Query 022031
Match_columns 303
No_of_seqs 117 out of 380
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 07:29:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04305 DUF455: Protein of un 100.0 3.9E-96 8E-101 680.5 28.3 253 14-295 1-253 (253)
2 COG2833 Uncharacterized protei 100.0 4.4E-96 9E-101 666.3 25.7 264 4-300 3-266 (268)
3 cd00657 Ferritin_like Ferritin 98.9 6.9E-09 1.5E-13 80.4 9.6 129 83-221 2-130 (130)
4 PF11583 AurF: P-aminobenzoate 97.5 0.0014 3E-08 62.0 11.8 143 81-229 80-232 (304)
5 cd01045 Ferritin_like_AB Uncha 97.2 0.0059 1.3E-07 49.2 11.1 117 90-216 9-134 (139)
6 cd01055 Nonheme_Ferritin nonhe 97.0 0.012 2.6E-07 50.1 11.8 131 81-226 5-137 (156)
7 PRK13456 DNA protection protei 96.5 0.038 8.2E-07 50.2 11.3 98 111-226 49-163 (186)
8 cd01051 Mn_catalase Manganese 96.5 0.12 2.7E-06 45.2 14.1 119 90-221 34-152 (156)
9 cd00907 Bacterioferritin Bacte 96.2 0.45 9.7E-06 40.0 15.8 132 80-224 6-140 (153)
10 cd07908 Mn_catalase_like Manga 96.0 0.22 4.8E-06 42.5 12.8 124 80-215 14-148 (154)
11 cd01041 Rubrerythrin Rubreryth 95.5 0.096 2.1E-06 43.9 8.7 118 89-224 11-129 (134)
12 PRK10635 bacterioferritin; Pro 95.4 0.75 1.6E-05 40.3 14.2 126 80-223 7-140 (158)
13 cd07910 MiaE MiaE tRNA-modifyi 95.2 0.79 1.7E-05 41.5 13.8 128 79-216 18-150 (180)
14 PF02915 Rubrerythrin: Rubrery 95.1 0.1 2.2E-06 42.1 7.2 120 85-215 4-131 (137)
15 PRK08326 ribonucleotide-diphos 94.9 0.47 1E-05 45.7 12.5 108 119-227 101-226 (311)
16 PRK13778 paaA phenylacetate-Co 94.9 0.15 3.3E-06 49.7 9.0 100 119-226 77-183 (314)
17 cd07911 RNRR2_Rv0233_like Ribo 94.8 0.072 1.6E-06 50.2 6.5 106 120-227 85-207 (280)
18 PRK10304 ferritin; Provisional 94.6 0.65 1.4E-05 41.0 11.7 133 80-224 6-144 (165)
19 PF05138 PaaA_PaaC: Phenylacet 94.6 0.19 4.2E-06 47.6 8.8 98 119-226 52-161 (263)
20 TIGR02156 PA_CoA_Oxy1 phenylac 94.6 0.14 3E-06 49.4 7.9 132 79-226 24-165 (289)
21 cd01052 DPSL DPS-like protein, 94.3 1.6 3.5E-05 36.4 12.8 134 80-224 7-147 (148)
22 PF13668 Ferritin_2: Ferritin- 94.2 0.45 9.8E-06 39.6 9.3 128 82-224 4-134 (137)
23 PF00210 Ferritin: Ferritin-li 94.1 0.96 2.1E-05 36.5 10.9 138 82-226 2-141 (142)
24 TIGR00754 bfr bacterioferritin 93.8 2.2 4.8E-05 36.6 13.0 133 80-224 7-141 (157)
25 cd01058 AAMH_B Aromatic and Al 93.6 2.1 4.6E-05 41.3 13.8 141 80-227 101-257 (304)
26 TIGR02158 PA_CoA_Oxy3 phenylac 93.4 0.62 1.3E-05 43.8 9.5 95 119-226 28-135 (237)
27 cd01056 Euk_Ferritin eukaryoti 92.5 3 6.5E-05 36.0 12.0 135 80-224 4-143 (161)
28 cd01057 AAMH_A Aromatic and Al 92.4 3.1 6.7E-05 42.7 13.8 138 80-224 79-230 (465)
29 cd01049 RNRR2 Ribonucleotide R 91.6 1.5 3.2E-05 41.0 9.8 141 76-227 41-207 (288)
30 cd01044 Ferritin_CCC1_N Ferrit 91.5 6.8 0.00015 32.4 12.6 57 84-145 3-59 (125)
31 PF02332 Phenol_Hydrox: Methan 89.7 8.1 0.00018 35.7 12.7 141 79-226 74-229 (233)
32 COG2406 Protein distantly rela 89.4 4 8.7E-05 36.3 9.7 128 78-226 16-160 (172)
33 cd01042 DMQH Demethoxyubiquino 88.9 7.4 0.00016 34.7 11.3 118 91-217 12-134 (165)
34 cd01046 Rubrerythrin_like rubr 88.7 10 0.00022 31.5 11.4 108 84-215 6-113 (123)
35 PF06175 MiaE: tRNA-(MS[2]IO[6 88.6 1.5 3.3E-05 41.3 7.0 132 79-216 27-201 (240)
36 PRK07209 ribonucleotide-diphos 87.7 1.6 3.6E-05 43.0 7.0 138 76-226 92-264 (369)
37 PF00268 Ribonuc_red_sm: Ribon 87.4 7.8 0.00017 36.4 11.0 142 76-227 49-211 (281)
38 COG4445 MiaE Hydroxylase for s 87.0 16 0.00035 33.2 12.1 117 87-215 36-158 (203)
39 PF03232 COQ7: Ubiquinone bios 85.0 17 0.00037 32.6 11.4 118 91-217 14-140 (172)
40 cd01043 DPS DPS protein, ferri 84.8 9.2 0.0002 31.8 9.2 86 119-214 36-132 (139)
41 COG1633 Uncharacterized conser 83.8 19 0.00041 32.3 11.2 128 89-226 34-171 (176)
42 PF12902 Ferritin-like: Ferrit 79.6 10 0.00022 35.3 8.1 58 84-143 1-58 (227)
43 PRK09614 nrdF ribonucleotide-d 79.3 12 0.00026 36.0 8.9 142 76-227 52-215 (324)
44 PRK13967 nrdF1 ribonucleotide- 75.6 14 0.0003 36.0 8.2 99 120-224 95-210 (322)
45 PTZ00211 ribonucleoside-diphos 73.9 15 0.00032 35.7 7.9 144 76-226 62-223 (330)
46 cd00904 Ferritin Ferritin iron 72.5 63 0.0014 27.9 11.0 126 81-215 5-134 (160)
47 PRK13965 ribonucleotide-diphos 70.8 27 0.00059 34.1 9.0 102 119-226 107-224 (335)
48 PLN02492 ribonucleoside-diphos 66.9 87 0.0019 30.3 11.5 143 76-226 51-212 (324)
49 cd01050 Acyl_ACP_Desat Acyl AC 66.3 92 0.002 30.3 11.4 139 80-224 60-205 (297)
50 COG0208 NrdF Ribonucleotide re 63.6 79 0.0017 31.5 10.6 101 117-224 107-235 (348)
51 COG3396 Uncharacterized conser 63.3 80 0.0017 30.5 10.2 127 80-226 20-161 (265)
52 PRK12759 bifunctional gluaredo 58.5 25 0.00054 35.3 6.2 107 119-227 182-299 (410)
53 PF11266 DUF3066: Protein of u 58.4 56 0.0012 30.3 7.8 106 113-226 37-150 (219)
54 cd01048 Ferritin_like_AB2 Unch 52.3 1.2E+02 0.0027 25.5 8.7 116 88-219 9-133 (135)
55 cd01045 Ferritin_like_AB Uncha 52.1 80 0.0017 24.9 7.2 53 79-136 86-138 (139)
56 PRK14983 aldehyde decarbonylas 51.5 45 0.00099 31.1 6.2 106 113-226 47-160 (231)
57 PF07410 Phage_Gp111: Streptoc 47.5 61 0.0013 27.0 5.7 49 93-145 3-58 (106)
58 COG1592 Rubrerythrin [Energy p 44.4 70 0.0015 28.7 6.1 80 119-216 42-121 (166)
59 PRK13966 nrdF2 ribonucleotide- 40.0 2.6E+02 0.0055 27.3 9.8 98 120-223 97-210 (324)
60 COG1528 Ftn Ferritin-like prot 39.4 2.9E+02 0.0063 24.9 9.3 107 79-203 5-121 (167)
61 PF03405 FA_desaturase_2: Fatt 39.4 4E+02 0.0086 26.5 13.1 54 188-268 176-229 (330)
62 cd07908 Mn_catalase_like Manga 37.9 1.7E+02 0.0036 24.7 7.3 53 80-137 102-154 (154)
63 TIGR03225 benzo_boxB benzoyl-C 37.6 3.1E+02 0.0068 28.2 10.1 108 111-232 133-265 (471)
64 PF09537 DUF2383: Domain of un 35.6 2.2E+02 0.0049 22.5 8.4 76 82-165 4-79 (111)
65 PRK12775 putative trifunctiona 34.1 1.2E+02 0.0025 34.2 7.2 123 89-224 870-998 (1006)
66 COG3657 Uncharacterized protei 34.1 96 0.0021 25.7 4.9 45 112-157 8-54 (100)
67 PF13668 Ferritin_2: Ferritin- 32.9 1.4E+02 0.003 24.6 6.0 55 80-139 83-137 (137)
68 cd01050 Acyl_ACP_Desat Acyl AC 32.8 43 0.00094 32.6 3.2 21 120-140 185-205 (297)
69 cd01044 Ferritin_CCC1_N Ferrit 32.7 1.8E+02 0.0039 23.8 6.5 23 116-138 102-124 (125)
70 cd01041 Rubrerythrin Rubreryth 29.9 2.5E+02 0.0055 23.1 7.1 60 79-141 74-134 (134)
71 PF13794 MiaE_2: tRNA-(MS[2]IO 29.6 68 0.0015 29.3 3.7 136 79-227 6-145 (185)
72 COG2193 Bfr Bacterioferritin ( 28.7 4.3E+02 0.0093 23.7 10.6 121 79-214 6-131 (157)
73 TIGR02869 spore_SleB spore cor 25.9 2.1E+02 0.0045 26.0 6.2 84 130-225 16-120 (201)
74 PLN00179 acyl- [acyl-carrier p 25.6 5.6E+02 0.012 26.2 9.6 94 118-232 159-273 (390)
75 PF15641 Tox-MPTase5: Metallop 25.6 1.2E+02 0.0027 24.9 4.1 24 197-225 59-82 (109)
76 PRK09101 nrdB ribonucleotide-d 24.9 2.2E+02 0.0048 28.3 6.7 100 119-226 109-255 (376)
77 PRK09448 DNA starvation/statio 24.2 3.1E+02 0.0067 24.0 6.8 28 116-143 57-84 (162)
78 PF14518 Haem_oxygenas_2: Iron 23.7 88 0.0019 24.6 3.0 26 120-145 2-34 (106)
79 COG2733 Predicted membrane pro 22.2 3.3E+02 0.0071 28.0 7.2 115 94-214 237-364 (415)
80 PHA02891 hypothetical protein; 22.1 71 0.0015 26.7 2.2 22 177-198 11-32 (120)
81 PF02746 MR_MLE_N: Mandelate r 21.8 60 0.0013 26.1 1.8 21 90-113 91-112 (117)
82 KOG3651 Protein kinase C, alph 20.6 3.2E+02 0.007 27.3 6.7 73 112-189 144-216 (429)
83 PF03405 FA_desaturase_2: Fatt 20.5 1E+02 0.0022 30.6 3.3 21 120-140 191-211 (330)
No 1
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=100.00 E-value=3.9e-96 Score=680.54 Aligned_cols=253 Identities=49% Similarity=0.826 Sum_probs=241.2
Q ss_pred HcCCCHHHHHHhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCHhHHHHHHHHHHhhHHH
Q 022031 14 LNTPDPFEKARLGDSVACRWLDGTITQPYNRSLDLPVPDRPARLTNVKLVSPSLMPKLGKAGSLQSRQAIVHSLAHTESW 93 (303)
Q Consensus 14 L~~~dp~~K~~~~~~~~~~~~~g~l~~~~~~~~~~~~p~~P~Rp~~~~lv~P~~~p~r~~~~t~~~ra~lLHaiAHIE~~ 93 (303)
|+++||++|+.+|+.+++.|++|.+....+...+..+|..|+||++|+||+|+++|+|++++|.+||++|||+|||||||
T Consensus 1 L~~~dp~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~rp~~~~lv~p~~~p~r~~~~~~~~r~~llHaiAhIE~~ 80 (253)
T PF04305_consen 1 LNTPDPEEKVALTRELAEKWRAGELQIDDDPPGPAPPPERPGRPEKPELVPPRDVPRRGKLGTPEGRAALLHAIAHIELN 80 (253)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCccccCCCCCCCCCCCCeecChhhcCCCCCCCChhhHHHHHHHhcchHHH
Confidence 78999999999999999999999987754433444458899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhhHHHHHHHhhh
Q 022031 94 AIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHC 173 (303)
Q Consensus 94 AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~a~~T~~dllaRmAvvp~ 173 (303)
|||||||++|||. ++||.+||.||++||.||+|||+||.+||++||++|||||||+|||++|++|++||++|||||||
T Consensus 81 AIdLa~Da~~RF~--~~lP~~f~~D~~~va~dEarHf~ll~~rL~~lG~~yGd~P~h~gLw~~~~~t~~dl~~R~A~vp~ 158 (253)
T PF04305_consen 81 AIDLALDAIYRFH--PNLPREFYDDWLRVADDEARHFRLLRERLEELGSDYGDLPAHDGLWEAAEQTAHDLLARMALVPR 158 (253)
T ss_pred HHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999999992 38999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHHHHhcCCCccccCCCCCCCcccccccchhh
Q 022031 174 VHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCLRSRDPALLRDSLAPPESEAGENVCTIE 253 (303)
Q Consensus 174 vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (303)
|+||||||+||.+++||++.||.+|++||+ |||+|||+||++|+|||+|+|+++|.+|
T Consensus 159 ~~EArGLD~~p~~~~k~~~~gD~~sa~iL~-~I~~DEi~HV~~G~rWf~~~c~~~~~~p--------------------- 216 (253)
T PF04305_consen 159 VLEARGLDVTPFIIEKFRSAGDEESAAILE-IILRDEIGHVAIGNRWFRYLCEQRGLDP--------------------- 216 (253)
T ss_pred HHHhhCCCCCHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHhccccH---------------------
Confidence 999999999999999999999999999999 8999999999999999999999999987
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHhCCCChhhchh
Q 022031 254 ENEEVIRKFHAIVRTHFRGPLKPPFNEVARKAAGFGPQWYEP 295 (303)
Q Consensus 254 ~~~~~~~~f~~lv~~~~~~~lk~pfN~eaR~~AGfs~~~~~~ 295 (303)
+++|+++|+.||.+.+|||||.+||++||||++||+.
