Query 022030
Match_columns 303
No_of_seqs 350 out of 1996
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 07:29:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10671 copA copper exporting 99.2 1.9E-10 4.1E-15 119.8 17.1 159 27-194 3-164 (834)
2 PF00403 HMA: Heavy-metal-asso 99.2 1.3E-10 2.8E-15 81.7 7.7 58 132-190 1-62 (62)
3 KOG0207 Cation transport ATPas 99.2 6E-10 1.3E-14 112.4 14.6 141 25-195 67-215 (951)
4 KOG0207 Cation transport ATPas 99.1 1E-09 2.2E-14 110.8 12.7 131 35-196 3-139 (951)
5 PF00403 HMA: Heavy-metal-asso 99.1 6.9E-10 1.5E-14 78.0 8.1 57 30-86 1-61 (62)
6 KOG1603 Copper chaperone [Inor 99.1 8.5E-10 1.9E-14 80.3 8.5 67 128-194 4-70 (73)
7 KOG1603 Copper chaperone [Inor 98.9 4.5E-09 9.8E-14 76.5 7.7 66 25-90 3-68 (73)
8 COG2608 CopZ Copper chaperone 98.9 9.4E-09 2E-13 74.4 8.4 64 130-194 3-70 (71)
9 COG2608 CopZ Copper chaperone 98.9 8.5E-09 1.8E-13 74.7 7.6 61 27-87 2-66 (71)
10 KOG4656 Copper chaperone for s 98.6 1.7E-07 3.6E-12 79.7 7.7 69 25-94 5-73 (247)
11 KOG4656 Copper chaperone for s 98.4 7.3E-07 1.6E-11 75.8 8.0 69 130-199 8-76 (247)
12 PLN02957 copper, zinc superoxi 97.9 9.9E-05 2.1E-09 65.9 9.8 69 129-198 6-74 (238)
13 PRK10671 copA copper exporting 97.5 0.00018 3.9E-09 75.4 7.3 63 130-195 4-67 (834)
14 COG2217 ZntA Cation transport 97.5 0.00026 5.7E-09 72.3 7.2 62 130-193 3-69 (713)
15 PLN02957 copper, zinc superoxi 97.3 0.0012 2.6E-08 58.9 9.1 66 27-93 6-71 (238)
16 TIGR00003 copper ion binding p 97.0 0.0067 1.5E-07 40.2 8.3 59 130-189 3-65 (68)
17 COG2217 ZntA Cation transport 97.0 0.0017 3.7E-08 66.4 7.2 59 28-87 3-66 (713)
18 TIGR00003 copper ion binding p 96.7 0.023 5E-07 37.5 8.8 55 28-82 3-61 (68)
19 PRK11033 zntA zinc/cadmium/mer 94.8 0.11 2.4E-06 53.9 8.5 65 128-193 52-118 (741)
20 PRK11033 zntA zinc/cadmium/mer 92.4 0.37 8.1E-06 50.1 7.3 61 26-86 52-114 (741)
21 TIGR02052 MerP mercuric transp 86.5 8.6 0.00019 27.3 8.9 62 130-192 24-89 (92)
22 TIGR02052 MerP mercuric transp 71.3 20 0.00043 25.3 6.5 42 28-69 24-66 (92)
23 PRK13748 putative mercuric red 70.7 22 0.00048 35.5 8.7 64 132-196 3-69 (561)
24 PF02680 DUF211: Uncharacteriz 69.4 15 0.00034 27.8 5.4 65 129-195 5-78 (95)
25 COG1888 Uncharacterized protei 69.1 18 0.0004 27.1 5.6 50 145-195 23-80 (97)
26 COG1888 Uncharacterized protei 65.3 44 0.00094 25.2 6.9 61 26-86 5-74 (97)
27 cd00371 HMA Heavy-metal-associ 64.9 24 0.00053 20.2 7.4 49 136-184 6-56 (63)
28 COG2177 FtsX Cell division pro 62.1 62 0.0013 29.9 9.1 90 28-162 62-152 (297)
29 PRK10553 assembly protein for 60.2 69 0.0015 23.9 7.6 29 41-69 19-47 (87)
30 cd00371 HMA Heavy-metal-associ 60.2 31 0.00066 19.8 5.7 37 33-69 4-41 (63)
31 PF01883 DUF59: Domain of unkn 58.0 17 0.00037 25.5 3.8 32 28-59 35-72 (72)
32 PF01883 DUF59: Domain of unkn 48.5 27 0.00059 24.4 3.5 33 129-161 34-72 (72)
33 PF01206 TusA: Sulfurtransfera 47.3 49 0.0011 22.9 4.7 53 132-194 2-57 (70)
34 PF03927 NapD: NapD protein; 42.9 1.3E+02 0.0028 21.8 7.7 28 41-69 17-44 (79)
35 PRK13748 putative mercuric red 42.6 60 0.0013 32.4 6.2 40 30-69 3-43 (561)
36 PF02680 DUF211: Uncharacteriz 40.8 59 0.0013 24.7 4.3 60 26-86 4-72 (95)
37 COG0841 AcrB Cation/multidrug 40.0 4.3E+02 0.0094 28.9 12.3 123 40-185 62-208 (1009)
38 PRK10553 assembly protein for 37.6 1.3E+02 0.0028 22.4 5.8 44 141-184 17-61 (87)
39 PF03927 NapD: NapD protein; 37.1 1.6E+02 0.0035 21.3 6.3 42 142-184 16-58 (79)
40 TIGR02945 SUF_assoc FeS assemb 36.3 97 0.0021 23.1 5.1 40 144-188 58-97 (99)
41 TIGR03406 FeS_long_SufT probab 32.4 1E+02 0.0022 26.1 5.1 54 130-188 114-173 (174)
42 PF06495 Transformer: Fruit fl 31.6 90 0.002 26.4 4.4 13 261-273 141-153 (182)
43 PRK11023 outer membrane lipopr 31.5 3.3E+02 0.0071 23.2 11.0 110 35-179 45-167 (191)
44 PF08712 Nfu_N: Scaffold prote 30.9 1.9E+02 0.004 21.4 5.7 42 144-187 37-80 (87)
45 PRK11018 hypothetical protein; 29.6 2.1E+02 0.0046 20.5 5.8 55 130-194 8-65 (78)
46 TIGR03406 FeS_long_SufT probab 29.2 75 0.0016 26.9 3.7 33 29-61 115-153 (174)
47 PRK06418 transcription elongat 28.1 1.8E+02 0.004 24.4 5.8 65 132-196 9-98 (166)
48 PF14437 MafB19-deam: MafB19-l 27.3 1.4E+02 0.0031 24.6 4.9 41 26-67 99-141 (146)
49 PRK14054 methionine sulfoxide 27.2 1.2E+02 0.0027 25.6 4.7 27 141-167 11-37 (172)
50 PRK09577 multidrug efflux prot 26.9 8.5E+02 0.018 26.6 12.1 43 143-185 158-208 (1032)
51 cd03421 SirA_like_N SirA_like_ 26.2 1.6E+02 0.0035 20.1 4.5 51 133-194 2-55 (67)
52 cd04888 ACT_PheB-BS C-terminal 25.8 1.6E+02 0.0034 20.2 4.5 32 130-161 42-74 (76)
53 PRK11026 ftsX cell division AB 25.2 3.6E+02 0.0079 24.9 7.9 82 40-163 80-165 (309)
54 PF09580 Spore_YhcN_YlaJ: Spor 24.3 1.8E+02 0.0039 24.1 5.3 33 139-171 73-105 (177)
55 PRK14054 methionine sulfoxide 24.0 1.4E+02 0.0031 25.2 4.5 28 38-65 10-37 (172)
56 PRK10555 aminoglycoside/multid 23.5 1E+03 0.022 26.1 13.0 43 143-185 159-209 (1037)
57 PF05663 DUF809: Protein of un 23.1 1.5E+02 0.0032 22.6 3.9 43 141-184 48-90 (138)
58 PRK10503 multidrug efflux syst 22.3 1E+03 0.022 26.1 11.7 42 144-185 169-219 (1040)
59 PF04972 BON: BON domain; Int 22.1 77 0.0017 21.3 2.1 33 145-178 3-38 (64)
60 PF04468 PSP1: PSP1 C-terminal 21.1 3.2E+02 0.007 20.1 5.5 52 141-193 30-85 (88)
61 PF13291 ACT_4: ACT domain; PD 20.8 2.3E+02 0.0049 19.9 4.5 32 129-160 48-79 (80)
62 PF14437 MafB19-deam: MafB19-l 20.7 2.3E+02 0.0049 23.4 4.8 41 128-169 99-141 (146)
63 PF08777 RRM_3: RNA binding mo 20.4 4E+02 0.0086 20.3 6.0 56 131-186 2-60 (105)
No 1
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.25 E-value=1.9e-10 Score=119.84 Aligned_cols=159 Identities=18% Similarity=0.335 Sum_probs=112.0
Q ss_pred eEEEEEEE-eeCHhhHHHHHHHHhcCCCceEEEEEcCCCEEEEeecCChHHHHHHHHhcccCcccccCCCCCCCCCCCCC
Q 022030 27 VTVVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKERLEAKTKKKVDLVSPQPKKDAGGGEK 105 (303)
Q Consensus 27 ~~~~l~v~-m~C~~Ca~kI~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~~~~~~~l~s~~~~~~~~~~~~ 105 (303)
.+++|.|+ |+|.+|+.+|+++|++++||..+.+++. +.+|....+.+.+...|++.+| .+.+.++..........
