BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022030
(303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
pdb|2AJ1|A Chain A, Solution Structure Of Apocada
Length = 71
Score = 37.4 bits (85), Expect = 0.011, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 35 LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKE 79
L C CA K +R +K EGV + + GA+K+TVTG+ ++++
Sbjct: 12 LSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEASIQQVEQ 56
>pdb|2XMV|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|C Chain C, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|D Chain D, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|E Chain E, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|F Chain F, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMM|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
pdb|2XMM|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
Length = 64
Score = 32.0 bits (71), Expect = 0.47, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 37 CEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLK 78
CE CA+ + +A++N + V+ D + KVT+T + +L+
Sbjct: 12 CEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLR 53
>pdb|4A46|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 31.6 bits (70), Expect = 0.58, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 37 CEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLK 78
CE CA+ + +A++N + V+ D + KVT+T + +L+
Sbjct: 11 CEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLR 52
>pdb|1SB6|A Chain A, Solution Structure Of A Cyanobacterial Copper
Metallochaperone, Scatx1
pdb|2XMT|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMT|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMU|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMU|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMJ|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMJ|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMK|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
pdb|2XMK|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
Length = 64
Score = 31.6 bits (70), Expect = 0.59, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 37 CEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLK 78
CE CA+ + +A++N + V+ D + KVT+T + +L+
Sbjct: 12 CEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLR 53
>pdb|2LDI|A Chain A, Nmr Solution Structure Of Ziaan Sub Mutant
Length = 71
Score = 31.2 bits (69), Expect = 0.72, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 35 LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVT---GKVEPAKLKERLEA 83
+ C CA I+RA++ +GV + ++TVT +V ++ER+ A
Sbjct: 12 MRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAA 63
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 35 LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKERL 81
+HCE C IK +KN G+ + D ++V V P+ + L
Sbjct: 15 MHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTL 61
>pdb|4A47|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 35 LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLK 78
+ C CA+ + +A++N + V+ D + KVT+T + +L+
Sbjct: 9 MDCTSCAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLR 52
>pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
pdb|1QUP|B Chain B, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
Length = 222
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 36 HCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKERL 81
HCE C IK +KN G+ + D +V V P+ + L
Sbjct: 15 HCENCVNDIKACLKNVPGINSLNFDIEQQIXSVESSVAPSTIINTL 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,527,585
Number of Sequences: 62578
Number of extensions: 152821
Number of successful extensions: 379
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 359
Number of HSP's gapped (non-prelim): 20
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)