T Consensus 217 -----~~~f~~lv~~~~~~~~k~pfN~eaR~~AGfs~~~~~~ 253 (253)
T PF04305_consen 217 -----WETFRELVRQYFRGKLKGPFNEEARLKAGFSEEEYED 253 (253)
T ss_pred -----HHHHHHHHHHhCCCCCCCCCCHHHHHHcCCCHHHhcC
Confidence 8999999999999999999999999999999999974
No 2
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=4.4e-96 Score=666.32 Aligned_cols=264 Identities=41% Similarity=0.696 Sum_probs=245.8
Q ss_pred hHHHHHHHHHHcCCCHHHHHHhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCHhHHHHH
Q 022031 4 KTLVEAALRVLNTPDPFEKARLGDSVACRWLDGTITQPYNRSLDLPVPDRPARLTNVKLVSPSLMPKLGKAGSLQSRQAI 83 (303)
Q Consensus 4 ~~l~~~a~~vL~~~dp~~K~~~~~~~~~~~~~g~l~~~~~~~~~~~~p~~P~Rp~~~~lv~P~~~p~r~~~~t~~~ra~l 83 (303)
++|+..+.++|.+.||.+|+++++.-...|..-.... ......+.+.+||||++|.||+|++|||| .++|.+||+++
T Consensus 3 ~~l~~~~~~al~~~d~~~K~~l~~e~a~~~~~~~~~~--~~p~~~~~~~~~grp~kp~Lv~P~~v~rr-~l~t~~g~aal 79 (268)
T COG2833 3 KSLRGEAEEALYEADPDEKTRLAQENARRWFQSALSA--RSPEDPPIFERPGRPAKPVLVPPTQVPRR-SLNTTHGRAAL 79 (268)
T ss_pred hhHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhh--cCCCCCCCCCCCCCCCCCeecCcccCCcc-cccchhHHHHH
Confidence 5899999999999999999999955555554322222 22233466789999999999999999998 89999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhh
Q 022031 84 VHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKD 163 (303)
Q Consensus 84 LHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~a~~T~~d 163 (303)
||+||||||||||||+|++|||. ++|.+||+||++||.||++||+|+++||++||++|||||+|+|||+|+++|++|
T Consensus 80 lHAiAHIEfNAInLaLDa~~RF~---~~p~~F~~dWm~VA~EE~~HF~Ll~~~L~~LG~~YGDfpaHdgLw~~a~~T~~d 156 (268)
T COG2833 80 LHAIAHIEFNAINLALDAVYRFA---PLPLQFYDDWMRVADEEAKHFRLLRERLKSLGYDYGDFPAHDGLWQMAEATAND 156 (268)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcccccHHHHHHHhhcC
Confidence 99999999999999999999995 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHHHHhcCCCccccCCCCCCCc
Q 022031 164 LLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCLRSRDPALLRDSLAPPES 243 (303)
Q Consensus 164 llaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~lc~~~~~~~~~~~~~~~~~~ 243 (303)
+.+|||||||+|||||||+||.+++|+++.||.++++||+ |||+||||||++|++||+++|+++|+||
T Consensus 157 l~~RmalVprvLEARGLDatP~l~aK~~~~gD~~~~~iLd-IIlrDEigHVaiGn~Wyrflc~r~gldp----------- 224 (268)
T COG2833 157 LLARMALVPRVLEARGLDATPSLRAKLAETGDSEAAAILD-IILRDEIGHVAIGNKWYRFLCARRGLDP----------- 224 (268)
T ss_pred HHHHhhhhhhHHhhccCCCCHHHHHHHHHcCchHHHHHHH-HHHhccccceeechHHHHHHHHhcCCCh-----------
Confidence 9999999999999999999999999999999999999999 8999999999999999999999999998
Q ss_pred ccccccchhhhhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHhCCCChhhchhhhccc
Q 022031 244 EAGENVCTIEENEEVIRKFHAIVRTHFRGPLKPPFNEVARKAAGFGPQWYEPLATKE 300 (303)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~f~~lv~~~~~~~lk~pfN~eaR~~AGfs~~~~~~L~~~~ 300 (303)
..+|++||++|+.+.+|||||..||.+||||+.||+.++..+
T Consensus 225 ---------------~~~FreL~r~y~~~~lkg~~N~~AR~~AGfT~~e~d~i~~~e 266 (268)
T COG2833 225 ---------------AATFRELVRAYFRFILKGPFNIDARAKAGFTQSEYDSIEAFE 266 (268)
T ss_pred ---------------HHHHHHHHHHhCCcccCCcccHHHHHHcCCCHHHHHHHHHHh
Confidence 889999999999999999999999999999999999988654
No 3
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=98.94 E-value=6.9e-09 Score=80.36 Aligned_cols=129 Identities=27% Similarity=0.250 Sum_probs=103.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhh
Q 022031 83 IVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSK 162 (303)
Q Consensus 83 lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~a~~T~~ 162 (303)
.|-.+..+|+.|++.....+.++. ..+...-|.+.+.||.+|+.++.+++..+|......+.....|........
T Consensus 2 ~L~~~~~~E~~a~~~y~~~~~~~~-----~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 76 (130)
T cd00657 2 LLNDALAGEYAAIIAYGQLAARAP-----DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHLLAAYALPKTSD 76 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhcccCCCcc
Confidence 355667799999999999999883 577888999999999999999999999999877666544333444444556
Q ss_pred hHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHH
Q 022031 163 DLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWF 221 (303)
Q Consensus 163 dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf 221 (303)
++...+... ...|..+++.-..+.+++. |..+.+++.. |..||..|+..+.+|+
T Consensus 77 ~~~~~l~~~-~~~E~~~~~~y~~~~~~~~---d~~~~~~~~~-~~~~E~~H~~~~~~~~ 130 (130)
T cd00657 77 DPAEALRAA-LEVEARAIAAYRELIEQAD---DPELRRLLER-ILADEQRHAAWFRKLL 130 (130)
T ss_pred CHHHHHHHH-HHHHHHHHHHHHHHHHhcC---ChHHHHHHHH-HHHHHHHHHHHHHhhC
Confidence 777766666 7899999887777766654 8999999994 7999999999999885
No 4
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=97.48 E-value=0.0014 Score=61.95 Aligned_cols=143 Identities=14% Similarity=0.054 Sum_probs=90.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCCccchhhHH
Q 022031 81 QAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSY-----GALPAHDGLWD 155 (303)
Q Consensus 81 a~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~Y-----Gd~P~H~gLW~ 155 (303)
+.++.-..|+|...++.+.-.++|..-..+.+...+...++...||++|-.|..+.++..|-.+ ...+.-..+=.
T Consensus 80 ~~~~~~~i~~E~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~DE~rH~~mf~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (304)
T PF11583_consen 80 ANYLSQGIWFEQGLVNPAFRMLARDRFPSDPDDDAKRYALTEIADEARHSLMFARAINRTGRRRGLAPLPPPYPPRRLLR 159 (304)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTT-STTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCCCchHHHHH
Confidence 3445566788999999998888875432457888999999999999999999999999999222 22222221111
Q ss_pred HHHhhhhh---HHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCC--hHHHHHHHhhcchhhhhhHHhhhHHHHHHHHhcC
Q 022031 156 SAIATSKD---LLARLAIEHCVHEARGLDVLPTTISRFRNGGD--NETAKLLETVVYPEEITHCAAGVRWFRYLCLRSR 229 (303)
Q Consensus 156 ~a~~T~~d---llaRmAvvp~vlEArGLD~~p~~i~kl~~~GD--~~sa~iL~~iI~~DEI~HV~~G~rWf~~lc~~~~ 229 (303)
...+.... .+..++. -++.|.- +| .+...+.+-++ .-...++. |...||..|+++|..+++..-.+.+
T Consensus 160 ~l~~~~~~~~~~~~~~~~-~lv~Ee~-i~---~~~~~~~~D~~iqP~~r~v~~-iH~~DEaRHi~f~~~~l~~~~~~l~ 232 (304)
T PF11583_consen 160 RLARLLPPWERGLLFFAF-ALVAEEI-ID---AYQREIARDETIQPLVRQVMR-IHVRDEARHIAFAREELRRVWPRLS 232 (304)
T ss_dssp HHHTS-SHHHHHHHHHHH-HHHHHHS-BH---HHHHHHHT-SSS-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHhcccccchHHHHHH-HHHHHHH-HH---HHHHHhhcCCCCChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11111111 1112222 2566654 33 34444544443 23345666 7899999999999999999988776
No 5
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=97.22 E-value=0.0059 Score=49.22 Aligned_cols=117 Identities=21% Similarity=0.135 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCccchhhHHHHH--------hh
Q 022031 90 TESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGS-SYGALPAHDGLWDSAI--------AT 160 (303)
Q Consensus 90 IE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~-~YGd~P~H~gLW~~a~--------~T 160 (303)
+|..|+++......++. -| ..-.=|-+.|.||.+|..++.+++.++|. ...+++.-...+.... ..
T Consensus 9 ~E~~~~~~Y~~~a~~~~----~~-~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (139)
T cd01045 9 MEEEAAEFYLELAEKAK----DP-ELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEPEFKKALES 83 (139)
T ss_pred HHHHHHHHHHHHHhHCC----CH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhhhHHHHHHh
Confidence 78999999888888874 22 56666778999999999999999999972 2222222222222111 11
Q ss_pred hhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHh
Q 022031 161 SKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAA 216 (303)
Q Consensus 161 ~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~ 216 (303)
..++. .+--+.+.+|..+.. .+.+-.+...|....+++.+ |..||..|+..