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~~~Gy-~~~~~~~~~~~~~~~~~- 78 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIKQAGY-DASVSHPKAKPLTESSI- 78 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHHhcCC-ccccccccccccccccc-
Confidence 56889999 9999999999999999999999999984 5566666788999999985554 55554321111000000
Q ss_pred cccccccCCCCCCCccc-CCCCCcceEEEEE-eeechhhHHHHHHHHhccCCeeeEEeeCCCCeEEEEecCCHHHHHHHH
Q 022030 106 KSEEKSEKKPDDKKSEE-KKPPKESTVVLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPYL 183 (303)
Q Consensus 106 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~V-gm~C~~C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~g~~d~~~l~~~l 183 (303)
..+.... .++... .......++.+.| ||+|..|+..|++.+..++||.++.+++.++++.|.+..+...+...+
T Consensus 79 --~~~~~~~--~~~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I 154 (834)
T PRK10671 79 --PSEALTA--ASEELPAATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAV 154 (834)
T ss_pred --Cchhhhh--hhhhccccccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHH
Confidence 0000000 000000 0001123577889 999999999999999999999999999999998887667778888888
Q ss_pred HHhcCCcEEEc
Q 022030 184 KEKLKRNVEVV 194 (303)
Q Consensus 184 ~~k~g~~a~~v 194 (303)
. .+|+.+.++
T Consensus 155 ~-~~Gy~a~~~ 164 (834)
T PRK10671 155 E-KAGYGAEAI 164 (834)
T ss_pred H-hcCCCcccc
Confidence 7 788876543
No 2
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.17 E-value=1.3e-10 Score=81.69 Aligned_cols=58 Identities=28% Similarity=0.513 Sum_probs=52.6
Q ss_pred EEEE-eeechhhHHHHHHHHhccCCeeeEEeeCCCCeEEEEec---CCHHHHHHHHHHhcCCc
Q 022030 132 VLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGT---MDVKELVPYLKEKLKRN 190 (303)
Q Consensus 132 ~l~V-gm~C~~C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~g~---~d~~~l~~~l~~k~g~~ 190 (303)
+|.| ||+|.+|+.+|+++|.+++||.++.+|+.+++++|.+. +++++|.+.|+ ++||.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~-~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE-KAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH-HTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH-HhCcC
Confidence 5789 99999999999999999999999999999999999976 45599999999 78863
No 3
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.16 E-value=6e-10 Score=112.41 Aligned_cols=141 Identities=21% Similarity=0.397 Sum_probs=116.5
Q ss_pred CceEEEEEEE-eeCHhhHHHHHHHHhcCCCceEEEEEcCCCEEEEee---cCChHHHHHHHHhcccCcccccCCCCCCCC
Q 022030 25 GVVTVVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTG---KVEPAKLKERLEAKTKKKVDLVSPQPKKDA 100 (303)
Q Consensus 25 ~~~~~~l~v~-m~C~~Ca~kI~~~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~~~~~~~l~s~~~~~~~ 100 (303)
...+..|++. |+|.+|++.|++.|+.+.||.++.+.+...+..+.. ..+++.+.+.|+ ..++.+.++....
T Consensus 67 ~~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie-~~gf~a~~i~~~~---- 141 (951)
T KOG0207|consen 67 TASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIE-DLGFSAELIESVN---- 141 (951)
T ss_pred ccceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHH-hcCccceehhccc----
Confidence 3446789999 999999999999999999999999999999999873 367889999999 4555555443211
Q ss_pred CCCCCcccccccCCCCCCCcccCCCCCcceEEEEE-eeechhhHHHHHHHHhccCCeeeEEeeCCCCeEEEEe---cCCH
Q 022030 101 GGGEKKSEEKSEKKPDDKKSEEKKPPKESTVVLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKG---TMDV 176 (303)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V-gm~C~~C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~g---~~d~ 176 (303)
.....++.|.| ||+|.+|+.+|++.|.+++||.++++++.++++.|.. ...+
T Consensus 142 ------------------------~~~~~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~p 197 (951)
T KOG0207|consen 142 ------------------------GNSNQKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGP 197 (951)
T ss_pred ------------------------CCCCCcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccCh
Confidence 01115789999 9999999999999999999999999999999999973 4788
Q ss_pred HHHHHHHHHhcCCcEEEcc
Q 022030 177 KELVPYLKEKLKRNVEVVP 195 (303)
Q Consensus 177 ~~l~~~l~~k~g~~a~~v~ 195 (303)
.++++.|. .+++.+.+.+
T Consensus 198 r~i~k~ie-~~~~~~~~~~ 215 (951)
T KOG0207|consen 198 RDIIKAIE-ETGFEASVRP 215 (951)
T ss_pred HHHHHHHH-hhcccceeee
Confidence 99999999 7777766654
No 4
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.08 E-value=1e-09 Score=110.79 Aligned_cols=131 Identities=19% Similarity=0.398 Sum_probs=112.6
Q ss_pred eeCHhhHHHHHHHHhcCCCceEEEEEcCCCEEEEee--cCChHHHHHHHHhcccCcccccCCCCCCCCCCCCCccccccc
Q 022030 35 LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTG--KVEPAKLKERLEAKTKKKVDLVSPQPKKDAGGGEKKSEEKSE 112 (303)
Q Consensus 35 m~C~~Ca~kI~~~L~~~~GV~~v~vd~~~~~v~V~~--~~~~~~i~~~i~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~ 112 (303)
|+|..|++.|+.++++.+||.++.+++.+++.+|.. ..+++.|.+.|+. .++.+.+++...
T Consensus 3 mtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ied-~gf~~~~~~~~~---------------- 65 (951)
T KOG0207|consen 3 MTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIED-MGFEASLLSDSE---------------- 65 (951)
T ss_pred ccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhhc-ccceeeecccCc----------------
Confidence 899999999999999999999999999999998874 5789999999994 555665554321
Q ss_pred CCCCCCCcccCCCCCcceEEEEE-eeechhhHHHHHHHHhccCCeeeEEeeCCCCeEEEE---ecCCHHHHHHHHHHhcC
Q 022030 113 KKPDDKKSEEKKPPKESTVVLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVK---GTMDVKELVPYLKEKLK 188 (303)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~V-gm~C~~C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~---g~~d~~~l~~~l~~k~g 188 (303)
....+-.|.| ||+|.+|++.|++.|+++.||.++.+.+......|. ....++.+.+.+. ++|
T Consensus 66 -------------~~~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie-~~g 131 (951)
T KOG0207|consen 66 -------------ITASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIE-DLG 131 (951)
T ss_pred -------------cccceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHH-hcC
Confidence 2334678999 999999999999999999999999999999999987 2478899999999 899
Q ss_pred CcEEEccC
Q 022030 189 RNVEVVPA 196 (303)
Q Consensus 189 ~~a~~v~~ 196 (303)
+.+.++.-
T Consensus 132 f~a~~i~~ 139 (951)
T KOG0207|consen 132 FSAELIES 139 (951)
T ss_pred ccceehhc
Confidence 99988754
No 5
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.08 E-value=6.9e-10 Score=77.96 Aligned_cols=57 Identities=39% Similarity=0.582 Sum_probs=51.3
Q ss_pred EEEEE-eeCHhhHHHHHHHHhcCCCceEEEEEcCCCEEEEeec---CChHHHHHHHHhccc
Q 022030 30 VLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGK---VEPAKLKERLEAKTK 86 (303)
Q Consensus 30 ~l~v~-m~C~~Ca~kI~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~~~ 86 (303)
+|+|. |+|++|+++|+++|.+++||.++.+|+.+++++|.+. .++++|..+|++.+|
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy 61 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGY 61 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTS
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCc
Confidence 58898 9999999999999999999999999999999999965 456899999996554
No 6
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.07 E-value=8.5e-10 Score=80.34 Aligned_cols=67 Identities=45% Similarity=0.684 Sum_probs=60.6
Q ss_pred cceEEEEEeeechhhHHHHHHHHhccCCeeeEEeeCCCCeEEEEecCCHHHHHHHHHHhcCCcEEEc
Q 022030 128 ESTVVLKIRLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPYLKEKLKRNVEVV 194 (303)
Q Consensus 128 ~~~~~l~Vgm~C~~C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~g~~d~~~l~~~l~~k~g~~a~~v 194 (303)
....++++.|+|.+|..+|.+.|..+.||.++.+|...++++|.|.+++..|+..|++..+..+.++
T Consensus 4 ~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~~ 70 (73)
T KOG1603|consen 4 IKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAELW 70 (73)
T ss_pred ccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEEe
Confidence 3467888999999999999999999999999999999999999999999999999996554777665
No 7
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.93 E-value=4.5e-09 Score=76.52 Aligned_cols=66 Identities=45% Similarity=0.800 Sum_probs=58.6
Q ss_pred CceEEEEEEEeeCHhhHHHHHHHHhcCCCceEEEEEcCCCEEEEeecCChHHHHHHHHhcccCccc
Q 022030 25 GVVTVVLKVDLHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKERLEAKTKKKVD 90 (303)
Q Consensus 25 ~~~~~~l~v~m~C~~Ca~kI~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~~~~~~~ 90 (303)
.++..++++.|||.+|..+|++.|+.+.||.++.+|...++++|.+.+++..|+..|.+.+.+.+.
