BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022030
(303 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26
OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
Length = 153
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 47/71 (66%)
Query: 21 KKDDGVVTVVLKVDLHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKER 80
KK + TV +KV + CEGC +K++R+++ +GV V + A+KVTV G V+P K+ R
Sbjct: 20 KKRKQLQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDPNKVVAR 79
Query: 81 LEAKTKKKVDL 91
+ +T KKV+L
Sbjct: 80 MSHRTGKKVEL 90
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 123 KKPPKESTVVLKIRLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPY 182
KK + TV +K+++ CEGC K+++ + KGV +VT++ VTV G +D ++V
Sbjct: 20 KKRKQLQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDPNKVVAR 79
Query: 183 LKEKLKRNVEVVP 195
+ + + VE+ P
Sbjct: 80 MSHRTGKKVELWP 92
>sp|Q64430|ATP7A_MOUSE Copper-transporting ATPase 1 OS=Mus musculus GN=Atp7a PE=1 SV=3
Length = 1491
Score = 41.2 bits (95), Expect = 0.010, Method: Composition-based stats.
Identities = 34/162 (20%), Positives = 70/162 (43%), Gaps = 9/162 (5%)
Query: 7 GDKKAAGAAADAGGKKDDGVVTVVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANK 65
G ++ A + G V + +KV+ + C C I+ + +GV +K +
Sbjct: 151 GTQEKKSGACEEHSTPQAGEVMLKMKVEGMTCHSCTSTIEGKVGKLQGVQRIKVSLDNQE 210
Query: 66 VTVTGK---VEPAKLKERLEAKTKKKVDLVSPQPKKDAGGGEKKSEEKSEKKPDDKKSEE 122
T+ + + ++K+++EA + QPK G K+ + S++
Sbjct: 211 ATIVFQPHLITAEEIKKQIEAVGFPA--FIKKQPKYLKLGAIDVERLKNTPVKSSEGSQQ 268
Query: 123 KKP--PKESTVVLKIR-LHCEGCISKIKKIIYKTKGVDNVTI 161
K P P +ST + I +HC+ C+S I+ + + V ++ +
Sbjct: 269 KSPSYPSDSTTMFTIEGMHCKSCVSNIESALSTLQYVSSIVV 310
>sp|Q60048|CADA_LISMN Probable cadmium-transporting ATPase OS=Listeria monocytogenes
GN=cadA PE=1 SV=1
Length = 711
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 30 VLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTG-----KVEPAKLKERL 81
V +VD L C CA K +R +K EGV + + GA+K+TVTG +VE A E L
Sbjct: 6 VYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEASIQQVEQAGAFEHL 63
>sp|P58414|CADA_LISMO Probable cadmium-transporting ATPase OS=Listeria monocytogenes
serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=cadA PE=3
SV=1
Length = 707
Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 32 KVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLK 78
+VD + C CA K ++ +KN EGV D K + GA K++V G+ ++++
Sbjct: 11 RVDGMSCTNCAGKFEKNVKNLEGVTDAKVNFGAGKISVYGETSISQIE 58
>sp|P70705|ATP7A_RAT Copper-transporting ATPase 1 OS=Rattus norvegicus GN=Atp7a PE=1
SV=1
Length = 1492
Score = 38.5 bits (88), Expect = 0.059, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 69/162 (42%), Gaps = 9/162 (5%)
Query: 7 GDKKAAGAAADAGGKKDDGVVTVVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANK 65
G ++ ++ G V + ++V+ + C C I+ + +GV +K +
Sbjct: 151 GTQEKKSGTSEEHSTPQAGEVLLKMRVEGMTCHSCTSTIEGKVGKLQGVQRIKVSLDNQE 210
Query: 66 VTVTGK---VEPAKLKERLEAKTKKKVDLVSPQPKKDAGGGEKKSEEKSEKKPDDKKSEE 122
T+ + + ++K+++EA + QPK G KS + S++
Sbjct: 211 ATIVYQPHLITAEEIKKQIEAVGFPA--FIKKQPKYLKLGAIDVERLKSTPVKSSEGSQQ 268
