGHVFCKKCADKFMA--VDKVCLVCNKPCKERNLVNVE 268 (304)
Q Consensus 211 ~~~CPIc~k~~~~~-~~~v~l~~CGhVfc~~Ci~~~~k--~~~~CPvC~~~f~~~diI~L~ 268 (304)
...||||.+.+.-+ .+.+++..|||.|...||++|+. ..+.||.|+.+-++.+|.+++
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~ 64 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEY 64 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHH
Confidence 45899999976543 24456789999999999999974 357999999998887776553
No 63
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.35 E-value=0.0021 Score=60.35 Aligned_cols=72 Identities=22% Similarity=0.555 Sum_probs=50.3
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHHH-hhcCCCCCCCCCCC------CCC--------CceEecCCCcccc
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKF-MAVDKVCLVCNKPC------KER--------NLVNVEKGGTGFA 275 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~-~k~~~~CPvC~~~f------~~~--------diI~L~~~gtgfa 275 (304)
.+.||.|+..+.|+.+ ..-|||.||.+||... +..+..||+|...- ..+ -++.-|+..-|-+
T Consensus 274 ~LkCplc~~Llrnp~k---T~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq~~~~gts 350 (427)
T COG5222 274 SLKCPLCHCLLRNPMK---TPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQRKKVGTS 350 (427)
T ss_pred cccCcchhhhhhCccc---CccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHHHHhcCCC
Confidence 3899999999999843 3569999999999975 45789999998721 110 1222245556777
Q ss_pred ccCCeeeeee
Q 022029 276 AHGDRLEARD 285 (304)
Q Consensus 276 a~g~~~eak~ 285 (304)
.-|..-+.++
T Consensus 351 ~d~n~p~s~k 360 (427)
T COG5222 351 DDNNTPMSEK 360 (427)
T ss_pred CCCCCchhhh
Confidence 7665555555
No 64
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.34 E-value=0.001 Score=69.22 Aligned_cols=51 Identities=20% Similarity=0.429 Sum_probs=43.2
Q ss_pred CceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKE 261 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~ 261 (304)
..-.||+|...|.+. -+..-++|||.||..||..|.+-...||+|+..|.+
T Consensus 122 ~~~~CP~Ci~s~~Dq-L~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQ-LEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHH-hhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 345899999999886 233467999999999999998877899999999985
No 65
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0024 Score=62.87 Aligned_cols=49 Identities=29% Similarity=0.733 Sum_probs=43.5
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCC
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKE 261 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~ 261 (304)
...|.|-||+..|-++ +..+|||-||..||.+.+.....||.|+.+|.+
T Consensus 82 ~sef~c~vc~~~l~~p----v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP----VVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC----ccccccccccHHHHHHHhccCCCCccccccccc
Confidence 4579999999999998 356999999999999987788999999999874
No 66
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0034 Score=60.57 Aligned_cols=50 Identities=18% Similarity=0.545 Sum_probs=38.2
Q ss_pred CceeccCccccccCCcceE---------EEccCCccchHHHHHHHhhcCCCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTNTLSLV---------ALSSCGHVFCKKCADKFMAVDKVCLVCNKPC 259 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v---------~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f 259 (304)
+.-.|-||++.+-++-+=- ---||||.+--+|++.|+..+..||+|+.++
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 4568999999853321000 0238999999999999999889999999983
No 67
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.17 E-value=0.003 Score=62.16 Aligned_cols=50 Identities=26% Similarity=0.495 Sum_probs=39.6
Q ss_pred CC-CCcccccCCCCcCCCcceecccCCCCCceecCCCceeehhhHHHHHHHhh
Q 022029 24 GY-GTQKERLGKDSIKPFDACCLCLKPFIDPLCCQKGHIYCKECILECLLSQK 75 (304)
Q Consensus 24 ~~-Gt~~~Rlg~ds~~~F~~C~LcL~p~~dPV~t~~G~lyckEcIle~ll~qk 75 (304)
+| +|.-..| +.+...-.|.+|+..+.+||+++.||.||..||..+|..+.
T Consensus 11 Dw~~t~~~~l--~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~ 61 (397)
T TIGR00599 11 DWLTTPIPSL--YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQP 61 (397)
T ss_pred hhccCCcccc--cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCC
Confidence 45 5543444 33556679999999999999999999999999999986543
No 68
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.12 E-value=0.0023 Score=62.93 Aligned_cols=56 Identities=25% Similarity=0.682 Sum_probs=46.2
Q ss_pred CCCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCCCCceE
Q 022029 208 NDKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKERNLVN 266 (304)
Q Consensus 208 ~~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~diI~ 266 (304)
.+..+.||+|..++.++.. ...|||.||..|+..+......||+|.........+.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~---~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQ---TTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP 73 (391)
T ss_pred CcccccCccccccccCCCC---CCCCCCcccccccchhhccCcCCcccccccchhhccC
Confidence 3567999999999999942 1599999999999999877889999988887655443
No 69
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.0039 Score=60.88 Aligned_cols=48 Identities=23% Similarity=0.470 Sum_probs=38.3
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHHHhh--------cCCCCCCCCC
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA--------VDKVCLVCNK 257 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k--------~~~~CPvC~~ 257 (304)
..-|.|-||++...++ +.++..||+||||..|++.+.. +.++||-++-
T Consensus 182 ~slf~C~ICf~e~~G~-~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQ-HCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hhcccceeeehhhcCc-ceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 4569999999999886 5567889999999999999853 2467876653
No 70
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.00 E-value=0.0042 Score=58.79 Aligned_cols=57 Identities=30% Similarity=0.489 Sum_probs=44.6
Q ss_pred CceeccCccccccCCcceEEEccCCccchHHHHHHHhhc---CCCCCCCCCCCCCCCceEe
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAV---DKVCLVCNKPCKERNLVNV 267 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~---~~~CPvC~~~f~~~diI~L 267 (304)
.-|+|||.++.-++-+..+ +-.||||++.+.+..+.+. ..+||.|-..-.-.|++.+
T Consensus 335 s~FiCPVlKe~~t~ENpP~-ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~rv 394 (396)
T COG5109 335 SLFICPVLKELCTDENPPV-MLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILRV 394 (396)
T ss_pred ceeeccccHhhhcccCCCe-eeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhcc
Confidence 3589999999887755444 5699999999999998653 4699999877666666654
No 71
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=95.78 E-value=0.0091 Score=49.94 Aligned_cols=50 Identities=30% Similarity=0.645 Sum_probs=42.1
Q ss_pred CceeccCccccccCCcceEEEcc---CCccchHHHHHHHhh---cCCCCCCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTNTLSLVALSS---CGHVFCKKCADKFMA---VDKVCLVCNKPCKER 262 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~---CGhVfc~~Ci~~~~k---~~~~CPvC~~~f~~~ 262 (304)
.-|.|.||.++.++. + .++| ||..+|.-|.-.+|+ -...||+|...|+..
T Consensus 79 ~lYeCnIC~etS~ee-~--FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEE-R--FLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchh-h--cCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 359999999998886 3 3566 999999999999987 357999999999754
No 72
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=95.72 E-value=0.0062 Score=59.90 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=27.7
Q ss_pred ceecccCCCCCceecC-CCceeehhhHHHHHH
Q 022029 42 ACCLCLKPFIDPLCCQ-KGHIYCKECILECLL 72 (304)
Q Consensus 42 ~C~LcL~p~~dPV~t~-~G~lyckEcIle~ll 72 (304)
-|+|+-.--++||+.| .||||+|-=|-.||.
T Consensus 2 ~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~ 33 (506)
T KOG0289|consen 2 VCAISGEVPEEPVVSPVSGHVFEKRLIEQYIA 33 (506)
T ss_pred eecccCCCCCCccccccccchHHHHHHHHHHH
Confidence 4999999999999998 599999999988885
No 73
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.0071 Score=58.71 Aligned_cols=56 Identities=23% Similarity=0.552 Sum_probs=43.1
Q ss_pred CceeccCccccccCCcceEEEccCCccchHHHHHHHhh--cC-CCCCCCCCCCCCCCce
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA--VD-KVCLVCNKPCKERNLV 265 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k--~~-~~CPvC~~~f~~~diI 265 (304)
.+..|.||.+-+.+...+..+-.|||+|-..|+.+|+. +. ..||+|.-......++
T Consensus 3 i~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 3 IMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred ccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 35689999877777656666778999999999999986 33 5899999555554444
No 74
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=95.65 E-value=0.0072 Score=37.90 Aligned_cols=30 Identities=37% Similarity=0.930 Sum_probs=27.5
Q ss_pred eecccCCCCCceecCCCceeehhhHHHHHH
Q 022029 43 CCLCLKPFIDPLCCQKGHIYCKECILECLL 72 (304)
Q Consensus 43 C~LcL~p~~dPV~t~~G~lyckEcIle~ll 72 (304)
|.+|+....+|+..+-||+||.+||..++.
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~ 30 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK 30 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHH
Confidence 788999999999999999999999998875
No 75
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.59 E-value=0.0094 Score=41.39 Aligned_cols=47 Identities=28% Similarity=0.632 Sum_probs=23.5
Q ss_pred ccCccccccCCcceEEEccCCccchHHHHHHHhh-cCCCCCCCCCCCC
Q 022029 214 CPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA-VDKVCLVCNKPCK 260 (304)
Q Consensus 214 CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k-~~~~CPvC~~~f~ 260 (304)
||+|...+...-.-+.-=+||+-+|..|..+++. .+..||-|+++|+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 7888888744322233447899999999999875 5789999999874
No 76
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.25 E-value=0.0064 Score=57.86 Aligned_cols=49 Identities=27% Similarity=0.670 Sum_probs=43.7
Q ss_pred CceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKE 261 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~ 261 (304)
.-..|++|...|.+++. +.-|=|.||..||-+++.....||.|+..+..
T Consensus 14 ~~itC~LC~GYliDATT---I~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATT---ITECLHTFCKSCIVKYLEESKYCPTCDIVIHK 62 (331)
T ss_pred cceehhhccceeecchh---HHHHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence 46799999999999874 67899999999999998888999999988865
No 77
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=95.23 E-value=0.021 Score=39.44 Aligned_cols=32 Identities=28% Similarity=0.684 Sum_probs=28.9
Q ss_pred cceecccCCCCCceecCCCce-eehhhHHHHHH
Q 022029 41 DACCLCLKPFIDPLCCQKGHI-YCKECILECLL 72 (304)
Q Consensus 41 ~~C~LcL~p~~dPV~t~~G~l-yckEcIle~ll 72 (304)
+.|.+|+....+++..|-||+ ||.+|+..++.
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~ 35 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLK 35 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcc
Confidence 469999999999999999999 99999999875
No 78
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=95.18 E-value=0.016 Score=57.15 Aligned_cols=58 Identities=21% Similarity=0.352 Sum_probs=52.8
Q ss_pred eeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCCCCceEecCCCc
Q 022029 212 FICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKERNLVNVEKGGT 272 (304)
Q Consensus 212 ~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~diI~L~~~gt 272 (304)
+.|.|..++-..+ |+....||||=.+-|++++.....||+.+++++.++||+|..++.
T Consensus 1 m~CaISgEvP~~P---VvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~Ik~~~~ 58 (506)
T KOG0289|consen 1 MVCAISGEVPEEP---VVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVEIKVPAQ 58 (506)
T ss_pred CeecccCCCCCCc---cccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeeecccccc
Confidence 3799999998887 678889999999999999999999999999999999999988754
No 79
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.018 Score=55.48 Aligned_cols=49 Identities=24% Similarity=0.636 Sum_probs=42.3
Q ss_pred CCceeccCccccccCCcceEEEccCCcc-chHHHHHHHhhcCCCCCCCCCCCCC
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHV-FCKKCADKFMAVDKVCLVCNKPCKE 261 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhV-fc~~Ci~~~~k~~~~CPvC~~~f~~ 261 (304)
+..-.|-||+....+. ++-||-|. +|..|.+.+.-+...||+|+.++..
T Consensus 288 ~~gkeCVIClse~rdt----~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDT----VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcce----EEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 4577999999998886 67899996 6999999987667799999999975
No 80
>PHA02929 N1R/p28-like protein; Provisional
Probab=95.09 E-value=0.014 Score=53.77 Aligned_cols=33 Identities=24% Similarity=0.603 Sum_probs=28.3
Q ss_pred CcceecccCCCCCc--------eecCCCceeehhhHHHHHH
Q 022029 40 FDACCLCLKPFIDP--------LCCQKGHIYCKECILECLL 72 (304)
Q Consensus 40 F~~C~LcL~p~~dP--------V~t~~G~lyckEcIle~ll 72 (304)
-..|++||.++.++ |.++.||+||++||.+|+-
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~ 214 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK 214 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh
Confidence 47899999998753 6778999999999999974
No 81
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.08 E-value=0.014 Score=58.83 Aligned_cols=51 Identities=25% Similarity=0.561 Sum_probs=43.1
Q ss_pred CCCceeccCccccccCCcceEEEccCCccchHHHHHHHhh-----cCCCCCCCCCCCCCC
Q 022029 208 NDKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA-----VDKVCLVCNKPCKER 262 (304)
Q Consensus 208 ~~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k-----~~~~CPvC~~~f~~~ 262 (304)
+.+...|-+|.++-.+. +...|-|+||.-||.+++. .+..||+|...++.+
T Consensus 533 nk~~~~C~lc~d~aed~----i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDY----IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ccCceeecccCChhhhh----HhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 35678999999998887 4689999999999999875 246999999998753
No 82
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.012 Score=58.71 Aligned_cols=50 Identities=24% Similarity=0.594 Sum_probs=37.2
Q ss_pred ceeccCccccccCC------cce-------EEEccCCccchHHHHHHHhh-cCCCCCCCCCCCC
Q 022029 211 SFICPSCKVTLTNT------LSL-------VALSSCGHVFCKKCADKFMA-VDKVCLVCNKPCK 260 (304)
Q Consensus 211 ~~~CPIc~k~~~~~------~~~-------v~l~~CGhVfc~~Ci~~~~k-~~~~CPvC~~~f~ 260 (304)
.--|+||+..+.=- +.. -++.||-|+|...|+.+|+. -...||+|+.++-
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 45799999765210 000 23569999999999999997 5679999998864
No 83
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=94.91 E-value=0.023 Score=38.55 Aligned_cols=30 Identities=30% Similarity=0.882 Sum_probs=19.5
Q ss_pred eecccCCCCC----ceecCCCceeehhhHHHHHHH
Q 022029 43 CCLCLKPFID----PLCCQKGHIYCKECILECLLS 73 (304)
Q Consensus 43 C~LcL~p~~d----PV~t~~G~lyckEcIle~ll~ 73 (304)
|-+|.. +.+ ||+-+-||+||++||-..+-.
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~ 34 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKK 34 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhc
Confidence 677888 777 999999999999999876653
No 84
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.82 E-value=0.014 Score=57.71 Aligned_cols=50 Identities=24% Similarity=0.478 Sum_probs=42.5
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCC
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCK 260 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~ 260 (304)
..--.||||++.+...+..++...|-|.|--.|+.+|. ++.||||+--..
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 44568999999999988778889999999999999984 678999986554
No 85
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.72 E-value=0.055 Score=53.46 Aligned_cols=66 Identities=17% Similarity=0.459 Sum_probs=50.8
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcC-----------CCCCCCCCCCCCCCceEecCC-Cccccc
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVD-----------KVCLVCNKPCKERNLVNVEKG-GTGFAA 276 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~-----------~~CPvC~~~f~~~diI~L~~~-gtgfaa 276 (304)
+.++.||||..-|.++ +|.+|||.+|.-|....+... -.-|+-+..+-..|-+.|..+ ..||-.
T Consensus 2 eeelkc~vc~~f~~ep----iil~c~h~lc~~ca~~~~~~tp~~~spq~~~aa~s~vs~~~~~~~d~msl~~~ad~g~~~ 77 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREP----IILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDYDYLDLDKMSLYSEADSGYGS 77 (699)
T ss_pred cccccCceehhhccCc----eEeecccHHHHHHHHhhcccCCCCCCchhhhhcCCCCCccccccccceeeEeeccCCCCc
Confidence 3568999999999998 688999999999988764321 134666666666788888877 568887
Q ss_pred cC
Q 022029 277 HG 278 (304)
Q Consensus 277 ~g 278 (304)
+|
T Consensus 78 ~~ 79 (699)
T KOG4367|consen 78 YG 79 (699)
T ss_pred cC
Confidence 76
No 86
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.46 E-value=0.015 Score=45.92 Aligned_cols=30 Identities=30% Similarity=0.672 Sum_probs=25.3
Q ss_pred eeccCccccccCCcceEEEccCCccchHHHHH
Q 022029 212 FICPSCKVTLTNTLSLVALSSCGHVFCKKCAD 243 (304)
Q Consensus 212 ~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~ 243 (304)
-.|++|.+.|.+. .+++-||||+|.+.|++
T Consensus 79 ~~C~vC~k~l~~~--~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 79 TKCSVCGKPLGNS--VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCccCcCCcCCCc--eEEEeCCCeEEeccccc
Confidence 4699999999884 35577999999999975
No 87
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.42 E-value=0.021 Score=55.75 Aligned_cols=54 Identities=22% Similarity=0.591 Sum_probs=41.2
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHHHhhc--CCCCCCCCCCCCCCCceEec
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAV--DKVCLVCNKPCKERNLVNVE 268 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~--~~~CPvC~~~f~~~diI~L~ 268 (304)
--.|-||-+.=.+ |-|-||||.+|..|+..|-.. ...||.|+-.++--.-|.|.
T Consensus 369 FeLCKICaendKd----vkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~viid 424 (563)
T KOG1785|consen 369 FELCKICAENDKD----VKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVIID 424 (563)
T ss_pred HHHHHHhhccCCC----cccccccchHHHHHHHhhcccCCCCCCCceeeEeccccceeee
Confidence 3479999885444 358899999999999998643 46899999999755555543
No 88
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=94.07 E-value=0.033 Score=36.11 Aligned_cols=31 Identities=35% Similarity=0.935 Sum_probs=26.5
Q ss_pred ceecccCCCCCceecC-CCceeehhhHHHHHH
Q 022029 42 ACCLCLKPFIDPLCCQ-KGHIYCKECILECLL 72 (304)
Q Consensus 42 ~C~LcL~p~~dPV~t~-~G~lyckEcIle~ll 72 (304)
.|.+|+..+.+|+..+ -||.||.+|+..++.
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~ 32 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLK 32 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHH
Confidence 3889999998888555 899999999998875
No 89
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.05 E-value=0.067 Score=40.99 Aligned_cols=49 Identities=22% Similarity=0.524 Sum_probs=38.8
Q ss_pred eeccCccccccCCcce-EEEccCCccchHHHHHHHhhcCCCCCCCCCCCC
Q 022029 212 FICPSCKVTLTNTLSL-VALSSCGHVFCKKCADKFMAVDKVCLVCNKPCK 260 (304)
Q Consensus 212 ~~CPIc~k~~~~~~~~-v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~ 260 (304)
-.||-|.-..+....+ |+.-.|-|.|-..||.+|+.....||.+++++.
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 3677777655554444 456689999999999999998899999999874
No 90
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.00 E-value=0.037 Score=53.05 Aligned_cols=55 Identities=20% Similarity=0.477 Sum_probs=39.3
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHHHhh-cCCCCCCCCCCCCCCCce
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA-VDKVCLVCNKPCKERNLV 265 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k-~~~~CPvC~~~f~~~diI 265 (304)
.-.||+|.+.+.=.-+-+.--+||.-+|.-|...+-. -+.+||.|+..++++++.
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~ 69 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVR 69 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccccee
Confidence 3459999997643222233458998888888777432 357999999999988764
No 91
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.032 Score=52.83 Aligned_cols=45 Identities=29% Similarity=0.784 Sum_probs=32.6
Q ss_pred eeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCC
Q 022029 212 FICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKE 261 (304)
Q Consensus 212 ~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~ 261 (304)
-.|.-|...+.=.. -+.+|-||||++|... ..++.||.|+.++.+
T Consensus 91 HfCd~Cd~PI~IYG---RmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYG---RMIPCKHVFCLECARS--DSDKICPLCDDRVQR 135 (389)
T ss_pred EeecccCCcceeee---cccccchhhhhhhhhc--CccccCcCcccHHHH
Confidence 35677777653322 2679999999999664 357799999987754
No 92
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=93.51 E-value=0.02 Score=52.50 Aligned_cols=51 Identities=25% Similarity=0.661 Sum_probs=38.0
Q ss_pred ceeccCccc--cccCCcceEEEcc-CCccchHHHHHHHhh-cCCCCC--CCCCCCCCC
Q 022029 211 SFICPSCKV--TLTNTLSLVALSS-CGHVFCKKCADKFMA-VDKVCL--VCNKPCKER 262 (304)
Q Consensus 211 ~~~CPIc~k--~~~~~~~~v~l~~-CGhVfc~~Ci~~~~k-~~~~CP--vC~~~f~~~ 262 (304)
.-.||||+. .++...++. +.| |=|.+|.+|+++++. ..-.|| -|++.+.+.
T Consensus 10 d~~CPvCksDrYLnPdik~l-inPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~ 66 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKIL-INPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKI 66 (314)
T ss_pred cccCCccccccccCCCeEEE-ECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHh
Confidence 358999985 344455544 555 999999999999875 556899 898876553
No 93
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=93.39 E-value=0.11 Score=36.03 Aligned_cols=42 Identities=21% Similarity=0.604 Sum_probs=31.2
Q ss_pred eccCccccccCCcceEEEccCC-----ccchHHHHHHHhh--cCCCCCCCC
Q 022029 213 ICPSCKVTLTNTLSLVALSSCG-----HVFCKKCADKFMA--VDKVCLVCN 256 (304)
Q Consensus 213 ~CPIc~k~~~~~~~~v~l~~CG-----hVfc~~Ci~~~~k--~~~~CPvC~ 256 (304)
+|-||....++... ++.||. |.+-..|+.+|+. ....||+|+
T Consensus 1 ~CrIC~~~~~~~~~--l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDP--LVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCe--eEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48899884444332 467985 7899999999985 456899995
No 94
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=0.051 Score=52.36 Aligned_cols=47 Identities=23% Similarity=0.622 Sum_probs=38.9
Q ss_pred CceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCK 260 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~ 260 (304)
..-.||||.-.--+. ++.||||--|+.||.+.+.+.+.|..|.....
T Consensus 421 Ed~lCpICyA~pi~A----vf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINA----VFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchh----hccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 456899998755554 68999999999999998888889999987554
No 95
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=93.09 E-value=0.012 Score=43.98 Aligned_cols=49 Identities=22% Similarity=0.508 Sum_probs=23.4
Q ss_pred eeccCcccccc-C-CcceEEE--ccCCccchHHHHHHHhhc---C--------CCCCCCCCCCC
Q 022029 212 FICPSCKVTLT-N-TLSLVAL--SSCGHVFCKKCADKFMAV---D--------KVCLVCNKPCK 260 (304)
Q Consensus 212 ~~CPIc~k~~~-~-~~~~v~l--~~CGhVfc~~Ci~~~~k~---~--------~~CPvC~~~f~ 260 (304)
..|+||...+. + ....++- ..||++|-..||.+|+.. . +.||.|+.+++
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 57999999765 3 2222333 389999999999999752 1 36999998874
No 96
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=93.08 E-value=0.044 Score=38.25 Aligned_cols=43 Identities=26% Similarity=0.595 Sum_probs=21.7
Q ss_pred eeccCccccccCCcceEEEccCCccchHHHHHHHhh-----cCCCCCCCCCC
Q 022029 212 FICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA-----VDKVCLVCNKP 258 (304)
Q Consensus 212 ~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k-----~~~~CPvC~~~ 258 (304)
+.||++...+..+. -...|-|+-|.+- +.|+. ..+.||+|+++
T Consensus 3 L~CPls~~~i~~P~---Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPV---RGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEE---EETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCc---cCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 68999999998884 4779999976544 22221 46899999874
No 97
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.69 E-value=0.027 Score=59.15 Aligned_cols=51 Identities=29% Similarity=0.703 Sum_probs=41.3
Q ss_pred eeccCccccccCCcceEEEccCCccchHHHHHHHhh--cCCCCCCCCCCCCCCCceEe
Q 022029 212 FICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA--VDKVCLVCNKPCKERNLVNV 267 (304)
Q Consensus 212 ~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k--~~~~CPvC~~~f~~~diI~L 267 (304)
+.|++|.+ ... +++..|||+||.+|+.+.+. ....||+|+..+..++++..
T Consensus 455 ~~c~ic~~-~~~----~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~ 507 (674)
T KOG1001|consen 455 HWCHICCD-LDS----FFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSA 507 (674)
T ss_pred cccccccc-ccc----ceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhc
Confidence 89999999 333 36889999999999999875 34579999998887766654
No 98
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.07 E-value=0.076 Score=51.24 Aligned_cols=44 Identities=25% Similarity=0.568 Sum_probs=32.3
Q ss_pred CceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCK 260 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~ 260 (304)
-...|-||.+.+-+. +.-+|||+.| |..-. +....||+|+..+.