T Consensus 3 ~~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~ 68 (73)
T KOG1603|consen 3 PIKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAE 68 (73)
T ss_pred CccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceE
Confidence 456788999999999999999999999999999999999999999999999999999965434433
No 8
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.90 E-value=9.4e-09 Score=74.41 Aligned_cols=64 Identities=23% Similarity=0.485 Sum_probs=57.1
Q ss_pred eEEEEE-eeechhhHHHHHHHHhccCCeeeEEeeCCCCeEEEE--e-cCCHHHHHHHHHHhcCCcEEEc
Q 022030 130 TVVLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVK--G-TMDVKELVPYLKEKLKRNVEVV 194 (303)
Q Consensus 130 ~~~l~V-gm~C~~C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~--g-~~d~~~l~~~l~~k~g~~a~~v 194 (303)
+..|+| ||+|.+|+.+|+++|.++.||.++.+++..++++|+ + .++.+.|+.+|. .+||.+..+
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~-~aGy~~~~~ 70 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIE-DAGYKVEEI 70 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHH-HcCCCeeec
Confidence 568999 999999999999999999999999999999777776 4 489999999999 899887653
No 9
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.88 E-value=8.5e-09 Score=74.65 Aligned_cols=61 Identities=31% Similarity=0.543 Sum_probs=53.9
Q ss_pred eEEEEEEE-eeCHhhHHHHHHHHhcCCCceEEEEEcCCCEEEEe--e-cCChHHHHHHHHhcccC
Q 022030 27 VTVVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVT--G-KVEPAKLKERLEAKTKK 87 (303)
Q Consensus 27 ~~~~l~v~-m~C~~Ca~kI~~~L~~~~GV~~v~vd~~~~~v~V~--~-~~~~~~i~~~i~~~~~~ 87 (303)
....|+|+ |+|.+|+.+|+++|..++||.++.+++..+++.|. + .++.++|+++|.+.+|.
T Consensus 2 ~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~ 66 (71)
T COG2608 2 MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYK 66 (71)
T ss_pred ceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCC
Confidence 45789999 99999999999999999999999999999777765 3 47899999999977764
No 10
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.59 E-value=1.7e-07 Score=79.69 Aligned_cols=69 Identities=25% Similarity=0.461 Sum_probs=62.4
Q ss_pred CceEEEEEEEeeCHhhHHHHHHHHhcCCCceEEEEEcCCCEEEEeecCChHHHHHHHHhcccCcccccCC
Q 022030 25 GVVTVVLKVDLHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKERLEAKTKKKVDLVSP 94 (303)
Q Consensus 25 ~~~~~~l~v~m~C~~Ca~kI~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~~~~~~~l~s~ 94 (303)
...+++|.|.|+|.+|++.|+..|..++||.++.+|+..+.|.|.+...+.+|.+.|+ .+++.+.|...
T Consensus 5 ~~~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le-~tGr~Avl~G~ 73 (247)
T KOG4656|consen 5 DTYEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLE-NTGRDAVLRGA 73 (247)
T ss_pred CceeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHH-hhChheEEecC
Confidence 4466889999999999999999999999999999999999999999999999999999 67777777654
No 11
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.45 E-value=7.3e-07 Score=75.83 Aligned_cols=69 Identities=20% Similarity=0.421 Sum_probs=63.6
Q ss_pred eEEEEEeeechhhHHHHHHHHhccCCeeeEEeeCCCCeEEEEecCCHHHHHHHHHHhcCCcEEEccCCCC
Q 022030 130 TVVLKIRLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPYLKEKLKRNVEVVPAKKD 199 (303)
Q Consensus 130 ~~~l~Vgm~C~~C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~g~~d~~~l~~~l~~k~g~~a~~v~~~~~ 199 (303)
++.|.|.|+|.+|++.|+..|..++||.+++||+..+.|.|.+..-+..|...|+ .+|++|.+....+.
T Consensus 8 ~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le-~tGr~Avl~G~G~p 76 (247)
T KOG4656|consen 8 EAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLE-NTGRDAVLRGAGKP 76 (247)
T ss_pred eEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHH-hhChheEEecCCch
Confidence 5678889999999999999999999999999999999999999999999999999 99999999765433
No 12
>PLN02957 copper, zinc superoxide dismutase
Probab=97.87 E-value=9.9e-05 Score=65.95 Aligned_cols=69 Identities=23% Similarity=0.461 Sum_probs=61.2
Q ss_pred ceEEEEEeeechhhHHHHHHHHhccCCeeeEEeeCCCCeEEEEecCCHHHHHHHHHHhcCCcEEEccCCC
Q 022030 129 STVVLKIRLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPYLKEKLKRNVEVVPAKK 198 (303)
Q Consensus 129 ~~~~l~Vgm~C~~C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~g~~d~~~l~~~l~~k~g~~a~~v~~~~ 198 (303)
.++.|.++|+|..|+.+|++.|..++||.++.+++..++++|....+...|+..|. .+++.+++++...
T Consensus 6 ~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe-~~Gy~a~~~~~~~ 74 (238)
T PLN02957 6 LLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALE-QTGRKARLIGQGD 74 (238)
T ss_pred EEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHH-HcCCcEEEecCCC
Confidence 46677889999999999999999999999999999999999987778888999998 8999998876533
No 13
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.54 E-value=0.00018 Score=75.44 Aligned_cols=63 Identities=21% Similarity=0.389 Sum_probs=56.5
Q ss_pred eEEEEE-eeechhhHHHHHHHHhccCCeeeEEeeCCCCeEEEEecCCHHHHHHHHHHhcCCcEEEcc
Q 022030 130 TVVLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPYLKEKLKRNVEVVP 195 (303)
Q Consensus 130 ~~~l~V-gm~C~~C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~g~~d~~~l~~~l~~k~g~~a~~v~ 195 (303)
+++|.| ||+|.+|+.+|+++|.+++||.++.+++. +.+|++..+.+.+...|. .+||.+.+..
T Consensus 4 ~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~-~~Gy~~~~~~ 67 (834)
T PRK10671 4 TIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIK-QAGYDASVSH 67 (834)
T ss_pred EEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHH-hcCCcccccc
Confidence 578999 99999999999999999999999999994 566777788899999999 9999998864
No 14
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.47 E-value=0.00026 Score=72.28 Aligned_cols=62 Identities=21% Similarity=0.401 Sum_probs=55.0
Q ss_pred eEEEEE-eeechhhHHHHHHHHhccCCeeeEEeeCCCCeEEEEe---cCC-HHHHHHHHHHhcCCcEEE
Q 022030 130 TVVLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKG---TMD-VKELVPYLKEKLKRNVEV 193 (303)
Q Consensus 130 ~~~l~V-gm~C~~C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~g---~~d-~~~l~~~l~~k~g~~a~~ 193 (303)
+..|.| ||+|+.|+.+|+ .|.+++||.++.+|+.+++++|.. ..+ .+.+...++ ..||.+..
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~-~~gy~~~~ 69 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVE-KAGYSARL 69 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHH-hcCccccc
Confidence 467899 999999999999 999999999999999999999974 345 688888888 88987766
No 15
>PLN02957 copper, zinc superoxide dismutase
Probab=97.34 E-value=0.0012 Score=58.95 Aligned_cols=66 Identities=29% Similarity=0.517 Sum_probs=54.7
Q ss_pred eEEEEEEEeeCHhhHHHHHHHHhcCCCceEEEEEcCCCEEEEeecCChHHHHHHHHhcccCcccccC
Q 022030 27 VTVVLKVDLHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKERLEAKTKKKVDLVS 93 (303)
Q Consensus 27 ~~~~l~v~m~C~~Ca~kI~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~~~~~~~l~s 93 (303)
..+.|.+.|+|..|+.+|++.|.+++||..+.+++..++++|....+...|...|+..++ .+.+++
T Consensus 6 ~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~~Gy-~a~~~~ 71 (238)
T PLN02957 6 LLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGR-KARLIG 71 (238)
T ss_pred EEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHHcCC-cEEEec
Confidence 345677789999999999999999999999999999999999876778888888885444 455544
No 16
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.02 E-value=0.0067 Score=40.15 Aligned_cols=59 Identities=19% Similarity=0.312 Sum_probs=47.6
Q ss_pred eEEEEE-eeechhhHHHHHHHHhccCCeeeEEeeCCCCeEEEEe---cCCHHHHHHHHHHhcCC
Q 022030 130 TVVLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKG---TMDVKELVPYLKEKLKR 189 (303)
Q Consensus 130 ~~~l~V-gm~C~~C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~g---~~d~~~l~~~l~~k~g~ 189 (303)
+..+.| +|+|..|+..|++.+....++..+.+++....+.|.. ..+...+...+. ..++
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~ 65 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAIL-DAGY 65 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHH-HcCC
Confidence 346888 9999999999999999999999999999999988873 245666666665 5554
No 17
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.0017 Score=66.44 Aligned_cols=59 Identities=25% Similarity=0.520 Sum_probs=51.1
Q ss_pred EEEEEEE-eeCHhhHHHHHHHHhcCCCceEEEEEcCCCEEEEeec---CC-hHHHHHHHHhcccC
Q 022030 28 TVVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGK---VE-PAKLKERLEAKTKK 87 (303)
Q Consensus 28 ~~~l~v~-m~C~~Ca~kI~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~-~~~i~~~i~~~~~~ 87 (303)
+..|.|. |+|..|+.+|+ +|.+++||..+.+|+.+.++.|..+ .+ .+.+...++..+|.