T Consensus 84 ~~~~~-~~l~~a~~~E~~~~~---~Y~~~~~~~~d~~~~~~~~~-l~~~E~~H~~~ 134 (139)
T cd01045 84 LMDPL-EALRLAIEIEKDAIE---FYEELAEKAEDPEVKKLFEE-LAEEERGHLRL 134 (139)
T ss_pred ccCHH-HHHHHHHHHHHHHHH---HHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHH
Confidence 12222 233455678888875 45555556788899999995 79999999853
No 6
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=97.04 E-value=0.012 Score=50.09 Aligned_cols=131 Identities=18% Similarity=0.172 Sum_probs=90.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCccchhhHHHHH
Q 022031 81 QAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSS--YGALPAHDGLWDSAI 158 (303)
Q Consensus 81 a~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~--YGd~P~H~gLW~~a~ 158 (303)
..+|-...+-|+.|+...+-...-|.. .++| .|-.=+-+.|.+|..|...+.++|..+|.. +..+|.-..-|..
T Consensus 5 ~~~Ln~~~~~El~A~~~Yl~~a~~~~~-~~~~-~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~~~~~-- 80 (156)
T cd01055 5 EKALNEQINLELYSSYLYLAMAAWFDS-KGLD-GFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPSEFES-- 80 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCcccCC--
Confidence 466777788999999999888777753 3566 455555678999999999999999999954 3334322212211
Q ss_pred hhhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHHHH
Q 022031 159 ATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCL 226 (303)
Q Consensus 159 ~T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~lc~ 226 (303)
+.. +--.-+-+|..-...-+.+++..+..||..+...++. |+.||+.|+ +||.-++.
T Consensus 81 -----~~~-~l~~al~~E~~~~~~~~~l~~~A~~~~D~~~~~~l~~-~l~~q~e~~----~~~~~~l~ 137 (156)
T cd01055 81 -----LLE-VFEAALEHEQKVTESINNLVDLALEEKDYATFNFLQW-FVKEQVEEE----ALARDILD 137 (156)
T ss_pred -----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHH-HHHHHHHHH----HHHHHHHH
Confidence 110 1111223444444455567777788899999999995 799999999 77777765
No 7
>PRK13456 DNA protection protein DPS; Provisional
Probab=96.52 E-value=0.038 Score=50.18 Aligned_cols=98 Identities=26% Similarity=0.292 Sum_probs=62.3
Q ss_pred CChhHHHhHHHHHH-HHHHHHHHHHHHHHHhCCC---------------CCCCccch-hhHHHHHhhhhhHHHHHHHhhh
Q 022031 111 MPREFFTDFVKVAQ-DEGRHFTLLAARLEELGSS---------------YGALPAHD-GLWDSAIATSKDLLARLAIEHC 173 (303)
Q Consensus 111 lP~~Fy~Dwl~VA~-DEarHF~Ll~~rL~eLG~~---------------YGd~P~H~-gLW~~a~~T~~dllaRmAvvp~ 173 (303)
+-.+=...+++.+. ||.+|+.+|.+|+.+||.. |.++|... .+=+|... +=...|.||..
T Consensus 49 ~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ls~~~~~~~p~d~tdv~~mL~~--~L~AEr~AI~~- 125 (186)
T PRK13456 49 LEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHDISACPDAYLPENPTDPKEILKV--LLEAERCAIRT- 125 (186)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhhhhcCccccCCCCcchHHHHHHH--HHHHHHHHHHH-
Confidence 43344446677777 9999999999999999953 22333332 22222221 23334555543
Q ss_pred hHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHHHH
Q 022031 174 VHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCL 226 (303)
Q Consensus 174 vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~lc~ 226 (303)
=-.+++-+. ..|..|-+++.. |+.||+.|- .||.-+-.
T Consensus 126 ---------Y~eii~~~~-~kDp~T~~l~~~-IL~dE~eH~----~dl~~lL~ 163 (186)
T PRK13456 126 ---------YTEICDMTA-GKDPRTYDLALA-ILQEEIEHE----AWFSELLG 163 (186)
T ss_pred ---------HHHHHHHHh-cCCccHHHHHHH-HHHHHHHHH----HHHHHHHh
Confidence 334555555 448888888886 899999997 68887754
No 8
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=96.47 E-value=0.12 Score=45.20 Aligned_cols=119 Identities=18% Similarity=0.107 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhhHHHHHH
Q 022031 90 TESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLA 169 (303)
Q Consensus 90 IE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~a~~T~~dllaRmA 169 (303)
=|+.||-..+--.+.+ +...++.+=+..+|.||-.|+.|+.+++..||.+=+..|-..+--. ...|+.+=|-
T Consensus 34 gEl~ai~qYl~q~~~~----~~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g~pw~~~yv~----~~~d~~~~L~ 105 (156)
T cd01051 34 GELSAAMQYLFQSFNF----REDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQGVPWTAAYIQ----SSGNLVADLR 105 (156)
T ss_pred HHHHHHHHHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCCcccC----CCCCHHHHHH
Confidence 6899988776555555 2457899999999999999999999999999976666663221111 1122222211
Q ss_pred HhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHH
Q 022031 170 IEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWF 221 (303)
Q Consensus 170 vvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf 221 (303)
--+..|..... .+.+.++...|....++|.. |..||+.|...=-+++
T Consensus 106 -~ni~aE~~Ai~---~Y~~l~~~~~Dp~v~~~l~~-I~~rE~~H~~~f~~~l 152 (156)
T cd01051 106 -SNIAAESRARL---TYERLYEMTDDPGVKDTLSF-LLVREIVHQNAFGKAL 152 (156)
T ss_pred -HHHHHHHHHHH---HHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 22334444333 25555556679999999995 8999999987533333
No 9
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=96.22 E-value=0.45 Score=40.01 Aligned_cols=132 Identities=17% Similarity=0.109 Sum_probs=80.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc---cchhhHHH
Q 022031 80 RQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALP---AHDGLWDS 156 (303)
Q Consensus 80 ra~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P---~H~gLW~~ 156 (303)
-+..|=..-..|++|+....-..+-|.+ .++ ..+..=+...|.||.+|+..+.+|+.++|...-.-+ +-.+
T Consensus 6 ~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~-~~~-~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~~~~~---- 79 (153)
T cd00907 6 VIEALNKALTGELTAINQYFLHARMLED-WGL-EKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLRIG---- 79 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCcC----
Confidence 3445555557899999988877776731 122 234455567999999999999999999996532111 1111
Q ss_pred HHhhhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHH
Q 022031 157 AIATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYL 224 (303)
Q Consensus 157 a~~T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~l 224 (303)
.|+..=|.. -+-.|.--.+.=+.+++..+..+|..++++++. |+.||..|...=..|+.-+
T Consensus 80 -----~~~~~~l~~-~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~-~~~~e~~h~~~l~~~l~~~ 140 (153)
T cd00907 80 -----EDVPEMLEN-DLALEYEAIAALNEAIALCEEVGDYVSRDLLEE-ILEDEEEHIDWLETQLDLI 140 (153)
T ss_pred -----CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 111111100 012233222333334445566899999999996 7999999986444444444
No 10
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=95.96 E-value=0.22 Score=42.46 Aligned_cols=124 Identities=15% Similarity=0.061 Sum_probs=80.3
Q ss_pred HHHHHHHHHh---hHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhH--
Q 022031 80 RQAIVHSLAH---TESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLW-- 154 (303)
Q Consensus 80 ra~lLHaiAH---IE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW-- 154 (303)
-+.||-..-+ .|+.||...+-..+-.. .--.+...=+.+.|.+|.+|..++.+++..||.. |.....+
T Consensus 14 ~~~~~~~~~~g~~~E~~ai~~Y~y~~~~~~---~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~----p~~~~~~~~ 86 (154)
T cd07908 14 YAELLLDDYAGTNSELTAISQYIYQHLISE---EKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGD----PRYRSSSSD 86 (154)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----Ccchhhccc
Confidence 4566666555 89999987755444332 2235677778899999999999999999999853 2211111
Q ss_pred -----HHH-HhhhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHH
Q 022031 155 -----DSA-IATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCA 215 (303)
Q Consensus 155 -----~~a-~~T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~ 215 (303)
... .....|+.. +--.-+..|..+++.=-.+++ ..+|..+.++|+. |..||..|..
T Consensus 87 ~~~~~~~~~~~~~~~~~~-~L~~~~~~E~~ai~~Y~~~~~---~~~d~~~r~ll~~-I~~eE~~H~~ 148 (154)
T cd07908 87 KFTYWTGKYVNYGESIKE-MLKLDIASEKAAIAKYKRQAE---TIKDPYIRALLNR-IILDEKLHIK 148 (154)
T ss_pred cCCcCCccccCCccCHHH-HHHHHHHHHHHHHHHHHHHHH---HcCCHHHHHHHHH-HHHHHHHHHH
Confidence 000 011123322 333446778877775444444 5689999999995 7999999984
No 11
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=95.54 E-value=0.096 Score=43.86 Aligned_cols=118 Identities=19% Similarity=0.137 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhhHHHHH
Q 022031 89 HTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARL 168 (303)
Q Consensus 89 HIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~a~~T~~dllaRm 168 (303)
.-|+.|+....-...-+.. .++ .++-.-|-..|.+|..|-.++.++|..+|.... .|... |.... +.+
T Consensus 11 ~~E~~a~~~Y~~~a~~a~~-~g~-~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~-~~~~~--~~~~~----~~l--- 78 (134)
T cd01041 11 AGESQARNRYTYFAEKARK-EGY-EQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-GPPIG--IGDTL----ENL--- 78 (134)
T ss_pred HhHHHHHHHHHHHHHHHHH-CCH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-CCCCC--cchHH----HHH---
Confidence 4577777665443332311 122 234445567899999999999999999998876 44332 22111 111
Q ss_pred HHhhhhHhhc-CCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHH
Q 022031 169 AIEHCVHEAR-GLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYL 224 (303)
Q Consensus 169 Avvp~vlEAr-GLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~l 224 (303)
---.-+|.. ..+.=+.+++..+..||..++..++. |+.||..|+ +||.-+
T Consensus 79 -~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~-i~~~E~~H~----~~l~~~ 129 (134)
T cd01041 79 -KAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEA-IAEAEKVHA----ERYKKA 129 (134)
T ss_pred -HHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHH----HHHHHH
Confidence 111223432 33555778889999999999999995 799999998 566654
No 12
>PRK10635 bacterioferritin; Provisional
Probab=95.42 E-value=0.75 Score=40.34 Aligned_cols=126 Identities=15% Similarity=0.050 Sum_probs=83.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCC---hhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCCccch
Q 022031 80 RQAIVHSLAHTESWAIDLSWDIVARFGKQEAMP---REFFTDFVKVAQDEGRHFTLLAARLEELGSSY-----GALPAHD 151 (303)
Q Consensus 80 ra~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP---~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~Y-----Gd~P~H~ 151 (303)
-+..|=..-..|+.||+..+-...=|.+ .+++ ..||. .|.||-+|...+.+|+-.||..- +.+.+-.
T Consensus 7 vi~~LN~~L~~El~Ai~QY~~ha~~~~~-~G~~~la~~~~~----ea~eEm~HA~~l~eRIl~LgG~P~~~~~~~~~~g~ 81 (158)
T PRK10635 7 IINYLNKLLGNELVAINQYFLHARMFKN-WGLMRLNDVEYH----ESIDEMKHADKYIERILFLEGIPNLQDLGKLNIGE 81 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Confidence 3455666666899999999877666631 2232 23443 38999999999999999999853 3333334
Q ss_pred hhHHHHHhhhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHH
Q 022031 152 GLWDSAIATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRY 223 (303)
Q Consensus 152 gLW~~a~~T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~ 223 (303)
.+-++... |+..=.-++.++- ..++-.++.||..|..+++. |+.||-.|...=..|+.-
T Consensus 82 ~v~eml~~---dl~~E~~ai~~y~---------e~i~~a~~~~D~~s~~ll~~-iL~dEe~H~~~le~~l~~ 140 (158)
T PRK10635 82 DVEEMLRS---DLRLELEGAKDLR---------EAIAYADSVHDYVSRDMMIE-ILADEEGHIDWLETELDL 140 (158)
T ss_pred CHHHHHHH---HHHHHHHHHHHHH---------HHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45544432 3333333334333 35666677999999999996 799999998654444443
No 13
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=95.19 E-value=0.79 Score=41.55 Aligned_cols=128 Identities=21% Similarity=0.291 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccch---hhHH
Q 022031 79 SRQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHD---GLWD 155 (303)
Q Consensus 79 ~ra~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~---gLW~ 155 (303)
+--.+|=.=||-|.=|---|+-.+.||++. .+-.......|.||-.||.++.+.|++-|..||-...-. +|-.