T Consensus 304 ~p~lcVVcl~e~~~~----~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSA----VFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccce----eeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 456899999988874 4669999988 65442 23456999998654
No 99
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.06 E-value=0.044 Score=51.03 Aligned_cols=50 Identities=20% Similarity=0.532 Sum_probs=37.5
Q ss_pred eeccCccccccCCc-------ceEEEccCCccchHHHHHHHh--hcCCCCCCCCCCCCCC
Q 022029 212 FICPSCKVTLTNTL-------SLVALSSCGHVFCKKCADKFM--AVDKVCLVCNKPCKER 262 (304)
Q Consensus 212 ~~CPIc~k~~~~~~-------~~v~l~~CGhVfc~~Ci~~~~--k~~~~CPvC~~~f~~~ 262 (304)
-.|.||...|.... + .+--.|+|||-+-||+-|. -+...||.|.+.++-+
T Consensus 225 ~vCaVCg~~~~~s~~eegvien-ty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 225 SVCAVCGQQIDVSVDEEGVIEN-TYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred chhHhhcchheeecchhhhhhh-heeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 47888887775442 1 2445899999999999995 3667999999887643
No 100
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=91.66 E-value=0.096 Score=35.22 Aligned_cols=30 Identities=27% Similarity=0.826 Sum_probs=24.8
Q ss_pred ceecccCCC---CCceecCCCceeehhhHHHHH
Q 022029 42 ACCLCLKPF---IDPLCCQKGHIYCKECILECL 71 (304)
Q Consensus 42 ~C~LcL~p~---~dPV~t~~G~lyckEcIle~l 71 (304)
.|.+|+.+. +.|++++-||+||.+||....
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~ 33 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK 33 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc
Confidence 377788877 467899999999999998754
No 101
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=91.41 E-value=0.18 Score=37.86 Aligned_cols=34 Identities=35% Similarity=0.785 Sum_probs=27.0
Q ss_pred cceecccCCCCCc------------e-ecCCCceeehhhHHHHHHHh
Q 022029 41 DACCLCLKPFIDP------------L-CCQKGHIYCKECILECLLSQ 74 (304)
Q Consensus 41 ~~C~LcL~p~~dP------------V-~t~~G~lyckEcIle~ll~q 74 (304)
|.|++|+.++.+| | ..+-||.|-..||.+||..+
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~ 66 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN 66 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC
Confidence 5699999999444 3 34579999999999998543
No 102
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.22 E-value=0.12 Score=50.11 Aligned_cols=51 Identities=27% Similarity=0.640 Sum_probs=40.6
Q ss_pred CceeccCccccccCCc----ceEEEccCCccchHHHHHHHh--hc-----CCCCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTNTL----SLVALSSCGHVFCKKCADKFM--AV-----DKVCLVCNKPCK 260 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~----~~v~l~~CGhVfc~~Ci~~~~--k~-----~~~CPvC~~~f~ 260 (304)
....|-||++...... ++-.+.+|-|.||..||..|- .+ ...||.|+....
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 4679999999888763 234457899999999999996 34 479999998765
No 103
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.85 E-value=0.13 Score=48.60 Aligned_cols=42 Identities=29% Similarity=0.722 Sum_probs=34.6
Q ss_pred cccCCCCcCCCcceecccCCCCCceecCCCceeehhhHHHHHH
Q 022029 30 ERLGKDSIKPFDACCLCLKPFIDPLCCQKGHIYCKECILECLL 72 (304)
Q Consensus 30 ~Rlg~ds~~~F~~C~LcL~p~~dPV~t~~G~lyckEcIle~ll 72 (304)
.-.+.+-..||. |-+|-+++.+||+|..||-||.-|.+..+-
T Consensus 232 ~~~~D~~~~Pf~-c~icr~~f~~pVvt~c~h~fc~~ca~~~~q 273 (313)
T KOG1813|consen 232 VKIEDIELLPFK-CFICRKYFYRPVVTKCGHYFCEVCALKPYQ 273 (313)
T ss_pred eecCCcccCCcc-ccccccccccchhhcCCceeehhhhccccc
Confidence 444445567775 789999999999999999999999998764
No 104
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.34 E-value=0.036 Score=52.12 Aligned_cols=42 Identities=24% Similarity=0.711 Sum_probs=34.0
Q ss_pred ceeccCccccccCCcceEEEccCCccc-hHHHHHHHhhcCCCCCCCCCCCC
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVF-CKKCADKFMAVDKVCLVCNKPCK 260 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVf-c~~Ci~~~~k~~~~CPvC~~~f~ 260 (304)
+.+|.||++.-.+- ++.+|||.+ |.+|-+.+. .||+|++.+.
T Consensus 300 ~~LC~ICmDaP~DC----vfLeCGHmVtCt~CGkrm~----eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDC----VFLECGHMVTCTKCGKRMN----ECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcce----EEeecCcEEeehhhccccc----cCchHHHHHH
Confidence 78999999988774 577999955 888877642 8999998764
No 105
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=90.15 E-value=0.16 Score=47.66 Aligned_cols=48 Identities=27% Similarity=0.690 Sum_probs=41.7
Q ss_pred CceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNK 257 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~ 257 (304)
....||+|...+......+-.-+|||..-..|+++.+.....||+|.+
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 456699999988887666677899999999999999876699999999
No 106
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=89.86 E-value=0.15 Score=53.53 Aligned_cols=36 Identities=25% Similarity=0.659 Sum_probs=31.3
Q ss_pred cCCCcceecccCCCCCceecCCCceeehhhHHHHHH
Q 022029 37 IKPFDACCLCLKPFIDPLCCQKGHIYCKECILECLL 72 (304)
Q Consensus 37 ~~~F~~C~LcL~p~~dPV~t~~G~lyckEcIle~ll 72 (304)
++..--|.+|-....|-|++..||+||-+||=..+-
T Consensus 640 yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~e 675 (698)
T KOG0978|consen 640 YKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYE 675 (698)
T ss_pred HHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHH
Confidence 355667999999999999999999999999987654
No 107
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=89.09 E-value=0.12 Score=52.30 Aligned_cols=36 Identities=33% Similarity=0.525 Sum_probs=32.0
Q ss_pred CCCcceecccCCCCCceecCCCceeehhhHHHHHHH
Q 022029 38 KPFDACCLCLKPFIDPLCCQKGHIYCKECILECLLS 73 (304)
Q Consensus 38 ~~F~~C~LcL~p~~dPV~t~~G~lyckEcIle~ll~ 73 (304)
..---|.||--|+.||+.+..-|.|||-||-||+..
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~ 569 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVES 569 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHh
Confidence 334579999999999999999999999999999753
No 108
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.49 E-value=0.2 Score=49.43 Aligned_cols=75 Identities=20% Similarity=0.398 Sum_probs=45.5
Q ss_pred CCCcceecccCCCCCceecCCCceeehhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 022029 38 KPFDACCLCLKPFIDPLCCQKGHIYCKECILECLLSQKKDIQRKLVAHAAQQKQEKEEEEERLMLQKARELDAFDQQNHG 117 (304)
Q Consensus 38 ~~F~~C~LcL~p~~dPV~t~~G~lyckEcIle~ll~qkkei~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~ 117 (304)
++|. |++|...+..||+||.||-||..||.. .|+|..+.---..++..-. ..+...-........+.+|......
T Consensus 83 sef~-c~vc~~~l~~pv~tpcghs~c~~Cl~r-~ld~~~~cp~Cr~~l~e~~---~~~~~~~~~r~~~~li~~F~~~~~~ 157 (398)
T KOG4159|consen 83 SEFE-CCVCSRALYPPVVTPCGHSFCLECLDR-SLDQETECPLCRDELVELP---ALEQALSLNRLLCKLITKFLEGSSS 157 (398)
T ss_pred chhh-hhhhHhhcCCCccccccccccHHHHHH-HhccCCCCcccccccccch---HHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 4454 559999999999999999999999888 5556544322111111100 0111111345566777888766554
No 109
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.43 E-value=0.47 Score=45.82 Aligned_cols=47 Identities=28% Similarity=0.680 Sum_probs=37.5
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHHH--hhcCCCCCCCCCCC
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKF--MAVDKVCLVCNKPC 259 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~--~k~~~~CPvC~~~f 259 (304)
+...+|-||-..++- +.+.||||-+|.-|--++ +-....||+|+..-
T Consensus 59 Een~~C~ICA~~~TY----s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 59 EENMNCQICAGSTTY----SARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccceeEEecCCceE----EEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 456799999887755 468899999999998776 33677999999754
No 110
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.05 E-value=0.16 Score=45.62 Aligned_cols=34 Identities=26% Similarity=0.697 Sum_probs=30.2
Q ss_pred CCCcceecccCCCCCceecCCCceeehhhHHHHH
Q 022029 38 KPFDACCLCLKPFIDPLCCQKGHIYCKECILECL 71 (304)
Q Consensus 38 ~~F~~C~LcL~p~~dPV~t~~G~lyckEcIle~l 71 (304)
-..-.|.+||..+.+|++.+.||-||+.||-..+
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~ 44 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSW 44 (386)
T ss_pred cccccChhhHHHhhcCccccccchHhHHHHHHhc
Confidence 3467899999999999999999999999997765
No 111
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=87.98 E-value=0.72 Score=32.83 Aligned_cols=47 Identities=21% Similarity=0.591 Sum_probs=38.8
Q ss_pred CceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCC--CCCCCC
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLV--CNKPCK 260 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPv--C~~~f~ 260 (304)
....|++|.+.|.+...+|+-..||-++-.+|.... ..|-+ |+.+|.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~----g~C~~~~c~~~~~ 52 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKA----GGCINYSCGTGFE 52 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhhC----CceEeccCCCCcc
Confidence 356899999999887789999999999999997763 56766 777764
No 112
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=87.97 E-value=0.26 Score=45.63 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=38.4
Q ss_pred CceeccCccccccCCcceEEEccCCccchHHHHHHHhhc--CCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAV--DKVCLVCNKP 258 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~--~~~CPvC~~~ 258 (304)
-...||++++.+-|+ ++.+.|||||=...|..++.. ...||+=+..
T Consensus 175 fs~rdPis~~~I~nP---viSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNP---VISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hcccCchhhhhhhch---hhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 457899999999998 578999999999999998754 4689986654
No 113
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.93 E-value=0.27 Score=46.17 Aligned_cols=48 Identities=23% Similarity=0.650 Sum_probs=36.6
Q ss_pred eeccCccccccCC--cceEEEccCCccchHHHHHHHhh-cCCCCCCCCCCC
Q 022029 212 FICPSCKVTLTNT--LSLVALSSCGHVFCKKCADKFMA-VDKVCLVCNKPC 259 (304)
Q Consensus 212 ~~CPIc~k~~~~~--~~~v~l~~CGhVfc~~Ci~~~~k-~~~~CPvC~~~f 259 (304)
+.|-||...|++. .++=-+..|||.||..|+..++. ....||.|+.+-
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 5788999888764 23323446999999999999875 345889999883
No 114
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=87.88 E-value=0.39 Score=40.44 Aligned_cols=43 Identities=19% Similarity=0.405 Sum_probs=31.3
Q ss_pred ceeccCccccccCCcceEEEccCC------ccchHHHHHHHhhcCCCCCC
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCG------HVFCKKCADKFMAVDKVCLV 254 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CG------hVfc~~Ci~~~~k~~~~CPv 254 (304)
...|.||.+.+.+..- |+..+|| |+||.+|+++|-.....+|-
T Consensus 26 ~~EC~IC~~~I~~~~G-vV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPf 74 (134)
T PF05883_consen 26 TVECQICFDRIDNNDG-VVYVTDGGTLNLEKMFCADCDKRWRRERNRDPF 74 (134)
T ss_pred CeeehhhhhhhhcCCC-EEEEecCCeehHHHHHHHHHHHHHHhhccCCCc
Confidence 5789999999999434 4445666 89999999998544444443
No 115
>PHA02524 43A DNA polymerase subunit A; Provisional
Probab=86.81 E-value=1.8 Score=44.12 Aligned_cols=42 Identities=24% Similarity=0.312 Sum_probs=34.2
Q ss_pred CCCCceecCCCceeehh------hHHHHHHHhhHHHHHHHHHHHHHHH
Q 022029 49 PFIDPLCCQKGHIYCKE------CILECLLSQKKDIQRKLVAHAAQQK 90 (304)
Q Consensus 49 p~~dPV~t~~G~lyckE------cIle~ll~qkkei~r~~~~~e~~~~ 90 (304)
|-.+=+++|.||-|+|+ -||+.||++||++|+.+++.++..+
T Consensus 436 ~~~~~~~~P~G~~F~K~~~GilP~iLe~Ll~~RK~~Kk~M~~a~~~~~ 483 (498)
T PHA02524 436 PSDQFSCAPNGMMYKKGVVGVLPNETEKVFLQRKSEKKMMLAAIRNQE 483 (498)
T ss_pred CCcceEECCCCCEEecCCCcccHHHHHHHHHHHHHHHHHHHHhHhhHH
Confidence 33455689999999997 6999999999999999999655443
No 116
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.73 E-value=3 Score=44.70 Aligned_cols=41 Identities=24% Similarity=0.587 Sum_probs=33.6
Q ss_pred eccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCC
Q 022029 213 ICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPC 259 (304)
Q Consensus 213 ~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f 259 (304)
.|..|.-.+.=| +|.--|||.|-..|+. .+...||-|....
T Consensus 842 kCs~C~~~LdlP---~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 842 KCSACEGTLDLP---FVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eecccCCccccc---eeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 688888888776 4677899999999998 3567999999854
No 117
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=86.39 E-value=0.59 Score=44.55 Aligned_cols=46 Identities=26% Similarity=0.624 Sum_probs=36.2
Q ss_pred CceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKE 261 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~ 261 (304)
.-+-||||...+.-+. +--.=||..|..|-.++ ...||.|+.++..
T Consensus 47 ~lleCPvC~~~l~~Pi---~QC~nGHlaCssC~~~~---~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPI---FQCDNGHLACSSCRTKV---SNKCPTCRLPIGN 92 (299)
T ss_pred hhccCchhhccCcccc---eecCCCcEehhhhhhhh---cccCCcccccccc
Confidence 3578999999998882 23344999999997654 4689999999984
No 118
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.53 E-value=0.34 Score=44.90 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=34.1
Q ss_pred CcCCCcceecccCCCCCceecCCCceeehhhHHHHHH
Q 022029 36 SIKPFDACCLCLKPFIDPLCCQKGHIYCKECILECLL 72 (304)
Q Consensus 36 s~~~F~~C~LcL~p~~dPV~t~~G~lyckEcIle~ll 72 (304)
.+.+|-||.|+|.=+++||+||.|.-|++..|.|.|-
T Consensus 207 Evpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~ 243 (284)
T KOG4642|consen 207 EVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQ 243 (284)
T ss_pred cccchhhhhhhHHhhcCCccCccccchhHHHHHHHHH
Confidence 3567999999999999999999999999999999874
No 119
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=85.16 E-value=0.51 Score=49.45 Aligned_cols=56 Identities=21% Similarity=0.357 Sum_probs=41.1
Q ss_pred CCCceeccCccccccCCcceEEEccCCccchHHHHHHHh----hcCCCCCCCCCCCCCCCceE
Q 022029 208 NDKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFM----AVDKVCLVCNKPCKERNLVN 266 (304)
Q Consensus 208 ~~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~----k~~~~CPvC~~~f~~~diI~ 266 (304)
..-.+.||+++..+.-+.+ --.|.|+=|...+.-+- +..|.||||.+.+.-+++|.
T Consensus 303 ~~vSL~CPl~~~Rm~~P~r---~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~i 362 (636)
T KOG2169|consen 303 LRVSLNCPLSKMRMSLPAR---GHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLII 362 (636)
T ss_pred ceeEecCCcccceeecCCc---ccccccceecchhhhHHhccCCCeeeCccCCccccccchhh
Confidence 4557999999998877744 34788888776655432 24689999999988766544
No 120
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=84.69 E-value=4.9 Score=35.90 Aligned_cols=36 Identities=11% Similarity=0.271 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 022029 83 VAHAAQQKQEKEEEEERLMLQKARELDAFDQQNHGA 118 (304)
Q Consensus 83 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~ 118 (304)
.+|+++.+..++++.+++++.|+++|+.++.-+.|.
T Consensus 94 EE~dakA~~~kEKq~q~EEEKRrqkie~we~~q~Gk 129 (190)
T PF06936_consen 94 EELDAKAEEYKEKQKQEEEEKRRQKIEMWESMQEGK 129 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666777777888888888766644
No 121
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=84.04 E-value=0.54 Score=46.10 Aligned_cols=48 Identities=19% Similarity=0.527 Sum_probs=37.7
Q ss_pred CceeccCccccccCCcceEEEccCCccchHHHHHHHhh--cCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA--VDKVCLVCNK 257 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k--~~~~CPvC~~ 257 (304)
-.+-|-.|.+.+.-...-.-.-||.|+|-.+|+.+++. ....||.|++
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 45789999998766433334569999999999999875 3569999994
No 122
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=83.32 E-value=0.73 Score=31.95 Aligned_cols=31 Identities=23% Similarity=0.687 Sum_probs=22.5
Q ss_pred EccCCccchHHHHHHHhhcCCCCCCCCCCCC
Q 022029 230 LSSCGHVFCKKCADKFMAVDKVCLVCNKPCK 260 (304)
Q Consensus 230 l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~ 260 (304)
++=.-|-+|..|+..++..+..||+|+.++-
T Consensus 16 i~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp EE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred eeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 3334689999999998888889999998874
No 123
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=82.95 E-value=1.1 Score=28.36 Aligned_cols=11 Identities=45% Similarity=0.939 Sum_probs=8.7
Q ss_pred cCCCCCCCCCC
Q 022029 248 VDKVCLVCNKP 258 (304)
Q Consensus 248 ~~~~CPvC~~~ 258 (304)
..+.||+|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 56789999874
No 124
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=82.55 E-value=0.45 Score=33.40 Aligned_cols=39 Identities=26% Similarity=0.726 Sum_probs=24.6
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHHHhh--cCCCCCCCCCCCC
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA--VDKVCLVCNKPCK 260 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k--~~~~CPvC~~~f~ 260 (304)
.|.||.|.+.|+.. .+..-|.+.-.. ....||+|...+.
T Consensus 2 ~f~CP~C~~~~~~~-----------~L~~H~~~~H~~~~~~v~CPiC~~~~~ 42 (54)
T PF05605_consen 2 SFTCPYCGKGFSES-----------SLVEHCEDEHRSESKNVVCPICSSRVT 42 (54)
T ss_pred CcCCCCCCCccCHH-----------HHHHHHHhHCcCCCCCccCCCchhhhh
Confidence 58999999966543 134444443321 3468999997654
No 125
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=80.93 E-value=1.7 Score=34.96 Aligned_cols=32 Identities=31% Similarity=0.652 Sum_probs=27.7
Q ss_pred EEEccCCccchHHHHHHHhhcCCCCCCCCCCC
Q 022029 228 VALSSCGHVFCKKCADKFMAVDKVCLVCNKPC 259 (304)
Q Consensus 228 v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f 259 (304)
|+--.|.|.|-..||.+|++....||+|.++-
T Consensus 76 VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 76 VAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred EEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 34447999999999999999999999998864
No 126
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=80.60 E-value=0.82 Score=49.44 Aligned_cols=49 Identities=20% Similarity=0.455 Sum_probs=37.4
Q ss_pred CceeccCccccccC-----CcceEEEccCCccchHHHHHHHhh--cCCCCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTN-----TLSLVALSSCGHVFCKKCADKFMA--VDKVCLVCNKPCK 260 (304)
Q Consensus 210 ~~~~CPIc~k~~~~-----~~~~v~l~~CGhVfc~~Ci~~~~k--~~~~CPvC~~~f~ 260 (304)
+.-.|+||..++.- +++ .-.+|-|-|...|+.+|++ ....||+|+..|+
T Consensus 1468 G~eECaICYsvL~~vdr~lPsk--rC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSK--RCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCcc--ccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 45689999987751 221 2357889999999999987 4579999997765
No 128
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=80.55 E-value=2.9 Score=29.93 Aligned_cols=49 Identities=24% Similarity=0.524 Sum_probs=35.0
Q ss_pred eeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCCC
Q 022029 212 FICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKER 262 (304)
Q Consensus 212 ~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~ 262 (304)
-.|-.|.+.+-..+.-++|=.=-+.||..|.+.++ ...||.||-.|...
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 45777777776655333443345689999999976 56899999988654
No 129
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=80.31 E-value=0.7 Score=42.89 Aligned_cols=31 Identities=26% Similarity=0.579 Sum_probs=27.3
Q ss_pred ceecccCCCCCceecC-CCceeehhhHHHHHH
Q 022029 42 ACCLCLKPFIDPLCCQ-KGHIYCKECILECLL 72 (304)
Q Consensus 42 ~C~LcL~p~~dPV~t~-~G~lyckEcIle~ll 72 (304)
-|-+++.|...||+.. .||+|+|..|.++|-
T Consensus 178 rdPis~~~I~nPviSkkC~HvydrDsI~~~l~ 209 (262)
T KOG2979|consen 178 RDPISKKPIVNPVISKKCGHVYDRDSIMQILC 209 (262)
T ss_pred cCchhhhhhhchhhhcCcCcchhhhhHHHHhc
Confidence 4788899999999665 599999999999886
No 130
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=79.42 E-value=2.3 Score=36.84 Aligned_cols=60 Identities=22% Similarity=0.460 Sum_probs=43.2
Q ss_pred CceeccCccccccCCcceEEEccCCc-----cchHHHHHHHhh--cCCCCCCCCCCCCCCCceEecCCCcccccc
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGH-----VFCKKCADKFMA--VDKVCLVCNKPCKERNLVNVEKGGTGFAAH 277 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGh-----Vfc~~Ci~~~~k--~~~~CPvC~~~f~~~diI~L~~~gtgfaa~ 277 (304)
....|-||.+.-.. ...||.+ .+-.+|+++|+. ....|++|+.+|. +.....+.+....+
T Consensus 7 ~~~~CRIC~~~~~~-----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~---i~~~~kpl~~W~~~ 73 (162)
T PHA02825 7 MDKCCWICKDEYDV-----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN---IKKNYKKCTKWRCS 73 (162)
T ss_pred CCCeeEecCCCCCC-----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE---EEEecCCCcccccc
Confidence 45689999887432 2468877 568999999986 4679999999995 45555555555443
No 131
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=79.36 E-value=1.8 Score=33.04 Aligned_cols=52 Identities=23% Similarity=0.466 Sum_probs=23.2
Q ss_pred CceeccCccccccC---CcceEEEccCCccchHHHHHHHhh-cCCCCCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTN---TLSLVALSSCGHVFCKKCADKFMA-VDKVCLVCNKPCKE 261 (304)
Q Consensus 210 ~~~~CPIc~k~~~~---~~~~v~l~~CGhVfc~~Ci~~~~k-~~~~CPvC~~~f~~ 261 (304)
+.-+|-||.+...- ..-||+--.||--+|..|++=-.+ ....||.|+.+|+.