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~ 66 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYS 66 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCcc
Confidence 4679999 99999999999 9999999999999999999999843 34 67888888866663
No 18
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=96.68 E-value=0.023 Score=37.45 Aligned_cols=55 Identities=22% Similarity=0.368 Sum_probs=44.7
Q ss_pred EEEEEEE-eeCHhhHHHHHHHHhcCCCceEEEEEcCCCEEEEee---cCChHHHHHHHH
Q 022030 28 TVVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTG---KVEPAKLKERLE 82 (303)
Q Consensus 28 ~~~l~v~-m~C~~Ca~kI~~~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~ 82 (303)
+..+.|. ++|..|+..|+..+....++..+.+++....+.+.. ..+...+...+.
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAIL 61 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 4568899 999999999999999999999999999999988864 235555555554
No 19
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=94.82 E-value=0.11 Score=53.94 Aligned_cols=65 Identities=14% Similarity=0.242 Sum_probs=51.1
Q ss_pred cceEEEEE-eeechhhHHHHHHHHhccCCeeeEEeeCCCCeEEEEecC-CHHHHHHHHHHhcCCcEEE
Q 022030 128 ESTVVLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGTM-DVKELVPYLKEKLKRNVEV 193 (303)
Q Consensus 128 ~~~~~l~V-gm~C~~C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~g~~-d~~~l~~~l~~k~g~~a~~ 193 (303)
..++.+.| +|+|.+|+.+|++.+..++||.++.+++.+.++.|.... ....+...+. ..|+.+..
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~-~~Gy~a~~ 118 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQ-KAGFSLRD 118 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHH-hccccccc
Confidence 44677889 999999999999999999999999999999998876321 1255556666 67776543
No 20
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=92.38 E-value=0.37 Score=50.12 Aligned_cols=61 Identities=21% Similarity=0.364 Sum_probs=46.9
Q ss_pred ceEEEEEEE-eeCHhhHHHHHHHHhcCCCceEEEEEcCCCEEEEeecC-ChHHHHHHHHhccc
Q 022030 26 VVTVVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKV-EPAKLKERLEAKTK 86 (303)
Q Consensus 26 ~~~~~l~v~-m~C~~Ca~kI~~~L~~~~GV~~v~vd~~~~~v~V~~~~-~~~~i~~~i~~~~~ 86 (303)
..+..+.+. |+|.+|+..|++.+..++||..+.+++.+.++.+.... ....+...+...++
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~~Gy 114 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQKAGF 114 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHHhccc
Confidence 345678899 99999999999999999999999999999998876321 12455555553333
No 21
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=86.51 E-value=8.6 Score=27.29 Aligned_cols=62 Identities=21% Similarity=0.300 Sum_probs=44.5
Q ss_pred eEEEEE-eeechhhHHHHHHHHhccCCeeeEEeeCCCCeEEEEe---cCCHHHHHHHHHHhcCCcEE
Q 022030 130 TVVLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKG---TMDVKELVPYLKEKLKRNVE 192 (303)
Q Consensus 130 ~~~l~V-gm~C~~C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~g---~~d~~~l~~~l~~k~g~~a~ 192 (303)
++.+.+ ++.|..|...++..+....++....+++....+.+.. ..+...+...+. ..++.++
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~ 89 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATT-DAGYPSS 89 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-hcCCCeE
Confidence 445667 9999999999999999999998888888777765542 234455545554 4555543
No 22
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=71.35 E-value=20 Score=25.32 Aligned_cols=42 Identities=26% Similarity=0.506 Sum_probs=34.4
Q ss_pred EEEEEEE-eeCHhhHHHHHHHHhcCCCceEEEEEcCCCEEEEe
Q 022030 28 TVVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVT 69 (303)
Q Consensus 28 ~~~l~v~-m~C~~Ca~kI~~~L~~~~GV~~v~vd~~~~~v~V~ 69 (303)
++.+.+. ++|..|...++..+....++....++.....+.+.
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVT 66 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEE
Confidence 3456678 99999999999999999998888888777775554
No 23
>PRK13748 putative mercuric reductase; Provisional
Probab=70.75 E-value=22 Score=35.46 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=48.3
Q ss_pred EEEE-eeechhhHHHHHHHHhccCCeeeEEeeCCCCeEEEEe--cCCHHHHHHHHHHhcCCcEEEccC
Q 022030 132 VLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKG--TMDVKELVPYLKEKLKRNVEVVPA 196 (303)
Q Consensus 132 ~l~V-gm~C~~C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~g--~~d~~~l~~~l~~k~g~~a~~v~~ 196 (303)
.+.+ +|+|..|..+++..+..++++....+++....+.+.. ..+...+...+. ..++.++....
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~-~~g~~~~~~~~ 69 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVA-GLGYRATLADA 69 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHH-HcCCeeeccCc
Confidence 4567 9999999999999999999999999999888877663 234555656665 56666655443
No 24
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=69.40 E-value=15 Score=27.80 Aligned_cols=65 Identities=23% Similarity=0.423 Sum_probs=41.2
Q ss_pred ceEEEEE-eeechhhHHHHHHHHhccCCeeeEEe-----eCCCCeEEE--Eec-CCHHHHHHHHHHhcCCcEEEcc
Q 022030 129 STVVLKI-RLHCEGCISKIKKIIYKTKGVDNVTI-----DGGKDLVTV--KGT-MDVKELVPYLKEKLKRNVEVVP 195 (303)
Q Consensus 129 ~~~~l~V-gm~C~~C~~kI~k~l~~~~GV~~v~v-----d~~~~~v~V--~g~-~d~~~l~~~l~~k~g~~a~~v~ 195 (303)
++++|.| --+-. -.-.+-+.|.++.||..+.+ |..+..+.| .|. +|.+.|.+.|. .+|..++.+.
T Consensus 5 rRlVLDVlKP~~p-~i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie-~~Gg~IHSID 78 (95)
T PF02680_consen 5 RRLVLDVLKPHEP-SIVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIE-ELGGVIHSID 78 (95)
T ss_dssp EEEEEEEEEESSS--HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHH-HTT-EEEEEE
T ss_pred eEEEEEeecCCCC-CHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHH-HcCCeEEeee
Confidence 3556665 22222 34456678999999887764 444554444 475 99999999999 7887887763
No 25
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=69.07 E-value=18 Score=27.13 Aligned_cols=50 Identities=24% Similarity=0.432 Sum_probs=34.8
Q ss_pred HHHHHHhccCCeeeEE-----eeCCCCe--EEEEec-CCHHHHHHHHHHhcCCcEEEcc
Q 022030 145 KIKKIIYKTKGVDNVT-----IDGGKDL--VTVKGT-MDVKELVPYLKEKLKRNVEVVP 195 (303)
Q Consensus 145 kI~k~l~~~~GV~~v~-----vd~~~~~--v~V~g~-~d~~~l~~~l~~k~g~~a~~v~ 195 (303)
-+-+.|.++.||.-|. +|..+.. +||.|+ +|.++|.+.|. .+|-.++.+.
T Consensus 23 e~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE-~~Gg~IHSiD 80 (97)
T COG1888 23 ELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIE-ELGGAIHSID 80 (97)
T ss_pred HHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHH-HcCCeeeehh
Confidence 3446678888877655 3444444 445575 99999999999 7887887764
No 26
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=65.30 E-value=44 Score=25.17 Aligned_cols=61 Identities=21% Similarity=0.289 Sum_probs=38.2
Q ss_pred ceEEEEEEE-eeCHhhHHHHHHHHhcCCCceEEEEE-----cCC--CEEEEee-cCChHHHHHHHHhccc
Q 022030 26 VVTVVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTD-----CGA--NKVTVTG-KVEPAKLKERLEAKTK 86 (303)
Q Consensus 26 ~~~~~l~v~-m~C~~Ca~kI~~~L~~~~GV~~v~vd-----~~~--~~v~V~~-~~~~~~i~~~i~~~~~ 86 (303)
...++|.+. -+-.--.--+.+.|++++||..|.+. ..+ -+++|.| .++.++|.+.|++.++
T Consensus 5 iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg 74 (97)
T COG1888 5 IRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGG 74 (97)
T ss_pred ceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCC
Confidence 344555555 33233334566778888888765543 233 3345555 5899999999996665
No 27
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=64.94 E-value=24 Score=20.24 Aligned_cols=49 Identities=33% Similarity=0.556 Sum_probs=34.9
Q ss_pred eeechhhHHHHHHHHhccCCeeeEEeeCCCCeEEEEec--CCHHHHHHHHH
Q 022030 136 RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGT--MDVKELVPYLK 184 (303)
Q Consensus 136 gm~C~~C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~g~--~d~~~l~~~l~ 184 (303)
++.|..|...+...+....++....+++....+.+... .+...+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (63)
T cd00371 6 GMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIE 56 (63)
T ss_pred CeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHHH
Confidence 78999999999999989999888777777666555432 24444433333
No 28
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=62.08 E-value=62 Score=29.91 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=57.3
Q ss_pred EEEEEEEeeCHhhHHHHHHHHhcCCCceEEEEEcCCCEEEEeecCChHHHHHHHHhcccCc-ccccCCCCCCCCCCCCCc
Q 022030 28 TVVLKVDLHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKERLEAKTKKK-VDLVSPQPKKDAGGGEKK 106 (303)
Q Consensus 28 ~~~l~v~m~C~~Ca~kI~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~~~~~-~~l~s~~~~~~~~~~~~~ 106 (303)
++.|.++.+ ..|...++..|.+++||.++++ .+.++-.+.+....+.. ....+.