T Consensus 18 nl~~iL~DHA~CE~KAA~~A~~L~~rY~~~----~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi~l~~~~~~~Ya~~L~k 93 (180)
T cd07910 18 NLDEILIDHAHCEKKAASSAMSLIFRYPEK----PELVEAMSDLAREELQHFEQVLKIMKKRGIPLGPDSKDPYASGLRK 93 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----HhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH
Confidence 344566666889999988888999999743 566777888999999999999999999999999988773 5655
Q ss_pred HHHhhh-hhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcC-CChHHHHHHHhhcchhhhhhHHh
Q 022031 156 SAIATS-KDLLARLAIEHCVHEARGLDVLPTTISRFRNG-GDNETAKLLETVVYPEEITHCAA 216 (303)
Q Consensus 156 ~a~~T~-~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~-GD~~sa~iL~~iI~~DEI~HV~~ 216 (303)
.+.++. .-++.|+-|-. .-|||+.. --..+... -|.+-++--.. ++.-|.+|...
T Consensus 94 ~vR~~~p~~llD~Llv~a-lIEARScE----RF~lLa~~l~D~eL~~FY~~-Ll~SEarHy~~ 150 (180)
T cd07910 94 LVRKGEPERLLDRLLVAA-LIEARSCE----RFALLAPALPDPELKKFYRG-LLESEARHYEL 150 (180)
T ss_pred HcccCChHHHHHHHHHHH-HHHHHhHH----HHHHHhccCCCHHHHHHHHH-HHHHHhhHHHH
Confidence 544332 34677775555 77999865 22333333 57776666653 67889999754
No 14
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=95.07 E-value=0.1 Score=42.06 Aligned_cols=120 Identities=19% Similarity=0.155 Sum_probs=79.5
Q ss_pred HHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCC----Cccc----hhhHHH
Q 022031 85 HSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGA----LPAH----DGLWDS 156 (303)
Q Consensus 85 HaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd----~P~H----~gLW~~ 156 (303)
-.-.-.|..+.++.....-++.+. + .+.-.=|.+.|.||.+|..++.+.+.++|...-. ..+- ..++..
T Consensus 4 ~~A~~~E~~~~~~Y~~~a~~~~~~-~--p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (137)
T PF02915_consen 4 EMAIKMELEAAKFYRELAEKAKDE-G--PELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEEKVEYSFFPKLEEE 80 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-T--HHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCCCCCHCCCCTCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-c--cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhhhhhhhhcchhhhh
Confidence 334568999999988888888531 2 5678888999999999999999999998642110 0000 011111
Q ss_pred HHhhhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHH
Q 022031 157 AIATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCA 215 (303)
Q Consensus 157 a~~T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~ 215 (303)
... ++. .+.-+-+..|..+.+ .+.+-.+..+|....++++. |..||-.|+.
T Consensus 81 ~~~---~~~-~~l~~a~~~E~~~~~---~Y~~~a~~~~~~~~~~~~~~-l~~~E~~H~~ 131 (137)
T PF02915_consen 81 TDE---NLE-EALEMAIKEEKDAYE---FYAELARKAPDPEIRKLFEE-LAKEEKEHED 131 (137)
T ss_dssp HHH---HHH-HHHHHHHHHHHTHHH---HHHHHHHHTTSHHHHHHHHH-HHHHHHHHHH
T ss_pred hhH---HHH-HHHHHHHHHHHHHHH---HHHHHHHHCCCHHHHHHHHH-HHHHHHHHHH
Confidence 111 222 222223455665544 56666777899999999995 7999999985
No 15
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=94.93 E-value=0.47 Score=45.75 Aligned_cols=108 Identities=15% Similarity=0.090 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCC------ccchhhH-HHH----Hh--hhhhHHHHH---HHhhhhHhhcCCCC
Q 022031 119 FVKVAQDEGRHFTLLAARLEELGSSYGAL------PAHDGLW-DSA----IA--TSKDLLARL---AIEHCVHEARGLDV 182 (303)
Q Consensus 119 wl~VA~DEarHF~Ll~~rL~eLG~~YGd~------P~H~gLW-~~a----~~--T~~dllaRm---Avvp~vlEArGLD~ 182 (303)
....+.+|++|...+...|+.+|....-+ |.-...| +.. .. +..++..++ +.-..++|+-=.=.
T Consensus 101 l~~q~~~EaiH~e~Y~~~le~l~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~iEGi~f~s 180 (311)
T PRK08326 101 LTQFAFEEAKHTEAFRRWFDAVGVTEDLSVYTDDNPSYRQIFYEELPAALNRLSTDPSPENQVRASVTYNHVVEGVLAET 180 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34889999999999999999999876211 1111111 000 00 111122222 23356677643322
Q ss_pred CHHHH-HHHHcCCCh-HHHHHHHhhcchhhhhhHHhhhHHHHHHHHh
Q 022031 183 LPTTI-SRFRNGGDN-ETAKLLETVVYPEEITHCAAGVRWFRYLCLR 227 (303)
Q Consensus 183 ~p~~i-~kl~~~GD~-~sa~iL~~iI~~DEI~HV~~G~rWf~~lc~~ 227 (303)
+=.++ .-+++.|-. .++++++ -|.+||..||.+|..=++.++..
T Consensus 181 gF~~~~~~l~~~~~mpgl~~~i~-~I~RDE~~H~~fg~~l~~~l~~e 226 (311)
T PRK08326 181 GYYAWRKICVTRGILPGLQELVR-RIGDDERRHIAWGTYTCRRLVAA 226 (311)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHc
Confidence 22232 356666644 5788888 58999999999999999999764
No 16
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional
Probab=94.86 E-value=0.15 Score=49.65 Aligned_cols=100 Identities=19% Similarity=0.148 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHHHHh------hh-hhHHHHHHHhhhhHhhcCCCCCHHHHHHHH
Q 022031 119 FVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIA------TS-KDLLARLAIEHCVHEARGLDVLPTTISRFR 191 (303)
Q Consensus 119 wl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~a~~------T~-~dllaRmAvvp~vlEArGLD~~p~~i~kl~ 191 (303)
+..++.||.-|-+++-..+++||..=-+.= ..++.-..+ .. .|- +.+.+....+.+.++ .....|.
T Consensus 77 l~niaqDelGHa~~ly~~aeeLG~~r~e~~--~a~~r~~~~f~n~fe~P~~dw-Adtvvr~~L~D~a~~----~~~~~L~ 149 (314)
T PRK13778 77 LLAKVQDEAGHGLYLYSAAETLGVSREELI--DDLLSGKAKYSSIFNYPTLTW-ADVGVIGWLVDGAAI----MNQVPLC 149 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcHHHH--HHHhcchHHhcccccCCCCCH-HHHHHHHHHHHHHHH----HHHHHHh
Confidence 569999999999999999999987210000 001111111 00 011 112222222222221 2366889
Q ss_pred cCCChHHHHHHHhhcchhhhhhHHhhhHHHHHHHH
Q 022031 192 NGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCL 226 (303)
Q Consensus 192 ~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~lc~ 226 (303)
+..|..-+.|+.+ |+.||-=|++.|..|+..||+
T Consensus 150 ~sSy~plA~~a~K-i~KEe~yH~rhg~~wl~rL~~ 183 (314)
T PRK13778 150 RCSYGPYARAMVR-ICKEESFHQRQGEEILLALAR 183 (314)
T ss_pred cCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999996 799999999999999999997
No 17
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=94.80 E-value=0.072 Score=50.20 Aligned_cols=106 Identities=15% Similarity=0.102 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCc-cchhhHHHHH-----------hhhhhHHHH---HHHhhhhHhhcCCCCCH
Q 022031 120 VKVAQDEGRHFTLLAARLEELGSSYGALP-AHDGLWDSAI-----------ATSKDLLAR---LAIEHCVHEARGLDVLP 184 (303)
Q Consensus 120 l~VA~DEarHF~Ll~~rL~eLG~~YGd~P-~H~gLW~~a~-----------~T~~dllaR---mAvvp~vlEArGLD~~p 184 (303)
...+.+|++|...+...|..+|.. .++. .++-.|.... .+..++..+ .++-..++|+-=+=.+=
T Consensus 85 ~~q~~~EaiH~esYs~~l~tl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~lEGilf~sgF 163 (280)
T cd07911 85 TQFLFEEAKHTDFFRRWLDAVGVS-DDLSDLHTAVYREPFYEALPYAELRLYLDASPAAQVRASVTYNMIVEGVLAETGY 163 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-cchhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999875 1110 0111111110 011111111 22234456652211111
Q ss_pred HHHH-HHHcCC-ChHHHHHHHhhcchhhhhhHHhhhHHHHHHHHh
Q 022031 185 TTIS-RFRNGG-DNETAKLLETVVYPEEITHCAAGVRWFRYLCLR 227 (303)
Q Consensus 185 ~~i~-kl~~~G-D~~sa~iL~~iI~~DEI~HV~~G~rWf~~lc~~ 227 (303)
.++- -+++.| -.-+.++++ -|.+||..||.+|..=|+.+.++
T Consensus 164 ~~~~~~l~~~g~m~g~~~~i~-~I~RDE~~H~~fg~~l~~~l~~e 207 (280)
T cd07911 164 YAWRTICEKRGILPGMQEGIR-RLGDDESRHIAWGTFTCRRLVAA 207 (280)
T ss_pred HHHHHHHhhcCCCcCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1212 355556 456788888 58999999999999999999764
No 18
>PRK10304 ferritin; Provisional
Probab=94.65 E-value=0.65 Score=40.98 Aligned_cols=133 Identities=13% Similarity=0.011 Sum_probs=93.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCccchhhHHHH
Q 022031 80 RQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSS--YGALPAHDGLWDSA 157 (303)
Q Consensus 80 ra~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~--YGd~P~H~gLW~~a 157 (303)
-+..|=.-.+.||.|+.+.+-...=|.. .++| .|=.=+-..+.||-.|...+.++|..+|.. .+++|.-..-|.+.
T Consensus 6 i~~~Ln~qin~El~As~~Yl~ma~~~~~-~gl~-g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p~~~~~s~ 83 (165)
T PRK10304 6 MIEKLNEQMNLELYSSLLYQQMSAWCSY-HTFE-GAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFAEYSSL 83 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCCccccCCH
Confidence 4567777789999999998877665642 4563 344445578999999999999999999986 66765334445443
Q ss_pred Hhhhh-hHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchh---hhhhHHhhhHHHHHH
Q 022031 158 IATSK-DLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPE---EITHCAAGVRWFRYL 224 (303)
Q Consensus 158 ~~T~~-dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~D---EI~HV~~G~rWf~~l 224 (303)
..... ++..-..+.... -.+++.....+|..|...|+. ++.| |..||..=..+++.+
T Consensus 84 ~e~~~~~l~~E~~vt~~i---------~~l~~~A~~~~D~~t~~fl~~-fl~EQveEe~~~~~l~~~l~~~ 144 (165)
T PRK10304 84 DELFQETYKHEQLITQKI---------NELAHAAMTNQDYPTFNFLQW-YVSEQHEEEKLFKSIIDKLSLA 144 (165)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHcCCHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence 33221 222223333333 346777888999999999995 5778 999998877787777
No 19
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid []. These proteins may form part of a dioxygenase complex.; PDB: 3PWQ_K 3PVT_B 1OTK_B 3PW1_B 3PW8_B 3PVR_B 3PVY_B 3Q1G_A 3PF7_B 3PM5_C ....
Probab=94.62 E-value=0.19 Score=47.57 Aligned_cols=98 Identities=24% Similarity=0.271 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh---CC---------CCCCCccchhhHHHHHhhhhhHHHHHHHhhhhHhhcCCCCCHHH
Q 022031 119 FVKVAQDEGRHFTLLAARLEEL---GS---------SYGALPAHDGLWDSAIATSKDLLARLAIEHCVHEARGLDVLPTT 186 (303)
Q Consensus 119 wl~VA~DEarHF~Ll~~rL~eL---G~---------~YGd~P~H~gLW~~a~~T~~dllaRmAvvp~vlEArGLD~~p~~ 186 (303)
...+|.||..|.+++-+.|+++ |. .-+++ -+-.+++.=...-.+...|..++-.+. -.+
T Consensus 52 l~~ia~DelGHAr~ly~ll~el~g~G~~~d~la~~R~~~~~-rn~~l~e~p~~dwa~~v~r~~l~d~~~--------~~~ 122 (263)
T PF05138_consen 52 LANIAQDELGHARLLYRLLEELEGEGRDEDDLAFLRDAREF-RNLLLFEQPNGDWADTVARQFLFDRAG--------KVL 122 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHCCCHHHHHHHHHHHTTCS--SSGGGGS---SHHHHHHHHHHHHHHH--------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHhhcccchh-hhhhhhccCCCCHHHHHHHHHHHHHHH--------HHH
Confidence 5699999999999999999999 31 01122 111122111111123333444443221 236
Q ss_pred HHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHHHH
Q 022031 187 ISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCL 226 (303)
Q Consensus 187 i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~lc~ 226 (303)
...|....|..-++++.+ |+.||--|+..|..|++.+|.