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 35699999986532 346788889999999999874444 56799999999974
No 132
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.89 E-value=0.74 Score=47.78 Aligned_cols=41 Identities=20% Similarity=0.512 Sum_probs=31.8
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCC
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCL 253 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CP 253 (304)
-..|+||.-.|-+....=+...|||++|..|++.+- +..||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC
Confidence 357999988887765555567899999999999874 34577
No 133
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=78.80 E-value=1.2 Score=31.16 Aligned_cols=34 Identities=29% Similarity=0.626 Sum_probs=26.1
Q ss_pred eeccCccccccCCcceEEEccCCccchHHHHHHH
Q 022029 212 FICPSCKVTLTNTLSLVALSSCGHVFCKKCADKF 245 (304)
Q Consensus 212 ~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~ 245 (304)
-.|++|.+.|+-..+-.--+.||++||..|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 3689999988775433446789999999998764
No 134
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=78.26 E-value=0.87 Score=43.22 Aligned_cols=34 Identities=35% Similarity=0.699 Sum_probs=30.0
Q ss_pred cceecccCCCCCceecCC-CceeehhhHHHHHHHh
Q 022029 41 DACCLCLKPFIDPLCCQK-GHIYCKECILECLLSQ 74 (304)
Q Consensus 41 ~~C~LcL~p~~dPV~t~~-G~lyckEcIle~ll~q 74 (304)
-.|-||--=++.||-|+. ||+||+|||-.-||.-
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~ds 309 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDS 309 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhc
Confidence 579999988999999985 9999999999888853
No 135
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=78.02 E-value=0.92 Score=47.86 Aligned_cols=31 Identities=23% Similarity=0.606 Sum_probs=29.0
Q ss_pred cceecccCCCCCceecCCCceeehhhHHHHHH
Q 022029 41 DACCLCLKPFIDPLCCQKGHIYCKECILECLL 72 (304)
Q Consensus 41 ~~C~LcL~p~~dPV~t~~G~lyckEcIle~ll 72 (304)
..|.+|+. ..++|+|+.||.||.+|+.++|-
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~ 485 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQ 485 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccc
Confidence 88999999 88899999999999999999885
No 136
>PHA02926 zinc finger-like protein; Provisional
Probab=77.99 E-value=1.1 Score=40.81 Aligned_cols=32 Identities=25% Similarity=0.503 Sum_probs=26.8
Q ss_pred cceecccCCCCC---------ceecCCCceeehhhHHHHHH
Q 022029 41 DACCLCLKPFID---------PLCCQKGHIYCKECILECLL 72 (304)
Q Consensus 41 ~~C~LcL~p~~d---------PV~t~~G~lyckEcIle~ll 72 (304)
.-|++|+..+-+ +|..+.||.||..||-.|--
T Consensus 171 ~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~ 211 (242)
T PHA02926 171 KECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHR 211 (242)
T ss_pred CCCccCccccccccccccccccccCCCCchHHHHHHHHHHH
Confidence 789999987633 57788999999999999864
No 137
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.73 E-value=1.4 Score=40.79 Aligned_cols=31 Identities=10% Similarity=0.225 Sum_probs=28.2
Q ss_pred eeccCccccccCCcceEEEccCCccchHHHHHHHh
Q 022029 212 FICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFM 246 (304)
Q Consensus 212 ~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~ 246 (304)
-.|.+|+..+.++ ++.+-||+||.+||-++|
T Consensus 44 dcCsLtLqPc~dP----vit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 44 DCCSLTLQPCRDP----VITPDGYLFDREAILEYI 74 (303)
T ss_pred ceeeeecccccCC----ccCCCCeeeeHHHHHHHH
Confidence 4799999999999 689999999999998876
No 138
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=77.59 E-value=0.76 Score=41.21 Aligned_cols=32 Identities=31% Similarity=0.854 Sum_probs=28.3
Q ss_pred CCCcceecccCCCCCceecCCCceeehhhHHHH
Q 022029 38 KPFDACCLCLKPFIDPLCCQKGHIYCKECILEC 70 (304)
Q Consensus 38 ~~F~~C~LcL~p~~dPV~t~~G~lyckEcIle~ 70 (304)
.|| -|.||-...+.||+|..||-||-.|.+.-
T Consensus 195 IPF-~C~iCKkdy~spvvt~CGH~FC~~Cai~~ 226 (259)
T COG5152 195 IPF-LCGICKKDYESPVVTECGHSFCSLCAIRK 226 (259)
T ss_pred Cce-eehhchhhccchhhhhcchhHHHHHHHHH
Confidence 444 58999999999999999999999998764
No 139
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=76.54 E-value=0.81 Score=50.82 Aligned_cols=47 Identities=26% Similarity=0.679 Sum_probs=40.1
Q ss_pred CceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPC 259 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f 259 (304)
+.+.|++|.+.+.+.. .+..|||-+|..|+..|......||.|...+
T Consensus 1152 ~~~~c~ic~dil~~~~---~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQG---GIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred cccchHHHHHHHHhcC---CeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 4569999999998763 5779999999999999988888999998544
No 140
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=76.35 E-value=1 Score=42.62 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=32.0
Q ss_pred cceecccCCCCCceecCCCceeehhhHHHHHHHhh
Q 022029 41 DACCLCLKPFIDPLCCQKGHIYCKECILECLLSQK 75 (304)
Q Consensus 41 ~~C~LcL~p~~dPV~t~~G~lyckEcIle~ll~qk 75 (304)
.-|.+|---+.-||.|+.||-||--||-.||=+|-
T Consensus 26 lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp 60 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQP 60 (391)
T ss_pred HHhhhhhheeecceecccccchhHHHHHHHhcCCC
Confidence 46999999999999999999999999999998764
No 141
>PHA02862 5L protein; Provisional
Probab=76.29 E-value=2.3 Score=36.31 Aligned_cols=44 Identities=25% Similarity=0.500 Sum_probs=34.3
Q ss_pred eeccCccccccCCcceEEEccCCc-----cchHHHHHHHhh--cCCCCCCCCCCCC
Q 022029 212 FICPSCKVTLTNTLSLVALSSCGH-----VFCKKCADKFMA--VDKVCLVCNKPCK 260 (304)
Q Consensus 212 ~~CPIc~k~~~~~~~~v~l~~CGh-----Vfc~~Ci~~~~k--~~~~CPvC~~~f~ 260 (304)
-+|-||...-... ..||.+ .+-++|+.+|+. ....|+.|+.+|.
T Consensus 3 diCWIC~~~~~e~-----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER-----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC-----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 3788998875443 467765 678999999986 4569999999995
No 142
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=75.90 E-value=0.85 Score=44.00 Aligned_cols=33 Identities=27% Similarity=0.651 Sum_probs=30.4
Q ss_pred ceecccCCCCCceecCCCceeehhhHHHHHHHh
Q 022029 42 ACCLCLKPFIDPLCCQKGHIYCKECILECLLSQ 74 (304)
Q Consensus 42 ~C~LcL~p~~dPV~t~~G~lyckEcIle~ll~q 74 (304)
-|.+|..=+.-||+||.||-||--||-.||--|
T Consensus 25 RC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~ 57 (442)
T KOG0287|consen 25 RCGICFEYFNIPMITPCSHTFCSLCIRKFLSYK 57 (442)
T ss_pred HHhHHHHHhcCceeccccchHHHHHHHHHhccC
Confidence 599999999999999999999999999998654
No 143
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=75.48 E-value=0.81 Score=33.39 Aligned_cols=34 Identities=21% Similarity=0.493 Sum_probs=17.7
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHH
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADK 244 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~ 244 (304)
.-.|.+|.+.|+--.+-.--+.||++||..|...
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-E
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCC
Confidence 4589999999965444445678999999888654
No 144
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=75.05 E-value=1.4 Score=32.50 Aligned_cols=31 Identities=32% Similarity=1.024 Sum_probs=16.8
Q ss_pred cceecccCCCCCcee-cCCCceeehhhHHHHH
Q 022029 41 DACCLCLKPFIDPLC-CQKGHIYCKECILECL 71 (304)
Q Consensus 41 ~~C~LcL~p~~dPV~-t~~G~lyckEcIle~l 71 (304)
-.|+.|..-++.||+ +.-.|+||.-||=..|
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~ 39 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCI 39 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGGT
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHhc
Confidence 359999999999996 6679999999995543
No 145
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=74.04 E-value=2.5 Score=40.61 Aligned_cols=51 Identities=29% Similarity=0.511 Sum_probs=41.5
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCC
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKE 261 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~ 261 (304)
.-.||+|.........-++--+||+.+|..|+......+..||.|++++..
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 357999999775544445677999999999999988889999999977654
No 146
>PLN02189 cellulose synthase
Probab=73.96 E-value=2.7 Score=46.10 Aligned_cols=51 Identities=22% Similarity=0.448 Sum_probs=40.3
Q ss_pred CceeccCccccccC---CcceEEEccCCccchHHHHHHHhh-cCCCCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTN---TLSLVALSSCGHVFCKKCADKFMA-VDKVCLVCNKPCK 260 (304)
Q Consensus 210 ~~~~CPIc~k~~~~---~~~~v~l~~CGhVfc~~Ci~~~~k-~~~~CPvC~~~f~ 260 (304)
+.-+|.||.+.+.- .-.||+-..||--+|..|++--.+ .+..||.|++.|+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 45699999998642 347788889999999999953233 5679999999998
No 147
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=73.86 E-value=0.99 Score=34.42 Aligned_cols=33 Identities=21% Similarity=0.517 Sum_probs=27.2
Q ss_pred EEccCCccchHHHHHHHhh---cCCCCCCCCCCCCC
Q 022029 229 ALSSCGHVFCKKCADKFMA---VDKVCLVCNKPCKE 261 (304)
Q Consensus 229 ~l~~CGhVfc~~Ci~~~~k---~~~~CPvC~~~f~~ 261 (304)
++--|-|.|-..||.+++. .+..||.|+..|..
T Consensus 47 v~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 47 VWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 3557999999999999975 45799999998753
No 148
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=73.53 E-value=2.5 Score=45.30 Aligned_cols=52 Identities=25% Similarity=0.533 Sum_probs=42.8
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHHHhh-------cCCCCCCCCCCCC
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA-------VDKVCLVCNKPCK 260 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k-------~~~~CPvC~~~f~ 260 (304)
...|.|-||.+.++-...+..-+.|=|||-..||++|.+ ..|+||.|.....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 467999999999988777666667889999999999964 2489999995554
No 149
>PLN02195 cellulose synthase A
Probab=71.84 E-value=4.5 Score=44.24 Aligned_cols=53 Identities=28% Similarity=0.582 Sum_probs=40.7
Q ss_pred CceeccCccccccC---CcceEEEccCCccchHHHHHHHhh-cCCCCCCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTN---TLSLVALSSCGHVFCKKCADKFMA-VDKVCLVCNKPCKER 262 (304)
Q Consensus 210 ~~~~CPIc~k~~~~---~~~~v~l~~CGhVfc~~Ci~~~~k-~~~~CPvC~~~f~~~ 262 (304)
+.-+|-||.+...- ...||+-..||--+|..|++==-+ .+..||.|+..|+++
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~~ 61 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDAE 61 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccccc
Confidence 34589999996532 347889999999999999842122 567999999999943
No 150
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.83 E-value=2.4 Score=45.60 Aligned_cols=36 Identities=22% Similarity=0.488 Sum_probs=29.4
Q ss_pred CceeccCccccccCCcceEEEccCCccchHHHHHHHhh
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA 247 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k 247 (304)
..-.|.+|...|-.. + .++-+|||-|-+.|+.+.+.
T Consensus 816 p~d~C~~C~~~ll~~-p-F~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK-P-FYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred CccchHHhcchhhcC-c-ceeeeccchHHHHHHHHHHH
Confidence 456899999988775 3 46789999999999998754
No 151
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=70.86 E-value=2.6 Score=41.64 Aligned_cols=37 Identities=30% Similarity=0.691 Sum_probs=32.4
Q ss_pred cCCCcceecccCCCCCceec-CCCceeehhhHHHHHHH
Q 022029 37 IKPFDACCLCLKPFIDPLCC-QKGHIYCKECILECLLS 73 (304)
Q Consensus 37 ~~~F~~C~LcL~p~~dPV~t-~~G~lyckEcIle~ll~ 73 (304)
+..=..|.+|-.++.||+-+ .-||-||..||.+++-.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~ 55 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN 55 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc
Confidence 44457899999999999974 88999999999999875
No 152
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=69.35 E-value=3.6 Score=46.77 Aligned_cols=52 Identities=17% Similarity=0.475 Sum_probs=39.3
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcC----------CCCCCCCCCCCC
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVD----------KVCLVCNKPCKE 261 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~----------~~CPvC~~~f~~ 261 (304)
++.-+|-||+..--....+ +-..|||+|-..|...++... +.||+|..++..
T Consensus 3484 D~DDmCmICFTE~L~AAP~-IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPA-IQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ccCceEEEEehhhhCCCcc-eecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 5677999999754443333 345899999999999876532 589999999864
No 153
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=69.31 E-value=3.4 Score=35.61 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=24.4
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCC
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKE 261 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~ 261 (304)
...|+||.|...|+-- +.+.....||+||.++..
T Consensus 107 ~~~Y~Cp~c~~r~tf~-------------------eA~~~~F~Cp~Cg~~L~~ 140 (158)
T TIGR00373 107 NMFFICPNMCVRFTFN-------------------EAMELNFTCPRCGAMLDY 140 (158)
T ss_pred CCeEECCCCCcEeeHH-------------------HHHHcCCcCCCCCCEeee
Confidence 4579999999876542 222346899999998764
No 154
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=69.12 E-value=3.5 Score=36.04 Aligned_cols=11 Identities=36% Similarity=1.072 Sum_probs=8.1
Q ss_pred cCCCCCCCCCC
Q 022029 248 VDKVCLVCNKP 258 (304)
Q Consensus 248 ~~~~CPvC~~~ 258 (304)
....||+|+.+
T Consensus 148 ~P~~CPiCga~ 158 (166)
T COG1592 148 APEVCPICGAP 158 (166)
T ss_pred CCCcCCCCCCh
Confidence 34689999965
No 155
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=68.71 E-value=4.2 Score=35.82 Aligned_cols=35 Identities=26% Similarity=0.564 Sum_probs=25.2
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCCC
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKER 262 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~ 262 (304)
...|+||.|...|+-- +.+...+.||+||..+...
T Consensus 115 ~~~Y~Cp~C~~rytf~-------------------eA~~~~F~Cp~Cg~~L~~~ 149 (178)
T PRK06266 115 NMFFFCPNCHIRFTFD-------------------EAMEYGFRCPQCGEMLEEY 149 (178)
T ss_pred CCEEECCCCCcEEeHH-------------------HHhhcCCcCCCCCCCCeec
Confidence 3579999999877553 1223478999999988653
No 156
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=68.01 E-value=2.6 Score=25.40 Aligned_cols=12 Identities=25% Similarity=0.927 Sum_probs=6.8
Q ss_pred eccCccccccCC
Q 022029 213 ICPSCKVTLTNT 224 (304)
Q Consensus 213 ~CPIc~k~~~~~ 224 (304)
.||.|...+...
T Consensus 2 ~CP~C~~~V~~~ 13 (26)
T PF10571_consen 2 TCPECGAEVPES 13 (26)
T ss_pred cCCCCcCCchhh
Confidence 366666655443
No 157
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=67.75 E-value=4.8 Score=39.73 Aligned_cols=54 Identities=9% Similarity=0.168 Sum_probs=48.2
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCCCCceEec
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKERNLVNVE 268 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~diI~L~ 268 (304)
-.+|.+++-.|.++ +-..-|-||=...|-.|+++...=|+.|+++.-+|+|.|+
T Consensus 40 ~~hC~lt~~Pfe~P----vC~~dg~vFd~~~Ivp~lkk~g~nP~tG~kl~~~dLIkL~ 93 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDP----VCTVDGTVFDLTAIVPWLKKHGTNPITGQKLDGKDLIKLK 93 (518)
T ss_pred hhhceeccccccCc----ccccCCcEEeeehhhHHHHHcCCCCCCCCccccccceeee
Confidence 46999999999998 4566799999999999999888889999999999999986
No 158
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=67.33 E-value=1.8 Score=42.63 Aligned_cols=56 Identities=29% Similarity=0.577 Sum_probs=0.0
Q ss_pred CceeccCccccc-----------------cCCcceEEEccCCccchHHHHHHHhh---c------CCCCCCCCCCCC-CC
Q 022029 210 KSFICPSCKVTL-----------------TNTLSLVALSSCGHVFCKKCADKFMA---V------DKVCLVCNKPCK-ER 262 (304)
Q Consensus 210 ~~~~CPIc~k~~-----------------~~~~~~v~l~~CGhVfc~~Ci~~~~k---~------~~~CPvC~~~f~-~~ 262 (304)
....||+|..+= ..++ .+..|||||.+.+.++-|.. + ...||.|..++. +.
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pt--haF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~ 404 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPT--HAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQ 404 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCc--eeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCC
Confidence 368999999641 1122 24569999999999887743 1 248999999996 33
Q ss_pred CceEe
Q 022029 263 NLVNV 267 (304)
Q Consensus 263 diI~L 267 (304)
..|.|
T Consensus 405 g~vrL 409 (416)
T PF04710_consen 405 GYVRL 409 (416)
T ss_dssp -----
T ss_pred CceEE
Confidence 44443
No 159
>PHA03096 p28-like protein; Provisional
Probab=67.29 E-value=3.6 Score=38.99 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=28.8
Q ss_pred eeccCccccccC----CcceEEEccCCccchHHHHHHHhh
Q 022029 212 FICPSCKVTLTN----TLSLVALSSCGHVFCKKCADKFMA 247 (304)
Q Consensus 212 ~~CPIc~k~~~~----~~~~v~l~~CGhVfc~~Ci~~~~k 247 (304)
-.|.||++.... ...+-.+..|-|+||..|+..|..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~ 218 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMT 218 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHH
Confidence 689999986543 235667889999999999999864
No 160
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=66.79 E-value=7.7 Score=37.30 Aligned_cols=57 Identities=23% Similarity=0.529 Sum_probs=37.8
Q ss_pred CCceeccCccccc-----------------cCCcceEEEccCCccchHHHHHHHhh---c------CCCCCCCCCCCC-C
Q 022029 209 DKSFICPSCKVTL-----------------TNTLSLVALSSCGHVFCKKCADKFMA---V------DKVCLVCNKPCK-E 261 (304)
Q Consensus 209 ~~~~~CPIc~k~~-----------------~~~~~~v~l~~CGhVfc~~Ci~~~~k---~------~~~CPvC~~~f~-~ 261 (304)
...-.||+|..+= ..+++ +..|||||-+.+.+.=|.. + +..||.|...+. +
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pth--aF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTH--AFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCccc--ccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 3467899998641 11111 3469999999888776643 1 358999999884 5
Q ss_pred CCceEe
Q 022029 262 RNLVNV 267 (304)
Q Consensus 262 ~diI~L 267 (304)
...|.|
T Consensus 417 ~~~ikl 422 (429)
T KOG3842|consen 417 QGYIKL 422 (429)
T ss_pred CceEEE
Confidence 555554
No 161
>PLN02436 cellulose synthase A
Probab=66.65 E-value=4.7 Score=44.47 Aligned_cols=51 Identities=20% Similarity=0.477 Sum_probs=40.2
Q ss_pred CceeccCcccccc---CCcceEEEccCCccchHHHHHHHhh-cCCCCCCCCCCCC
Q 022029 210 KSFICPSCKVTLT---NTLSLVALSSCGHVFCKKCADKFMA-VDKVCLVCNKPCK 260 (304)
Q Consensus 210 ~~~~CPIc~k~~~---~~~~~v~l~~CGhVfc~~Ci~~~~k-~~~~CPvC~~~f~ 260 (304)
+.-+|.||.+... +.-.||+-.-||--+|..|++--.+ .+..||.|++.|+
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4569999999753 2347888899999999999953232 5679999999998
No 162
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.04 E-value=3 Score=41.13 Aligned_cols=54 Identities=22% Similarity=0.500 Sum_probs=35.2
Q ss_pred CceeccCccccccCCcceEEEccCCccchHHHHHHHhh------cCCCCCC--CCCCCCCCC
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA------VDKVCLV--CNKPCKERN 263 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k------~~~~CPv--C~~~f~~~d 263 (304)
....|.||......+-....+..|||-||.+|+++++. ....||. |...++..+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~ 206 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLES 206 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHH
Confidence 35789999954444322233679999999999999875 2346643 455555443
No 163
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=63.06 E-value=9.7 Score=26.78 Aligned_cols=26 Identities=31% Similarity=0.763 Sum_probs=14.9
Q ss_pred EccCCccchHHHHHHHhhc-CCCCCCCC
Q 022029 230 LSSCGHVFCKKCADKFMAV-DKVCLVCN 256 (304)
Q Consensus 230 l~~CGhVfc~~Ci~~~~k~-~~~CPvC~ 256 (304)
-..|+++||.+| +-++.. -..||-|.
T Consensus 24 C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 24 CPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp -TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CCCCCCccccCc-ChhhhccccCCcCCC
Confidence 457889999999 666653 35799874
No 164
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=62.65 E-value=35 Score=31.40 Aligned_cols=40 Identities=20% Similarity=0.579 Sum_probs=29.2
Q ss_pred eecccCCCCCceecCCCceeehhhHHHHHHHhhHHHHHHHHHHHHHHH
Q 022029 43 CCLCLKPFIDPLCCQKGHIYCKECILECLLSQKKDIQRKLVAHAAQQK 90 (304)
Q Consensus 43 C~LcL~p~~dPV~t~~G~lyckEcIle~ll~qkkei~r~~~~~e~~~~ 90 (304)
|.+|. .....+||.-||-..|+..+.+|.+...+.+..+.
T Consensus 2 C~iC~--------~~~~~~~C~~C~~~~L~~~~~~l~~~~~~~~~l~~ 41 (302)
T PF10186_consen 2 CPICH--------NSRRRFYCANCVNNRLLELRSELQQLKEENEELRR 41 (302)
T ss_pred CCCCC--------CCCCCeECHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666 46688999999999988887777666655554443
No 165
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=62.33 E-value=2.9 Score=39.81 Aligned_cols=51 Identities=20% Similarity=0.520 Sum_probs=40.0
Q ss_pred CceeccCccccccCCcceEEEccCCccchHHHHHHHhhc-----------------------CCCCCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAV-----------------------DKVCLVCNKPCKE 261 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~-----------------------~~~CPvC~~~f~~ 261 (304)
....|.||+--|.+.-. +....|-|.|-..|+.+++.. .-.||||+..+..
T Consensus 114 p~gqCvICLygfa~~~~-ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPA-FTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCCCc-eeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 45689999999988744 457899999999999887531 1379999998863
No 166
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=62.24 E-value=0.65 Score=34.81 Aligned_cols=60 Identities=25% Similarity=0.639 Sum_probs=32.4
Q ss_pred eeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCCCCceEecCCC-cc-ccccCCeeeeee
Q 022029 212 FICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKERNLVNVEKGG-TG-FAAHGDRLEARD 285 (304)
Q Consensus 212 ~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~diI~L~~~g-tg-faa~g~~~eak~ 285 (304)
..||.|...+.-. -|+..|..|-..+ .....||.|+.++. .|+.=| .+ |-.+|+.|.+|+
T Consensus 2 ~~CP~C~~~L~~~--------~~~~~C~~C~~~~-~~~a~CPdC~~~Le-----~LkACGAvdYFC~~c~gLiSKk 63 (70)
T PF07191_consen 2 NTCPKCQQELEWQ--------GGHYHCEACQKDY-KKEAFCPDCGQPLE-----VLKACGAVDYFCNHCHGLISKK 63 (70)
T ss_dssp -B-SSS-SBEEEE--------TTEEEETTT--EE-EEEEE-TTT-SB-E-----EEEETTEEEEE-TTTT-EE-TT
T ss_pred CcCCCCCCccEEe--------CCEEECccccccc-eecccCCCcccHHH-----HHHHhcccceeeccCCceeecc
Confidence 5799998876432 2788888887765 34568999999775 355555 34 445666777665
No 167
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=62.24 E-value=2 Score=38.90 Aligned_cols=57 Identities=19% Similarity=0.364 Sum_probs=31.3
Q ss_pred CceeccCccccccCCcceEEEccCCccc------hHH--HHHHHhhcCCCCCCCCCCCCCCCceEecC
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGHVF------CKK--CADKFMAVDKVCLVCNKPCKERNLVNVEK 269 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGhVf------c~~--Ci~~~~k~~~~CPvC~~~f~~~diI~L~~ 269 (304)
..+.||||...|+... +...=+-+. |.. =+..++-.-..||.|+-.+.++|+-.|.+
T Consensus 4 k~~~CPvC~~~F~~~~---vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~~F~~l~~ 68 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKK---VRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEEDFEKLSP 68 (214)
T ss_pred CceECCCCCCeeeeeE---EEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCcccccccccCCH
Confidence 4689999999997751 111111111 100 00111111258999999998877665543
No 168
>PF14353 CpXC: CpXC protein
Probab=62.11 E-value=11 Score=30.81 Aligned_cols=46 Identities=13% Similarity=0.278 Sum_probs=25.3
Q ss_pred eeccCccccccCCcceEEEccCCccchHHHHHHHhhc---CCCCCCCCCCCCC
Q 022029 212 FICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAV---DKVCLVCNKPCKE 261 (304)
Q Consensus 212 ~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~---~~~CPvC~~~f~~ 261 (304)
+.||.|...|.-..--. +..- .=.+-.++++.. ...||.||..+.-
T Consensus 2 itCP~C~~~~~~~v~~~-I~~~---~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTS-INAD---EDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeE-EcCc---CCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 57999988886642111 1111 112333444432 3589999998864
No 169
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.03 E-value=10 Score=28.68 Aligned_cols=50 Identities=20% Similarity=0.503 Sum_probs=34.4
Q ss_pred eccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCCCCc
Q 022029 213 ICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKERNL 264 (304)
Q Consensus 213 ~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~di 264 (304)
-|--|.+.+-..+.-..|-+=-|.||..|.+..+ ...||.|+-.+....|
T Consensus 7 nCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l--~g~CPnCGGelv~RP~ 56 (84)
T COG3813 7 NCECCDRDLPPDSTDARICTFECTFCADCAENRL--HGLCPNCGGELVARPI 56 (84)
T ss_pred CCcccCCCCCCCCCceeEEEEeeehhHhHHHHhh--cCcCCCCCchhhcCcC
Confidence 4666776665544334444456899999998754 5689999988865444
No 170
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=60.67 E-value=6.6 Score=26.38 Aligned_cols=41 Identities=22% Similarity=0.519 Sum_probs=20.8
Q ss_pred ccCccccccCCcceEEEccCCccchHHHHHHHhhcC--CCCCCC
Q 022029 214 CPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVD--KVCLVC 255 (304)
Q Consensus 214 CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~--~~CPvC 255 (304)
|-+|++..+-....- ...|+-.+-..|++.++... ..||.|
T Consensus 1 C~~C~~iv~~G~~C~-~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCS-NRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-S-S--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCC-CCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 667777766653211 23588788889999998743 379987
No 171
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.31 E-value=11 Score=37.81 Aligned_cols=36 Identities=22% Similarity=0.595 Sum_probs=30.4
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHHHhh
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA 247 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k 247 (304)
...+.|.||...+.+ .++...|||.||..|...++.