T Consensus 62 ~vyL~~~~~-~~~~~~v~~~i~~~~gV~~v~~------------~sre~~l~~L~~~lg~~~~~~l~~------------ 116 (297)
T COG2177 62 TVYLQIDAD-QDDAALVREKIEGIPGVKSVRF------------ISREEALKELQPWLGFGALLMLDE------------ 116 (297)
T ss_pred EEEEecCCC-hHHHHHHHHHHhcCCCcceEEE------------eCHHHHHHHHHHHcCchhhhcCCC------------
Confidence 344444444 8899999999999999998876 45566566665444432 111111
Q ss_pred ccccccCCCCCCCcccCCCCCcceEEEEEeeechhhHHHHHHHHhccCCeeeEEee
Q 022030 107 SEEKSEKKPDDKKSEEKKPPKESTVVLKIRLHCEGCISKIKKIIYKTKGVDNVTID 162 (303)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~Vgm~C~~C~~kI~k~l~~~~GV~~v~vd 162 (303)
.|-...+++++ +-..-...+.+.|..++||.+|..+
T Consensus 117 ------------------nPLP~~~vV~~--~~p~~~~~i~~~l~~l~gV~~V~~~ 152 (297)
T COG2177 117 ------------------NPLPDVFVVTP--DDPPQVKAIAAALRDLPGVAEVDDD 152 (297)
T ss_pred ------------------CCCCceEEEEe--CCCccHHHHHHHHHcCccceehhcc
Confidence 12233344444 2266677888999999999987754
No 29
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=60.19 E-value=69 Score=23.87 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=18.2
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCEEEEe
Q 022030 41 AKKIKRAMKNYEGVVDVKTDCGANKVTVT 69 (303)
Q Consensus 41 a~kI~~~L~~~~GV~~v~vd~~~~~v~V~ 69 (303)
...+...|..++|++-...+...+++.|+
T Consensus 19 ~~~V~~~l~~ipg~Evh~~d~~~GKiVVt 47 (87)
T PRK10553 19 ISDISTQLNAFPGCEVAVSDAPSGQLIVV 47 (87)
T ss_pred HHHHHHHHHcCCCcEEEeecCCCCeEEEE
Confidence 45667777777777644444555666655
No 30
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=60.15 E-value=31 Score=19.76 Aligned_cols=37 Identities=38% Similarity=0.738 Sum_probs=29.0
Q ss_pred EE-eeCHhhHHHHHHHHhcCCCceEEEEEcCCCEEEEe
Q 022030 33 VD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVT 69 (303)
Q Consensus 33 v~-m~C~~Ca~kI~~~L~~~~GV~~v~vd~~~~~v~V~ 69 (303)
+. +.|..|...+...+....++.....++....+.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (63)
T cd00371 4 VEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVE 41 (63)
T ss_pred ECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEE
Confidence 45 88999999999888888888777777666665554
No 31
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=57.99 E-value=17 Score=25.53 Aligned_cols=32 Identities=31% Similarity=0.580 Sum_probs=21.5
Q ss_pred EEEEEEEeeCHhhH------HHHHHHHhcCCCceEEEE
Q 022030 28 TVVLKVDLHCEGCA------KKIKRAMKNYEGVVDVKT 59 (303)
Q Consensus 28 ~~~l~v~m~C~~Ca------~kI~~~L~~~~GV~~v~v 59 (303)
++.|.+.+...+|. ..|+.+|..++||.+++|
T Consensus 35 ~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 35 KVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 35566666666665 668889999999988865
No 32
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=48.55 E-value=27 Score=24.45 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=21.2
Q ss_pred ceEEEEEeeechhh------HHHHHHHHhccCCeeeEEe
Q 022030 129 STVVLKIRLHCEGC------ISKIKKIIYKTKGVDNVTI 161 (303)
Q Consensus 129 ~~~~l~Vgm~C~~C------~~kI~k~l~~~~GV~~v~v 161 (303)
.++.+.+-+...+| ...|+.+|..++||.+|+|
T Consensus 34 ~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 34 GKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp CEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred CEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 35556664444444 4778888999999998875
No 33
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=47.34 E-value=49 Score=22.91 Aligned_cols=53 Identities=19% Similarity=0.203 Sum_probs=35.3
Q ss_pred EEEE-eeechhhHHHHHHHHhccCCeeeEEeeCCCCeEEEEe--cCCHHHHHHHHHHhcCCcEEEc
Q 022030 132 VLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKG--TMDVKELVPYLKEKLKRNVEVV 194 (303)
Q Consensus 132 ~l~V-gm~C~~C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~g--~~d~~~l~~~l~~k~g~~a~~v 194 (303)
+|.+ |+.|+...-++.++|..++.- +.+.|.. .....+|...++ ..|+.+..+
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~G---------~~l~v~~d~~~~~~di~~~~~-~~g~~~~~~ 57 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPPG---------EVLEVLVDDPAAVEDIPRWCE-ENGYEVVEV 57 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESSTTHHHHHHHHHH-HHTEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCCC---------CEEEEEECCccHHHHHHHHHH-HCCCEEEEE
Confidence 4667 999999999999999997432 2344432 244567777777 777764433
No 34
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=42.85 E-value=1.3e+02 Score=21.83 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCEEEEe
Q 022030 41 AKKIKRAMKNYEGVVDVKTDCGANKVTVT 69 (303)
Q Consensus 41 a~kI~~~L~~~~GV~~v~vd~~~~~v~V~ 69 (303)
...+..+|..++|++-...+-. +++.|+
T Consensus 17 ~~~v~~~l~~~~gvEVh~~~~~-GKiVVt 44 (79)
T PF03927_consen 17 LEEVAEALAAIPGVEVHAVDED-GKIVVT 44 (79)
T ss_dssp HHHHHHHHCCSTTEEEEEEETT-TEEEEE
T ss_pred HHHHHHHHHcCCCcEEEeeCCC-CeEEEE
Confidence 3456677777777753334333 555554
No 35
>PRK13748 putative mercuric reductase; Provisional
Probab=42.61 E-value=60 Score=32.36 Aligned_cols=40 Identities=23% Similarity=0.532 Sum_probs=34.5
Q ss_pred EEEEE-eeCHhhHHHHHHHHhcCCCceEEEEEcCCCEEEEe
Q 022030 30 VLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVT 69 (303)
Q Consensus 30 ~l~v~-m~C~~Ca~kI~~~L~~~~GV~~v~vd~~~~~v~V~ 69 (303)
.+.+. |+|.+|..+++..+...+++....+++....+.+.
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~ 43 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLA 43 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEE
Confidence 35677 99999999999999999999888888888886665
No 36
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=40.79 E-value=59 Score=24.71 Aligned_cols=60 Identities=22% Similarity=0.347 Sum_probs=38.4
Q ss_pred ceEEEEEEE-eeCHhhHHHHHHHHhcCCCceEEEEE-----cCCCEEE--Eee-cCChHHHHHHHHhccc
Q 022030 26 VVTVVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTD-----CGANKVT--VTG-KVEPAKLKERLEAKTK 86 (303)
Q Consensus 26 ~~~~~l~v~-m~C~~Ca~kI~~~L~~~~GV~~v~vd-----~~~~~v~--V~~-~~~~~~i~~~i~~~~~ 86 (303)
..+++|.|- -|-. -.-.+...|..++||..+.+. ..+..+. |.| .++.+.|.++|++.++
T Consensus 4 irRlVLDVlKP~~p-~i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg 72 (95)
T PF02680_consen 4 IRRLVLDVLKPHEP-SIVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGG 72 (95)
T ss_dssp EEEEEEEEEEESSS--HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-
T ss_pred eeEEEEEeecCCCC-CHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCC
Confidence 455666666 4333 344677889999999876654 3344433 446 4899999999996554
No 37
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=39.95 E-value=4.3e+02 Score=28.90 Aligned_cols=123 Identities=11% Similarity=0.258 Sum_probs=68.6
Q ss_pred hHHHHHHHHhcCCCceEEEEEcCCCEEEEe--e--cCChH----HHHHHHHhcccCcccccCCCCCCCCCCCCCcccccc
Q 022030 40 CAKKIKRAMKNYEGVVDVKTDCGANKVTVT--G--KVEPA----KLKERLEAKTKKKVDLVSPQPKKDAGGGEKKSEEKS 111 (303)
Q Consensus 40 Ca~kI~~~L~~~~GV~~v~vd~~~~~v~V~--~--~~~~~----~i~~~i~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~ 111 (303)
-...||+.|+.++|+..++-....+..+|+ . ..|++ ++.++|...... ++.... ...- .+
T Consensus 62 Vt~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~~d~d~A~~~V~~kv~~~~~~----LP~~~~-~p~v--~~----- 129 (1009)
T COG0841 62 VTQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELGTDPDTAAVQVQNKIQQAESR----LPSGVQ-QPGV--TV----- 129 (1009)
T ss_pred HhHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCCCChHHHHHHHHHHHHHHHhc----CCCccC-CCce--Ee-----
Confidence 346799999999999876655555655544 2 34554 455555422211 111100 0000 00
Q ss_pred cCCCCCCCcccCCCCCcceEEEEE-e--ee----chhhHHHHHHHHhccCCeeeEEeeCC-CCeEEEE--------ecCC
Q 022030 112 EKKPDDKKSEEKKPPKESTVVLKI-R--LH----CEGCISKIKKIIYKTKGVDNVTIDGG-KDLVTVK--------GTMD 175 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~V-g--m~----C~~C~~kI~k~l~~~~GV~~v~vd~~-~~~v~V~--------g~~d 175 (303)
. +......+.+.+ . +. -..-.+.|+..|.+++||.++++-.. ...+.|. -.++
T Consensus 130 ----------~-~~~~~~i~~~al~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt 198 (1009)
T COG0841 130 ----------E-KSSSNPLLILALTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLT 198 (1009)
T ss_pred ----------c-cCCCceEEEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCC
Confidence 0 011122334444 2 22 12345668899999999999999886 4555564 1377
Q ss_pred HHHHHHHHHH
Q 022030 176 VKELVPYLKE 185 (303)
Q Consensus 176 ~~~l~~~l~~ 185 (303)
+.++...|+.