T Consensus 123 l~~l~~ssy~pla~~a~k-~~kEe~yH~~h~~~w~~rL~~ 161 (263)
T PF05138_consen 123 LEALADSSYEPLAAIAAK-ILKEEAYHLRHGEDWLRRLGD 161 (263)
T ss_dssp HHHHTT-SBHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 778888999999999997 799999999999999999985
No 20
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=94.61 E-value=0.14 Score=49.41 Aligned_cols=132 Identities=17% Similarity=0.087 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHh--HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcc--ch---
Q 022031 79 SRQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTD--FVKVAQDEGRHFTLLAARLEELGSSYGALPA--HD--- 151 (303)
Q Consensus 79 ~ra~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~D--wl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~--H~--- 151 (303)
..+.+|-.+||-|+-.. +|++.=-+.-..-..| ...++.||.-|-+++-.++++||..=-|.=. +.
T Consensus 24 ~L~r~l~~~AdsEli~a-------~r~~eW~~~AP~LeediAl~niaqDelGHar~ly~~a~~LG~~r~ed~~a~~r~~~ 96 (289)
T TIGR02156 24 TLIRQISQHAHSEIVGM-------LPEGNWITRAPTLKRKLILMAKVQDEAGHGLYLYAAAETLGVSREELLDALLTGKA 96 (289)
T ss_pred HHHHHHHHHhhHHHHhc-------cccccHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcChH
Confidence 34666667777666543 4554200111222333 5689999999999999999999872100000 00
Q ss_pred ---hhHHHHHhhhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHHHH
Q 022031 152 ---GLWDSAIATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCL 226 (303)
Q Consensus 152 ---gLW~~a~~T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~lc~ 226 (303)
++++.=..+-.+...|-.++ .+.+ -.....|.+..|..-++|+.+ |+.||-=|++.|..|+..||+
T Consensus 97 ~f~nl~e~P~~dwA~tivr~~l~----D~~~----~~~~~~L~~SSy~plA~ia~K-i~KEe~yH~rh~~~wl~rL~~ 165 (289)
T TIGR02156 97 KYSSIFNYPTLTWADIGVIGWLV----DGAA----IMNQTPLCRCSYGPYSRAMVR-ICKEESFHQRQGYEIMLTLAR 165 (289)
T ss_pred hhccchhCCCCCHHHHHHHHHHH----HHHH----HHHHHHHhcCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHc
Confidence 01111001111222222222 2222 123678889999999999996 799999999999999999996
No 21
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=94.25 E-value=1.6 Score=36.40 Aligned_cols=134 Identities=19% Similarity=0.153 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHHH--
Q 022031 80 RQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSA-- 157 (303)
Q Consensus 80 ra~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~a-- 157 (303)
-+..|=..-..|+.|+....-.-+=+.+ .+. ..+..=+-+.+.||..|...+.+|+..||...=.-+ ..+...+
T Consensus 7 ~~~~Ln~~la~e~~~~~~y~~~~~~~~g-~~f-~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~--~~~~~~~~~ 82 (148)
T cd01052 7 LIELLNKAFADEWLAYYYYTILAKHVKG-PEG-EGIKEELEEAAEEELNHAELLAERIYELGGTPPRDP--KDWYEISGC 82 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCh--HHHHHHhcc
Confidence 3444555555677777665444442311 111 245556668899999999999999999997632211 0011100
Q ss_pred -----HhhhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHH
Q 022031 158 -----IATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYL 224 (303)
Q Consensus 158 -----~~T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~l 224 (303)
.....++..-+-. -+..|......--..++... .||..|.++|+. |+.||..|+ .||+.+
T Consensus 83 ~~~~~~~~~~~~~~~l~~-~~~~e~~~i~~~~~~~~~a~-~~D~~t~~ll~~-~l~de~~h~----~~~~~~ 147 (148)
T cd01052 83 KCGYLPPDPPDVKGILKV-NLKAERCAIKVYKELCDMTH-GKDPVTYDLALA-ILNEEIEHE----EDLEEL 147 (148)
T ss_pred cccCCCCCCccHHHHHHH-HHHHHHHHHHHHHHHHHHHc-CCChHHHHHHHH-HHHHHHHHH----HHHHhh
Confidence 0001111111111 11233333332233344333 399999999995 799999998 466543
No 22
>PF13668 Ferritin_2: Ferritin-like domain
Probab=94.21 E-value=0.45 Score=39.62 Aligned_cols=128 Identities=27% Similarity=0.324 Sum_probs=85.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhcCCC---CCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHHHH
Q 022031 82 AIVHSLAHTESWAIDLSWDIVARFGKQ---EAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAI 158 (303)
Q Consensus 82 ~lLHaiAHIE~~AIdLa~Dav~RF~~~---~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~a~ 158 (303)
.+|--....|+.+++....++.+|... ..++..-+.=+-+++.+|..|...|++.|. |...=.-|.-+.-.+. .
T Consensus 4 ~iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~~~~~~~~~~~~~-~ 80 (137)
T PF13668_consen 4 DILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIADQEQGHVDFLQAALE--GGRPVPPPAYDFPFDP-F 80 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCccccccCC-C
Confidence 456667789999999999999987311 247777788888999999999999999997 3332111111110011 1
Q ss_pred hhhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHH
Q 022031 159 ATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYL 224 (303)
Q Consensus 159 ~T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~l 224 (303)
.+..+++ ++ -+++|.-|...-..+...+ .|.....++.. |...|..|.+ |++.+
T Consensus 81 ~~~~~~L-~~---A~~~E~~~~~~Y~g~~~~~---~~~~~~~~~~~-i~~~Ea~H~~----~ir~l 134 (137)
T PF13668_consen 81 TDDASFL-RL---AYTLEDVGVSAYKGAAPQI---EDPELKALAAS-IAGVEARHAA----WIRNL 134 (137)
T ss_pred CCHHHHH-HH---HHHHHHHHHHHHHHHHHHc---CCHHHHHHHHH-HHHHHHHHHH----HHHHH
Confidence 1222333 23 4578888887666666544 47777888885 7999999985 56554
No 23
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=94.13 E-value=0.96 Score=36.52 Aligned_cols=138 Identities=20% Similarity=0.132 Sum_probs=88.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHHHHh--
Q 022031 82 AIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIA-- 159 (303)
Q Consensus 82 ~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~a~~-- 159 (303)
..|=...+.|+.++...+-..+-|.+ .++| .+-.=+-+.+.+|..|+..+.+|+..+|..--.-+. -+.....
T Consensus 2 ~~Ln~~l~~e~~~~~~y~~~~~~~~~-~~~~-~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~---~~~~~~~~~ 76 (142)
T PF00210_consen 2 EALNEQLALELQASQQYLNMHWNFDG-PNFP-GLAKFFQDQAEEEREHADELAERILMLGGKPSGSPV---EIPEIPKPP 76 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-TTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHH---HHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CCch-hhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHH---Hhhhhhccc
Confidence 34555667788888888777666631 2222 222333467889999999999999999962111111 0110100
Q ss_pred hhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHHHH
Q 022031 160 TSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCL 226 (303)
Q Consensus 160 T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~lc~ 226 (303)
...|+..-|... +-.|....+.--.+++.....||..+.++++. +..||..|+..=..|+..+++
T Consensus 77 ~~~~~~~~l~~~-l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~~-~l~~~~~~~~~l~~~l~~l~~ 141 (142)
T PF00210_consen 77 EWTDPREALEAA-LEDEKEIIEEYRELIKLAEKEGDPETADFLDE-FLEEEEKHIWMLQAHLTNLKR 141 (142)
T ss_dssp SSSSHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhc
Confidence 001333333222 34566666666678888888899999999985 799999999988888888764
No 24
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=93.78 E-value=2.2 Score=36.56 Aligned_cols=133 Identities=17% Similarity=0.049 Sum_probs=82.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCccchhhHHHH
Q 022031 80 RQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSS--YGALPAHDGLWDSA 157 (303)
Q Consensus 80 ra~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~--YGd~P~H~gLW~~a 157 (303)
-+.+|=..-.-|++|+-..+-..+=+ .+.+++ ++-.-+...|.||..|..++.+|+.++|.. +..+|....
T Consensus 7 ~~~~LN~~l~~E~~a~~~Y~~~~~~~-~~~~~~-g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~~~----- 79 (157)
T TIGR00754 7 VIQHLNKQLTNELTAINQYFLHARMQ-KNWGLK-ELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKLRI----- 79 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCCCC-----
Confidence 45666667778999998865543333 123433 222234688999999999999999999985 333332221
Q ss_pred HhhhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHH
Q 022031 158 IATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYL 224 (303)
Q Consensus 158 ~~T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~l 224 (303)
..|+..-+- .-+-.|....+.--..++.....||..|..+|+. |+.||..|...=..|+.-+
T Consensus 80 ---~~~~~e~l~-~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~ll~~-~i~eee~h~~~l~~~l~~~ 141 (157)
T TIGR00754 80 ---GETVREMLE-ADLALELDVLNRLKEAIAYAEEVRDYVSRDLLEE-ILEDEEEHIDWLETQLELI 141 (157)
T ss_pred ---CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 112221111 1123344444433345555567899999999995 7999999986555555544
No 25
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit B (AAMH_B). Subunit B (beta) of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds; the beta-subunit lacks the C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphthol. Both enzyme systems consis
Probab=93.58 E-value=2.1 Score=41.32 Aligned_cols=141 Identities=16% Similarity=0.048 Sum_probs=104.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc--------cch
Q 022031 80 RQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALP--------AHD 151 (303)
Q Consensus 80 ra~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P--------~H~ 151 (303)
-...+=.+.|.|+.|.--. =.+.|++ .-...-.-.+=.+.||.||-.++.-+...|+-.|+++. .++
T Consensus 101 l~~~l~p~~~~E~ga~~~~-a~~~r~~----~~~~i~n~~~~qa~D~lR~aQ~~~~~~~~l~~~~~~~~~~~~k~~W~~d 175 (304)
T cd01058 101 LARYLGPLRHVEHGLQMAN-AYVAQYA----PSTTITNAAAFQAMDKLRIAQDIAYRGLELDGNTPGFDGDAAKEAWEED 175 (304)
T ss_pred HHHHHhhHHHHHHHHHHHH-HHHHhhc----chHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCCCchHHHHHHhcC
Confidence 3445567888888765333 3456773 45566677777899999999999999999999999983 345
Q ss_pred hhHHHHHhhh------hhHHHHHHHhhhhHhhc--CCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHH
Q 022031 152 GLWDSAIATS------KDLLARLAIEHCVHEAR--GLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRY 223 (303)
Q Consensus 152 gLW~~a~~T~------~dllaRmAvvp~vlEAr--GLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~ 223 (303)
-.|+-+.+.- .|...=+-.+.+|+|.. +|=..+ +.+-...+||..+..++. -|..||-.|-+.|.-=|+.
T Consensus 176 p~Wq~~R~~~E~~~~~~Dw~E~~va~nlv~e~l~~~l~~~~-~~~~Aa~nGD~~t~~l~~-s~q~d~~Rh~~~~~alvk~ 253 (304)
T cd01058 176 PAWQGLRELVEKLLVTYDWGEAFVAQNLVFDPLVGELVRRE-LDRLAASNGDTLTPLLTE-FMLDDAQRHRRWTDALVKT 253 (304)
T ss_pred chhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCchhHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 5666553322 45566667778888862 333333 567777899999999999 5899999999999999999
Q ss_pred HHHh
Q 022031 224 LCLR 227 (303)
Q Consensus 224 lc~~ 227 (303)
++++
T Consensus 254 l~~~ 257 (304)
T cd01058 254 AAED 257 (304)
T ss_pred HHcc
Confidence 9886
No 26
>TIGR02158 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=93.36 E-value=0.62 Score=43.75 Aligned_cols=95 Identities=16% Similarity=0.161 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchh-hHHHHHhh------------hhhHHHHHHHhhhhHhhcCCCCCHH
Q 022031 119 FVKVAQDEGRHFTLLAARLEELGSSYGALPAHDG-LWDSAIAT------------SKDLLARLAIEHCVHEARGLDVLPT 185 (303)
Q Consensus 119 wl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~g-LW~~a~~T------------~~dllaRmAvvp~vlEArGLD~~p~ 185 (303)
...++.||.-|.+++-+++++||.. | ..+- ++....+- -.+.+.|..+ +.+-+ -.