T Consensus 68 ~~~~~c~ic~~~~~~---~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG---EIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcc---hhhhcCCCcHHHHHHHHHHhh
Confidence 356899999998877 346779999999999999875
No 172
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=60.24 E-value=4.8 Score=28.14 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=21.6
Q ss_pred ceeccCccccccCCcc-eEEEccCCccchHHHHHHHhhcCCCCCCCCCC
Q 022029 211 SFICPSCKVTLTNTLS-LVALSSCGHVFCKKCADKFMAVDKVCLVCNKP 258 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~-~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~ 258 (304)
+|+|.+|.-++....- -..-.+-|--| .. +-.++.||+|+.+
T Consensus 1 ~y~C~~CgyiYd~~~Gd~~~~i~pGt~f-----~~-Lp~~w~CP~C~a~ 43 (50)
T cd00730 1 KYECRICGYIYDPAEGDPDEGIPPGTPF-----ED-LPDDWVCPVCGAG 43 (50)
T ss_pred CcCCCCCCeEECCCCCCcccCcCCCCCH-----hH-CCCCCCCCCCCCc
Confidence 3678888876654200 00001113332 22 3357899999874
No 173
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=60.13 E-value=7.5 Score=43.02 Aligned_cols=50 Identities=20% Similarity=0.478 Sum_probs=39.5
Q ss_pred ceeccCccccccC---CcceEEEccCCccchHHHHHHHhh-cCCCCCCCCCCCC
Q 022029 211 SFICPSCKVTLTN---TLSLVALSSCGHVFCKKCADKFMA-VDKVCLVCNKPCK 260 (304)
Q Consensus 211 ~~~CPIc~k~~~~---~~~~v~l~~CGhVfc~~Ci~~~~k-~~~~CPvC~~~f~ 260 (304)
.-+|-||.+...- .-.||+-.-||--+|..|++==.+ .+..||.|+..|+
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4599999997533 347899999999999999942122 5679999999998
No 174
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=59.54 E-value=5.1 Score=31.51 Aligned_cols=36 Identities=31% Similarity=0.774 Sum_probs=28.6
Q ss_pred eeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCC
Q 022029 212 FICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCK 260 (304)
Q Consensus 212 ~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~ 260 (304)
-.|-+|...+..+ ||.||..|-.+ ...|..||+.+.
T Consensus 45 ~~C~~CK~~v~q~---------g~~YCq~CAYk----kGiCamCGKki~ 80 (90)
T PF10235_consen 45 SKCKICKTKVHQP---------GAKYCQTCAYK----KGICAMCGKKIL 80 (90)
T ss_pred ccccccccccccC---------CCccChhhhcc----cCcccccCCeec
Confidence 3799998876554 89999999543 568999999874
No 175
>PHA02768 hypothetical protein; Provisional
Probab=59.32 E-value=12 Score=26.71 Aligned_cols=48 Identities=13% Similarity=0.295 Sum_probs=30.9
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCC-CCCceEecCC
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCK-ERNLVNVEKG 270 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~-~~diI~L~~~ 270 (304)
.|.|+.|.+.|+..+.+. +|.-- .. +..+|..|++.|. ...+|.|..+
T Consensus 5 ~y~C~~CGK~Fs~~~~L~-----~H~r~------H~-k~~kc~~C~k~f~~~s~l~~~~~~ 53 (55)
T PHA02768 5 GYECPICGEIYIKRKSMI-----THLRK------HN-TNLKLSNCKRISLRTGEYIEIKAE 53 (55)
T ss_pred ccCcchhCCeeccHHHHH-----HHHHh------cC-CcccCCcccceecccceeEEEecc
Confidence 479999999998764311 11110 01 2458999999986 4677777543
No 176
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=59.22 E-value=7.8 Score=24.72 Aligned_cols=9 Identities=33% Similarity=1.143 Sum_probs=7.2
Q ss_pred CCCCCCCCC
Q 022029 250 KVCLVCNKP 258 (304)
Q Consensus 250 ~~CPvC~~~ 258 (304)
..||+|+.+
T Consensus 19 ~~CP~Cg~~ 27 (34)
T cd00729 19 EKCPICGAP 27 (34)
T ss_pred CcCcCCCCc
Confidence 489999875
No 177
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=58.98 E-value=7 Score=26.72 Aligned_cols=40 Identities=18% Similarity=0.558 Sum_probs=24.0
Q ss_pred ccCccccccCCcceEEEccCCc-----cchHHHHHHHhh--cCCCCCCC
Q 022029 214 CPSCKVTLTNTLSLVALSSCGH-----VFCKKCADKFMA--VDKVCLVC 255 (304)
Q Consensus 214 CPIc~k~~~~~~~~v~l~~CGh-----Vfc~~Ci~~~~k--~~~~CPvC 255 (304)
|-||+..-.... -++.||+. .+-..|+.+|+. ....|++|
T Consensus 1 CrIC~~~~~~~~--~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE--PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS---EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC--ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 567777655543 35678864 456789999986 55678887
No 178
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=58.81 E-value=3 Score=29.20 Aligned_cols=13 Identities=31% Similarity=0.902 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCCC
Q 022029 249 DKVCLVCNKPCKE 261 (304)
Q Consensus 249 ~~~CPvC~~~f~~ 261 (304)
...||+|+.+|+.
T Consensus 20 ~~~CPlC~r~l~~ 32 (54)
T PF04423_consen 20 KGCCPLCGRPLDE 32 (54)
T ss_dssp SEE-TTT--EE-H
T ss_pred CCcCCCCCCCCCH
Confidence 3489999999975
No 179
>cd05533 POLBc_delta DNA polymerase type-B delta subfamily catalytic domain. Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. Presently, no direct data is available regarding the strand specificity of DNA polymerase during DNA replication in vivo. However, mutation analysis supports the hypothesis that DNA polymerase delta is the enzyme responsible for both elongation and maturation of Okazaki fragments on the lagging strand.
Probab=58.68 E-value=20 Score=35.44 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=26.8
Q ss_pred CceecCCCceeehh--------hHHHHHHHhhHHHHHHHHH
Q 022029 52 DPLCCQKGHIYCKE--------CILECLLSQKKDIQRKLVA 84 (304)
Q Consensus 52 dPV~t~~G~lyckE--------cIle~ll~qkkei~r~~~~ 84 (304)
+-+++|.|+.|++. .||+.||.+|+++|++++.
T Consensus 56 ~~~~~p~~~~f~~~~~~~Gilp~iL~~Ll~~R~~~K~~mk~ 96 (393)
T cd05533 56 DYIKTPNGDYFVKSSVRKGLLPEILEELLAARKRAKKDLKE 96 (393)
T ss_pred ceEECCCCceeecCCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence 34578899999865 5889999999999888865
No 180
>PRK11595 DNA utilization protein GntX; Provisional
Probab=57.93 E-value=9.2 Score=34.61 Aligned_cols=39 Identities=21% Similarity=0.620 Sum_probs=25.7
Q ss_pred eccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCC
Q 022029 213 ICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCK 260 (304)
Q Consensus 213 ~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~ 260 (304)
.|.+|...+... +..+|..|...+-.-...|+.|+.++.
T Consensus 7 ~C~~C~~~~~~~---------~~~lC~~C~~~l~~~~~~C~~Cg~~~~ 45 (227)
T PRK11595 7 LCWLCRMPLALS---------HWGICSVCSRALRTLKTCCPQCGLPAT 45 (227)
T ss_pred cCccCCCccCCC---------CCcccHHHHhhCCcccCcCccCCCcCC
Confidence 588888766322 234788888775322357899988754
No 181
>PF15616 TerY-C: TerY-C metal binding domain
Probab=57.29 E-value=6.5 Score=33.05 Aligned_cols=42 Identities=21% Similarity=0.547 Sum_probs=29.4
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCC
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCK 260 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~ 260 (304)
.+.--||-|.-.+ .|++ =.||+++|..- .....||-|+....
T Consensus 75 ~g~PgCP~CGn~~----~fa~-C~CGkl~Ci~g-----~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 75 IGAPGCPHCGNQY----AFAV-CGCGKLFCIDG-----EGEVTCPWCGNEGS 116 (131)
T ss_pred cCCCCCCCCcChh----cEEE-ecCCCEEEeCC-----CCCEECCCCCCeee
Confidence 3457899998654 3344 48999999643 12468999998654
No 182
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=56.38 E-value=6.8 Score=30.45 Aligned_cols=30 Identities=27% Similarity=0.586 Sum_probs=25.0
Q ss_pred CCCcceecccCCCCCce--ecCCCceeehhhH
Q 022029 38 KPFDACCLCLKPFIDPL--CCQKGHIYCKECI 67 (304)
Q Consensus 38 ~~F~~C~LcL~p~~dPV--~t~~G~lyckEcI 67 (304)
-+...|+.|-+++.+.+ +.|+||+|-..|+
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~ 107 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCI 107 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEecccc
Confidence 33477999999998664 7999999998885
No 183
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=56.09 E-value=13 Score=41.21 Aligned_cols=51 Identities=25% Similarity=0.505 Sum_probs=40.5
Q ss_pred CceeccCccccccC---CcceEEEccCCccchHHHHHHHhh-cCCCCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTN---TLSLVALSSCGHVFCKKCADKFMA-VDKVCLVCNKPCK 260 (304)
Q Consensus 210 ~~~~CPIc~k~~~~---~~~~v~l~~CGhVfc~~Ci~~~~k-~~~~CPvC~~~f~ 260 (304)
+.-+|-||.+...- .-.||+-.-||--+|..|++-=.+ .+..||.|+..|+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 56799999997533 347899999999999999943222 5679999999998
No 184
>PF09805 Nop25: Nucleolar protein 12 (25kDa); InterPro: IPR019186 Nop12 is a novel nucleolar protein required for pre-large subunit rRNA processing and in yeast normal rates of cell growth at low temperatures [].
Probab=55.72 E-value=76 Score=26.64 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=35.8
Q ss_pred CceeehhhHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022029 59 GHIYCKECILECLL-SQKKDIQRKLVAHAAQQKQEKEEEEERLMLQKARELDAFD 112 (304)
Q Consensus 59 G~lyckEcIle~ll-~qkkei~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~F~ 112 (304)
-.+|+..+=.+||. =+|...+|+.++-++++++.+++..+.....|++....+.
T Consensus 12 ev~FD~~~R~eyLTGFhKRK~~Rrk~Aqe~~~~k~r~er~eeRk~~R~erk~~~~ 66 (137)
T PF09805_consen 12 EVVFDEKARREYLTGFHKRKKQRRKKAQEQAEEKEREERIEERKEIREERKEELE 66 (137)
T ss_pred eEEcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999998 2333457777777777776665555555555555555444
No 185
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=55.65 E-value=3.6 Score=28.42 Aligned_cols=12 Identities=50% Similarity=0.936 Sum_probs=7.0
Q ss_pred hcCCCCCCCCCC
Q 022029 247 AVDKVCLVCNKP 258 (304)
Q Consensus 247 k~~~~CPvC~~~ 258 (304)
-.++.||+|+..
T Consensus 32 p~~w~CP~C~a~ 43 (47)
T PF00301_consen 32 PDDWVCPVCGAP 43 (47)
T ss_dssp -TT-B-TTTSSB
T ss_pred CCCCcCcCCCCc
Confidence 357899999864
No 186
>PRK05978 hypothetical protein; Provisional
Probab=54.44 E-value=7.6 Score=33.30 Aligned_cols=33 Identities=24% Similarity=0.632 Sum_probs=24.6
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCCC
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKER 262 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~ 262 (304)
.-.||.|.+ |+.| +.+++-...|++|+..|...
T Consensus 33 ~grCP~CG~--------------G~LF-----~g~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 33 RGRCPACGE--------------GKLF-----RAFLKPVDHCAACGEDFTHH 65 (148)
T ss_pred cCcCCCCCC--------------Cccc-----ccccccCCCccccCCccccC
Confidence 358999987 4555 25666677999999999753
No 187
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=53.72 E-value=2.1 Score=25.04 Aligned_cols=8 Identities=38% Similarity=1.111 Sum_probs=3.6
Q ss_pred CCCCCCCC
Q 022029 251 VCLVCNKP 258 (304)
Q Consensus 251 ~CPvC~~~ 258 (304)
.||.||.+
T Consensus 15 fC~~CG~~ 22 (23)
T PF13240_consen 15 FCPNCGTP 22 (23)
T ss_pred chhhhCCc
Confidence 34444443
No 188
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.86 E-value=6 Score=37.69 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=28.7
Q ss_pred cceecccCCCCCceecCCCceeehhhHHHHHHH
Q 022029 41 DACCLCLKPFIDPLCCQKGHIYCKECILECLLS 73 (304)
Q Consensus 41 ~~C~LcL~p~~dPV~t~~G~lyckEcIle~ll~ 73 (304)
+-|.+|++...-||.=+.||.||-+||--..-.
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~n 40 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKN 40 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhc
Confidence 569999999999998889999999999765543
No 189
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=51.89 E-value=7.3 Score=33.00 Aligned_cols=38 Identities=21% Similarity=0.455 Sum_probs=23.0
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHHH-hhcCCCCCCCCCCCCC
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKF-MAVDKVCLVCNKPCKE 261 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~-~k~~~~CPvC~~~f~~ 261 (304)
...|.||.|...|+..- .+... ......||.|+..+..
T Consensus 97 ~~~Y~Cp~C~~~y~~~e---------------a~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 97 NAYYKCPNCQSKYTFLE---------------ANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred CcEEECcCCCCEeeHHH---------------HHHhcCCCCcEECCCCCCEEEE
Confidence 45799999887775421 11100 0122689999998854
No 190
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=51.70 E-value=4.7 Score=37.86 Aligned_cols=53 Identities=19% Similarity=0.461 Sum_probs=32.8
Q ss_pred CCceeccCccccccCC----cceEEE-ccCCccchHHHHHH-Hhh----------cCCCCCCCCCCCCC
Q 022029 209 DKSFICPSCKVTLTNT----LSLVAL-SSCGHVFCKKCADK-FMA----------VDKVCLVCNKPCKE 261 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~----~~~v~l-~~CGhVfc~~Ci~~-~~k----------~~~~CPvC~~~f~~ 261 (304)
..-+.|++|.+++..- .+|..- .+|-+.||.+.+.+ |+. +-..||.|++.|-+
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFAD 227 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFAD 227 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcc
Confidence 3457889998887551 122111 16777777777765 322 13589999998854
No 191
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=51.38 E-value=8 Score=37.31 Aligned_cols=66 Identities=29% Similarity=0.538 Sum_probs=44.9
Q ss_pred cCCCCCceeee-cccCCCcccccCCCCCceeccCccccccCCcceEEEccCCccchHHHHHHHhhc-CCCCCCCC
Q 022029 184 KLKLKSLFPVY-FTEDKSEEKKSSSNDKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAV-DKVCLVCN 256 (304)
Q Consensus 184 ~l~lKDLi~l~-f~~~~~~~~~~~~~~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~-~~~CPvC~ 256 (304)
-++..-|+||. |.+.+.. ...+.-.|-.|......... ..-..|-++||.+| +.|+.. -..||-|.
T Consensus 307 ARSyhhL~PL~~F~Eip~~-----~~~~~~~Cf~C~~~~~~~~~-y~C~~Ck~~FCldC-Dv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 307 ARSYHHLFPLKPFVEIPET-----EYNGSRFCFACQGELLSSGR-YRCESCKNVFCLDC-DVFIHESLHNCPGCE 374 (378)
T ss_pred HHHHHhhcCCcchhhcccc-----ccCCCcceeeeccccCCCCc-EEchhccceeeccc-hHHHHhhhhcCCCcC
Confidence 56778888985 6665432 11234458888776666533 44678999999999 666653 35899997
No 192
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.30 E-value=14 Score=33.95 Aligned_cols=48 Identities=23% Similarity=0.403 Sum_probs=35.2
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHHHhhc--------CCCCCCCCCCCC
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAV--------DKVCLVCNKPCK 260 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~--------~~~CPvC~~~f~ 260 (304)
.--|.+|..++...-. +-..|=|+|-+.|+.++... ...||-|..++=
T Consensus 50 ~pNC~LC~t~La~gdt--~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDT--TRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCceeCCccccCcc--eeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 3468899988866422 23479999999999997531 258999997763
No 193
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=51.12 E-value=16 Score=34.34 Aligned_cols=54 Identities=17% Similarity=0.473 Sum_probs=36.4
Q ss_pred CCCceeccCccccccCCc---------------ceEEEccCCccc-hHHHHHHHhhc---CCCCCCCCCCCCC
Q 022029 208 NDKSFICPSCKVTLTNTL---------------SLVALSSCGHVF-CKKCADKFMAV---DKVCLVCNKPCKE 261 (304)
Q Consensus 208 ~~~~~~CPIc~k~~~~~~---------------~~v~l~~CGhVf-c~~Ci~~~~k~---~~~CPvC~~~f~~ 261 (304)
..+++.|+-|.+.+.+.+ +..-...||-+| ....+.-.+.. ...|++||+.|.+
T Consensus 127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSR 199 (279)
T KOG2462|consen 127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSR 199 (279)
T ss_pred cCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccc
Confidence 467899999999887754 122234577666 34455544442 3589999999985
No 194
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=51.03 E-value=7.5 Score=21.73 Aligned_cols=13 Identities=23% Similarity=0.897 Sum_probs=10.0
Q ss_pred eeccCccccccCC
Q 022029 212 FICPSCKVTLTNT 224 (304)
Q Consensus 212 ~~CPIc~k~~~~~ 224 (304)
|.|++|.+.|...
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 5788888888765
No 195
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=50.72 E-value=9.1 Score=40.99 Aligned_cols=50 Identities=12% Similarity=0.268 Sum_probs=35.5
Q ss_pred CceeccCccccccC---CcceEEEccCCccchHHHHHHHhh------cCCCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTN---TLSLVALSSCGHVFCKKCADKFMA------VDKVCLVCNKPC 259 (304)
Q Consensus 210 ~~~~CPIc~k~~~~---~~~~v~l~~CGhVfc~~Ci~~~~k------~~~~CPvC~~~f 259 (304)
....|++|...|++ ...+.-+..|||.+|..||..|.. ..-.|+.|..-|
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 34678888888888 334455677999999999999853 233566666544
No 196
>COG1773 Rubredoxin [Energy production and conversion]
Probab=50.20 E-value=8.7 Score=27.46 Aligned_cols=50 Identities=16% Similarity=0.372 Sum_probs=27.3
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCCCCceEe
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKERNLVNV 267 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~diI~L 267 (304)
.|.|.+|.-+|....- -..|| +--..+++. +..++.||+|+. .++++..|
T Consensus 3 ~~~C~~CG~vYd~e~G---dp~~g-i~pgT~fed-lPd~w~CP~Cg~--~K~~F~~~ 52 (55)
T COG1773 3 RWRCSVCGYVYDPEKG---DPRCG-IAPGTPFED-LPDDWVCPECGV--GKKDFEMI 52 (55)
T ss_pred ceEecCCceEeccccC---CccCC-CCCCCchhh-CCCccCCCCCCC--CHhHeeec
Confidence 5888888877755310 00111 111122233 346789999997 55555554
No 197
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=49.83 E-value=8.3 Score=21.18 Aligned_cols=13 Identities=31% Similarity=0.907 Sum_probs=7.8
Q ss_pred eeccCccccccCC
Q 022029 212 FICPSCKVTLTNT 224 (304)
Q Consensus 212 ~~CPIc~k~~~~~ 224 (304)
|.|++|...|.+.
T Consensus 1 ~~C~~C~~~~~~~ 13 (24)
T PF13894_consen 1 FQCPICGKSFRSK 13 (24)
T ss_dssp EE-SSTS-EESSH
T ss_pred CCCcCCCCcCCcH
Confidence 5688888777664
No 198
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=49.59 E-value=5.8 Score=37.95 Aligned_cols=22 Identities=27% Similarity=0.673 Sum_probs=10.8
Q ss_pred cchHHHHHHHhhcCCCCCCCCC
Q 022029 236 VFCKKCADKFMAVDKVCLVCNK 257 (304)
Q Consensus 236 Vfc~~Ci~~~~k~~~~CPvC~~ 257 (304)
.+|.-|-.+|--....||.|+.
T Consensus 211 L~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 211 LSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred EEcCCCCCcccccCccCCCCCC
Confidence 3344444444323446666665
No 199
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=49.52 E-value=19 Score=24.69 Aligned_cols=32 Identities=28% Similarity=0.577 Sum_probs=24.9
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHHH
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKF 245 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~ 245 (304)
=|.|..|.+.|.+.. .+. .=|.+||..|..+.
T Consensus 26 Cf~C~~C~~~l~~~~--~~~-~~~~~~C~~c~~~~ 57 (58)
T PF00412_consen 26 CFKCSKCGKPLNDGD--FYE-KDGKPYCKDCYQKR 57 (58)
T ss_dssp TSBETTTTCBTTTSS--EEE-ETTEEEEHHHHHHH
T ss_pred ccccCCCCCccCCCe--eEe-ECCEEECHHHHhhh
Confidence 589999999998875 233 33799999998764
No 200
>PLN02400 cellulose synthase
Probab=49.51 E-value=11 Score=41.66 Aligned_cols=51 Identities=20% Similarity=0.437 Sum_probs=39.8
Q ss_pred CceeccCccccccC---CcceEEEccCCccchHHHHHHHhh-cCCCCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTN---TLSLVALSSCGHVFCKKCADKFMA-VDKVCLVCNKPCK 260 (304)
Q Consensus 210 ~~~~CPIc~k~~~~---~~~~v~l~~CGhVfc~~Ci~~~~k-~~~~CPvC~~~f~ 260 (304)
+.-+|-||.+...- .-.||+--.||--+|..|++==.+ .+..||.|+..|+
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 34599999997533 347899999999999999842122 5679999999998
No 201
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=48.88 E-value=7.8 Score=33.42 Aligned_cols=38 Identities=24% Similarity=0.479 Sum_probs=21.6
Q ss_pred eccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCC
Q 022029 213 ICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCK 260 (304)
Q Consensus 213 ~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~ 260 (304)
.||.|....+.-..-.++.+ |+++= ....||.|+..|.
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~-~~~~~---------~~~~c~~c~~~f~ 39 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAED-GNAIR---------RRRECLACGKRFT 39 (154)
T ss_pred cCCCCCCCCCEeEeccccCC-CCcee---------eeeeccccCCcce
Confidence 58888876655322233444 54431 1246888887775
No 202
>PLN02248 cellulose synthase-like protein
Probab=48.83 E-value=15 Score=40.85 Aligned_cols=36 Identities=25% Similarity=0.643 Sum_probs=30.2
Q ss_pred cCCccchHHHHHHHhhcCCCCCCCCCCCCCCCceEe
Q 022029 232 SCGHVFCKKCADKFMAVDKVCLVCNKPCKERNLVNV 267 (304)
Q Consensus 232 ~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~diI~L 267 (304)
.|++-+|.+|+...++....||-|.++++..|+-..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYKVTDLDDE 184 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCcccccccccccc
Confidence 588999999999998888999999999976554433
No 203
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=47.94 E-value=12 Score=22.13 Aligned_cols=15 Identities=33% Similarity=0.977 Sum_probs=12.1
Q ss_pred CCceeccCccccccC
Q 022029 209 DKSFICPSCKVTLTN 223 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~ 223 (304)
+..|.|++|.+.|.+
T Consensus 12 ~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 12 EKPYKCPYCGKSFSN 26 (26)
T ss_dssp SSSEEESSSSEEESS
T ss_pred CCCCCCCCCcCeeCc
Confidence 456999999998863
No 204
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.52 E-value=17 Score=29.73 Aligned_cols=76 Identities=28% Similarity=0.516 Sum_probs=46.9
Q ss_pred ccCCCCC-------C-cCCCCCceeee-cccCCCcccccCCCCCceeccCccccccCCc----------ceEEEccCCcc
Q 022029 176 TICPEGK-------E-KLKLKSLFPVY-FTEDKSEEKKSSSNDKSFICPSCKVTLTNTL----------SLVALSSCGHV 236 (304)
Q Consensus 176 ~~CP~sg-------~-~l~lKDLi~l~-f~~~~~~~~~~~~~~~~~~CPIc~k~~~~~~----------~~v~l~~CGhV 236 (304)
+.||+-| | -++.--|+||. |.+.+.+. ......|-.|...|.... ....-..|+++
T Consensus 16 ~~CpiCgLtLVss~HLARSyHHLfPl~~f~ev~~~~-----~~~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~ 90 (112)
T TIGR00622 16 VECPICGLTLILSTHLARSYHHLFPLKAFQEIPLEE-----YNGSRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNV 90 (112)
T ss_pred CcCCcCCCEEeccchHHHhhhccCCCcccccccccc-----cCCCCcccCcCCCCCCcccccccccccccceeCCCCCCc
Confidence 4677544 2 44667888886 76653221 112346999999887531 11224579999
Q ss_pred chHHHHHHHhh-cCCCCCCCCC
Q 022029 237 FCKKCADKFMA-VDKVCLVCNK 257 (304)
Q Consensus 237 fc~~Ci~~~~k-~~~~CPvC~~ 257 (304)
||.+| +-++. .-..||-|..