T Consensus 199 ~~dV~~ai~~ 208 (1009)
T COG0841 199 PSDVQSAIRA 208 (1009)
T ss_pred HHHHHHHHHH
Confidence 8889999983
No 38
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=37.59 E-value=1.3e+02 Score=22.42 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=31.8
Q ss_pred hhHHHHHHHHhccCCeeeEEeeCCCCeEEEE-ecCCHHHHHHHHH
Q 022030 141 GCISKIKKIIYKTKGVDNVTIDGGKDLVTVK-GTMDVKELVPYLK 184 (303)
Q Consensus 141 ~C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~-g~~d~~~l~~~l~ 184 (303)
.-...+.+.|..++|+.-...|...+++.|+ -..+...+++.|.
T Consensus 17 e~~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~~~~~~~~~~i~ 61 (87)
T PRK10553 17 ERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLLQTIE 61 (87)
T ss_pred HHHHHHHHHHHcCCCcEEEeecCCCCeEEEEEEeCChHHHHHHHH
Confidence 3467888999999999888887778888887 3345555555444
No 39
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=37.08 E-value=1.6e+02 Score=21.30 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=30.8
Q ss_pred hHHHHHHHHhccCCeeeEEeeCCCCeEEEE-ecCCHHHHHHHHH
Q 022030 142 CISKIKKIIYKTKGVDNVTIDGGKDLVTVK-GTMDVKELVPYLK 184 (303)
Q Consensus 142 C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~-g~~d~~~l~~~l~ 184 (303)
=...+.+.|..++|+.-...+.. +++.|+ -..+...+.+.|.
T Consensus 16 ~~~~v~~~l~~~~gvEVh~~~~~-GKiVVtiE~~~~~~~~~~~~ 58 (79)
T PF03927_consen 16 RLEEVAEALAAIPGVEVHAVDED-GKIVVTIEAESSEEEVDLID 58 (79)
T ss_dssp CHHHHHHHHCCSTTEEEEEEETT-TEEEEEEEESSHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCcEEEeeCCC-CeEEEEEEeCChHHHHHHHH
Confidence 35678899999999977777766 777776 4466666666665
No 40
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=36.25 E-value=97 Score=23.14 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=27.1
Q ss_pred HHHHHHHhccCCeeeEEeeCCCCeEEEEecCCHHHHHHHHHHhcC
Q 022030 144 SKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPYLKEKLK 188 (303)
Q Consensus 144 ~kI~k~l~~~~GV~~v~vd~~~~~v~V~g~~d~~~l~~~l~~k~g 188 (303)
..|+.+|..++|+.++.+++. ..-...++.+.+.-|++++
T Consensus 58 ~~i~~al~~l~gv~~v~v~i~-----~~~~~~~~~~~~~~~~~~~ 97 (99)
T TIGR02945 58 GEVENAVRAVPGVGSVTVELV-----WDPPWTPERMSEEARLELG 97 (99)
T ss_pred HHHHHHHHhCCCCceEEEEEE-----eeCCCChHHCCHHHHHHcC
Confidence 457788889999998887742 2334556666666666554
No 41
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=32.35 E-value=1e+02 Score=26.10 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=33.8
Q ss_pred eEEEEEeeechhhH------HHHHHHHhccCCeeeEEeeCCCCeEEEEecCCHHHHHHHHHHhcC
Q 022030 130 TVVLKIRLHCEGCI------SKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPYLKEKLK 188 (303)
Q Consensus 130 ~~~l~Vgm~C~~C~------~kI~k~l~~~~GV~~v~vd~~~~~v~V~g~~d~~~l~~~l~~k~g 188 (303)
++.+.+-+....|. ..|+.+|..++||.++.|++ +..-..+++.+.+..|.++|
T Consensus 114 ~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l-----~~dp~W~~~~~s~~ar~~lg 173 (174)
T TIGR03406 114 RVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVEL-----VFDPPWSREMMSEAAKLELG 173 (174)
T ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEE-----EecCCCChHHCCHHHHHHcC
Confidence 35555544544443 45888899999999888763 22233666677666665544
No 42
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=31.62 E-value=90 Score=26.42 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=8.0
Q ss_pred CCCCCCCCCCCCC
Q 022030 261 PMENQHQVVYANQ 273 (303)
Q Consensus 261 ~~y~~~gy~~~~~ 273 (303)
++|+..+|.+.+.
T Consensus 141 ~m~~~~~y~~~~~ 153 (182)
T PF06495_consen 141 PMQGAYPYQMPPR 153 (182)
T ss_pred ccccccccccCCC
Confidence 3566667776643
No 43
>PRK11023 outer membrane lipoprotein; Provisional
Probab=31.53 E-value=3.3e+02 Score=23.20 Aligned_cols=110 Identities=17% Similarity=0.193 Sum_probs=66.1
Q ss_pred eeCHhhHHHHHHHHhcCCCce---EEEEEcCCCEEEEeecCChHHHHHHHHhcccCcccccCCCCCCCCCCCCCcccccc
Q 022030 35 LHCEGCAKKIKRAMKNYEGVV---DVKTDCGANKVTVTGKVEPAKLKERLEAKTKKKVDLVSPQPKKDAGGGEKKSEEKS 111 (303)
Q Consensus 35 m~C~~Ca~kI~~~L~~~~GV~---~v~vd~~~~~v~V~~~~~~~~i~~~i~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~ 111 (303)
+....=..+|+.+|..-+.+. .+.+....+.|+++|.++.+........... .+.-+.
T Consensus 45 ~dD~~i~~~V~~aL~~~~~l~~~~~I~V~v~~G~V~L~G~V~~~~~k~~A~~ia~-~v~GV~------------------ 105 (191)
T PRK11023 45 VDDGTLELRVNNALSKDEQIKKEARINVTAYQGKVLLTGQSPNAELSERAKQIAM-GVEGVN------------------ 105 (191)
T ss_pred ehhHHHHHHHHHHHhhCcccCcCceEEEEEECCEEEEEEEeCCHHHHHHHHHHHh-cCCCce------------------
Confidence 345556778888887766553 5777888999999998766555443332211 110000
Q ss_pred cCCCCCCCcccCCCCCcceEEEEE--------eeechhhHHHHHHHHhccCCeee--EEeeCCCCeEEEEecCCHHHH
Q 022030 112 EKKPDDKKSEEKKPPKESTVVLKI--------RLHCEGCISKIKKIIYKTKGVDN--VTIDGGKDLVTVKGTMDVKEL 179 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~V--------gm~C~~C~~kI~k~l~~~~GV~~--v~vd~~~~~v~V~g~~d~~~l 179 (303)
...-.|.| .+....=..+|+..|...+.+.. +.|.-.++.|++.|.++..+.
T Consensus 106 ----------------~V~N~l~V~~~~~~~~~~~D~~It~kik~~L~~~~~v~~~~I~V~t~~G~V~L~G~v~~~e~ 167 (191)
T PRK11023 106 ----------------EVYNEIRQGQPIGLGTASKDTWITTKVRSQLLTSDSVKSSNVKVTTENGEVFLLGLVTQREA 167 (191)
T ss_pred ----------------eecceeeeccccccccccCcHHHHHHHHHHHhcCCCCCcceEEEEEECcEEEEEEEeCHHHH
Confidence 00001111 12334466788888888777764 445557899999998876543
No 44
>PF08712 Nfu_N: Scaffold protein Nfu/NifU N terminal; InterPro: IPR014824 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This domain is found at the N terminus of NifU (from NIF system) and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the assembly of iron-sulphur clusters, functioning as scaffolds [, ]. ; GO: 0005506 iron ion binding; PDB: 2FFM_A 1PQX_A 2K1H_A.