T Consensus 28 lanialD~lGhAr~~y~~a~el~g~--~--ed~La~~R~~~~frn~~l~e~P~gdwa~tv~r~~l----~d~~~----~~ 95 (237)
T TIGR02158 28 LANIALDLLGHARMFLSLAGQLGGG--D--EDTLAFFRDEAEFRNLRLTELPNGDFALTIARQFL----YDAYK----VL 95 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC--C--HHHHHHhcChHHhhhhHHHhCCCCCHHHHHHHHHH----HHHHH----HH
Confidence 4689999999999999999999753 2 1111 11111111 1111222222 22222 12
Q ss_pred HHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHHHH
Q 022031 186 TISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCL 226 (303)
Q Consensus 186 ~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~lc~ 226 (303)
..+.|.+..|..-++|..| |..||--|+..|..|+..+|+
T Consensus 96 ~l~~L~~ss~~pla~ia~K-~~kEe~yH~~h~~~w~~rL~~ 135 (237)
T TIGR02158 96 LLEALTQSRDVPLAAIAAK-ALKEARYHLQHAKTWLERLGL 135 (237)
T ss_pred HHHHHHhCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 4778999999999999997 699999999999999999986
No 27
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=92.55 E-value=3 Score=36.02 Aligned_cols=135 Identities=18% Similarity=0.166 Sum_probs=90.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCCC--CCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCccch-hhH
Q 022031 80 RQAIVHSLAHTESWAIDLSWDIVARFGKQE--AMPREFFTDFVKVAQDEGRHFTLLAARLEELGSS--YGALPAHD-GLW 154 (303)
Q Consensus 80 ra~lLHaiAHIE~~AIdLa~Dav~RF~~~~--~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~--YGd~P~H~-gLW 154 (303)
-...|....+.|+.|+...+-...=|.+ . ++| .|-.=+-..|.||-.|...+.+|+..+|.. +..+|.-. .-|
T Consensus 4 i~~~Ln~~i~~El~as~~Yl~~a~~~~~-~~~~l~-g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~~~~~ 81 (161)
T cd01056 4 CEAALNKQINLELNASYVYLSMAAYFDR-DDVALP-GFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPEKDEW 81 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc-ccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCCccc
Confidence 3567888999999999999887776743 3 344 344445578999999999999999999985 66766665 344
Q ss_pred HHHHhhhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHH
Q 022031 155 DSAIATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYL 224 (303)
Q Consensus 155 ~~a~~T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~l 224 (303)
....+.. -.-+-+|..--..--.+++-.++.+|..+...|+.-++.|++.|++.=..+++.+
T Consensus 82 ~~~~e~l--------~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~~fl~eQ~e~~~~~~~~l~~l 143 (161)
T cd01056 82 GSGLEAL--------ELALDLEKLVNQSLLDLHKLASEHNDPHLADFLESEFLEEQVESIKKLAGYITNL 143 (161)
T ss_pred CCHHHHH--------HHHHHHHHHHHHHHHHHHHHHhHcCCHhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3332211 1111223322222223555566679999999999426889999987655555555
No 28
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=92.44 E-value=3.1 Score=42.69 Aligned_cols=138 Identities=17% Similarity=0.160 Sum_probs=97.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchh------h
Q 022031 80 RQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDG------L 153 (303)
Q Consensus 80 ra~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~g------L 153 (303)
-...+=++.|.|+.|.--. =.+.|+. .-..-..-.+=.+.||.||..+..-++.+|.-.|-.|.--.- .
T Consensus 79 Lk~~~~a~~~~Ey~a~~~~-a~~~R~a----~s~~irn~~~~qa~DelRhaQ~~~~~~~~l~k~~~GFd~~~~~~~~~~~ 153 (465)
T cd01057 79 MKLFLGAITPGEYAAVRGM-AMLGRFA----PAAELRNGYLMQMLDELRHTQIQLYLPHYYAKNYAGFDWAQKAFHGNWY 153 (465)
T ss_pred HHHHhccccHHHHHHHHHH-HHHHhhc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHhhCcH
Confidence 3455667888999888555 3347773 334455666677899999999999999999888855542211 2
Q ss_pred HHHHHhh------hhhHHHHHHHhhhhHhh--cCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHH
Q 022031 154 WDSAIAT------SKDLLARLAIEHCVHEA--RGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYL 224 (303)
Q Consensus 154 W~~a~~T------~~dllaRmAvvp~vlEA--rGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~l 224 (303)
|..+.+. ..|..+-+..+.+|+|. -+|=.. .+++--..+||..+..++.. |..||-.|.+.|.-=+..+
T Consensus 154 ~~~~R~~~ed~~~t~D~~E~~valnlvfE~~ftnl~~~-~~~~~Aa~nGD~~tptv~~S-~QsDe~Rh~~~g~~ll~~l 230 (465)
T cd01057 154 AGAAKRFFFDGFITGDAVEAALALQFVFETAFTNLLFV-ALASDAAANGDYATPTVFLS-IQSDEARHMANGYPTLVLL 230 (465)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhHHHhhhHHHHH-HHHHHHHHcCChhhHHHHHH-HHHHHHHHHHhHHHHHHHH
Confidence 2222111 25777778888999997 223223 34666678999999999984 6899999999999999444
No 29
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=91.65 E-value=1.5 Score=41.00 Aligned_cols=141 Identities=19% Similarity=0.114 Sum_probs=84.0
Q ss_pred CHhHHHHHHHHHHh---hHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchh
Q 022031 76 SLQSRQAIVHSLAH---TESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDG 152 (303)
Q Consensus 76 t~~~ra~lLHaiAH---IE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~g 152 (303)
+..-|-.+.|.++= .|..--+.-...+.++. .- .+...=....+.+|+.|-..+..-|..+|..= --+.
T Consensus 41 ~~~er~~~~~~la~~~~~d~~v~~~~~~~~~~~~---~~-~e~~~~~~~q~~~E~iH~e~Ys~il~~l~~~~----e~~~ 112 (288)
T cd01049 41 TEAERHFIKRVLAFLAALDSIVGENLVELFSRHV---QI-PEARAFYGFQAFMENIHSESYSYILDTLGKDE----ERDE 112 (288)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHc---Ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc----cHHH
Confidence 55667788887753 22222222222233331 11 23333344788999999999999999998641 1122
Q ss_pred hHHHHHhhhh----------------------hHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCCh-HHHHHHHhhcchh
Q 022031 153 LWDSAIATSK----------------------DLLARLAIEHCVHEARGLDVLPTTISRFRNGGDN-ETAKLLETVVYPE 209 (303)
Q Consensus 153 LW~~a~~T~~----------------------dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~-~sa~iL~~iI~~D 209 (303)
++.... +.. ++..+++.. ..+|+-=+=.+=.++-.|.+.|-. ..+++++ .|.+|
T Consensus 113 ~~~~~~-~~~~l~~k~~~~~~~~~~~~~~~~~~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~g~m~g~~~~i~-~I~RD 189 (288)
T cd01049 113 LFEAIE-TDPALKKKADWILRWYDNLDDNTKESFAERLVAF-AILEGIFFYSGFAAIFWLARRGKMPGLAEIIE-LISRD 189 (288)
T ss_pred HHHHHh-cCHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCccchHHHhH-HHHcc
Confidence 222211 112 234344333 566655444444455566666654 4467777 68999
Q ss_pred hhhhHHhhhHHHHHHHHh
Q 022031 210 EITHCAAGVRWFRYLCLR 227 (303)
Q Consensus 210 EI~HV~~G~rWf~~lc~~ 227 (303)
|..|+.+|..=++.+.++
T Consensus 190 E~~H~~~~~~~~~~l~~~ 207 (288)
T cd01049 190 ESLHGDFACLLIRELLNE 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999875
No 30
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=91.54 E-value=6.8 Score=32.37 Aligned_cols=57 Identities=19% Similarity=0.150 Sum_probs=43.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 022031 84 VHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYG 145 (303)
Q Consensus 84 LHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YG 145 (303)
+...-.+|.++..+.....-.-. ..+-..=|...|.+|.+|...+.+.+.++|...-
T Consensus 3 ~~~~~~~E~~~~~~Y~~la~~~~-----~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~ 59 (125)
T cd01044 3 LRKFQKDEITEAAIYRKLAKREK-----DPENREILLKLAEDERRHAEFWKKFLGKRGVPPP 59 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 34455688888887766666553 2236666789999999999999999999987653
No 31
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1.14.13.7 from EC) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (1.14.13.25 from EC) is responsible for the initial oxygenation of methane to methanol in methanotrophs. It also catalyses the monohydroxylation of a variety of unactivated alkenes, alicyclic, aromatic and heterocyclic compounds. Also included in this family is toluene-4-monooxygenase system protein A (1.14.13 from EC), which hydroxylates toluene to form P-cresol.; GO: 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 3N20_B 3RNA_B 3N1X_B 3RNC_B 3RNG_B 3RNF_B 3N1Z_B 3RN9_B 3N1Y_B 3RNB_B ....
Probab=89.73 E-value=8.1 Score=35.70 Aligned_cols=141 Identities=22% Similarity=0.164 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccc-h------
Q 022031 79 SRQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAH-D------ 151 (303)
Q Consensus 79 ~ra~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H-~------ 151 (303)
.-...+=.+.|.|+.|.-... .+.||+ .......--+=.+.||.||...+.-++.++--.|.++-.. .
T Consensus 74 ~l~~~~~~~~~~E~ga~~~~a-~~~r~~----~~~~i~n~~~f~a~DelR~~q~~~~~~~~~~~~~~~~~~~~k~~w~~~ 148 (233)
T PF02332_consen 74 FLKRHLGPLRHAEYGAQMASA-YIARFA----PGTAIRNAATFQAMDELRHAQRQALLLKELAGAYPDFAGAAKEAWLND 148 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHH-----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCSCCCTHHHHHHS
T ss_pred HHHHHcCCcchHHHHHHHHHH-HHHhhc----CcHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhCcccChHHHHHHhhC
Confidence 456677889999998875553 668884 5566666667789999999999999999996666665411 2
Q ss_pred hhHHHHHhhhh------hHHHHHHHhhhhHhhc--CCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHH
Q 022031 152 GLWDSAIATSK------DLLARLAIEHCVHEAR--GLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRY 223 (303)
Q Consensus 152 gLW~~a~~T~~------dllaRmAvvp~vlEAr--GLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~ 223 (303)
-.|+.+.+..+ |...=+..+.+|+|.- +| +...+.+.....||..+..++. -|..||-.|.+.|.-=|+.