T Consensus 91 FC~dC-D~fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 91 FCVDC-DVFVHESLHCCPGCIH 111 (112)
T ss_pred ccccc-chhhhhhccCCcCCCC
Confidence 99999 55554 2357998863
No 205
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=44.93 E-value=16 Score=39.03 Aligned_cols=44 Identities=23% Similarity=0.571 Sum_probs=34.5
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCC
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLV 254 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPv 254 (304)
...+.|.+|.-.....+- +--.||||.-..|..+|+...-.||.
T Consensus 1026 ~~~~~C~~C~l~V~gss~--~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1026 GFTFQCAICHLAVRGSSN--FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cceeeeeeEeeEeeccch--hhccccccccHHHHHHHHhcCCcCCC
Confidence 456789999888777643 34689999999999999986667774
No 206
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=44.90 E-value=3.8 Score=24.46 Aligned_cols=9 Identities=33% Similarity=0.785 Sum_probs=4.3
Q ss_pred CCCCCCCCC
Q 022029 250 KVCLVCNKP 258 (304)
Q Consensus 250 ~~CPvC~~~ 258 (304)
..||.||.+
T Consensus 17 ~fC~~CG~~ 25 (26)
T PF13248_consen 17 KFCPNCGAK 25 (26)
T ss_pred ccChhhCCC
Confidence 345555543
No 207
>KOG4709 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.84 E-value=1.4e+02 Score=26.93 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=30.7
Q ss_pred ceeehhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022029 60 HIYCKECILECLLS-QKKDIQRKLVAHAAQQKQEKEEEEERLMLQKA 105 (304)
Q Consensus 60 ~lyckEcIle~ll~-qkkei~r~~~~~e~~~~~~~~~~~~~~~~~~~ 105 (304)
..|++|.-.+||-- .|...+|+..+-+++.++.++++.+.....++
T Consensus 29 vsFDeekrkdylTGFHKRKveRrK~Aqeqikeq~ReerielRk~~rq 75 (217)
T KOG4709|consen 29 VSFDEEKRKDYLTGFHKRKVERRKAAQEQIKEQLREERIELRKERRQ 75 (217)
T ss_pred EeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999972 23345677777777766666666555554433
No 208
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.82 E-value=7.7 Score=37.95 Aligned_cols=79 Identities=18% Similarity=0.214 Sum_probs=56.3
Q ss_pred cCCCCCCcCCCCCce-eeecccCCCcccccCCCCCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcC-CCCCC
Q 022029 177 ICPEGKEKLKLKSLF-PVYFTEDKSEEKKSSSNDKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVD-KVCLV 254 (304)
Q Consensus 177 ~CP~sg~~l~lKDLi-~l~f~~~~~~~~~~~~~~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~-~~CPv 254 (304)
.||+.....+ ++- +|-|.... ...+.|.|+++.+.+...-+ +.|-||||-...|..+-..+ -.||.
T Consensus 306 ~CpvC~~~f~--~ia~~LPfah~~---------~S~Lvc~isge~md~~N~P~-lfpnG~Vyg~~~L~s~~~~~~i~dP~ 373 (389)
T KOG0396|consen 306 NCPVCCEAFK--PIAQALPFAHHA---------QSRLVCSISGELMDDDNPPH-LFPNGYVYGTKALESLNEDDGIGDPR 373 (389)
T ss_pred CCCCcccccc--hhhhcCCchhhh---------hhHHHhhccccccCCCCCcc-cccCceeehhHHHHhhcccCCCcCCC
Confidence 6777765433 222 45554432 35789999999887754433 56889999999999976555 78999
Q ss_pred CCCCCCCCCceEe
Q 022029 255 CNKPCKERNLVNV 267 (304)
Q Consensus 255 C~~~f~~~diI~L 267 (304)
.++.|...+.+.+
T Consensus 374 ~~k~f~~~~l~kv 386 (389)
T KOG0396|consen 374 TKKVFRYSELCKV 386 (389)
T ss_pred CCccccHHHHHHH
Confidence 9999987766554
No 209
>PHA02528 43 DNA polymerase; Provisional
Probab=44.64 E-value=41 Score=36.87 Aligned_cols=33 Identities=24% Similarity=0.520 Sum_probs=28.7
Q ss_pred ecCCCceeehh------hHHHHHHHhhHHHHHHHHHHHH
Q 022029 55 CCQKGHIYCKE------CILECLLSQKKDIQRKLVAHAA 87 (304)
Q Consensus 55 ~t~~G~lyckE------cIle~ll~qkkei~r~~~~~e~ 87 (304)
++|.|+.|+|+ .||+.|+.+|+++|+++++.++
T Consensus 442 ~~p~G~~F~k~~~GiLP~iL~~Ll~~R~~~Kk~Mk~~~~ 480 (881)
T PHA02528 442 CSPNGWMYRKDIRGVIPTEIKKVFDQRKIYKKKMLAAER 480 (881)
T ss_pred EcCCCCeEeCCCCeehHHHHHHHHHHHHHHHHHHHhccc
Confidence 68899999998 5899999999999999987653
No 210
>PF04641 Rtf2: Rtf2 RING-finger
Probab=44.51 E-value=25 Score=32.66 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=40.1
Q ss_pred CceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCC---CCCCCCCC-CCCCceEec
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKV---CLVCNKPC-KERNLVNVE 268 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~---CPvC~~~f-~~~diI~L~ 268 (304)
....|+++...|..+ ||.-.-|++|=.+.|-+|+..... =|.-...+ .-+|||.|+
T Consensus 33 ~w~~CaLS~~pL~~P---iV~d~~G~LynKeaile~Ll~~~~~~~~~~~~~hI~~LKDl~~l~ 92 (260)
T PF04641_consen 33 RWTHCALSQQPLEDP---IVSDRLGRLYNKEAILEFLLDKKKNKDLPKTFSHIKSLKDLVELK 92 (260)
T ss_pred CcCcccCcCCccCCC---eeeCCCCeeEcHHHHHHHHHhcCcCCCCccccccccCccceeeEE
Confidence 457899999999997 456788999999999998763321 11111223 457999986
No 211
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=43.95 E-value=3.7 Score=38.66 Aligned_cols=24 Identities=21% Similarity=0.584 Sum_probs=9.8
Q ss_pred ccchHHHHHHHhhcCCCCCCCCCC
Q 022029 235 HVFCKKCADKFMAVDKVCLVCNKP 258 (304)
Q Consensus 235 hVfc~~Ci~~~~k~~~~CPvC~~~ 258 (304)
+.+|.-|-.+|--....||.|+..
T Consensus 197 ~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 197 YLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp EEEETTT--EEE--TTS-TTT---
T ss_pred EEEcCCCCCeeeecCCCCcCCCCC
Confidence 445666655553345578888865
No 212
>PF07648 Kazal_2: Kazal-type serine protease inhibitor domain; InterPro: IPR011497 This domain is usually indicative of serine protease inhibitors that belong to Merops inhibitor families: I1, I2, I17 and I31. However, kazal-like domains are also seen in the extracellular part of agrins, which are not known to be protease inhibitors. Kazal domains often occur in tandem arrays and have a central alpha-helix, a short two-stranded antiparallel beta-sheet and several disulphide bonds [, , ]. The amino terminal segment of this domain binds to the active site of its target proteases, thus inhibiting their function.; PDB: 2KMP_A 1LDT_L 2KMR_A 2KMO_A 2KMQ_A 1AN1_I 4E0S_B 3T5O_A 4A5W_B 1LR7_A ....
Probab=43.72 E-value=20 Score=22.92 Aligned_cols=21 Identities=38% Similarity=0.963 Sum_probs=18.3
Q ss_pred CCceecCCCceeehhhHHHHH
Q 022029 51 IDPLCCQKGHIYCKECILECL 71 (304)
Q Consensus 51 ~dPV~t~~G~lyckEcIle~l 71 (304)
.+|||..+|..|.=+|+|...
T Consensus 6 ~~PVCg~dg~ty~n~C~l~~~ 26 (42)
T PF07648_consen 6 SSPVCGSDGKTYSNECELRCA 26 (42)
T ss_dssp SSTEEETTSEEESSHHHHHHH
T ss_pred CCCEEcCCCCEEhhHHHHHHH
Confidence 349999999999999999854
No 213
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.37 E-value=41 Score=32.06 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=21.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022029 73 SQKKDIQRKLVAHAAQQKQEKEEEEERLMLQKARELDA 110 (304)
Q Consensus 73 ~qkkei~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 110 (304)
.+-++++++.++..+.|++.+++++|.++ |||+++.
T Consensus 57 ~~a~~~~~kq~eL~~rqeEL~Rke~ELdR--REr~~a~ 92 (313)
T KOG3088|consen 57 TQAKDLAKKQAELLKKQEELRRKEQELDR--RERALAR 92 (313)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHhh
Confidence 45567777777776666666655555443 4455555
No 214
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=43.22 E-value=6.4 Score=41.47 Aligned_cols=14 Identities=14% Similarity=0.328 Sum_probs=10.0
Q ss_pred cCCCCCCCCCCCCC
Q 022029 248 VDKVCLVCNKPCKE 261 (304)
Q Consensus 248 ~~~~CPvC~~~f~~ 261 (304)
....||.||.+...
T Consensus 40 ~~~fC~~CG~~~~~ 53 (645)
T PRK14559 40 DEAHCPNCGAETGT 53 (645)
T ss_pred ccccccccCCcccc
Confidence 45678888887754
No 215
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.71 E-value=16 Score=31.85 Aligned_cols=67 Identities=16% Similarity=0.454 Sum_probs=38.7
Q ss_pred CcCCCCCceeeecccCCCcccccCCCCCceeccCccccc-cCCcceEEEccCCccchHHH-----HHHHhh-cCCCCCCC
Q 022029 183 EKLKLKSLFPVYFTEDKSEEKKSSSNDKSFICPSCKVTL-TNTLSLVALSSCGHVFCKKC-----ADKFMA-VDKVCLVC 255 (304)
Q Consensus 183 ~~l~lKDLi~l~f~~~~~~~~~~~~~~~~~~CPIc~k~~-~~~~~~v~l~~CGhVfc~~C-----i~~~~k-~~~~CPvC 255 (304)
...+|.|-+|+++..- ..+.||||.+.. .+...+ --|+|..= -+.+++ ....|.+|
T Consensus 121 sRrsla~slP~hi~~~-----------~g~KCPvC~K~V~sDd~e~------HlvMCLtkPrlsYNdDVL~ddkGECvIC 183 (205)
T KOG0801|consen 121 SRRSLADSLPVHIMDH-----------SGMKCPVCHKVVPSDDAEI------HLVMCLTKPRLSYNDDVLKDDKGECVIC 183 (205)
T ss_pred hhhhhhhccceeeecc-----------CCccCCccccccCCCcceE------EEEEEecccccccccchhcccCCcEEEE
Confidence 3567888888886542 357899999854 333222 11222110 011222 34688888
Q ss_pred CCCCCCCCceE
Q 022029 256 NKPCKERNLVN 266 (304)
Q Consensus 256 ~~~f~~~diI~ 266 (304)
-+.+...|.|-
T Consensus 184 LEdL~~GdtIA 194 (205)
T KOG0801|consen 184 LEDLEAGDTIA 194 (205)
T ss_pred hhhccCCCcee
Confidence 88888777664
No 216
>PRK12496 hypothetical protein; Provisional
Probab=42.46 E-value=17 Score=31.44 Aligned_cols=29 Identities=31% Similarity=0.801 Sum_probs=20.1
Q ss_pred eeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCCC
Q 022029 212 FICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKER 262 (304)
Q Consensus 212 ~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~ 262 (304)
+.|+-|++.|.... ....||+||.++.++
T Consensus 128 ~~C~gC~~~~~~~~----------------------~~~~C~~CG~~~~r~ 156 (164)
T PRK12496 128 KVCKGCKKKYPEDY----------------------PDDVCEICGSPVKRK 156 (164)
T ss_pred EECCCCCccccCCC----------------------CCCcCCCCCChhhhc
Confidence 67998888886531 123688999887654
No 217
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=42.31 E-value=11 Score=40.49 Aligned_cols=34 Identities=29% Similarity=0.552 Sum_probs=24.2
Q ss_pred eeccCccccccCCcceEE-----EccCCccchHHHHHHH
Q 022029 212 FICPSCKVTLTNTLSLVA-----LSSCGHVFCKKCADKF 245 (304)
Q Consensus 212 ~~CPIc~k~~~~~~~~v~-----l~~CGhVfc~~Ci~~~ 245 (304)
-.|..|.+.|...++.+. -+.||.|||..|-...
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnR 499 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKR 499 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCc
Confidence 469999999964322111 4689999999997653
No 218
>PF12773 DZR: Double zinc ribbon
Probab=42.28 E-value=22 Score=23.99 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=8.0
Q ss_pred CCCCCCCCCCCCC
Q 022029 249 DKVCLVCNKPCKE 261 (304)
Q Consensus 249 ~~~CPvC~~~f~~ 261 (304)
...||.|+..+..
T Consensus 29 ~~~C~~Cg~~~~~ 41 (50)
T PF12773_consen 29 KKICPNCGAENPP 41 (50)
T ss_pred CCCCcCCcCCCcC
Confidence 3567777776543
No 219
>KOG1703 consensus Adaptor protein Enigma and related PDZ-LIM proteins [Signal transduction mechanisms; Cytoskeleton]
Probab=42.21 E-value=30 Score=35.00 Aligned_cols=45 Identities=29% Similarity=0.700 Sum_probs=32.8
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCC
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCK 260 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~ 260 (304)
-|.|-.|.+.|.+.. +...-|-.||..|..++.. ..|..|+.++.
T Consensus 389 cf~C~~C~~~~~~~~---~~~~~~~pyce~~~~~~~~--~~~~~~~~p~~ 433 (479)
T KOG1703|consen 389 CFVCADCGKPLKNSS---FFESDGEPYCEDHYKKLFT--TKCDYCKKPVE 433 (479)
T ss_pred ceeeecccCCCCCCc---ccccCCccchhhhHhhhcc--ccchhccchhH
Confidence 588999988888864 3345588899999888642 46777877653
No 220
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=42.09 E-value=11 Score=39.29 Aligned_cols=47 Identities=34% Similarity=0.661 Sum_probs=29.4
Q ss_pred CCceeccCccc-----cc-cCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCC
Q 022029 209 DKSFICPSCKV-----TL-TNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCK 260 (304)
Q Consensus 209 ~~~~~CPIc~k-----~~-~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~ 260 (304)
...|+|.+|.. .| ...+ .--..||+||-..|+.. ..+.||.|-.--+
T Consensus 509 ~~gfiCe~Cq~~~iiyPF~~~~~--~rC~~C~avfH~~C~~r---~s~~CPrC~R~q~ 561 (580)
T KOG1829|consen 509 GKGFICELCQHNDIIYPFETRNT--RRCSTCLAVFHKKCLRR---KSPCCPRCERRQK 561 (580)
T ss_pred cCeeeeeeccCCCcccccccccc--eeHHHHHHHHHHHHHhc---cCCCCCchHHHHH
Confidence 35688999832 12 1110 11237999999999886 3456999976443
No 221
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.27 E-value=15 Score=24.77 Aligned_cols=13 Identities=38% Similarity=1.002 Sum_probs=10.4
Q ss_pred cCCCCCCCCCCCC
Q 022029 248 VDKVCLVCNKPCK 260 (304)
Q Consensus 248 ~~~~CPvC~~~f~ 260 (304)
+...||+|+.+|+
T Consensus 7 p~K~C~~C~rpf~ 19 (42)
T PF10013_consen 7 PSKICPVCGRPFT 19 (42)
T ss_pred CCCcCcccCCcch
Confidence 4568999999886
No 222
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=40.86 E-value=10 Score=27.82 Aligned_cols=28 Identities=21% Similarity=0.476 Sum_probs=19.4
Q ss_pred CCCCCCCCCC-CCCC---CceEecCCCccccc
Q 022029 249 DKVCLVCNKP-CKER---NLVNVEKGGTGFAA 276 (304)
Q Consensus 249 ~~~CPvC~~~-f~~~---diI~L~~~gtgfaa 276 (304)
...||+|+.. |+++ =+|.|+++.+..|-
T Consensus 18 ~e~CP~Cgs~~~te~W~G~~iIidpe~SeIAk 49 (64)
T COG2093 18 TEICPVCGSTDLTEEWFGLLIIIDPEKSEIAK 49 (64)
T ss_pred CccCCCCCCcccchhhccEEEEEcCcHHHHHH
Confidence 3469999987 7652 46667777666664
No 223
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=40.20 E-value=41 Score=27.50 Aligned_cols=55 Identities=13% Similarity=0.268 Sum_probs=31.3
Q ss_pred CCceeccCccccccCCcceEEEccCC-----ccchHHHHHHHhhcCCCCCCCCCCCCCCCceE
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCG-----HVFCKKCADKFMAVDKVCLVCNKPCKERNLVN 266 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CG-----hVfc~~Ci~~~~k~~~~CPvC~~~f~~~diI~ 266 (304)
...+.|||++..-.+. |.++..+ ..|=..++.+++.....=|+.+.+|+.+=||.
T Consensus 38 ee~L~CPITL~iPe~G---VFvkNs~~S~VC~LyD~~Al~~Lv~~~~~HPLSREpit~sMIv~ 97 (113)
T PF06416_consen 38 EEHLTCPITLCIPENG---VFVKNSSGSDVCSLYDKEALSRLVREGAPHPLSREPITPSMIVS 97 (113)
T ss_dssp CHHH-BTTTTC--SCE---EEEECTTTSSEEEEEEHHHHHHHHHCT---TTT-----TTTEE-
T ss_pred HHHcCCCeEEeecCCc---eEEecCCCCccceecCHHHHHHHHHcCCCCCCccCCCChhhEec
Confidence 3457899999887665 4455443 35778999999987777899999999866654
No 224
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=39.84 E-value=1.4e+02 Score=30.08 Aligned_cols=14 Identities=29% Similarity=0.264 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 022029 76 KDIQRKLVAHAAQQ 89 (304)
Q Consensus 76 kei~r~~~~~e~~~ 89 (304)
|+|+.+.++-+++.
T Consensus 348 k~~~~~~~~~~~~~ 361 (429)
T PRK00247 348 KEIAQKRRAAEREI 361 (429)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444433333
No 225
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=39.80 E-value=34 Score=29.38 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=18.5
Q ss_pred cCCccc-----hHHHHHHHhh-cCCCCCCCCCCC
Q 022029 232 SCGHVF-----CKKCADKFMA-VDKVCLVCNKPC 259 (304)
Q Consensus 232 ~CGhVf-----c~~Ci~~~~k-~~~~CPvC~~~f 259 (304)
.+||+| +...++.... .-..||+||..-
T Consensus 9 ~~gH~FEgWF~ss~~fd~Q~~~glv~CP~Cgs~~ 42 (148)
T PF06676_consen 9 ENGHEFEGWFRSSAAFDRQQARGLVSCPVCGSTE 42 (148)
T ss_pred CCCCccceecCCHHHHHHHHHcCCccCCCCCCCe
Confidence 468888 4555555443 346999999754
No 226
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=39.44 E-value=20 Score=28.58 Aligned_cols=72 Identities=17% Similarity=0.390 Sum_probs=47.5
Q ss_pred CCCccCCCCCCcCCCCCceeeecccCCCcccccCCCCCceeccCccccccCCcceEEEccCC-------ccchHHHHHHH
Q 022029 173 SASTICPEGKEKLKLKSLFPVYFTEDKSEEKKSSSNDKSFICPSCKVTLTNTLSLVALSSCG-------HVFCKKCADKF 245 (304)
Q Consensus 173 ~~~~~CP~sg~~l~lKDLi~l~f~~~~~~~~~~~~~~~~~~CPIc~k~~~~~~~~v~l~~CG-------hVfc~~Ci~~~ 245 (304)
|++++| -|=-+-.|+|.|+|.-=. .-|.|=-|.+.|++. .+.+-| -|+|.-|...+
T Consensus 10 D~etRC---~Hyht~~Diialkc~~C~----------kyYaCy~CHdel~~H----pf~p~~~~~~~~~~iiCGvC~~~L 72 (105)
T COG4357 10 DQETRC---LHYHTPLDIIALKCKCCQ----------KYYACYHCHDELEDH----PFEPWGLQEFNPKAIICGVCRKLL 72 (105)
T ss_pred ccccee---eEecCccceEeeeechhh----------hhhhHHHHHhHHhcC----CCccCChhhcCCccEEhhhhhhhh
Confidence 344555 244566799999986532 357888888888775 123333 26777777665
Q ss_pred hh----cCCCCCCCCCCCCC
Q 022029 246 MA----VDKVCLVCNKPCKE 261 (304)
Q Consensus 246 ~k----~~~~CPvC~~~f~~ 261 (304)
.. ....||.|..+|.+
T Consensus 73 T~~EY~~~~~Cp~C~spFNp 92 (105)
T COG4357 73 TRAEYGMCGSCPYCQSPFNP 92 (105)
T ss_pred hHHHHhhcCCCCCcCCCCCc
Confidence 32 24589999999975
No 227
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.16 E-value=3.9 Score=39.73 Aligned_cols=33 Identities=24% Similarity=0.573 Sum_probs=29.8
Q ss_pred CcceecccCCCCCceecCC-CceeehhhHHHHHH
Q 022029 40 FDACCLCLKPFIDPLCCQK-GHIYCKECILECLL 72 (304)
Q Consensus 40 F~~C~LcL~p~~dPV~t~~-G~lyckEcIle~ll 72 (304)
=-.|.+||.-+...+.|+. +|=||.+||+..|-
T Consensus 43 ~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r 76 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECLHRFCFDCIWKALR 76 (381)
T ss_pred hhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 3479999999999999996 99999999999986
No 228
>PRK12495 hypothetical protein; Provisional
Probab=38.69 E-value=1.2e+02 Score=27.73 Aligned_cols=14 Identities=29% Similarity=0.800 Sum_probs=8.6
Q ss_pred CceeccCccccccC
Q 022029 210 KSFICPSCKVTLTN 223 (304)
Q Consensus 210 ~~~~CPIc~k~~~~ 223 (304)
+...||+|.+.+..
T Consensus 57 G~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 57 GQEFCPTCQQPVTE 70 (226)
T ss_pred CeeECCCCCCcccc
Confidence 45667777766554
No 229
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.65 E-value=70 Score=34.59 Aligned_cols=8 Identities=13% Similarity=0.351 Sum_probs=3.1
Q ss_pred CCCCceEe
Q 022029 260 KERNLVNV 267 (304)
Q Consensus 260 ~~~diI~L 267 (304)
...|||.+
T Consensus 713 ~pGDII~V 720 (1118)
T KOG1029|consen 713 EPGDIIIV 720 (1118)
T ss_pred cCCCEEEE
Confidence 33344433
No 230
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=38.05 E-value=29 Score=31.17 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=28.4
Q ss_pred CceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKP 258 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~ 258 (304)
..|+||.++++|.+++ |---+++|..|+. +||.....
T Consensus 86 kIYICPFTGKVF~DNt---------~~nPQDAIYDWvS---kCPeN~ER 122 (238)
T PF10915_consen 86 KIYICPFTGKVFGDNT---------HPNPQDAIYDWVS---KCPENTER 122 (238)
T ss_pred eEEEcCCcCccccCCC---------CCChHHHHHHHHh---hCCccchh
Confidence 4699999999999984 4456889999874 67765443
No 231
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=37.84 E-value=20 Score=25.93 Aligned_cols=14 Identities=43% Similarity=0.783 Sum_probs=11.3
Q ss_pred cCCCCCCCCCCCCC
Q 022029 248 VDKVCLVCNKPCKE 261 (304)
Q Consensus 248 ~~~~CPvC~~~f~~ 261 (304)
+...||+||+++..