Probab=30.90 E-value=1.9e+02 Score=21.39 Aligned_cols=42 Identities=29% Similarity=0.517 Sum_probs=30.6
Q ss_pred HHHHHHHhccCCeeeEEeeCCCCeEEEE--ecCCHHHHHHHHHHhc
Q 022030 144 SKIKKIIYKTKGVDNVTIDGGKDLVTVK--GTMDVKELVPYLKEKL 187 (303)
Q Consensus 144 ~kI~k~l~~~~GV~~v~vd~~~~~v~V~--g~~d~~~l~~~l~~k~ 187 (303)
.-+-+.|-.++||.+|-+. .+-|+|+ ...+.+.|...|+.-+
T Consensus 37 spLA~~Lf~i~gV~~Vf~~--~dfItVtK~~~~~W~~l~~~I~~~I 80 (87)
T PF08712_consen 37 SPLAQALFAIPGVKSVFIG--DDFITVTKNPDADWEDLKPEIREVI 80 (87)
T ss_dssp -HHHHHHHTSTTEEEEEEE--TTEEEEEE-TTS-HHHHHHHHHHHT
T ss_pred CHHHHHhcCCCCEeEEEEE--CCEEEEeeCCCCCHHHHHHHHHHHH
Confidence 3455667799999998865 5778887 5589999988887533
No 45
>PRK11018 hypothetical protein; Provisional
Probab=29.59 E-value=2.1e+02 Score=20.46 Aligned_cols=55 Identities=9% Similarity=0.021 Sum_probs=38.1
Q ss_pred eEEEEE-eeechhhHHHHHHHHhccCCeeeEEeeCCCCeEEEE--ecCCHHHHHHHHHHhcCCcEEEc
Q 022030 130 TVVLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVK--GTMDVKELVPYLKEKLKRNVEVV 194 (303)
Q Consensus 130 ~~~l~V-gm~C~~C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~--g~~d~~~l~~~l~~k~g~~a~~v 194 (303)
..+|.+ |+.|+.-.-+..++|.+++.- +.+.|. ......+|...++ ..|+.+..+
T Consensus 8 ~~~lD~rG~~CP~Pvl~~kk~l~~l~~G---------~~L~V~~d~~~a~~di~~~~~-~~G~~v~~~ 65 (78)
T PRK11018 8 DYRLDMVGEPCPYPAVATLEALPQLKKG---------EILEVVSDCPQSINNIPLDAR-NHGYTVLDI 65 (78)
T ss_pred CeeEECCCCcCCHHHHHHHHHHHhCCCC---------CEEEEEeCCccHHHHHHHHHH-HcCCEEEEE
Confidence 467888 999999999999999888532 223333 2345566777777 777776543
No 46
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=29.16 E-value=75 Score=26.94 Aligned_cols=33 Identities=18% Similarity=0.412 Sum_probs=23.7
Q ss_pred EEEEEEeeCHhhH------HHHHHHHhcCCCceEEEEEc
Q 022030 29 VVLKVDLHCEGCA------KKIKRAMKNYEGVVDVKTDC 61 (303)
Q Consensus 29 ~~l~v~m~C~~Ca------~kI~~~L~~~~GV~~v~vd~ 61 (303)
+.+.+.+...+|. ..|+.+|..++||.++.|++
T Consensus 115 V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l 153 (174)
T TIGR03406 115 VDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVEL 153 (174)
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEE
Confidence 4455556666655 44888899999999887763
No 47
>PRK06418 transcription elongation factor NusA-like protein; Validated
Probab=28.11 E-value=1.8e+02 Score=24.42 Aligned_cols=65 Identities=29% Similarity=0.415 Sum_probs=41.0
Q ss_pred EEEEeeechhhHHHHH------------HHHhcc------CCeeeEEeeCCCCeEEE-E--ec---C-CHHHHHHHHHHh
Q 022030 132 VLKIRLHCEGCISKIK------------KIIYKT------KGVDNVTIDGGKDLVTV-K--GT---M-DVKELVPYLKEK 186 (303)
Q Consensus 132 ~l~Vgm~C~~C~~kI~------------k~l~~~------~GV~~v~vd~~~~~v~V-~--g~---~-d~~~l~~~l~~k 186 (303)
-++-|+-|.+|.+++. ++|.++ .++.-...-...+++++ . |. + -.-..+++|++.
T Consensus 9 c~kt~ilC~~c~~~~~~G~v~~~dv~i~~~l~~l~~~~~l~~~~~~k~~~~ddrvIfvV~~gdg~aIGk~G~~ik~l~~~ 88 (166)
T PRK06418 9 CVKTGLLCPRCQSLLDSGEVTELDVEVSKVLLKLEEDKELKDVEYKKAYEVDDLVILLVTSGPRIPIGKGGKIAKALSRK 88 (166)
T ss_pred EeccCccChhHHhHhhcCceEEeehHHHHHHHHhhccccccCceEEEEEEeCCEEEEEEeCCCcccccccchHHHHHHHH
Confidence 3444899999999865 466665 33332222223466664 3 33 1 113679999999
Q ss_pred cCCcEEEccC
Q 022030 187 LKRNVEVVPA 196 (303)
Q Consensus 187 ~g~~a~~v~~ 196 (303)
+|+++++|.-
T Consensus 89 lgk~VevVE~ 98 (166)
T PRK06418 89 LGKKVRVVEK 98 (166)
T ss_pred hCCcEEEEEc
Confidence 9999999863
No 48
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=27.33 E-value=1.4e+02 Score=24.56 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=30.3
Q ss_pred ceEEEEEEE-eeCHhhHHHHHHHHhcCCCceEEEEEcC-CCEEE
Q 022030 26 VVTVVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCG-ANKVT 67 (303)
Q Consensus 26 ~~~~~l~v~-m~C~~Ca~kI~~~L~~~~GV~~v~vd~~-~~~v~ 67 (303)
...+++.|+ --|..|..-|....++ -|+.++.|... ++++.
T Consensus 99 g~~~tm~Vdr~vC~~C~~~i~~~a~~-lGl~~L~I~~~~sG~~~ 141 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCGGDIPSMAEK-LGLKSLTIHEPDSGKVY 141 (146)
T ss_pred CCeEEEEECcccchHHHHHHHHHHHH-cCCCeEEEEecCCCcEE
Confidence 345778888 9999999888766665 67888877766 55443
No 49
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=27.22 E-value=1.2e+02 Score=25.60 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=21.3
Q ss_pred hhHHHHHHHHhccCCeeeEEeeCCCCe
Q 022030 141 GCISKIKKIIYKTKGVDNVTIDGGKDL 167 (303)
Q Consensus 141 ~C~~kI~k~l~~~~GV~~v~vd~~~~~ 167 (303)
+|-.-++..+.+++||.++.+-.+++.
T Consensus 11 GCFWg~E~~f~~~~GV~~t~vGYagG~ 37 (172)
T PRK14054 11 GCFWGMEAPFDRVKGVISTRVGYTGGH 37 (172)
T ss_pred CChhhhHHHHccCCCEEEEEeeecCCC
Confidence 455666777889999999999887765
No 50
>PRK09577 multidrug efflux protein; Reviewed
Probab=26.92 E-value=8.5e+02 Score=26.64 Aligned_cols=43 Identities=9% Similarity=0.218 Sum_probs=33.4
Q ss_pred HHHHHHHHhccCCeeeEEeeCCCCeEEEE--------ecCCHHHHHHHHHH
Q 022030 143 ISKIKKIIYKTKGVDNVTIDGGKDLVTVK--------GTMDVKELVPYLKE 185 (303)
Q Consensus 143 ~~kI~k~l~~~~GV~~v~vd~~~~~v~V~--------g~~d~~~l~~~l~~ 185 (303)
...|+..|.+++||.+|.+......+.|. -.++..+|.+.|+.
T Consensus 158 ~~~l~~~L~~v~GV~~V~~~G~e~~v~V~vD~~kl~~~Gls~~~V~~~l~~ 208 (1032)
T PRK09577 158 SANVLQALRRVEGVGKVQFWGAEYAMRIWPDPVKLAALGLTASDIASAVRA 208 (1032)
T ss_pred HHHHHHHHhcCCCcEEEEecCCceEEEEEeCHHHHHHcCCCHHHHHHHHHH
Confidence 46799999999999999998755555553 23677888889984
No 51
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=26.21 E-value=1.6e+02 Score=20.11 Aligned_cols=51 Identities=16% Similarity=0.224 Sum_probs=34.1
Q ss_pred EEE-eeechhhHHHHHHHHhccCCeeeEEeeCCCCeEEEE--ecCCHHHHHHHHHHhcCCcEEEc
Q 022030 133 LKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVK--GTMDVKELVPYLKEKLKRNVEVV 194 (303)
Q Consensus 133 l~V-gm~C~~C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~--g~~d~~~l~~~l~~k~g~~a~~v 194 (303)
|.+ |+.|..-.-++.++| ++.. ++.+.|. ......+|...++ +.|+.+.+.
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~---------g~~l~v~~d~~~s~~~i~~~~~-~~G~~~~~~ 55 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEA---------GGEIEVLVDNEVAKENVSRFAE-SRGYEVSVE 55 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCC---------CCEEEEEEcChhHHHHHHHHHH-HcCCEEEEE
Confidence 445 899999999999998 6532 2234443 2344567777777 788887543
No 52
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.84 E-value=1.6e+02 Score=20.19 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=24.7
Q ss_pred eEEEEEeeechh-hHHHHHHHHhccCCeeeEEe
Q 022030 130 TVVLKIRLHCEG-CISKIKKIIYKTKGVDNVTI 161 (303)
Q Consensus 130 ~~~l~Vgm~C~~-C~~kI~k~l~~~~GV~~v~v 161 (303)
.+.|.|...-.. -...|.+.|.+++||.+|.+
T Consensus 42 ~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 42 NVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred EEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 455555555555 88999999999999999875
No 53
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=25.20 E-value=3.6e+02 Score=24.88 Aligned_cols=82 Identities=16% Similarity=0.292 Sum_probs=49.7
Q ss_pred hHHHHHHHHhcCCCceEEEEEcCCCEEEEeecCChHHHHHHHHhcccCc--ccccCCCCCCCCCCCCCcccccccCCCCC
Q 022030 40 CAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKERLEAKTKKK--VDLVSPQPKKDAGGGEKKSEEKSEKKPDD 117 (303)
Q Consensus 40 Ca~kI~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~~~~~--~~l~s~~~~~~~~~~~~~~~~~~~~~~~~ 117 (303)
=...+...|++.+||.+++. ++.++..+.+....+.. .+.++..