T Consensus 149 p~wq~~R~~vE~~~~~~Dw~E~~va~nlv~e~l~~~l-~~~~~~~~A~~nGD~~~~~l~~-~~q~d~~r~~~~~~al~~~ 226 (233)
T PF02332_consen 149 PAWQPLRRLVEDLLVTYDWFEAFVALNLVFEPLFTNL-LFVEFDRLAAANGDFLTPTLTS-SIQSDEARHMRWGDALFKM 226 (233)
T ss_dssp HHHHHHHHHHHHHTTSSSHHHHHHHHHTTHHHHHHHH-HHHHHHHHHHHTTTHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccchHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 24554444333 3344444466666652 11 1112356677899999999999 5799999999999999998
Q ss_pred HHH
Q 022031 224 LCL 226 (303)
Q Consensus 224 lc~ 226 (303)
+.+
T Consensus 227 ~~~ 229 (233)
T PF02332_consen 227 ALE 229 (233)
T ss_dssp HHC
T ss_pred HHh
Confidence 865
No 32
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=89.42 E-value=4 Score=36.29 Aligned_cols=128 Identities=27% Similarity=0.367 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHH-HHHHHHHHHHHHhCCCCCCCccc-hhhHH
Q 022031 78 QSRQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEG-RHFTLLAARLEELGSSYGALPAH-DGLWD 155 (303)
Q Consensus 78 ~~ra~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEa-rHF~Ll~~rL~eLG~~YGd~P~H-~gLW~ 155 (303)
+.-+.+|-+-+--|+-+- .--++.||.- .+|--+--.-++++|.+|- +||.|+..||.+||. |+|-- .-||+
T Consensus 16 ~kli~~Llka~AaE~tt~--YYYtilr~~l-~Gle~e~~keiae~Ar~E~r~H~e~i~~Ri~elg~---~~Prd~~~l~d 89 (172)
T COG2406 16 DKLIELLLKAAAAEWTTY--YYYTILRYAL-KGLEGEGIKEIAEEAREEDRKHFELIAPRIYELGG---DLPRDMKKLHD 89 (172)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCchhHHHHHh
Confidence 344555555555565443 2335567742 4588888889999999886 599999999999994 44432 12333
Q ss_pred HHH-------hhhhhHHHHHHHh--------hhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHH
Q 022031 156 SAI-------ATSKDLLARLAIE--------HCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRW 220 (303)
Q Consensus 156 ~a~-------~T~~dllaRmAvv--------p~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rW 220 (303)
-.- +--.|+..-++++ --+-|=.++ ....|..+-++-+. |++|||.|- -|
T Consensus 90 ISgC~~a~LPedp~D~~~~l~vlv~AE~CAir~ykeic~~----------T~GkDprTyeLa~~-IL~eEi~hr----~~ 154 (172)
T COG2406 90 ISGCKPAYLPEDPYDIDEILAVLVKAERCAIRAYKEICNL----------TAGKDPRTYELAEA-ILREEIEHR----TW 154 (172)
T ss_pred hcCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHcc----------ccCCCcchHHHHHH-HHHHHHHHH----HH
Confidence 210 0012333222221 112232222 24468899888884 899999995 58
Q ss_pred HHHHHH
Q 022031 221 FRYLCL 226 (303)
Q Consensus 221 f~~lc~ 226 (303)
|-.+-.
T Consensus 155 ~~~ll~ 160 (172)
T COG2406 155 FLELLG 160 (172)
T ss_pred HHHHhc
Confidence 877743
No 33
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=88.92 E-value=7.4 Score=34.68 Aligned_cols=118 Identities=18% Similarity=0.164 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhhHH---HH
Q 022031 91 ESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLL---AR 167 (303)
Q Consensus 91 E~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~a~~T~~dll---aR 167 (303)
|+.|+.+.-=-+.-+. + ..-..-.-+.+.+|.+|+.+++++|.++|++-= +=+-||..+--.-.-+. .+
T Consensus 12 E~gA~~IY~gQ~~~~~---~--~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps---~l~PlW~~~gf~lG~~tal~G~ 83 (165)
T cd01042 12 EVGAVRIYRGQLAVAR---D--PAVRPLIKEMLDEEKDHLAWFEELLPELGVRPS---LLLPLWYVAGFALGALTALLGK 83 (165)
T ss_pred hHHHHHHHHHHHHHhC---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHhhCh
Confidence 6666655533333332 1 333444557788999999999999999998742 33457755433221111 11
Q ss_pred HHHhhhhH--hhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhh
Q 022031 168 LAIEHCVH--EARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAG 217 (303)
Q Consensus 168 mAvvp~vl--EArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G 217 (303)
=+.+-++- |--=.+.=...+++|...+|.++.++|++ +..||+.|-..+
T Consensus 84 ~~a~~~~~avE~~V~~Hy~~ql~~L~~~~d~~l~~~l~~-~r~DE~~H~d~A 134 (165)
T cd01042 84 KAAMACTAAVETVVEEHYNDQLRELPAQPDKELRAIIEQ-FRDDELEHADIA 134 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-HHHHHHHHHHHH
Confidence 11111111 11001111234555555569999999996 699999998776
No 34
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=88.74 E-value=10 Score=31.53 Aligned_cols=108 Identities=13% Similarity=0.184 Sum_probs=70.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhh
Q 022031 84 VHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKD 163 (303)
Q Consensus 84 LHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~a~~T~~d 163 (303)
|=.-..-|+.|.........-.. ..++|. +-.=|-..|.+|..|...+.+.| |.+| ..+.++.+
T Consensus 6 L~~a~~~E~~a~~~Y~~~a~~a~-~eG~~~-~A~~f~~~a~eE~~HA~~~~~~l-------~~i~--~~~~~~le----- 69 (123)
T cd01046 6 LEANFKGETTEVGMYLAMARVAQ-REGYPE-VAEELKRIAMEEAEHAARFAELL-------GKVS--EDTKENLE----- 69 (123)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH-HCCCHH-HHHHHHHHHHHHHHHHHHHHHHH-------hcCc--ccHHHHHH-----
Confidence 33445678888866655433332 134543 44445578999999999999866 5555 22222222
Q ss_pred HHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHH
Q 022031 164 LLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCA 215 (303)
Q Consensus 164 llaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~ 215 (303)
.++-+=..+.. .=|.+++..+..||..++..|+. |..+|-.|+.
T Consensus 70 ----~a~~~E~~~~~---~~~~~~~~A~~egd~~~~~~~~~-~~~~E~~H~~ 113 (123)
T cd01046 70 ----MMLEGEAGANE---GKKDAATEAKAEGLDEAHDFFHE-AAKDEARHGK 113 (123)
T ss_pred ----HHHHhHHHHHH---hHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHH
Confidence 22223233333 24789999999999999999995 7999999984
No 35
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=88.58 E-value=1.5 Score=41.34 Aligned_cols=132 Identities=17% Similarity=0.250 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCCC-----CCCh-hHHH---------------------------------hH
Q 022031 79 SRQAIVHSLAHTESWAIDLSWDIVARFGKQE-----AMPR-EFFT---------------------------------DF 119 (303)
Q Consensus 79 ~ra~lLHaiAHIE~~AIdLa~Dav~RF~~~~-----~lP~-~Fy~---------------------------------Dw 119 (303)
+-..+|=.=||-|.-|---|.-.+.||+... =+++ ..|. ..
T Consensus 27 nl~~lL~DHa~CE~KAA~tAm~li~rY~~~~~~~~~ll~~~~py~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~eLv~~M 106 (240)
T PF06175_consen 27 NLPTLLIDHANCEKKAAQTAMSLIRRYAVDKESGQALLAWLKPYEDFVYRKDGDIQKNQLSKSLQPKSHYPEKEELVDKM 106 (240)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHTT---------------------------------------------HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHH
Confidence 4456777778999999999999999997311 1232 3333 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCccchh---hHHHHHhh-hhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCC
Q 022031 120 VKVAQDEGRHFTLLAARLEELGSSYGALPAHDG---LWDSAIAT-SKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGD 195 (303)
Q Consensus 120 l~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~g---LW~~a~~T-~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD 195 (303)
+..|.||-.||.++.+.|++-|..||-...-.+ |-..+.+. ..-++.||-|-. .-||||..- -+.+...=|
T Consensus 107 s~LarEEL~HFeqVl~im~~RGi~l~~~~~d~Ya~~L~k~vR~~ep~~lvDrLLv~A-lIEARSCER----F~lLa~~lD 181 (240)
T PF06175_consen 107 SRLAREELHHFEQVLEIMKKRGIPLGPDRKDRYAKGLRKHVRKGEPERLVDRLLVGA-LIEARSCER----FALLAEHLD 181 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---------SHHHHHHTTS-SSTTHHHHHHHHHHH-HHHHHHHHH----HHHHGGGS-
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhccCCchHhHHHHHHHHH-hHhhhhHHH----HHHHHHhhC
Confidence 678999999999999999999999998776553 43333322 234667775555 889998642 222222227
Q ss_pred hHHHHHHHhhcchhhhhhHHh
Q 022031 196 NETAKLLETVVYPEEITHCAA 216 (303)
Q Consensus 196 ~~sa~iL~~iI~~DEI~HV~~ 216 (303)
.+-++--.. ++.-|.+|...
T Consensus 182 ~eL~~FY~~-Ll~SEArHy~~ 201 (240)
T PF06175_consen 182 EELAKFYRS-LLRSEARHYQD 201 (240)
T ss_dssp HHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHhhHHHH
Confidence 776666663 68899999753
No 36
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=87.70 E-value=1.6 Score=43.05 Aligned_cols=138 Identities=18% Similarity=0.147 Sum_probs=87.5
Q ss_pred CHhHHHHHHHHHHhhHHHHHHH-----HHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccc
Q 022031 76 SLQSRQAIVHSLAHTESWAIDL-----SWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAH 150 (303)
Q Consensus 76 t~~~ra~lLHaiAHIE~~AIdL-----a~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H 150 (303)
|+.-|-++.+.++=. .+.|. -+..+++.- . ..+...=....+.+|+.|-..+.--|..+|.+=.
T Consensus 92 t~~Er~~~~~il~ff--~~~Ds~v~~nl~~~l~~~i---~-~pE~r~~l~~q~~~E~iHs~sYs~ildtl~~~~~----- 160 (369)
T PRK07209 92 TEDERRIVKRNLGFF--STADSLVANNIVLAIYRHI---T-NPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEG----- 160 (369)
T ss_pred CHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHc---C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-----
Confidence 444566666766541 22222 122334441 2 2344445568999999999999999999976321
Q ss_pred hhhHHHHHh-----------------------------hhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCCh-HHHH
Q 022031 151 DGLWDSAIA-----------------------------TSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDN-ETAK 200 (303)
Q Consensus 151 ~gLW~~a~~-----------------------------T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~-~sa~ 200 (303)
.++.+..+ +..+++.+|+....++|+-=+=.+=.++--|.+.|-. .++.
T Consensus 161 -e~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lva~~~ilEGi~FysgFa~~~~l~r~g~M~G~~~ 239 (369)
T PRK07209 161 -EIFNMYHEVPSIRAKDEFLIPFTRSLTDPNFKTGTPENDQKLLRNLIAFYCIMEGIFFYVGFTQILSLGRQNKMTGIAE 239 (369)
T ss_pred -HHHHHHHhCHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHH
Confidence 12221110 1223555555556667776666666666677777766 4467
Q ss_pred HHHhhcchhhhhhHHhhhHHHHHHHH
Q 022031 201 LLETVVYPEEITHCAAGVRWFRYLCL 226 (303)
Q Consensus 201 iL~~iI~~DEI~HV~~G~rWf~~lc~ 226 (303)
+++ -|.+||..|+.+|..=++.++.
T Consensus 240 ~i~-~I~RDE~~H~~f~~~l~~~l~~ 264 (369)
T PRK07209 240 QYQ-YILRDESMHLNFGIDLINQIKL 264 (369)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 787 6899999999999999999986
No 37
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=87.37 E-value=7.8 Score=36.37 Aligned_cols=142 Identities=20% Similarity=0.162 Sum_probs=82.2
Q ss_pred CHhHHHHHHHHHHh---hHH-HHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccch
Q 022031 76 SLQSRQAIVHSLAH---TES-WAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHD 151 (303)
Q Consensus 76 t~~~ra~lLHaiAH---IE~-~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~ 151 (303)
+..-|-++++.++= .|- ..-++. ..+.+.- .-| +-..=....+.+|+.|-..+..-|+.+|. |-.--+
T Consensus 49 s~~e~~~~~~~l~~~~~~D~~v~~~l~-~~i~~~~---~~~-E~~~~l~~q~~~E~iH~~sYs~il~~l~~---~~~~~~ 120 (281)
T PF00268_consen 49 SEEEREAYKRILAFFAQLDSLVSENLL-PNIMPEI---TSP-EIRAFLTFQAFMEAIHAESYSYILDSLGN---DPKERD 120 (281)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC---SSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHhhHH-HHHHHHc---CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChHHHH
Confidence 33457777777654 221 111221 3333331 233 23444456789999999999999999982 211122
Q ss_pred hhHHHHHhhhhhHHHHHHH----------------hhhhHhhcCCCCCHHHHHHHHcCCCh-HHHHHHHhhcchhhhhhH
Q 022031 152 GLWDSAIATSKDLLARLAI----------------EHCVHEARGLDVLPTTISRFRNGGDN-ETAKLLETVVYPEEITHC 214 (303)
Q Consensus 152 gLW~~a~~T~~dllaRmAv----------------vp~vlEArGLD~~p~~i~kl~~~GD~-~sa~iL~~iI~~DEI~HV 214 (303)
.+++...+ ...+..|+.. ...++|+--+=.+=.++--|++.|-. .++++++ -|.+||.-|+
T Consensus 121 ~~~~~~~~-~~~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~m~g~~~~i~-~I~RDE~~H~ 198 (281)
T PF00268_consen 121 EIFDWVEE-DPELQKKLDWIEKWYEDNDSLAEKLVASVILEGILFYSGFAYILYLARQGKMPGLAEIIK-LIMRDESLHV 198 (281)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHTTTHHHHHHHHHHHHTTSSHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHh-hhHHhhHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhHHHHHH-HHHHHHHHHH
Confidence 33333221 1223333322 33455655444433445556676654 5677888 5899999999
Q ss_pred HhhhHHHHHHHHh
Q 022031 215 AAGVRWFRYLCLR 227 (303)
Q Consensus 215 ~~G~rWf~~lc~~ 227 (303)
.+|..=|+.+++.