T Consensus 2 ~HkHC~~CG~~Ip~ 15 (59)
T PF09889_consen 2 PHKHCPVCGKPIPP 15 (59)
T ss_pred CCCcCCcCCCcCCc
Confidence 35689999999875
No 232
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.58 E-value=26 Score=33.14 Aligned_cols=10 Identities=20% Similarity=0.793 Sum_probs=7.6
Q ss_pred CCCCCCCCCC
Q 022029 250 KVCLVCNKPC 259 (304)
Q Consensus 250 ~~CPvC~~~f 259 (304)
..||+|+..|
T Consensus 270 ~~C~~Cgt~f 279 (279)
T TIGR00627 270 PICKTCKTAF 279 (279)
T ss_pred CCCCCCCCCC
Confidence 4788888765
No 233
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.35 E-value=21 Score=35.28 Aligned_cols=44 Identities=27% Similarity=0.685 Sum_probs=28.9
Q ss_pred ceeccCccccccC--C-cceEEEccCCccchHHHHHHHhhcCCCCCCCC
Q 022029 211 SFICPSCKVTLTN--T-LSLVALSSCGHVFCKKCADKFMAVDKVCLVCN 256 (304)
Q Consensus 211 ~~~CPIc~k~~~~--~-~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~ 256 (304)
...||.|+-.+.- . .+ +.-+ |||-||+.|...|...+..|..|.
T Consensus 306 wr~CpkC~~~ie~~~GCnh-m~Cr-C~~~fcy~C~~~~~~~~~~~~~~~ 352 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNH-MTCR-CGHQFCYMCGGDWKTHNGECYECC 352 (384)
T ss_pred cCcCcccceeeeecCCcce-EEee-ccccchhhcCcchhhCCccccCcc
Confidence 4679999975422 2 23 3345 999999999988765554454443
No 234
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=37.26 E-value=7.5 Score=36.94 Aligned_cols=50 Identities=20% Similarity=0.483 Sum_probs=30.2
Q ss_pred ceeccCccc-cccCCcceEEEccCCccchHHHHHHH-hhc------CCCCCCCCCCCC
Q 022029 211 SFICPSCKV-TLTNTLSLVALSSCGHVFCKKCADKF-MAV------DKVCLVCNKPCK 260 (304)
Q Consensus 211 ~~~CPIc~k-~~~~~~~~v~l~~CGhVfc~~Ci~~~-~k~------~~~CPvC~~~f~ 260 (304)
.-+|.+|.. .|+-..+=---+.||++||..|-... +.+ -..|+.|=..+.
T Consensus 168 a~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el~ 225 (288)
T KOG1729|consen 168 ATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEELE 225 (288)
T ss_pred ceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHHh
Confidence 468999998 66542110114689999999887762 211 125666655553
No 235
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=36.69 E-value=17 Score=20.67 Aligned_cols=13 Identities=23% Similarity=0.812 Sum_probs=10.5
Q ss_pred eeccCccccccCC
Q 022029 212 FICPSCKVTLTNT 224 (304)
Q Consensus 212 ~~CPIc~k~~~~~ 224 (304)
|.|.||...|++.
T Consensus 1 ~~C~~C~~~f~s~ 13 (25)
T PF12874_consen 1 FYCDICNKSFSSE 13 (25)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCCcCCH
Confidence 5788998888775
No 236
>PF13025 DUF3886: Protein of unknown function (DUF3886)
Probab=35.73 E-value=1.7e+02 Score=21.89 Aligned_cols=43 Identities=19% Similarity=0.337 Sum_probs=18.1
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022029 66 CILECLLSQKKDIQRKLVAHAAQQKQEKEEEEERLMLQKARELDAFDQ 113 (304)
Q Consensus 66 cIle~ll~qkkei~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~F~~ 113 (304)
.++.-|+.++++ +++-|...+++++++......++++ -..|+.
T Consensus 17 d~~~kLka~k~e----Lk~~ee~r~e~e~~~~~~erk~rEK-nksFeE 59 (70)
T PF13025_consen 17 DVLAKLKAKKQE----LKAEEEKRKEEERARRREERKEREK-NKSFEE 59 (70)
T ss_pred HHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHh-hcCHHH
Confidence 344455555544 4443443333333333333333333 455653
No 237
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=35.53 E-value=22 Score=34.69 Aligned_cols=25 Identities=24% Similarity=0.708 Sum_probs=17.3
Q ss_pred CceeccCccccccCCcceEEEccCCccchHHH
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGHVFCKKC 241 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~C 241 (304)
-.-+||||.+..++- +. |-.-|.+|
T Consensus 14 l~ElCPVCGDkVSGY-HY------GLLTCESC 38 (475)
T KOG4218|consen 14 LGELCPVCGDKVSGY-HY------GLLTCESC 38 (475)
T ss_pred cccccccccCccccc-ee------eeeehhhh
Confidence 456999999998875 32 33456666
No 238
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=35.15 E-value=24 Score=26.03 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=16.9
Q ss_pred cCCCCCCCCCCCCC---CCc-eEecCCCcccc
Q 022029 248 VDKVCLVCNKPCKE---RNL-VNVEKGGTGFA 275 (304)
Q Consensus 248 ~~~~CPvC~~~f~~---~di-I~L~~~gtgfa 275 (304)
....||+|+..-.- +.+ |.++|+.+.-|
T Consensus 16 ~~~~Cp~Cgs~~~S~~w~G~v~i~dPe~S~vA 47 (64)
T PRK06393 16 PEKTCPVHGDEKTTTEWFGFLIITEPEGSAIA 47 (64)
T ss_pred CCCcCCCCCCCcCCcCcceEEEEECCchhHHH
Confidence 45589999976532 234 44566655444
No 239
>PF13025 DUF3886: Protein of unknown function (DUF3886)
Probab=34.97 E-value=1.5e+02 Score=22.23 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022029 77 DIQRKLVAHAAQQKQEKEEEEERLMLQ 103 (304)
Q Consensus 77 ei~r~~~~~e~~~~~~~~~~~~~~~~~ 103 (304)
++..++++-.++.+++.+++.+...++
T Consensus 17 d~~~kLka~k~eLk~~ee~r~e~e~~~ 43 (70)
T PF13025_consen 17 DVLAKLKAKKQELKAEEEKRKEEERAR 43 (70)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344555555555544433333333333
No 240
>smart00280 KAZAL Kazal type serine protease inhibitors. Kazal type serine protease inhibitors and follistatin-like domains.
Probab=34.67 E-value=27 Score=23.22 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=19.1
Q ss_pred CCCceecCCCceeehhhHHHHH
Q 022029 50 FIDPLCCQKGHIYCKECILECL 71 (304)
Q Consensus 50 ~~dPV~t~~G~lyckEcIle~l 71 (304)
..+|||..+|.-|.=+|.|...
T Consensus 9 ~~~pVCgsdg~TY~N~C~l~~~ 30 (46)
T smart00280 9 EYDPVCGSDGVTYSNECHLCKA 30 (46)
T ss_pred CCCccCCCCCCEeCCHhHHHHH
Confidence 3589999999999999999754
No 241
>cd05536 POLBc_B3 DNA polymerase type-B B3 subfamily catalytic domain. Archaeal proteins that are involved in DNA replication are similar to those from eukaryotes. Some members of the archaea also possess multiple family B DNA polymerases (B1, B2 and B3). So far there is no specific function(s) has been assigned for different members of the archaea type B DNA polymerases. Phylogenetic analyses of eubacterial, archaeal, and eukaryotic family B DNA polymerases are support independent gene duplications during the evolution of archaeal and eukaryotic family B DNA polymerases. Structural comparison of the thermostable DNA polymerase type B to its mesostable homolog suggests several adaptations to high temperature such as shorter loops, disulfide bridges, and increasing electrostatic interaction at subdomain interfaces.
Probab=34.61 E-value=80 Score=30.85 Aligned_cols=32 Identities=31% Similarity=0.485 Sum_probs=26.0
Q ss_pred eecCCCceeehh------hHHHHHHHhhHHHHHHHHHH
Q 022029 54 LCCQKGHIYCKE------CILECLLSQKKDIQRKLVAH 85 (304)
Q Consensus 54 V~t~~G~lyckE------cIle~ll~qkkei~r~~~~~ 85 (304)
+..+.||-|+++ .||+.||.+|+++|++++..
T Consensus 53 ~~~~~~~~f~~~~~Gilp~il~~ll~~R~~~K~~mk~~ 90 (371)
T cd05536 53 VEPQVGHKFRKDPPGFIPSVLEDLLEERRRIKEKMKKL 90 (371)
T ss_pred cCCCCCcEEecCCCCchHHHHHHHHHHHHHHHHHHhhC
Confidence 344479999985 59999999999999998764
No 242
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.56 E-value=11 Score=26.21 Aligned_cols=13 Identities=46% Similarity=1.117 Sum_probs=9.1
Q ss_pred cCCCCCCCCCCCC
Q 022029 248 VDKVCLVCNKPCK 260 (304)
Q Consensus 248 ~~~~CPvC~~~f~ 260 (304)
++..||+|+.||.
T Consensus 11 p~KICpvCqRPFs 23 (54)
T COG4338 11 PDKICPVCQRPFS 23 (54)
T ss_pred chhhhhhhcCchH
Confidence 3457888888775
No 243
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=34.41 E-value=18 Score=34.75 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=7.1
Q ss_pred ceeccCcccccc
Q 022029 211 SFICPSCKVTLT 222 (304)
Q Consensus 211 ~~~CPIc~k~~~ 222 (304)
..+|+.|...+.
T Consensus 212 yL~CslC~teW~ 223 (309)
T PRK03564 212 YLHCNLCESEWH 223 (309)
T ss_pred EEEcCCCCCccc
Confidence 456666666553
No 244
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=34.08 E-value=84 Score=32.29 Aligned_cols=32 Identities=25% Similarity=0.632 Sum_probs=22.2
Q ss_pred eeccCccccccCCcceEEEccCCccchHHHHH
Q 022029 212 FICPSCKVTLTNTLSLVALSSCGHVFCKKCAD 243 (304)
Q Consensus 212 ~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~ 243 (304)
-.|-.|.-.|+.--+---.+.||-|||..|--
T Consensus 902 ~~cmacq~pf~afrrrhhcrncggifcg~cs~ 933 (990)
T KOG1819|consen 902 EQCMACQMPFNAFRRRHHCRNCGGIFCGKCSC 933 (990)
T ss_pred hhhhhccCcHHHHHHhhhhcccCceeeccccc
Confidence 46888888876532222357999999998843
No 245
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=34.04 E-value=12 Score=31.44 Aligned_cols=19 Identities=42% Similarity=0.978 Sum_probs=12.1
Q ss_pred eeccCccccccCCcceEEEccCCccch
Q 022029 212 FICPSCKVTLTNTLSLVALSSCGHVFC 238 (304)
Q Consensus 212 ~~CPIc~k~~~~~~~~v~l~~CGhVfc 238 (304)
.+||.|+-++ .+.-|-|||
T Consensus 29 ~hCp~Cg~PL--------F~KdG~v~C 47 (131)
T COG1645 29 KHCPKCGTPL--------FRKDGEVFC 47 (131)
T ss_pred hhCcccCCcc--------eeeCCeEEC
Confidence 5788888754 234566664
No 246
>PRK06386 replication factor A; Reviewed
Probab=33.41 E-value=30 Score=33.91 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=17.0
Q ss_pred CCCCCCCCCCCCCCceE--ecCCCccc
Q 022029 250 KVCLVCNKPCKERNLVN--VEKGGTGF 274 (304)
Q Consensus 250 ~~CPvC~~~f~~~diI~--L~~~gtgf 274 (304)
+.||.|++.=...|+.. +-+.|||+
T Consensus 249 g~C~~HG~v~~~~dlr~k~vLDDGtg~ 275 (358)
T PRK06386 249 GVCKDHPDAPVYLDIFGYFTISDGTGF 275 (358)
T ss_pred CcCCCCCCCCCeeEEEEEEEEECCCCe
Confidence 47999997555556655 45777775
No 247
>PRK04023 DNA polymerase II large subunit; Validated
Probab=32.95 E-value=27 Score=38.56 Aligned_cols=54 Identities=19% Similarity=0.392 Sum_probs=37.6
Q ss_pred CCceeccCccccccCCcceEEEccCCc-----cchHHHHHHHhhcCCCCCCCCCCCCCCCceEec
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGH-----VFCKKCADKFMAVDKVCLVCNKPCKERNLVNVE 268 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGh-----Vfc~~Ci~~~~k~~~~CPvC~~~f~~~diI~L~ 268 (304)
.+...||-|.....- ..-..||. .||.+|-... ....||.|+.......-+.|+
T Consensus 624 Vg~RfCpsCG~~t~~----frCP~CG~~Te~i~fCP~CG~~~--~~y~CPKCG~El~~~s~~~i~ 682 (1121)
T PRK04023 624 IGRRKCPSCGKETFY----RRCPFCGTHTEPVYRCPRCGIEV--EEDECEKCGREPTPYSKRKID 682 (1121)
T ss_pred ccCccCCCCCCcCCc----ccCCCCCCCCCcceeCccccCcC--CCCcCCCCCCCCCccceEEec
Confidence 356789999987422 13456885 5999994442 335799999999876666665
No 248
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=32.73 E-value=35 Score=30.12 Aligned_cols=35 Identities=26% Similarity=0.678 Sum_probs=24.1
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCCC
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKER 262 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~ 262 (304)
...|+||.|.-.++- ++.+.....||.||..+...
T Consensus 111 ~~~y~C~~~~~r~sf-------------------deA~~~~F~Cp~Cg~~L~~~ 145 (176)
T COG1675 111 NNYYVCPNCHVKYSF-------------------DEAMELGFTCPKCGEDLEEY 145 (176)
T ss_pred CCceeCCCCCCcccH-------------------HHHHHhCCCCCCCCchhhhc
Confidence 457899888776543 33344457999999987643
No 249
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.36 E-value=25 Score=36.20 Aligned_cols=34 Identities=24% Similarity=0.558 Sum_probs=29.7
Q ss_pred CcceecccCCCCC-----ceecCCCceeehhhHHHHHHH
Q 022029 40 FDACCLCLKPFID-----PLCCQKGHIYCKECILECLLS 73 (304)
Q Consensus 40 F~~C~LcL~p~~d-----PV~t~~G~lyckEcIle~ll~ 73 (304)
-+.|.+|+..... |-.=+.||+|+-+|+.+|+-.
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er 329 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER 329 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHH
Confidence 5899999999988 566778999999999999853
No 250
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.19 E-value=20 Score=32.33 Aligned_cols=39 Identities=28% Similarity=0.803 Sum_probs=28.0
Q ss_pred ccCccccccCCcceEEEccCCcc-chHHHHHHHhhcCCCCCCCCCCCC
Q 022029 214 CPSCKVTLTNTLSLVALSSCGHV-FCKKCADKFMAVDKVCLVCNKPCK 260 (304)
Q Consensus 214 CPIc~k~~~~~~~~v~l~~CGhV-fc~~Ci~~~~k~~~~CPvC~~~f~ 260 (304)
|-.|.+.= .-|++.||-|+ +|..|-.. -..||+|..+..
T Consensus 161 Cr~C~~~~----~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGERE----ATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcCC----ceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 87777642 33789999875 68888553 246999998654
No 251
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=32.04 E-value=27 Score=35.35 Aligned_cols=55 Identities=9% Similarity=0.107 Sum_probs=30.4
Q ss_pred CCCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCCCCceEecC
Q 022029 208 NDKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKERNLVNVEK 269 (304)
Q Consensus 208 ~~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~diI~L~~ 269 (304)
....|.|.+|.-.+.... =.+-..+--...+.. +-.++.||+|+.+ +++++.+..
T Consensus 422 ~~~~~~c~~c~~~yd~~~----g~~~~~~~~gt~~~~-lp~~~~cp~c~~~--k~~f~~~~~ 476 (479)
T PRK05452 422 LGPRMQCSVCQWIYDPAK----GEPMQDVAPGTPWSE-VPDNFLCPECSLG--KDVFDELAS 476 (479)
T ss_pred CCCeEEECCCCeEECCCC----CCcccCCCCCCChhh-CCCCCcCcCCCCc--HHHhEeccc
Confidence 356899999997775531 001111111112233 3457899999985 335555543
No 252
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.92 E-value=37 Score=32.11 Aligned_cols=34 Identities=35% Similarity=0.575 Sum_probs=29.3
Q ss_pred CcceecccCCCCCce-ecCCCceeehhhHHHHHHH
Q 022029 40 FDACCLCLKPFIDPL-CCQKGHIYCKECILECLLS 73 (304)
Q Consensus 40 F~~C~LcL~p~~dPV-~t~~G~lyckEcIle~ll~ 73 (304)
=--|.+|-.+=..|. +-+.||+||-=||..+++.
T Consensus 239 ~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~ 273 (298)
T KOG2879|consen 239 DTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLW 273 (298)
T ss_pred CceeeccCCCCCCCeeeccccceeehhhhhhhhcc
Confidence 356999999999896 5668999999999999874
No 253
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=31.83 E-value=34 Score=37.59 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=47.6
Q ss_pred CCceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCCCCceE
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKERNLVN 266 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~~diI~ 266 (304)
-..|.=|+.....+++ |++.+.|+++++..|..++..+...|.|+.+++.+++++
T Consensus 868 pdef~DPlm~Tlm~dP---V~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~d~v~p 922 (943)
T KOG2042|consen 868 PDEFLDPLMSTLMSDP---VVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTEDMVSP 922 (943)
T ss_pred chhhhCccccccCCCC---ccCCcccccccHHHHHHHHhcCCCCccccccCchhhcCC
Confidence 4578999999999999 456669999999999999888889999999999877654
No 254
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=31.61 E-value=2.4e+02 Score=22.82 Aligned_cols=52 Identities=12% Similarity=0.075 Sum_probs=32.5
Q ss_pred CCCcceecccCCCCCceecCC-Cceeeh-hhHHHHHHHhhHHHHHHHHHHHHHHH
Q 022029 38 KPFDACCLCLKPFIDPLCCQK-GHIYCK-ECILECLLSQKKDIQRKLVAHAAQQK 90 (304)
Q Consensus 38 ~~F~~C~LcL~p~~dPV~t~~-G~lyck-EcIle~ll~qkkei~r~~~~~e~~~~ 90 (304)
..+-.|.|.-..+..+ +.|. ..||.- .-+++|||+.+.-+.......+...+
T Consensus 37 ~~vtf~~l~~e~~~~~-~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~ 90 (118)
T PF13815_consen 37 ENVTFCDLENEDCQHF-VDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQ 90 (118)
T ss_pred HhcceeccChhhccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777776666552 2222 455543 24789999988877777666665554
No 255
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=31.53 E-value=29 Score=26.98 Aligned_cols=38 Identities=39% Similarity=0.639 Sum_probs=26.6
Q ss_pred CCCcc-eecccCCCCC-cee-cCCCceeehhhHHHHHHHhh
Q 022029 38 KPFDA-CCLCLKPFID-PLC-CQKGHIYCKECILECLLSQK 75 (304)
Q Consensus 38 ~~F~~-C~LcL~p~~d-PV~-t~~G~lyckEcIle~ll~qk 75 (304)
.+||. |--|..|-.+ |++ ..-||.|-.-||+++|-+|.
T Consensus 29 ~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~ 69 (85)
T PF12861_consen 29 MPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQS 69 (85)
T ss_pred cccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHcccc
Confidence 34543 3446666654 654 44699999999999998763
No 256
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=31.43 E-value=27 Score=20.53 Aligned_cols=13 Identities=23% Similarity=0.792 Sum_probs=9.7
Q ss_pred eeccCccccccCC
Q 022029 212 FICPSCKVTLTNT 224 (304)
Q Consensus 212 ~~CPIc~k~~~~~ 224 (304)
|.|.+|.+.|++.
T Consensus 2 ~~C~~C~k~f~~~ 14 (27)
T PF12171_consen 2 FYCDACDKYFSSE 14 (27)
T ss_dssp CBBTTTTBBBSSH
T ss_pred CCcccCCCCcCCH
Confidence 5688888887774
No 257
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=31.40 E-value=24 Score=25.07 Aligned_cols=15 Identities=13% Similarity=0.275 Sum_probs=7.7
Q ss_pred ecCCCceeehhhHHH
Q 022029 55 CCQKGHIYCKECILE 69 (304)
Q Consensus 55 ~t~~G~lyckEcIle 69 (304)
.|.|||||+..-|+.
T Consensus 2 ~t~DGyvFdp~dI~~ 16 (53)
T PF04270_consen 2 TTSDGYVFDPADIIS 16 (53)
T ss_dssp B-TTS-B--GGG--E
T ss_pred cCCCCceeCHHHccc
Confidence 578999999999986
No 258
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=31.32 E-value=2e+02 Score=26.29 Aligned_cols=48 Identities=21% Similarity=0.226 Sum_probs=33.2
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 022029 66 CILECLLSQKKDIQRKLVAHAAQQKQEKEEE-EERLMLQKARELDAFDQ 113 (304)
Q Consensus 66 cIle~ll~qkkei~r~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~F~~ 113 (304)
.||+-|.++..|++..++.-..|++.+..-+ -++.-+.|.+.|+++..
T Consensus 47 ~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk 95 (272)
T KOG4552|consen 47 NILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQK 95 (272)
T ss_pred HHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 6888888988999999888777776554433 33344446677776654
No 259
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=30.53 E-value=41 Score=22.18 Aligned_cols=7 Identities=43% Similarity=1.298 Sum_probs=3.2
Q ss_pred eccCccc
Q 022029 213 ICPSCKV 219 (304)
Q Consensus 213 ~CPIc~k 219 (304)
.||.|..
T Consensus 2 ~Cp~Cg~ 8 (43)
T PF08271_consen 2 KCPNCGS 8 (43)
T ss_dssp SBTTTSS
T ss_pred CCcCCcC
Confidence 3444443
No 260
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=30.42 E-value=22 Score=32.91 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=27.5
Q ss_pred cceecccCCCCCcee-cCCCceeehhhHHHHHH
Q 022029 41 DACCLCLKPFIDPLC-CQKGHIYCKECILECLL 72 (304)
Q Consensus 41 ~~C~LcL~p~~dPV~-t~~G~lyckEcIle~ll 72 (304)
.-|-|+|+|-..|+. +..-|.|++..|..+|-
T Consensus 190 nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq 222 (275)
T COG5627 190 NRCPITLNPDFYPILSSKCNHKPEMDLINKKLQ 222 (275)
T ss_pred ccCCcccCcchhHHHHhhhcccccHHHHHHHhc
Confidence 359999999999995 55699999999998874
No 261
>PF00050 Kazal_1: Kazal-type serine protease inhibitor domain; InterPro: IPR002350 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of Kazal inhibitors, belongs to MEROPS inhibitor family I1, clan IA. They inhibit serine peptidases of the S1 family (IPR001254 from INTERPRO) []. The members are primarily metazoan, but includes exceptions in the alveolata (apicomplexa), stramenopiles, higher plants and bacteria. Kazal inhibitors, which inhibit a number of serine proteases (such as trypsin and elastase), belong to family of proteins that includes pancreatic secretory trypsin inhibitor; avian ovomucoid; acrosin inhibitor; and elastase inhibitor. These proteins contain between 1 and 7 Kazal-type inhibitor repeats [, ]. The structure of the Kazal repeat includes a large quantity of extended chain, 2 short alpha-helices and a 3-stranded anti-parallel beta sheet [].The inhibitor makes 11 contacts with its enzyme substrate: unusually, 8 of these important residues are hypervariable []. Altering the enzyme-contact residues, and especially that of the active site bond, affects the the strength of inhibition and specificity of the inhibitor for particular serine proteases [, ]. The presence of this Pfam domain is usually indicative of serine protease inhibitors, however, Kazal-like domains are also seen in the extracellular part of agrins which are not known to be proteinase inhibitors.; GO: 0005515 protein binding; PDB: 1HPT_A 1CGI_I 1CGJ_I 2P6A_D 3HH2_C 2B0U_D 2BUS_A 1BUS_A 1OVO_A 3OVO_A ....
Probab=30.13 E-value=33 Score=23.29 Aligned_cols=20 Identities=40% Similarity=0.798 Sum_probs=17.6
Q ss_pred CCCCceecCCCceeehhhHH
Q 022029 49 PFIDPLCCQKGHIYCKECIL 68 (304)
Q Consensus 49 p~~dPV~t~~G~lyckEcIl 68 (304)
.-.+|||-.+|.-|.-+|.|
T Consensus 10 ~~~~PVCGsdg~TY~N~C~l 29 (48)
T PF00050_consen 10 REYDPVCGSDGVTYSNECEL 29 (48)
T ss_dssp SSCS-EEETTSEEESSHHHH
T ss_pred CCCCceECCCCCCccccchh
Confidence 56799999999999999999
No 262
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=30.09 E-value=31 Score=31.73 Aligned_cols=11 Identities=45% Similarity=1.132 Sum_probs=6.1
Q ss_pred eeccCcccccc
Q 022029 212 FICPSCKVTLT 222 (304)
Q Consensus 212 ~~CPIc~k~~~ 222 (304)
|.||+|...+.
