BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022031
         (303 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P43935|Y077_HAEIN Uncharacterized protein HI_0077 OS=Haemophilus influenzae (strain
           ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0077 PE=4 SV=1
          Length = 288

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 113/234 (48%), Gaps = 30/234 (12%)

Query: 7   VEAALRVLNTPDPFEKARLGDSVACRWLDGTITQPYNRSL-DLP----------VPDRPA 55
           VE AL+   T +P EK RL + +     D  + Q     L D P           P++P 
Sbjct: 12  VETALK---TANPQEKCRLVNDL----YDNLLPQIQLIKLEDFPEIVPQDNIAAFPEKPL 64

Query: 56  RLTNVKLVSPSLMPKLGKAGSLQSRQAIVHSLAHTESWAIDLSWDIVARFGK--QEAMPR 113
                 LV+P  +PK   A   +   A +H++AH E  AI+L  D   RFG+  QE +  
Sbjct: 65  ------LVAPKDVPKRSFATE-EGYAATLHAIAHIEFNAINLGLDAAWRFGRNAQEELGE 117

Query: 114 --EFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIE 171
              F  D+++VA++E  HF+L+   L+ LG  YG   AH GLW+ A AT+ D+  R+A+ 
Sbjct: 118 GLAFVKDWLRVAREESTHFSLVNEHLKTLGYQYGDFEAHAGLWEMAQATAHDIWERMALV 177

Query: 172 HCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLC 225
             V EARGLD  P    +     D     +L+ ++  +EI H   G  W+  L 
Sbjct: 178 PRVLEARGLDATPVLQEKIAQRKDFAAVNILD-IILRDEIGHVYIGNHWYHALS 230


>sp|A1RGY0|PNP_SHESW Polyribonucleotide nucleotidyltransferase OS=Shewanella sp. (strain
           W3-18-1) GN=pnp PE=3 SV=1
          Length = 699

 Score = 32.0 bits (71), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 17/111 (15%)

Query: 50  VPDRPARLTNVKLVSPSLMPKLGKAGSLQSRQAIVHSLAHTESWAIDLSWDIVARFGK-- 107
           + D   R+T +K+    +   +GK G      A++ +L       I+L  D   R     
Sbjct: 547 ISDHAPRITTIKINPEKIRDVIGKGG------AVIRALTEETGTTIELEDDGTVRIASSN 600

Query: 108 ----QEAMPR-EFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGL 153
               +EA+ R E  T  V+V    GR +     R+ + G+    LP  DGL
Sbjct: 601 GEATKEAIRRIEEITSEVEV----GRIYNGKVIRIVDFGAFVNILPGKDGL 647


>sp|A4Y9B5|PNP_SHEPC Polyribonucleotide nucleotidyltransferase OS=Shewanella
           putrefaciens (strain CN-32 / ATCC BAA-453) GN=pnp PE=3
           SV=1
          Length = 699

 Score = 32.0 bits (71), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 17/111 (15%)

Query: 50  VPDRPARLTNVKLVSPSLMPKLGKAGSLQSRQAIVHSLAHTESWAIDLSWDIVARFGK-- 107
           + D   R+T +K+    +   +GK G      A++ +L       I+L  D   R     
Sbjct: 547 ISDHAPRITTIKINPEKIRDVIGKGG------AVIRALTEETGTTIELEDDGTVRIASSN 600

Query: 108 ----QEAMPR-EFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGL 153
               +EA+ R E  T  V+V    GR +     R+ + G+    LP  DGL
Sbjct: 601 GEATKEAIRRIEEITSEVEV----GRIYNGKVIRIVDFGAFVNILPGKDGL 647


>sp|A1S467|PNP_SHEAM Polyribonucleotide nucleotidyltransferase OS=Shewanella amazonensis
           (strain ATCC BAA-1098 / SB2B) GN=pnp PE=3 SV=1
          Length = 699

 Score = 31.6 bits (70), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 17/111 (15%)

Query: 50  VPDRPARLTNVKLVSPSLMPKLGKAGSLQSRQAIVHSLAHTESWAIDLSWDIVARFGK-- 107
           + D   R+T +K+    +   +GK G      A++ +L       I+L  D   +     
Sbjct: 547 ISDFAPRITTIKINPEKIRDVIGKGG------AVIRALTEETGTTIELEDDGTVKIASNN 600

Query: 108 ----QEAMPR-EFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGL 153
               +EA+ R E  T  V+V    GR +T    R+ + G+    LP  DGL
Sbjct: 601 GDATREAIRRIEEITSEVEV----GRLYTGKVIRIVDFGAFVNILPGKDGL 647


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.134    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,285,044
Number of Sequences: 539616
Number of extensions: 5023188
Number of successful extensions: 9957
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9955
Number of HSP's gapped (non-prelim): 5
length of query: 303
length of database: 191,569,459
effective HSP length: 117
effective length of query: 186
effective length of database: 128,434,387
effective search space: 23888795982
effective search space used: 23888795982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)