Query: 123 KKP--PKESTVVLKIR-LHCEGCISKIKKIIYKTKGVDNVTI 161
K P P +S + I +HC+ C+S I+ + + V ++ +
Sbjct: 269 KSPAYPSDSAITFTIDGMHCKSCVSNIESALSTLQYVSSIVV 310
>sp|P20021|CADA1_STAAU Probable cadmium-transporting ATPase OS=Staphylococcus aureus
GN=cadA PE=3 SV=1
Length = 727
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 17/114 (14%)
Query: 35 LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKERLEAKTKKKVDLVSP 94
C CA K ++ +K GV D K + GA+K+ V G +L++ + K VSP
Sbjct: 21 FTCANCAGKFEKNVKKIPGVQDAKVNFGASKIDVYGNASVEELEKAGAFENLK----VSP 76
Query: 95 QPKKDAGGGEKKSEEKSEKKPDDKKS--EEKKPP--KESTVVLKIRLHCEGCIS 144
EK + + ++ DD K+ EEK P K ST++ L G +S
Sbjct: 77 ---------EKLANQTIQRVKDDTKAHKEEKTPFYKKHSTLLFATLLIAFGYLS 121
>sp|Q6CIG2|CCS1_KLULA Superoxide dismutase 1 copper chaperone OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=CCS1 PE=3 SV=1
Length = 245
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 33 VDLHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKERL 81
V++HCE C I++ +K+ G+ +V D N + V G P+ + L
Sbjct: 15 VEMHCESCTNDIQKCLKDVNGIKNVTFDIKDNLMNVEGHAAPSAIINAL 63
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 135 IRLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPYLK 184
+ +HCE C + I+K + G+ NVT D +L+ V+G ++ LK
Sbjct: 15 VEMHCESCTNDIQKCLKDVNGIKNVTFDIKDNLMNVEGHAAPSAIINALK 64
>sp|P35670|ATP7B_HUMAN Copper-transporting ATPase 2 OS=Homo sapiens GN=ATP7B PE=1 SV=4
Length = 1465
Score = 37.0 bits (84), Expect = 0.20, Method: Composition-based stats.
Identities = 42/185 (22%), Positives = 79/185 (42%), Gaps = 28/185 (15%)
Query: 29 VVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGK---VEPAKLKERL--- 81
V L+V+ + C+ C I+ ++ +GVV VK + +T + ++P L++ +
Sbjct: 145 VKLRVEGMTCQSCVSSIEGKVRKLQGVVRVKVSLSNQEAVITYQPYLIQPEDLRDHVNDM 204
Query: 82 --EAKTKKKVDLVSPQPKKDAGGGEKKSEEKSEKKP------DDKKSEEKKPPKESTVVL 133
EA K KV +S P ++ + + K+P + SE V L
Sbjct: 205 GFEAAIKSKVAPLSLGPIDI-----ERLQSTNPKRPLSSANQNFNNSETLGHQGSHVVTL 259
Query: 134 KIR---LHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPYLKEKLKRN 190
++R +HC+ C+ I++ I + GV ++ + VK V L+R
Sbjct: 260 QLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPV-----ALQRA 314
Query: 191 VEVVP 195
+E +P
Sbjct: 315 IEALP 319
Score = 31.6 bits (70), Expect = 8.1, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 7/155 (4%)
Query: 20 GKKDDGVVTVVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVT---GKVEPA 75
G + VVT+ L++D +HC+ C I+ + GV ++ V P
Sbjct: 250 GHQGSHVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPV 309
Query: 76 KLKERLEAKTKKKVDLVSPQPKKDAGGGEKKSEEKSEKKPDDKKSEEKKPPKESTVVLKI 135
L+ +EA + P + +G + S S + + +T++
Sbjct: 310 ALQRAIEALPPGNFKVSLPDGAEGSGTDHRSSSSHSPGS---PPRNQVQGTCSTTLIAIA 366
Query: 136 RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTV 170
+ C C+ I+ +I + +GV +++ + TV
Sbjct: 367 GMTCASCVHSIEGMISQLEGVQQISVSLAEGTATV 401
>sp|Q64535|ATP7B_RAT Copper-transporting ATPase 2 OS=Rattus norvegicus GN=Atp7b PE=2
SV=1
Length = 1451
Score = 36.6 bits (83), Expect = 0.24, Method: Composition-based stats.
Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 16/166 (9%)
Query: 11 AAGAAADAGGKKDDGVVTVV-LKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTV 68
A G AA + VV L+V+ + C+ C I+ ++ +GVV VK + +
Sbjct: 125 AEGKAASWPSRSSPAQEAVVKLRVEGMTCQSCVSSIEGKIRKLQGVVRVKVSLSNQEAVI 184
Query: 69 TGK---VEPAKLKERL-----EAKTKKKVDLVSPQPKKDAGGGEKKSEEKSEKKPDDKKS 120
T + ++P L++ + EA K + + P D E + +++ P +
Sbjct: 185 TYQPYLIQPEDLRDHICDMGFEAAIKNRTAPLRLGP-IDINKLESTNLKRAAVPPIQNSN 243
Query: 121 EEKKPPKE----STVVLKIR-LHCEGCISKIKKIIYKTKGVDNVTI 161
+ P + +T+ L+I +HC+ C+ I+ I + GV N+ +
Sbjct: 244 HLETPGHQQNHLATLPLRIDGMHCKSCVLNIEGNIGQLPGVQNIHV 289
Score = 35.0 bits (79), Expect = 0.61, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 22/138 (15%)
Query: 25 GVVTVVLKVDLHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKERLEAK 84
GVV+++ + C C K I+ + + +G+V +K TV K P+ L
Sbjct: 59 GVVSIL---GMTCHSCVKSIEDRISSLKGIVSIKVSLEQGSATV--KYVPSVL------- 106
Query: 85 TKKKVDLVSPQPKKDAGGGEKKSEEKSEKKPDDKKSEEKKPPKESTVVLKIR-LHCEGCI 143
+ + Q +D G +E K+ P P +E+ V L++ + C+ C+
Sbjct: 107 ---NLQQICLQ-IEDMGFEASAAEGKAASWP-----SRSSPAQEAVVKLRVEGMTCQSCV 157
Query: 144 SKIKKIIYKTKGVDNVTI 161
S I+ I K +GV V +
Sbjct: 158 SSIEGKIRKLQGVVRVKV 175
>sp|Q6BK66|CCS1_DEBHA Superoxide dismutase 1 copper chaperone OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=CCS1 PE=3 SV=2
Length = 250
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 29 VVLKVDLHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKERLEAKTKKK 88
+V V + C+ C + ++K+ G+ D +N VT G V P+++ + +++ K
Sbjct: 7 IVFAVPMECQSCVDSVSSSLKSLNGISKYDIDLKSNLVTTEGSVPPSEIVKAIQSTGKDA 66
Query: 89 V 89
+
Sbjct: 67 I 67
>sp|Q6BZU2|CCS1_YARLI Superoxide dismutase 1 copper chaperone OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=CCS1 PE=3 SV=1
Length = 234
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%)
Query: 28 TVVLKVDLHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKERLEAKTKK 87
T V L CE C +K+A+ N +G+ V ++VTG P+++ + ++ K
Sbjct: 4 TTTFAVPLECESCCDSVKQALANVQGIESVDCKLVDQLISVTGTSAPSQIVKAVQNIGKD 63
Query: 88 KVDLVSPQPKKDA 100
+ + QP A
Sbjct: 64 AIVRGTGQPNSAA 76
>sp|P37386|CADA2_STAAU Probable cadmium-transporting ATPase OS=Staphylococcus aureus
GN=cadA PE=3 SV=1
Length = 804
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 29/164 (17%)
Query: 35 LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKERLEAKTKKKVDLVSP 94
C CA K ++ +K GV D K + GA+K+ V G E LE
Sbjct: 20 FSCANCAGKFEKNVKELSGVHDAKVNFGASKIDVFGSATV----EDLE------------ 63
Query: 95 QPKKDAGGGEKKSEEKSEKKPDDKKSEEKKPPKESTVVLKIR-LHCEGCISKIKKIIYKT 153
K A K + EK+ ++ + +E+K V ++ C C K +K + +
Sbjct: 64 --KAGAFENLKVAPEKARRRVEPVVTEDKN-------VYRVEGFSCANCAGKFEKNVKQL 114
Query: 154 KGVDNVTIDGGKDLVTVKGTMDVKELVPYLKEKLKRNVEVVPAK 197
GV + ++ G + V G V+EL K N++V+P K
Sbjct: 115 AGVQDAKVNFGASKIDVYGNASVEELE---KAGAFENLKVIPEK 155
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 35 LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKERLEAKTKKKVDLVSP 94
C CA K ++ +K GV D K + GA+K+ V G A ++E +A + + ++
Sbjct: 98 FSCANCAGKFEKNVKQLAGVQDAKVNFGASKIDVYGN---ASVEELEKAGAFENLKVI-- 152
Query: 95 QPKKDAGGGEKKSEEKSEKKPDDKKSEEKKPP---KESTVVLKIRLHCEGCIS 144
P+K A + +E D K +E+K P K ST++ L G +S
Sbjct: 153 -PEKLANPSIQAVKE------DTKAPKEEKIPFYKKHSTLLFATLLIAFGYLS 198
>sp|Q6GIX1|CADA_STAAR Probable cadmium-transporting ATPase OS=Staphylococcus aureus
(strain MRSA252) GN=cadA PE=3 SV=1
Length = 726
Score = 34.7 bits (78), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 15/113 (13%)