T Consensus 3 ~~CP~C~~~l~ 13 (272)
T PRK11088 3 YQCPLCHQPLT 13 (272)
T ss_pred ccCCCCCcchh
Confidence 45555555553
No 263
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=29.69 E-value=52 Score=22.52 Aligned_cols=32 Identities=16% Similarity=0.523 Sum_probs=24.1
Q ss_pred eccCccccccCCcceEEEccCCccchHHHHHHHhhcC
Q 022029 213 ICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVD 249 (304)
Q Consensus 213 ~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~ 249 (304)
.|-||.+.-.+. +.-.|..+|.+|-++++..+
T Consensus 1 ~CiiC~~~~~~G-----I~I~~~fIC~~CE~~iv~~~ 32 (46)
T PF10764_consen 1 KCIICGKEKEEG-----IHIYGKFICSDCEKEIVNTE 32 (46)
T ss_pred CeEeCCCcCCCC-----EEEECeEehHHHHHHhccCC
Confidence 377888887775 33449999999999987543
No 264
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.45 E-value=1.1e+02 Score=30.62 Aligned_cols=17 Identities=35% Similarity=0.901 Sum_probs=12.4
Q ss_pred EccCCccchHHHHHHHh
Q 022029 230 LSSCGHVFCKKCADKFM 246 (304)
Q Consensus 230 l~~CGhVfc~~Ci~~~~ 246 (304)
-..|||.||+-|-..+-
T Consensus 389 C~~c~~~fc~~c~~~l~ 405 (445)
T KOG1814|consen 389 CTKCGTYFCWICAELLY 405 (445)
T ss_pred eccccccceeehhhhcC
Confidence 45788888888866543
No 265
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=29.31 E-value=47 Score=32.19 Aligned_cols=52 Identities=19% Similarity=0.363 Sum_probs=31.9
Q ss_pred CceeccCccccccC---CcceEE-EccCCccchHHHHHHHhh-------cCCCCCCCCCCCCC
Q 022029 210 KSFICPSCKVTLTN---TLSLVA-LSSCGHVFCKKCADKFMA-------VDKVCLVCNKPCKE 261 (304)
Q Consensus 210 ~~~~CPIc~k~~~~---~~~~v~-l~~CGhVfc~~Ci~~~~k-------~~~~CPvC~~~f~~ 261 (304)
.+..|-+|..+-+. .+.+.+ +..--|+.-.+|+.++-+ ..|.||+|+++-..
T Consensus 234 srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss 296 (415)
T COG5533 234 SRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESS 296 (415)
T ss_pred hhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccc
Confidence 46789888865332 111111 112334458899999853 35899999987643
No 266
>PF14353 CpXC: CpXC protein
Probab=29.24 E-value=48 Score=26.99 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=32.5
Q ss_pred ccCCCCCCcCCC--CCceeeecccCCCcccccCCCCCceeccCccccccCCcceEEEccC
Q 022029 176 TICPEGKEKLKL--KSLFPVYFTEDKSEEKKSSSNDKSFICPSCKVTLTNTLSLVALSSC 233 (304)
Q Consensus 176 ~~CP~sg~~l~l--KDLi~l~f~~~~~~~~~~~~~~~~~~CPIc~k~~~~~~~~v~l~~C 233 (304)
.+||.-||+-.. -++|.+...+.. -..-..+.-..+.||-|+..+.-...++|..+=
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l-~e~il~g~l~~~~CP~Cg~~~~~~~p~lY~D~~ 60 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPEL-KEKILDGSLFSFTCPSCGHKFRLEYPLLYHDPE 60 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHH-HHHHHcCCcCEEECCCCCCceecCCCEEEEcCC
Confidence 579988875543 222222222110 011122334578999999999877777877663
No 267
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=29.09 E-value=31 Score=25.14 Aligned_cols=28 Identities=14% Similarity=0.369 Sum_probs=17.8
Q ss_pred cCCCCCCCCCCC-CC---CCceEecCCCcccc
Q 022029 248 VDKVCLVCNKPC-KE---RNLVNVEKGGTGFA 275 (304)
Q Consensus 248 ~~~~CPvC~~~f-~~---~diI~L~~~gtgfa 275 (304)
....||+|+..- +. .-||.|+|+.+..|
T Consensus 14 ~~~~CP~Cgs~~~T~~W~G~viI~dPe~S~IA 45 (61)
T PRK08351 14 TEDRCPVCGSRDLSDEWFDLVIIIDVENSRIA 45 (61)
T ss_pred CCCcCCCCcCCccccccccEEEEeCCcHhHHH
Confidence 344799999644 43 23566677766555
No 268
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=28.69 E-value=20 Score=21.46 Aligned_cols=10 Identities=30% Similarity=0.703 Sum_probs=6.4
Q ss_pred CCCCCCCCCC
Q 022029 251 VCLVCNKPCK 260 (304)
Q Consensus 251 ~CPvC~~~f~ 260 (304)
.||+|++.+.
T Consensus 3 ~CPiC~~~v~ 12 (26)
T smart00734 3 QCPVCFREVP 12 (26)
T ss_pred cCCCCcCccc
Confidence 4777776663
No 269
>cd01327 KAZAL_PSTI Kazal-type pancreatic secretory trypsin inhibitors (PSTI) and related proteins, including the second domain of the ovomucoid turkey inhibitor and the C-terminal domain of the esophagus cancer-related gene-2 protein (ECRG-2), are members of the superfamily of kazal-type proteinase inhibitors and follistatin-like proteins.
Probab=28.53 E-value=39 Score=22.72 Aligned_cols=19 Identities=42% Similarity=0.964 Sum_probs=17.2
Q ss_pred CCceecCCCceeehhhHHH
Q 022029 51 IDPLCCQKGHIYCKECILE 69 (304)
Q Consensus 51 ~dPV~t~~G~lyckEcIle 69 (304)
-+|||-.+|.-|.-+|.|.
T Consensus 9 ~~PVCGsDg~TY~N~C~l~ 27 (45)
T cd01327 9 YDPVCGTDGVTYSNECLLC 27 (45)
T ss_pred CCceeCCCCCEeCCHhHHH
Confidence 4799999999999999984
No 270
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.07 E-value=47 Score=29.55 Aligned_cols=74 Identities=18% Similarity=0.314 Sum_probs=43.9
Q ss_pred CCCcCCCCCceeeecccCCCcccccCCCCCceeccCcccc-----ccCCcceEEEccCCccchHHHHHHHhhc-------
Q 022029 181 GKEKLKLKSLFPVYFTEDKSEEKKSSSNDKSFICPSCKVT-----LTNTLSLVALSSCGHVFCKKCADKFMAV------- 248 (304)
Q Consensus 181 sg~~l~lKDLi~l~f~~~~~~~~~~~~~~~~~~CPIc~k~-----~~~~~~~v~l~~CGhVfc~~Ci~~~~k~------- 248 (304)
+..--.+||.++..|-...- +...+.-.-|-||.-. ..+. ..-...||.-|-+-|+.+|++.
T Consensus 139 ~~~led~kd~lE~df~a~a~----Lekdd~~~~cgicyayqldGTipDq--tCdN~qCgkpFHqiCL~dWLRgilTsRQS 212 (234)
T KOG3268|consen 139 GLQLEDDKDQLECDFCAAAF----LEKDDELGACGICYAYQLDGTIPDQ--TCDNIQCGKPFHQICLTDWLRGILTSRQS 212 (234)
T ss_pred ccccccccceeeeCccHHHh----cCcchhhhcccceeeeecCCccccc--cccccccCCcHHHHHHHHHHHHHhhccce
Confidence 33445567777776643210 0011233457676532 2222 1234579999999999999752
Q ss_pred ----CCCCCCCCCCCC
Q 022029 249 ----DKVCLVCNKPCK 260 (304)
Q Consensus 249 ----~~~CPvC~~~f~ 260 (304)
...||.|..|+.
T Consensus 213 FdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 213 FDIIFGECPYCSDPIA 228 (234)
T ss_pred eeeeeccCCCCCCcce
Confidence 158999998875
No 271
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=27.94 E-value=34 Score=24.81 Aligned_cols=16 Identities=25% Similarity=0.621 Sum_probs=12.4
Q ss_pred cCCCCCCCCCCCCCCC
Q 022029 248 VDKVCLVCNKPCKERN 263 (304)
Q Consensus 248 ~~~~CPvC~~~f~~~d 263 (304)
+...|++|++++..+.
T Consensus 7 PH~HC~VCg~aIp~de 22 (64)
T COG4068 7 PHRHCVVCGKAIPPDE 22 (64)
T ss_pred CCccccccCCcCCCcc
Confidence 5678999999887643
No 272
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.85 E-value=31 Score=32.84 Aligned_cols=38 Identities=24% Similarity=0.522 Sum_probs=30.3
Q ss_pred CceeccCccccccCCcceEEEc-cCCccchHHHHHHHhhc
Q 022029 210 KSFICPSCKVTLTNTLSLVALS-SCGHVFCKKCADKFMAV 248 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~-~CGhVfc~~Ci~~~~k~ 248 (304)
..+.|-+|.+.+-+. |||--. --+|-||..|-.+.|+.
T Consensus 267 apLcCTLC~ERLEDT-HFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 267 APLCCTLCHERLEDT-HFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CceeehhhhhhhccC-ceeecCCCcccceecccCHHHHHh
Confidence 458999999999885 776422 24899999999999874
No 273
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=27.79 E-value=14 Score=21.75 Aligned_cols=11 Identities=18% Similarity=0.727 Sum_probs=6.5
Q ss_pred CCCCCCCCCCC
Q 022029 251 VCLVCNKPCKE 261 (304)
Q Consensus 251 ~CPvC~~~f~~ 261 (304)
.||.|+..|..
T Consensus 4 ~C~~CgR~F~~ 14 (25)
T PF13913_consen 4 PCPICGRKFNP 14 (25)
T ss_pred cCCCCCCEECH
Confidence 46666666643
No 274
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=27.76 E-value=51 Score=21.17 Aligned_cols=10 Identities=30% Similarity=1.119 Sum_probs=5.6
Q ss_pred eeccCccccc
Q 022029 212 FICPSCKVTL 221 (304)
Q Consensus 212 ~~CPIc~k~~ 221 (304)
+.||-|...|
T Consensus 3 i~Cp~C~~~y 12 (36)
T PF13717_consen 3 ITCPNCQAKY 12 (36)
T ss_pred EECCCCCCEE
Confidence 4566666554
No 275
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=27.54 E-value=43 Score=36.29 Aligned_cols=55 Identities=16% Similarity=0.405 Sum_probs=39.0
Q ss_pred CCceeccCccccccCCcceEEEccCCcc-----chHHHHHHHhh--cCCCCCCCCCCCCCCCce
Q 022029 209 DKSFICPSCKVTLTNTLSLVALSSCGHV-----FCKKCADKFMA--VDKVCLVCNKPCKERNLV 265 (304)
Q Consensus 209 ~~~~~CPIc~k~~~~~~~~v~l~~CGhV-----fc~~Ci~~~~k--~~~~CPvC~~~f~~~diI 265 (304)
+..-.|-||...=..... +.-||-|. +-.+|+-+|+. .+.+|-+|..+|+-+||-
T Consensus 10 ~d~~~CRICr~e~~~d~p--LfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY 71 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDP--LFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIY 71 (1175)
T ss_pred ccchhceeecCCCCCCCc--CcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeec
Confidence 345789999865433323 34577653 57899999986 567999999999876653
No 276
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=27.46 E-value=55 Score=21.09 Aligned_cols=24 Identities=17% Similarity=0.577 Sum_probs=13.9
Q ss_pred chHHHHHHHhhc--------CCCCCCCCCCCC
Q 022029 237 FCKKCADKFMAV--------DKVCLVCNKPCK 260 (304)
Q Consensus 237 fc~~Ci~~~~k~--------~~~CPvC~~~f~ 260 (304)
+|.+|++++... ...|+.||-.++
T Consensus 1 lC~~C~~Ey~~p~~RR~~~~~isC~~CGPr~~ 32 (35)
T PF07503_consen 1 LCDDCLKEYFDPSNRRFHYQFISCTNCGPRYS 32 (35)
T ss_dssp --HHHHHHHCSTTSTTTT-TT--BTTCC-SCC
T ss_pred CCHHHHHHHcCCCCCcccCcCccCCCCCCCEE
Confidence 578888887432 248999997765
No 277
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=27.46 E-value=19 Score=32.51 Aligned_cols=15 Identities=33% Similarity=0.642 Sum_probs=12.3
Q ss_pred cCCCCCCCCCCCCCC
Q 022029 248 VDKVCLVCNKPCKER 262 (304)
Q Consensus 248 ~~~~CPvC~~~f~~~ 262 (304)
+...||||++.|+.+
T Consensus 4 k~~~CPvC~~~F~~~ 18 (214)
T PF09986_consen 4 KKITCPVCGKEFKTK 18 (214)
T ss_pred CceECCCCCCeeeee
Confidence 456899999999754
No 278
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=26.82 E-value=31 Score=38.99 Aligned_cols=54 Identities=19% Similarity=0.420 Sum_probs=34.6
Q ss_pred ceeccCccccccCCcceEEEccCCccc-----hHHHHHHHhhc---CCCCCCCCCCCCCCCceEec
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVF-----CKKCADKFMAV---DKVCLVCNKPCKERNLVNVE 268 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVf-----c~~Ci~~~~k~---~~~CPvC~~~f~~~diI~L~ 268 (304)
.+.||-|....... .-..||... |..|=.++... ...||.|+.+.....-+.|+
T Consensus 667 ~rkCPkCG~~t~~~----fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~~i~ 728 (1337)
T PRK14714 667 RRRCPSCGTETYEN----RCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRRTIN 728 (1337)
T ss_pred EEECCCCCCccccc----cCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceEEec
Confidence 48999999853221 346788554 77775543211 23899999888766555554
No 279
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=26.71 E-value=91 Score=30.60 Aligned_cols=29 Identities=21% Similarity=0.470 Sum_probs=22.9
Q ss_pred hHHHHHHHhh--c-----------CCCCCCCCCCCCCCCceE
Q 022029 238 CKKCADKFMA--V-----------DKVCLVCNKPCKERNLVN 266 (304)
Q Consensus 238 c~~Ci~~~~k--~-----------~~~CPvC~~~f~~~diI~ 266 (304)
|-+|+-+|+. + .-.||.|+.+|.-.||-.
T Consensus 316 C~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV~~ 357 (358)
T PF10272_consen 316 CLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDVCY 357 (358)
T ss_pred HHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeeeec
Confidence 8899999864 2 248999999999888753
No 280
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=26.65 E-value=57 Score=26.23 Aligned_cols=34 Identities=9% Similarity=0.133 Sum_probs=26.6
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHHHh
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFM 246 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~ 246 (304)
.|.|-||++.+-....|-+.+. -++-++|+.+-+
T Consensus 2 kWkC~iCg~~I~~gqlFTF~~k--G~VH~~C~~~~~ 35 (101)
T PF09943_consen 2 KWKCYICGKPIYEGQLFTFTKK--GPVHYECFREKA 35 (101)
T ss_pred ceEEEecCCeeeecceEEEecC--CcEeHHHHHHHH
Confidence 5899999998877767766555 577899998754
No 281
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=26.58 E-value=43 Score=21.58 Aligned_cols=11 Identities=27% Similarity=1.059 Sum_probs=6.2
Q ss_pred eeccCcccccc
Q 022029 212 FICPSCKVTLT 222 (304)
Q Consensus 212 ~~CPIc~k~~~ 222 (304)
..||-|...|.
T Consensus 3 i~CP~C~~~f~ 13 (37)
T PF13719_consen 3 ITCPNCQTRFR 13 (37)
T ss_pred EECCCCCceEE
Confidence 45666665553
No 282
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=26.41 E-value=23 Score=34.14 Aligned_cols=56 Identities=23% Similarity=0.386 Sum_probs=39.2
Q ss_pred ccCCcceEEEccCCc-cchHHHHHHH-hhcCCCCCCCCCCCCCCCceEecCCCccccccCC
Q 022029 221 LTNTLSLVALSSCGH-VFCKKCADKF-MAVDKVCLVCNKPCKERNLVNVEKGGTGFAAHGD 279 (304)
Q Consensus 221 ~~~~~~~v~l~~CGh-Vfc~~Ci~~~-~k~~~~CPvC~~~f~~~diI~L~~~gtgfaa~g~ 279 (304)
|+|. -|+.+.+||| |||-.|..+. ++....|++|...+.. -+.|.+.+..|++-+.
T Consensus 143 ~tnt-~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~r--a~~i~d~dndf~~~la 200 (394)
T KOG2113|consen 143 FTNT-YIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTR--AGQIHDTDNDFAGQLA 200 (394)
T ss_pred cccc-eEeeeccCCCceEEEecCCcchhhhccccchhhhhhhh--hhccccCCcccccccc
Confidence 4554 5667789996 7898887665 4556679999988864 3445556778887543
No 283
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=26.20 E-value=18 Score=34.89 Aligned_cols=38 Identities=32% Similarity=0.629 Sum_probs=31.8
Q ss_pred CcCCCcceecccCCCCCce-ecCCCceeehhhHHHHHHH
Q 022029 36 SIKPFDACCLCLKPFIDPL-CCQKGHIYCKECILECLLS 73 (304)
Q Consensus 36 s~~~F~~C~LcL~p~~dPV-~t~~G~lyckEcIle~ll~ 73 (304)
.+-+-..|.||--=++||- ++..=|=|||.|||.||..
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~ 49 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE 49 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH
Confidence 3456678999999999998 4555899999999999985
No 284
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=26.03 E-value=17 Score=27.30 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=9.9
Q ss_pred eccCccccccCCcceEEEccCCccchHHHHHH------H---h----hcCCCCCCCCCCCCC
Q 022029 213 ICPSCKVTLTNTLSLVALSSCGHVFCKKCADK------F---M----AVDKVCLVCNKPCKE 261 (304)
Q Consensus 213 ~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~------~---~----k~~~~CPvC~~~f~~ 261 (304)
.|.+|...|.+...++.--.--|.|....... + + .....|++|++.|..
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s 62 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRS 62 (100)
T ss_dssp ------------------------------------------------SSEEBSSSS-EESS
T ss_pred CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccCCCCcC
Confidence 37888888777543332222334443221111 1 1 123689999999864
No 285
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=25.45 E-value=25 Score=33.93 Aligned_cols=53 Identities=26% Similarity=0.401 Sum_probs=33.0
Q ss_pred CceeccC--ccccccCCcceEEEccCCccc-------hHHHHHHHh-h-cCCCCCCCCCCCCCC
Q 022029 210 KSFICPS--CKVTLTNTLSLVALSSCGHVF-------CKKCADKFM-A-VDKVCLVCNKPCKER 262 (304)
Q Consensus 210 ~~~~CPI--c~k~~~~~~~~v~l~~CGhVf-------c~~Ci~~~~-k-~~~~CPvC~~~f~~~ 262 (304)
..|.||| |.+.++++.-.-|-+-=||-- ..+-.+-|. + +..+|+||++.++.-
T Consensus 348 KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNl 411 (423)
T COG5189 348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNL 411 (423)
T ss_pred ceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccC
Confidence 5699998 999999976555555567611 111111111 1 335899999999753
No 286
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=25.40 E-value=2.3e+02 Score=22.73 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=16.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022029 73 SQKKDIQRKLVAHAAQQKQEKEEEEERLMLQKARELDAFD 112 (304)
Q Consensus 73 ~qkkei~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~F~ 112 (304)
+.++..+-.+++ |+.. .++++++++.+-+++.++|.
T Consensus 39 ~~~r~~r~~MKE-ER~K---~E~~~q~r~rES~~Er~K~~ 74 (121)
T PF10669_consen 39 HDSRQVRIRMKE-ERSK---KEEKRQKRNRESKRERQKFI 74 (121)
T ss_pred hhHHHHHHHHHH-HHHH---HHHHHHHHhhhhHHHHHhHH
Confidence 444444444444 3333 33333344444455566664
No 287
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.35 E-value=45 Score=35.34 Aligned_cols=44 Identities=27% Similarity=0.665 Sum_probs=31.4
Q ss_pred eccCccccccCCcceEEEccCCc-cchHHHHHHHhh--c----CCCCCCCCCCCC
Q 022029 213 ICPSCKVTLTNTLSLVALSSCGH-VFCKKCADKFMA--V----DKVCLVCNKPCK 260 (304)
Q Consensus 213 ~CPIc~k~~~~~~~~v~l~~CGh-Vfc~~Ci~~~~k--~----~~~CPvC~~~f~ 260 (304)
-|+||-....- +..-.||| .+|..|+.++.- . ...||+|...+.
T Consensus 2 ~c~ic~~s~~~----~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDF----VGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCccc----cccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 37787665433 46779999 999999988632 3 346699988664
No 288
>PHA00732 hypothetical protein
Probab=25.30 E-value=21 Score=27.19 Aligned_cols=37 Identities=32% Similarity=0.571 Sum_probs=22.1
Q ss_pred eeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCC
Q 022029 212 FICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCK 260 (304)
Q Consensus 212 ~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~ 260 (304)
+.|++|.+.|....... .|.-. ......|+.|++.|.
T Consensus 2 y~C~~Cgk~F~s~s~Lk-----~H~r~-------~H~~~~C~~CgKsF~ 38 (79)
T PHA00732 2 FKCPICGFTTVTLFALK-----QHARR-------NHTLTKCPVCNKSYR 38 (79)
T ss_pred ccCCCCCCccCCHHHHH-----HHhhc-------ccCCCccCCCCCEeC
Confidence 67999999987753211 11100 001237999999997
No 289
>PF15482 CCER1: Coiled-coil domain-containing glutamate-rich protein family 1
Probab=25.26 E-value=88 Score=27.69 Aligned_cols=28 Identities=21% Similarity=0.153 Sum_probs=19.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 022029 67 ILECLLSQKKDIQRKLVAHAAQQKQEKE 94 (304)
Q Consensus 67 Ile~ll~qkkei~r~~~~~e~~~~~~~~ 94 (304)
--++|.+|+=+.-++.++.|+||++...
T Consensus 184 TtQFlM~q~YqdMrqqeklerqq~a~ra 211 (214)
T PF15482_consen 184 TTQFLMNQKYQDMRQQEKLERQQEALRA 211 (214)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467888887766777777777755443
No 290
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.20 E-value=50 Score=31.80 Aligned_cols=34 Identities=26% Similarity=0.579 Sum_probs=29.0
Q ss_pred ceecccCCCC--Cc-eecCCCceeehhhHHHHHHHhh
Q 022029 42 ACCLCLKPFI--DP-LCCQKGHIYCKECILECLLSQK 75 (304)
Q Consensus 42 ~C~LcL~p~~--dP-V~t~~G~lyckEcIle~ll~qk 75 (304)
-|++|+.-+. |- +++|.-|.|-.-||-.||+..+
T Consensus 325 eCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~ 361 (374)
T COG5540 325 ECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYS 361 (374)
T ss_pred eEEEEhhhhcccceEEEeccCceechhHHHHHHhhhc
Confidence 5999999984 44 5999999999999999999543
No 291
>PF10197 Cir_N: N-terminal domain of CBF1 interacting co-repressor CIR; InterPro: IPR019339 This entry represents a 45 residue conserved region at the N-terminal end of a family of proteins referred to as CIRs (CBF1-interacting co-repressors). CBF1 (centromere-binding factor 1) acts as a transcription factor that causes repression by binding specifically to GTGGGAA motifs in responsive promoters, and it requires CIR as a co-repressor. CIR binds to histone deacetylase and to SAP30 and serves as a linker between CBF1 and the histone deacetylase complex []. It may also modulate splice site selection during alternative splicing of pre-mRNAs.