T Consensus 80 ~~~~l~~~L~~~~~V~~v~~------------vskeeal~~l~~~~g~~~~l~~l~~n---------------------- 125 (309)
T PRK11026 80 AANAVVEQLKAEDGVEKVNY------------LSREEALGEFRNWSGFGGALDMLEEN---------------------- 125 (309)
T ss_pred HHHHHHHHHhCCCCcceEEE------------ECHHHHHHHHHHhhCchHHHhhCcCC----------------------
Confidence 34688889999999988765 45666666655322211 0111111
Q ss_pred CCcccCCCCCcceEEEEE--eeechhhHHHHHHHHhccCCeeeEEeeC
Q 022030 118 KKSEEKKPPKESTVVLKI--RLHCEGCISKIKKIIYKTKGVDNVTIDG 163 (303)
Q Consensus 118 ~~~~~~~~~~~~~~~l~V--gm~C~~C~~kI~k~l~~~~GV~~v~vd~ 163 (303)
|-...+.+++ +..-..-...|.+.+.+++||.++..+.
T Consensus 126 --------PLP~si~V~~~~~~~~~~~~~~i~~~l~~~~~V~~v~~~~ 165 (309)
T PRK11026 126 --------PLPAVAIIIPKLDFQSSEKLNTLRDRLAQIKGVDEVRMDD 165 (309)
T ss_pred --------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCceeecCh
Confidence 2222334444 4445667788999999999998877653
No 54
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=24.31 E-value=1.8e+02 Score=24.14 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=28.2
Q ss_pred chhhHHHHHHHHhccCCeeeEEeeCCCCeEEEE
Q 022030 139 CEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVK 171 (303)
Q Consensus 139 C~~C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~ 171 (303)
-..=+..|.+.+.+++||.++.+=...+.+.|.
T Consensus 73 ~~~~a~~i~~~v~~~~~V~~A~vvv~~~~a~Va 105 (177)
T PF09580_consen 73 RQQLADRIANRVKKVPGVEDATVVVTDDNAYVA 105 (177)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEECCEEEEE
Confidence 345688999999999999999988888888875
No 55
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=24.00 E-value=1.4e+02 Score=25.22 Aligned_cols=28 Identities=14% Similarity=0.389 Sum_probs=23.4
Q ss_pred HhhHHHHHHHHhcCCCceEEEEEcCCCE
Q 022030 38 EGCAKKIKRAMKNYEGVVDVKTDCGANK 65 (303)
Q Consensus 38 ~~Ca~kI~~~L~~~~GV~~v~vd~~~~~ 65 (303)
.||-..++..+.+++||.++.+-...+.
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~ 37 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGH 37 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCC
Confidence 5777788889999999999998877664
No 56
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=23.46 E-value=1e+03 Score=26.13 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=33.4
Q ss_pred HHHHHHHHhccCCeeeEEeeCCCCeEEEE--------ecCCHHHHHHHHHH
Q 022030 143 ISKIKKIIYKTKGVDNVTIDGGKDLVTVK--------GTMDVKELVPYLKE 185 (303)
Q Consensus 143 ~~kI~k~l~~~~GV~~v~vd~~~~~v~V~--------g~~d~~~l~~~l~~ 185 (303)
...++..|..++||.+|.+......+.|. -.++..++...|+.
T Consensus 159 ~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~~v~~al~~ 209 (1037)
T PRK10555 159 ASNIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTTKDVTDAIES 209 (1037)
T ss_pred HHHHHHHhhcCCCeEEEEEcCCceEEEEEECHHHHHHcCCCHHHHHHHHHH
Confidence 46788999999999999998765556664 23677888888884
No 57
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=23.10 E-value=1.5e+02 Score=22.63 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=21.9
Q ss_pred hhHHHHHHHHhccCCeeeEEeeCCCCeEEEEecCCHHHHHHHHH
Q 022030 141 GCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPYLK 184 (303)
Q Consensus 141 ~C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~g~~d~~~l~~~l~ 184 (303)
.|.+.+ +.|.++.=--.....-..-+++|...+..+++..++.
T Consensus 48 hclrtm-rhleklkipyefqygwlgvkitiksnvpndevtkkvs 90 (138)
T PF05663_consen 48 HCLRTM-RHLEKLKIPYEFQYGWLGVKITIKSNVPNDEVTKKVS 90 (138)
T ss_pred HHHHHH-HHHHhcCCCeeeeecceeEEEEEecCCCchHhhhccC
Confidence 444333 4444443333333333444567777776676666554
No 58
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=22.26 E-value=1e+03 Score=26.07 Aligned_cols=42 Identities=24% Similarity=0.367 Sum_probs=31.8
Q ss_pred HHHHHHHhccCCeeeEEeeCCC-CeEEEE--------ecCCHHHHHHHHHH
Q 022030 144 SKIKKIIYKTKGVDNVTIDGGK-DLVTVK--------GTMDVKELVPYLKE 185 (303)
Q Consensus 144 ~kI~k~l~~~~GV~~v~vd~~~-~~v~V~--------g~~d~~~l~~~l~~ 185 (303)
..|+..|.+++||..|.+.... ..+.|. -.+++.++...|+.
T Consensus 169 ~~l~~~L~~i~gV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~~v~~ai~~ 219 (1040)
T PRK10503 169 TRVAQKISQVSGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAITG 219 (1040)
T ss_pred HHHHHHhcCCCCceEEEecCCCceEEEEEECHHHHHHcCCCHHHHHHHHHH
Confidence 5788999999999999988743 445554 23677788888874
No 59
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=22.12 E-value=77 Score=21.33 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=15.4
Q ss_pred HHHHHHhc---cCCeeeEEeeCCCCeEEEEecCCHHH
Q 022030 145 KIKKIIYK---TKGVDNVTIDGGKDLVTVKGTMDVKE 178 (303)
Q Consensus 145 kI~k~l~~---~~GV~~v~vd~~~~~v~V~g~~d~~~ 178 (303)
+|+..|.. +++. ++.+....+.++++|.++...
T Consensus 3 ~v~~~L~~~~~~~~~-~i~v~v~~g~v~L~G~v~s~~ 38 (64)
T PF04972_consen 3 KVRAALRADPWLPDS-NISVSVENGVVTLSGEVPSQE 38 (64)
T ss_dssp ----------CTT-T-TEEEEEECTEEEEEEEESSCH
T ss_pred ccccccccccccCCC-eEEEEEECCEEEEEeeCcHHH
Confidence 45555555 3333 566666788888888764433
No 60
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=21.08 E-value=3.2e+02 Score=20.10 Aligned_cols=52 Identities=21% Similarity=0.253 Sum_probs=36.8
Q ss_pred hhHHHHHHHHhccCCeeeEEeeCCCCeEEEE----ecCCHHHHHHHHHHhcCCcEEE
Q 022030 141 GCISKIKKIIYKTKGVDNVTIDGGKDLVTVK----GTMDVKELVPYLKEKLKRNVEV 193 (303)
Q Consensus 141 ~C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~----g~~d~~~l~~~l~~k~g~~a~~ 193 (303)
.|...+...-.. --+.+++..+..+++++- +.+|...|++.|.+..+..|++
T Consensus 30 ~c~~~~~~~~L~-m~lvd~e~~~D~~k~~fyy~a~~rvDFR~Lvr~L~~~f~~RIem 85 (88)
T PF04468_consen 30 FCRELVKELGLP-MKLVDVEYQFDGSKLTFYYTAESRVDFRELVRDLAREFKTRIEM 85 (88)
T ss_pred HHHHHHHHcCCC-eEEEEEEEEcCCCEEEEEEEeCCcCcHHHHHHHHHHHhCceEEE
Confidence 344444433221 236678888899999984 4599999999999888877765
No 61
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=20.80 E-value=2.3e+02 Score=19.87 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=25.9
Q ss_pred ceEEEEEeeechhhHHHHHHHHhccCCeeeEE
Q 022030 129 STVVLKIRLHCEGCISKIKKIIYKTKGVDNVT 160 (303)
Q Consensus 129 ~~~~l~Vgm~C~~C~~kI~k~l~~~~GV~~v~ 160 (303)
..+.|.|......-...|.+.|.+++||.+|.
T Consensus 48 ~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 48 ARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 35566667777788899999999999998874
No 62
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=20.67 E-value=2.3e+02 Score=23.37 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=30.3
Q ss_pred cceEEEEE-eeechhhHHHHHHHHhccCCeeeEEeeCC-CCeEE
Q 022030 128 ESTVVLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGG-KDLVT 169 (303)
Q Consensus 128 ~~~~~l~V-gm~C~~C~~kI~k~l~~~~GV~~v~vd~~-~~~v~ 169 (303)
...+++.| .-.|..|..-|...+.+ -|+.+++|... ++++.
T Consensus 99 g~~~tm~Vdr~vC~~C~~~i~~~a~~-lGl~~L~I~~~~sG~~~ 141 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCGGDIPSMAEK-LGLKSLTIHEPDSGKVY 141 (146)
T ss_pred CCeEEEEECcccchHHHHHHHHHHHH-cCCCeEEEEecCCCcEE
Confidence 34678888 88999999888666555 58888888775 55443
No 63
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=20.45 E-value=4e+02 Score=20.34 Aligned_cols=56 Identities=21% Similarity=0.178 Sum_probs=32.9
Q ss_pred EEEEE-eeechhhHHHHHHHHhccCCeeeEEeeCCCCeEEEE--ecCCHHHHHHHHHHh
Q 022030 131 VVLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVK--GTMDVKELVPYLKEK 186 (303)
Q Consensus 131 ~~l~V-gm~C~~C~~kI~k~l~~~~GV~~v~vd~~~~~v~V~--g~~d~~~l~~~l~~k 186 (303)
+.|+| |++-.-+...|...|..+..|.-|.+........|. ..-+...++..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 35777 777777799999999999989888887767777776 345577888888744
Done!