Query: 35 LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKERLEAKTKKKVDLVSP 94
C CA K ++ +K GV D K + GA+K+ V G +L E+ A KV
Sbjct: 20 FSCANCAGKFEKNVKQLAGVQDAKVNFGASKIDVYGNASVQEL-EKAGAFENLKV----- 73
Query: 95 QPKKDAGGGEKKSEEKSEKKPDDKKSEEKKPP---KESTVVLKIRLHCEGCIS 144
P+K A + +E D K +E+K P K ST++ L G +S
Sbjct: 74 FPEKLANSSMQAVKE------DTKAPKEEKIPFYKKHSTLLFATLLIAFGYLS 120
>sp|P30336|CADA_BACPE Probable cadmium-transporting ATPase OS=Bacillus pseudofirmus
(strain OF4) GN=cadA PE=3 SV=2
Length = 723
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 35 LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKERLEAKTKKKVDLVSP 94
C CA K ++ +K GV D K + GA+K+ V G A ++E +A + + V+P
Sbjct: 21 FTCANCAGKFEKNVKQLSGVEDAKVNFGASKIAVYGN---ATIEELEKAGAFENLK-VTP 76
Query: 95 QPKKDAGGGEKKSEEKSEKKPDDKK 119
+ E K + K +K P KK
Sbjct: 77 EKSARQASQEVKEDTKEDKVPFYKK 101
>sp|Q0Q462|NCAP_BC512 Nucleoprotein OS=Bat coronavirus 512/2005 GN=N PE=3 SV=1
Length = 394
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 152 KTKGVDNVTIDGGKDLVTVKGTMDVKE--LVPYLKEKLKRNVEVV 194
+T GV V IDG K T G E LVP K KL NVE+V
Sbjct: 93 RTDGVFWVAIDGAKTQPTGLGVRKSSEKPLVPKFKNKLPNNVEIV 137
>sp|Q59385|COPA_ECOLI Copper-exporting P-type ATPase A OS=Escherichia coli (strain K12)
GN=copA PE=1 SV=4
Length = 834
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 79/187 (42%), Gaps = 23/187 (12%)
Query: 28 TVVLKVD-LHCEGCAKKIKRAMKNYEGVVDV-KTDCGANKVTVTGKVEPAKLKERL-EAK 84
T+ L +D L C C K++K +++ DV + D + VTG +L E + +A
Sbjct: 4 TIDLTLDGLSCGHCVKRVKESLEQRP---DVEQADVSITEAHVTGTASAEQLIETIKQAG 60
Query: 85 TKKKVDLVSPQPKKDAGGGEKKSEEKSEKKP----DDKKSEEKKPPKESTVVLKIRLHCE 140
V +P ++ + SE P DD S++ +L + C
Sbjct: 61 YDASVSHPKAKPLAESSIPSEALTAVSEALPAATADDDDSQQ---------LLLSGMSCA 111
Query: 141 GCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPYLKEKLKRNVEVVPAKKDD 200
C+++++ + GV ++ + V G+ ++LV + EK E + +DD
Sbjct: 112 SCVTRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAV-EKAGYGAEAI---EDD 167
Query: 201 GEKKENK 207
+++E +
Sbjct: 168 AKRRERQ 174
>sp|Q8XD24|COPA_ECO57 Copper-exporting P-type ATPase A OS=Escherichia coli O157:H7
GN=copA PE=3 SV=3
Length = 834
Score = 31.2 bits (69), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 79/187 (42%), Gaps = 23/187 (12%)
Query: 28 TVVLKVD-LHCEGCAKKIKRAMKNYEGVVDV-KTDCGANKVTVTGKVEPAKLKERL-EAK 84
T+ L +D L C C K++K +++ DV + D + VTG +L E + +A
Sbjct: 4 TIDLTLDGLSCGHCVKRVKESLEQRP---DVEQADVSITEAHVTGTASAEQLIETIKQAG 60
Query: 85 TKKKVDLVSPQPKKDAGGGEKKSEEKSEKKP----DDKKSEEKKPPKESTVVLKIRLHCE 140
V +P ++ + SE P DD S++ +L + C
Sbjct: 61 YDASVSHPKAKPLAESSIPSEALTAVSEALPAATADDDDSQQ---------LLLSGMSCA 111
Query: 141 GCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPYLKEKLKRNVEVVPAKKDD 200
C+++++ + GV ++ + V G+ ++LV + EK E + +DD
Sbjct: 112 SCVTRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAV-EKAGYGAEAI---EDD 167
Query: 201 GEKKENK 207
+++E +
Sbjct: 168 AKRRERQ 174
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.130 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,587,717
Number of Sequences: 539616
Number of extensions: 6648477
Number of successful extensions: 42492
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 576
Number of HSP's that attempted gapping in prelim test: 34969
Number of HSP's gapped (non-prelim): 4920
length of query: 303
length of database: 191,569,459
effective HSP length: 117
effective length of query: 186
effective length of database: 128,434,387
effective search space: 23888795982
effective search space used: 23888795982
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 61 (28.1 bits)