Probab=24.90 E-value=2e+02 Score=18.70 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022029 79 QRKLVAHAAQQKQEKEE 95 (304)
Q Consensus 79 ~r~~~~~e~~~~~~~~~ 95 (304)
+.+.+.|.+.++..+++
T Consensus 8 ~Nq~kVw~aEq~~~~E~ 24 (37)
T PF10197_consen 8 KNQEKVWKAEQKAEEEE 24 (37)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45667777777554333
No 292
>COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair]
Probab=24.66 E-value=1.2e+02 Score=32.75 Aligned_cols=50 Identities=26% Similarity=0.297 Sum_probs=33.0
Q ss_pred CcceecccCCCC---CceecCCCceeeh------hhHHHHHHHhhHHHHHHHHHHHHHH
Q 022029 40 FDACCLCLKPFI---DPLCCQKGHIYCK------ECILECLLSQKKDIQRKLVAHAAQQ 89 (304)
Q Consensus 40 F~~C~LcL~p~~---dPV~t~~G~lyck------EcIle~ll~qkkei~r~~~~~e~~~ 89 (304)
|.-|.-++.+.. +......||.+|+ --||+.|+.+|.++|++++.+..+-
T Consensus 438 ~Ni~p~T~~~~~~~~~~~~~~~~~~~~~~~~G~lp~il~~L~~~R~~~K~~~k~~~~~~ 496 (792)
T COG0417 438 YNISPDTLVEEDCSDDYSPPGVGHGFCKREKGFLPEILEELLDRRDEIKKKMKKEKDPS 496 (792)
T ss_pred hCCCcceecCCCccccccCCCCcccccccCCCchHHHHHHHHHHHHHHHHHhcccCChH
Confidence 444444444432 2223445777777 4799999999999999998854443
No 293
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=24.61 E-value=21 Score=35.94 Aligned_cols=36 Identities=25% Similarity=0.608 Sum_probs=25.7
Q ss_pred CceeccCccccccCCcceEEEccCCccchHHHHHHH
Q 022029 210 KSFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKF 245 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~ 245 (304)
.-..||+|...|+=.-+=---+-||-|+|..|.+-+
T Consensus 179 ~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~i 214 (505)
T KOG1842|consen 179 SVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFI 214 (505)
T ss_pred cccccccccchhhhHHHhhhhhhcchHHHHHHHHhc
Confidence 457899999998643111124579999999997754
No 294
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=24.43 E-value=21 Score=37.81 Aligned_cols=48 Identities=29% Similarity=0.701 Sum_probs=37.8
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHHHhh---cCCCCCCCCCCCCCC
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMA---VDKVCLVCNKPCKER 262 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k---~~~~CPvC~~~f~~~ 262 (304)
...||||....-.+ .+..|-|.||.-|+...+. ....|++|+....+.
T Consensus 21 ~lEc~ic~~~~~~p----~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 21 ILECPICLEHVKEP----SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hccCCceeEEeecc----chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 46899999977666 4789999999999987643 357899999666543
No 295
>KOG1696 consensus 60s ribosomal protein L19 [Translation, ribosomal structure and biogenesis]
Probab=24.31 E-value=2.4e+02 Score=24.94 Aligned_cols=34 Identities=15% Similarity=0.287 Sum_probs=21.3
Q ss_pred cCCCceeehhhH-HHHHHHhhHHHHHHHHHHHHHH
Q 022029 56 CQKGHIYCKECI-LECLLSQKKDIQRKLVAHAAQQ 89 (304)
Q Consensus 56 t~~G~lyckEcI-le~ll~qkkei~r~~~~~e~~~ 89 (304)
--.|++|-..+| +|||..-|.|-+|....-++.+
T Consensus 126 k~KGnvFKnK~~LmE~I~K~KAe~~r~K~LadQae 160 (193)
T KOG1696|consen 126 KVKGNVFKNKRVLMEHIHKSKAEKAREKLLADQAE 160 (193)
T ss_pred HHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346999966555 5777777777655554444433
No 296
>PF08432 Vfa1: AAA-ATPase Vps4-associated protein 1; InterPro: IPR013640 This is a family of fungal proteins of unknown function.
Probab=24.11 E-value=1.8e+02 Score=25.50 Aligned_cols=19 Identities=32% Similarity=0.642 Sum_probs=14.3
Q ss_pred cceecccCCCCCceecCCC
Q 022029 41 DACCLCLKPFIDPLCCQKG 59 (304)
Q Consensus 41 ~~C~LcL~p~~dPV~t~~G 59 (304)
-.|.+|..|...=++|++|
T Consensus 14 k~C~IC~KpsttVL~t~~~ 32 (182)
T PF08432_consen 14 KACFICYKPSTTVLITPDN 32 (182)
T ss_pred CceeEecCCCceEEecCCC
Confidence 5789999887766677754
No 297
>smart00746 TRASH metallochaperone-like domain.
Probab=24.00 E-value=66 Score=18.50 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=11.7
Q ss_pred CCCCCCCCC-CCCceEecCCCc
Q 022029 252 CLVCNKPCK-ERNLVNVEKGGT 272 (304)
Q Consensus 252 CPvC~~~f~-~~diI~L~~~gt 272 (304)
|++|+..+. ...-+.+..+|.
T Consensus 1 c~~C~~~~~~~~~~~~~~~~g~ 22 (39)
T smart00746 1 CSFCGKDIYNPGTGIMVVNDGK 22 (39)
T ss_pred CCCCCCCccCCCCceEEEECCE
Confidence 788888885 433333334443
No 298
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=23.89 E-value=75 Score=22.13 Aligned_cols=30 Identities=23% Similarity=0.485 Sum_probs=18.7
Q ss_pred eccCccccccCCcceEEEccCCccchHHHHHHH
Q 022029 213 ICPSCKVTLTNTLSLVALSSCGHVFCKKCADKF 245 (304)
Q Consensus 213 ~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~ 245 (304)
.|+||.+.+.--.++ -..=| .+|..|+.++
T Consensus 1 ~C~iCg~kigl~~~~--k~~DG-~iC~~C~~Kl 30 (51)
T PF14471_consen 1 KCAICGKKIGLFKRF--KIKDG-YICKDCLKKL 30 (51)
T ss_pred CCCccccccccccce--eccCc-cchHHHHHHh
Confidence 488888776553321 12335 6888888876
No 299
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.66 E-value=2e+02 Score=28.85 Aligned_cols=32 Identities=25% Similarity=0.595 Sum_probs=25.9
Q ss_pred cceecccCCCCCce----ecC-CCceeehhhHHHHHH
Q 022029 41 DACCLCLKPFIDPL----CCQ-KGHIYCKECILECLL 72 (304)
Q Consensus 41 ~~C~LcL~p~~dPV----~t~-~G~lyckEcIle~ll 72 (304)
.-|.+||-....|+ +.+ .||||--.||-.||.
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~ 41 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLG 41 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHh
Confidence 35889998877774 444 599999999999995
No 300
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=23.49 E-value=2.2e+02 Score=22.95 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022029 77 DIQRKLVAHAAQQKQEKEEEEERLMLQ 103 (304)
Q Consensus 77 ei~r~~~~~e~~~~~~~~~~~~~~~~~ 103 (304)
.|++-..+|-+|+++.+++.+..+.++
T Consensus 31 GIeKGIa~YKKQqK~KaRe~DK~rKk~ 57 (103)
T PF11169_consen 31 GIEKGIAEYKKQQKEKAREADKARKKQ 57 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 688889999999987777766555444
No 301
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=23.49 E-value=70 Score=32.11 Aligned_cols=60 Identities=25% Similarity=0.459 Sum_probs=34.5
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHHHhhcCCCCCCCCCCCCC----CCceEecCCCccc
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLVCNKPCKE----RNLVNVEKGGTGF 274 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~k~~~~CPvC~~~f~~----~diI~L~~~gtgf 274 (304)
-|.|-+|.+-+.+- .| .+..-+.|+|-.++-+-+ -.+|-+|+.++-. ++.|.|..-+..|
T Consensus 360 CF~Cv~C~r~ldgi-pF-tvd~~n~v~Cv~dfh~kf--APrCs~C~~PI~P~~G~~etvRvvamdr~f 423 (468)
T KOG1701|consen 360 CFTCVVCARCLDGI-PF-TVDSQNNVYCVPDFHKKF--APRCSVCGNPILPRDGKDETVRVVAMDRDF 423 (468)
T ss_pred ceEEEEeccccCCc-cc-cccCCCceeeehhhhhhc--CcchhhccCCccCCCCCcceEEEEEccccc
Confidence 36666666666553 22 234456666665554422 3689999999954 3455554443333
No 302
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=23.07 E-value=4.4e+02 Score=22.75 Aligned_cols=41 Identities=5% Similarity=-0.083 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022029 74 QKKDIQRKLVAHAAQQKQEKEEEEERLMLQKARELDAFDQQ 114 (304)
Q Consensus 74 qkkei~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~F~~~ 114 (304)
.|.+.+...++|+++.++.+.+..+..++.+++...+++..
T Consensus 56 ~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~ 96 (155)
T PRK06569 56 LTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIK 96 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677888877777777777777777777776643
No 303
>COG2174 RPL34A Ribosomal protein L34E [Translation, ribosomal structure and biogenesis]
Probab=22.93 E-value=69 Score=25.28 Aligned_cols=18 Identities=17% Similarity=0.488 Sum_probs=15.1
Q ss_pred EccCCccchHHHHHHHhh
Q 022029 230 LSSCGHVFCKKCADKFMA 247 (304)
Q Consensus 230 l~~CGhVfc~~Ci~~~~k 247 (304)
.++=|-++|..|+.+.+.
T Consensus 66 ~RpYGG~lc~~c~~~~i~ 83 (93)
T COG2174 66 ERPYGGYLCANCVRERIK 83 (93)
T ss_pred CCCcCceecHHHHHHHHH
Confidence 457799999999999864
No 304
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=22.65 E-value=20 Score=28.82 Aligned_cols=9 Identities=22% Similarity=0.715 Sum_probs=4.3
Q ss_pred CCCCCCCCC
Q 022029 251 VCLVCNKPC 259 (304)
Q Consensus 251 ~CPvC~~~f 259 (304)
.|+.||..+
T Consensus 33 ~C~~CGe~~ 41 (127)
T TIGR03830 33 YCPACGEEL 41 (127)
T ss_pred ECCCCCCEE
Confidence 455555444
No 305
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=22.30 E-value=1.5e+02 Score=25.79 Aligned_cols=13 Identities=31% Similarity=0.808 Sum_probs=7.8
Q ss_pred ccCCCCcCCCcce
Q 022029 31 RLGKDSIKPFDAC 43 (304)
Q Consensus 31 Rlg~ds~~~F~~C 43 (304)
|.|..--..||+|
T Consensus 102 ~~s~~k~~n~dsc 114 (162)
T PF13019_consen 102 RMSSKKTTNFDSC 114 (162)
T ss_pred HhhcccCCCcccc
Confidence 4444444568888
No 306
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=22.25 E-value=41 Score=26.30 Aligned_cols=19 Identities=21% Similarity=0.515 Sum_probs=12.2
Q ss_pred CCCCCCCCCCCCCCCceEe
Q 022029 249 DKVCLVCNKPCKERNLVNV 267 (304)
Q Consensus 249 ~~~CPvC~~~f~~~diI~L 267 (304)
...|+.|+.++.--|+|+|
T Consensus 33 rS~C~~C~~~L~~~~lIPi 51 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWDLIPI 51 (92)
T ss_pred CCcCcCCCCcCcccccchH
Confidence 3466666666666666665
No 307
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=22.02 E-value=60 Score=25.44 Aligned_cols=10 Identities=40% Similarity=1.009 Sum_probs=5.4
Q ss_pred ceeccCcccc
Q 022029 211 SFICPSCKVT 220 (304)
Q Consensus 211 ~~~CPIc~k~ 220 (304)
.+.||.|.+.
T Consensus 35 ~~~Cp~C~~~ 44 (89)
T COG1997 35 KHVCPFCGRT 44 (89)
T ss_pred CCcCCCCCCc
Confidence 4555555554
No 308
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=21.91 E-value=21 Score=24.08 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=17.8
Q ss_pred CCCCCccCCCCCCcCCCCCce
Q 022029 171 APSASTICPEGKEKLKLKSLF 191 (304)
Q Consensus 171 kp~~~~~CP~sg~~l~lKDLi 191 (304)
+|-...+|-+||.++-|.||-
T Consensus 3 ~pG~~V~CAVTg~~IpLd~Lr 23 (42)
T PF09866_consen 3 SPGSFVRCAVTGQPIPLDELR 23 (42)
T ss_pred cCCCEEEEEeeCCcccHHHhc
Confidence 466788999999999998885
No 309
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=21.84 E-value=44 Score=28.29 Aligned_cols=23 Identities=30% Similarity=0.832 Sum_probs=15.5
Q ss_pred eccCccccccCCcceEEEccCCccchHHHHHH
Q 022029 213 ICPSCKVTLTNTLSLVALSSCGHVFCKKCADK 244 (304)
Q Consensus 213 ~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~ 244 (304)
.||.|.+.|... |.-+|.+|+++
T Consensus 5 nC~~CgklF~~~---------~~~iCp~C~~~ 27 (137)
T TIGR03826 5 NCPKCGRLFVKT---------GRDVCPSCYEE 27 (137)
T ss_pred cccccchhhhhc---------CCccCHHHhHH
Confidence 688888877442 55677777753
No 310
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=21.74 E-value=50 Score=20.16 Aligned_cols=15 Identities=40% Similarity=0.871 Sum_probs=11.8
Q ss_pred CceeccCccccccCC
Q 022029 210 KSFICPSCKVTLTNT 224 (304)
Q Consensus 210 ~~~~CPIc~k~~~~~ 224 (304)
+.+.|.+|...|++.
T Consensus 2 ~~~~C~~C~~~~~~~ 16 (35)
T smart00451 2 GGFYCKLCNVTFTDE 16 (35)
T ss_pred cCeEccccCCccCCH
Confidence 357899999988864
No 311
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=21.60 E-value=52 Score=26.67 Aligned_cols=14 Identities=29% Similarity=0.729 Sum_probs=9.4
Q ss_pred CceeccCccccccC
Q 022029 210 KSFICPSCKVTLTN 223 (304)
Q Consensus 210 ~~~~CPIc~k~~~~ 223 (304)
.+.+||-|...|-+
T Consensus 8 tKR~Cp~CG~kFYD 21 (108)
T PF09538_consen 8 TKRTCPSCGAKFYD 21 (108)
T ss_pred CcccCCCCcchhcc
Confidence 45677777777644
No 312
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=21.36 E-value=50 Score=32.12 Aligned_cols=25 Identities=20% Similarity=0.611 Sum_probs=18.2
Q ss_pred chHHHHHHH-----hhcCCCCCCCCCCCCC
Q 022029 237 FCKKCADKF-----MAVDKVCLVCNKPCKE 261 (304)
Q Consensus 237 fc~~Ci~~~-----~k~~~~CPvC~~~f~~ 261 (304)
-|..|..++ ....+.||.||..+++
T Consensus 248 AC~rC~t~y~le~A~~~~wrCpkCGg~ikK 277 (403)
T COG1379 248 ACSRCYTRYSLEEAKSLRWRCPKCGGKIKK 277 (403)
T ss_pred HHHHhhhccCcchhhhhcccCcccccchhh
Confidence 477777443 3456899999998875
No 313
>PF06689 zf-C4_ClpX: ClpX C4-type zinc finger; InterPro: IPR010603 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The ClpX heat shock protein of Escherichia coli is a member of the universally conserved Hsp100 family of proteins, and possesses a putative zinc finger motif of the C4 type []. This presumed zinc binding domain (ZBD) is found at the N terminus of the ClpX protein. ClpX is an ATPase which functions both as a substrate specificity component of the ClpXP protease and as a molecular chaperone. ZBD is a member of the treble clef zinc finger family, a motif known to facilitate protein-ligand, protein-DNA, and protein-protein interactions and forms a constitutive dimer that is essential for the degradation of some, but not all, ClpX substrates []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0016887 ATPase activity, 0046983 protein dimerization activity, 0006200 ATP catabolic process, 0019538 protein metabolic process; PDB: 2DS8_B 2DS6_B 2DS5_A 1OVX_A 2DS7_A.
Probab=21.33 E-value=1.1e+02 Score=20.15 Aligned_cols=33 Identities=18% Similarity=0.438 Sum_probs=20.9
Q ss_pred eeccCccccccCCcceEEEccCCccchHHHHHHH
Q 022029 212 FICPSCKVTLTNTLSLVALSSCGHVFCKKCADKF 245 (304)
Q Consensus 212 ~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~ 245 (304)
..|..|.+.-+...+++ .-+=|-.+|.+|+...
T Consensus 2 ~~CSFCgr~~~~v~~li-~g~~~~~IC~~Cv~~~ 34 (41)
T PF06689_consen 2 KRCSFCGRPESEVGRLI-SGPNGAYICDECVEQA 34 (41)
T ss_dssp -B-TTT--BTTTSSSEE-EES-SEEEEHHHHHHH
T ss_pred CCccCCCCCHHHHhcee-cCCCCcEECHHHHHHH
Confidence 47999999988765544 3343677899999875
No 314
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=21.08 E-value=43 Score=27.17 Aligned_cols=47 Identities=26% Similarity=0.400 Sum_probs=26.7
Q ss_pred ceeccCccccccCC-cceEEEccCCccchHHHHHHHh-hcCCCCCCCCC
Q 022029 211 SFICPSCKVTLTNT-LSLVALSSCGHVFCKKCADKFM-AVDKVCLVCNK 257 (304)
Q Consensus 211 ~~~CPIc~k~~~~~-~~~v~l~~CGhVfc~~Ci~~~~-k~~~~CPvC~~ 257 (304)
.-.|.+|...|+-- ..-..-..|+|.+|..|-...- ...+.|-+|.+
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHH
Confidence 34899998876432 1224567889999988844311 13456666643
No 315
>PF01667 Ribosomal_S27e: Ribosomal protein S27; InterPro: IPR000592 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families include mammalian, yeast, Chlamydomonas reinhardtii and Entamoeba histolytica S27, and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0250 []. These proteins have from 62 to 87 amino acids. They contain, in their central section, a putative zinc-finger region of the type C-x(2)-C-x(14)-C-x(2)-C.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1QXF_A 3IZ6_X 2XZN_6 2XZM_6 3U5G_b 3IZB_X 3U5C_b.
Probab=21.03 E-value=69 Score=22.88 Aligned_cols=28 Identities=25% Similarity=0.672 Sum_probs=15.9
Q ss_pred eeccCccc---cccCCcceEEEccCCccchH
Q 022029 212 FICPSCKV---TLTNTLSLVALSSCGHVFCK 239 (304)
Q Consensus 212 ~~CPIc~k---~~~~~~~~v~l~~CGhVfc~ 239 (304)
..||-|.. +|++++..|.-..||.++|.
T Consensus 8 VkCp~C~~~q~vFSha~t~V~C~~Cg~~L~~ 38 (55)
T PF01667_consen 8 VKCPGCYNIQTVFSHAQTVVKCVVCGTVLAQ 38 (55)
T ss_dssp EE-TTT-SEEEEETT-SS-EE-SSSTSEEEE
T ss_pred EECCCCCCeeEEEecCCeEEEcccCCCEecC
Confidence 46888875 57777666666777777763
No 316
>cd05534 POLBc_zeta DNA polymerase type-B zeta subfamily catalytic domain. DNA polymerase (Pol) zeta is a member of the eukaryotic B-family of DNA polymerases and distantly related to DNA Pol delta. Pol zeta plays a major role in translesion replication and the production of either spontaneous or induced mutations. Apart from its role in translesion replication, Pol zeta also appears to be involved in somatic hypermutability in B lymphocytes, an important element for the production of high affinity antibodies in response to an antigen.
Probab=20.93 E-value=1.7e+02 Score=29.48 Aligned_cols=33 Identities=15% Similarity=0.295 Sum_probs=25.2
Q ss_pred eecCCCceeehh--------hHHHHHHHhhHHHHHHHHHHH
Q 022029 54 LCCQKGHIYCKE--------CILECLLSQKKDIQRKLVAHA 86 (304)
Q Consensus 54 V~t~~G~lyckE--------cIle~ll~qkkei~r~~~~~e 86 (304)
+++|.|+.|.++ .||+.|+..|+++|++++...
T Consensus 113 ~~~p~~~~f~~~~~~~Gilp~iL~~Ll~~R~~~K~~mk~~~ 153 (451)
T cd05534 113 TISPNGVMFVKKSVRKGILPKMLEEILDTRIMVKKAMKKYK 153 (451)
T ss_pred EECCCcceeecCCCCCCchHHHHHHHHHHHHHHHHHHhhCC
Confidence 367899999976 367777888888888877643
No 317
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=20.71 E-value=49 Score=19.07 Aligned_cols=13 Identities=31% Similarity=0.759 Sum_probs=10.3
Q ss_pred eeccCccccccCC
Q 022029 212 FICPSCKVTLTNT 224 (304)
Q Consensus 212 ~~CPIc~k~~~~~ 224 (304)
+.|.+|.+.|.+.
T Consensus 2 ~~C~~C~~~F~~~ 14 (27)
T PF13912_consen 2 FECDECGKTFSSL 14 (27)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCccCCccCCh
Confidence 6788888888764
No 318
>COG1422 Predicted membrane protein [Function unknown]
Probab=20.54 E-value=3.2e+02 Score=24.65 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=13.5
Q ss_pred hHHHHHHHhh---HHHHHHHHHHHHHHHHHHH
Q 022029 66 CILECLLSQK---KDIQRKLVAHAAQQKQEKE 94 (304)
Q Consensus 66 cIle~ll~qk---kei~r~~~~~e~~~~~~~~ 94 (304)
.|+.+++.-. +++++.++++.+..++.++
T Consensus 62 ~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~ 93 (201)
T COG1422 62 TILQKLLIDQEKMKELQKMMKEFQKEFREAQE 93 (201)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555332 3455555555444443333
No 319
>PRK07218 replication factor A; Provisional
Probab=20.47 E-value=73 Score=31.95 Aligned_cols=25 Identities=24% Similarity=0.229 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCCCCceE--ecCCCccc
Q 022029 250 KVCLVCNKPCKERNLVN--VEKGGTGF 274 (304)
Q Consensus 250 ~~CPvC~~~f~~~diI~--L~~~gtgf 274 (304)
+.||.|++.=-..|++. +-..|||+
T Consensus 310 ~~C~~hG~ve~~~dlrik~vLDDGtg~ 336 (423)
T PRK07218 310 GQCRSHGAVEGEDDLRIKAILDDGTGS 336 (423)
T ss_pred CcCCCCCCcCCeeeeEEEEEEECCCCe
Confidence 68999997644444332 24666765
No 320
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=20.44 E-value=47 Score=26.81 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=15.3
Q ss_pred EccCCccchHHHHHHHhhcCCCCCCCCC
Q 022029 230 LSSCGHVFCKKCADKFMAVDKVCLVCNK 257 (304)
Q Consensus 230 l~~CGhVfc~~Ci~~~~k~~~~CPvC~~ 257 (304)
-..|||||..- .+.+. .-||.||-
T Consensus 5 CtrCG~vf~~g--~~~il--~GCp~CG~ 28 (112)
T COG3364 5 CTRCGEVFDDG--SEEIL--SGCPKCGC 28 (112)
T ss_pred ecccccccccc--cHHHH--ccCccccc
Confidence 35799999764 22222 36898883
No 321
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.40 E-value=63 Score=29.92 Aligned_cols=19 Identities=32% Similarity=0.579 Sum_probs=14.3
Q ss_pred HhhcCCCCCCCCCCCCCCC
Q 022029 245 FMAVDKVCLVCNKPCKERN 263 (304)
Q Consensus 245 ~~k~~~~CPvC~~~f~~~d 263 (304)
+.+....||||+..|..+.
T Consensus 15 f~kk~ieCPvC~tkFkkee 33 (267)
T COG1655 15 FYKKTIECPVCNTKFKKEE 33 (267)
T ss_pred HhhceeccCcccchhhhhh
Confidence 3456678999999998753
No 322
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=20.07 E-value=37 Score=34.03 Aligned_cols=33 Identities=21% Similarity=0.636 Sum_probs=20.1
Q ss_pred ceeccCccccccCCcceEEEccCCccchHHHHHHHh
Q 022029 211 SFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFM 246 (304)
Q Consensus 211 ~~~CPIc~k~~~~~~~~v~l~~CGhVfc~~Ci~~~~ 246 (304)
-|.|-.|.+.|.... +|... |-+||+.|++.-+
T Consensus 302 CFtC~~C~r~L~Gq~--FY~v~-~k~~CE~cyq~tl 334 (468)
T KOG1701|consen 302 CFTCRTCRRQLAGQS--FYQVD-GKPYCEGCYQDTL 334 (468)
T ss_pred ceehHhhhhhhcccc--ccccC-CcccchHHHHHHH
Confidence 367777777776652 23333 6677777776543
No 323
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=20.03 E-value=56 Score=25.87 Aligned_cols=31 Identities=35% Similarity=0.851 Sum_probs=10.2
Q ss_pred CcceecccCCC--CCce--ecCCCceeehhhHHHHH
Q 022029 40 FDACCLCLKPF--IDPL--CCQKGHIYCKECILECL 71 (304)
Q Consensus 40 F~~C~LcL~p~--~dPV--~t~~G~lyckEcIle~l 71 (304)
++.|.+|-.++ .|+. .|+.||+|.| |.|.+|
T Consensus 14 ~E~C~~C~~~i~~~~~~~~~C~~GH~w~R-C~lT~l 48 (99)
T PF12660_consen 14 FEKCPICGAPIPFDDLDEAQCENGHVWPR-CALTFL 48 (99)
T ss_dssp ---------------SSEEE-TTS-EEEB--SSS-S
T ss_pred cccccccccccccCCcCEeECCCCCEEee-eeeeee
Confidence 58899999876 4653 6999999987 555554
Done!