T Consensus 199 ~~~~~l~~~l~~e 211 (281)
T PF00268_consen 199 EFGIYLFRTLVEE 211 (281)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhh
Confidence 9999999999875
No 38
>COG4445 MiaE Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=86.95 E-value=16 Score=33.16 Aligned_cols=117 Identities=21% Similarity=0.292 Sum_probs=86.2
Q ss_pred HHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccch---hhHHHHHhhhhh
Q 022031 87 LAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHD---GLWDSAIATSKD 163 (303)
Q Consensus 87 iAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~---gLW~~a~~T~~d 163 (303)
=-|-|+-|--.|+-.+-||+. -.+..+-.+..|.||-+||..+.+-|+.-|+.|-.+|+.. ||-.++ +| +.
T Consensus 36 H~~CE~KAa~tAl~li~kY~~----~~~lv~km~~larEEL~HFeqV~eilq~RnI~~~~i~asrYa~~l~~~~-rt-~E 109 (203)
T COG4445 36 HLHCELKAAQTALNLIRKYPS----NTDLVDKMVLLAREELHHFEQVLEILQARNIPYVPIPASRYAKGLLAAV-RT-HE 109 (203)
T ss_pred hHHHHHHHHHHHHHHHHHccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccHHHHHHHHHH-Hh-cC
Confidence 346899999999999999974 3677888889999999999999999999999999999976 565544 45 33
Q ss_pred HH---HHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHH
Q 022031 164 LL---ARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCA 215 (303)
Q Consensus 164 ll---aRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~ 215 (303)
+. .- -||.-+.|||... --.+|.-.=|.+-++-.. =.++-|..|..
T Consensus 110 PqrliD~-Livga~IEARScE----Rfa~LaphldeelakFY~-gLl~SEaRHfq 158 (203)
T COG4445 110 PQRLIDK-LIVGAYIEARSCE----RFAALAPHLDEELAKFYK-GLLRSEARHFQ 158 (203)
T ss_pred cHHHHHH-HHHHHHHhhhhHH----HHHhhcccchHHHHHHHH-HHHHHHHHHHH
Confidence 33 33 3566689998643 222333344666666655 35788888853
No 39
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=85.01 E-value=17 Score=32.57 Aligned_cols=118 Identities=19% Similarity=0.175 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhhHHHH---
Q 022031 91 ESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLAR--- 167 (303)
Q Consensus 91 E~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~a~~T~~dllaR--- 167 (303)
|+.|+.+.-=-+.-+. ..........+.+.+|..|...++++|.++|++ -.+=+-||..+--.-..+.+.
T Consensus 14 E~~A~~iY~gQ~~~~~----~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~R---pS~l~Plw~~~g~~LG~~tal~G~ 86 (172)
T PF03232_consen 14 EVGAVRIYRGQLAVAR----RDPELRPFLKEMAEEEKDHLAWFEQLLPELRVR---PSLLNPLWYVAGFALGALTALLGD 86 (172)
T ss_pred HHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCC---CcHHHHHHHHHHHHHHHHHHhhch
Confidence 6666655432222231 145677777788889999999999999999986 234456887654322222211
Q ss_pred ---HHHhhhhHhhcCCCCCHHHHHHHHc---CCChHHHHHHHhhcchhhhhhHHhh
Q 022031 168 ---LAIEHCVHEARGLDVLPTTISRFRN---GGDNETAKLLETVVYPEEITHCAAG 217 (303)
Q Consensus 168 ---mAvvp~vlEArGLD~~p~~i~kl~~---~GD~~sa~iL~~iI~~DEI~HV~~G 217 (303)
|+.+--|=+.-+ +.=...+++|.. ..|.++.++|++ +..||+.|-..|
T Consensus 87 ~~~~a~t~avE~~V~-~Hy~~Ql~~L~~~~~~~d~~l~~~i~~-~r~DE~~H~d~A 140 (172)
T PF03232_consen 87 KAAMACTAAVETVVE-EHYNDQLRELPAMGEEEDPELRAIIEQ-FRDDELEHRDTA 140 (172)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchHHHHHHHHH-HHHHHHHHHHHH
Confidence 122211111111 222335566764 678899999996 699999998887
No 40
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=84.82 E-value=9.2 Score=31.80 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC-CC---------Cccch-hhHHHHHhhhhhHHHHHHHhhhhHhhcCCCCCHHHH
Q 022031 119 FVKVAQDEGRHFTLLAARLEELGSSY-GA---------LPAHD-GLWDSAIATSKDLLARLAIEHCVHEARGLDVLPTTI 187 (303)
Q Consensus 119 wl~VA~DEarHF~Ll~~rL~eLG~~Y-Gd---------~P~H~-gLW~~a~~T~~dllaRmAvvp~vlEArGLD~~p~~i 187 (303)
+=+++.+|.+|+-.+.+|+..||... |. ++-.. +-|+.-.--..++..--.++-.+- ..+
T Consensus 36 l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~l~~~~~~~~~~~~~l~~~~~~~~~~i~~~~---------~~i 106 (139)
T cd01043 36 FEELYDELREAIDEIAERIRALGGKPLGTLKEYAELSTIKEEPAGVLSAKEMVAELLEDYETLIEELR---------EAI 106 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---------HHH
Confidence 44778899999999999999999863 32 22222 333332222233333333443333 356
Q ss_pred HHHHcCCChHHHHHHHhhcchhhhhhH
Q 022031 188 SRFRNGGDNETAKLLETVVYPEEITHC 214 (303)
Q Consensus 188 ~kl~~~GD~~sa~iL~~iI~~DEI~HV 214 (303)
+.....||..|+++|+. |+.++-.|.
T Consensus 107 ~~a~~~~D~~t~~ll~~-il~~~ek~~ 132 (139)
T cd01043 107 ELADEAGDPATADLLTE-IIRELEKQA 132 (139)
T ss_pred HHHHHcCCHHHHHHHHH-HHHHHHHHH
Confidence 66677899999999996 577776663
No 41
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=83.82 E-value=19 Score=32.26 Aligned_cols=128 Identities=21% Similarity=0.208 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHH----------HH
Q 022031 89 HTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDS----------AI 158 (303)
Q Consensus 89 HIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~----------a~ 158 (303)
-.|.-||.-..-..-|+.+ .+...=+.+.|.||.+|..++.+.|.+++-+-...-.-.+-|+. -.
T Consensus 34 ~~E~eA~~fY~~lae~~~~-----~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (176)
T COG1633 34 RGELEAIKFYEELAERIED-----EEIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESEILEYLQPGKEM 108 (176)
T ss_pred HHHHHHHHHHHHHHHhcCC-----HhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhhhhccccCccccc
Confidence 3788888877666666642 25666677899999999999999999998765222111111111 11
Q ss_pred hhhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHHHH
Q 022031 159 ATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCL 226 (303)
Q Consensus 159 ~T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~lc~ 226 (303)
.+.+|++. .+-..+++ =-|.-+++-..+...-|....+++.+ |-.+|-+|+..=..=++.+|.
T Consensus 109 ~~~~~~~~---~I~~a~~~-E~~t~~~Y~~~~~~~~~~~~~~~~~~-~a~~E~~H~~~l~~~~~~~~~ 171 (176)
T COG1633 109 EKSVSYLE---AIEAAMEA-EKDTIEFYEELLDELVNEEAKKLFKT-IADDEKGHASGLLSLYNRLTS 171 (176)
T ss_pred ccchhHHH---HHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 22233332 22112221 23445566667777777787888985 799999999655555555543
No 42
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=79.55 E-value=10 Score=35.32 Aligned_cols=58 Identities=22% Similarity=0.135 Sum_probs=46.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 022031 84 VHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSS 143 (303)
Q Consensus 84 LHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~ 143 (303)
|+.-+-+|+.-|=..+=|.|--. ..-..+-|.=...|+.||-.|+.|..+.|..+|..
T Consensus 1 Lq~Ai~lE~atip~YL~a~ySi~--~~~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~ 58 (227)
T PF12902_consen 1 LQQAIELELATIPPYLTALYSIK--PGTNEEARNLIRSVAIEEMLHLSLAANLLNALGGS 58 (227)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHBS---TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CcHHHHHHHHHHHHHHHHHcccC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34556789999999999988663 45667788899999999999999999999999985
No 43
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=79.34 E-value=12 Score=36.03 Aligned_cols=142 Identities=13% Similarity=-0.017 Sum_probs=83.0
Q ss_pred CHhHHHHHHHHHHhh---HHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchh
Q 022031 76 SLQSRQAIVHSLAHT---ESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDG 152 (303)
Q Consensus 76 t~~~ra~lLHaiAHI---E~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~g 152 (303)
+..-|-++.|.++=. |---.+--+..+.+. -.-| +-..=....+..|+.|-..+..-|..+|.. +.-+.
T Consensus 52 t~~Er~~~~~~l~~~~~~D~~v~~~~~~~~~~~---~~~~-E~~~~~~~q~~~E~iH~~sYs~il~tl~~~----~~~~~ 123 (324)
T PRK09614 52 SDEEKNLYTRVFGGLTLLDTLQNNNGMPNLMPD---ITTP-EEEAVLANIAFMEAVHAKSYSYIFSTLCSP----EEIDE 123 (324)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---CCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----hhHHH
Confidence 345677777777642 211111112222222 1233 333334578899999999999999998642 22234
Q ss_pred hHHHHHhhhhhHHHHHH------------------HhhhhHhhcCCCCCHHHHHHHHcCCCh-HHHHHHHhhcchhhhhh
Q 022031 153 LWDSAIATSKDLLARLA------------------IEHCVHEARGLDVLPTTISRFRNGGDN-ETAKLLETVVYPEEITH 213 (303)
Q Consensus 153 LW~~a~~T~~dllaRmA------------------vvp~vlEArGLD~~p~~i~kl~~~GD~-~sa~iL~~iI~~DEI~H 213 (303)
+++... +...+..|+- +...++|+-=+=.+=.++--|.+.|-. .++++++ -|.+||.-|
T Consensus 124 ~f~~~~-~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~~~~lEgi~f~sgF~~~~~l~~~g~m~g~~~~i~-~I~RDE~~H 201 (324)
T PRK09614 124 AFEWAE-ENPYLQKKADIIQDFYEPLKKKILRKAAVASVFLEGFLFYSGFYYPLYLARQGKMTGTAQIIR-LIIRDESLH 201 (324)
T ss_pred HHHHHh-cCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHH-HHHhhhHHH
Confidence 444221 1223333332 224445555444444555566676765 4467887 589999999
Q ss_pred HHhhhHHHHHHHHh
Q 022031 214 CAAGVRWFRYLCLR 227 (303)
Q Consensus 214 V~~G~rWf~~lc~~ 227 (303)
+.+|..=++.++++
T Consensus 202 ~~f~~~l~~~l~~e 215 (324)
T PRK09614 202 GYYIGYLFQEGLEE 215 (324)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999864
No 44
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=75.63 E-value=14 Score=35.95 Aligned_cols=99 Identities=17% Similarity=0.046 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhhHHHHHH---------------HhhhhHhhcCCCCCH
Q 022031 120 VKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLA---------------IEHCVHEARGLDVLP 184 (303)
Q Consensus 120 l~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~a~~T~~dllaRmA---------------vvp~vlEArGLD~~p 184 (303)
...+..|+.|-..+.--|..||.. +--+.+++... +...+..|.. +...++|+-=+=.+-
T Consensus 95 ~~~~~~E~iHs~sYs~il~tl~~~----~~~~~~f~~~~-~~~~l~~K~~~i~~~~~~~~~~~~~v~~~~lEgi~FysgF 169 (322)
T PRK13967 95 TNMAFMESVHAKSYSSIFSTLCST----KQIDDAFDWSE-QNPYLQRKAQIIVDYYRGDDALKRKASSVMLESFLFYSGF 169 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC----hhHHHHHHHHh-cCHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999762 22344555332 2223333322 224456664333344
Q ss_pred HHHHHHHcCCCh-HHHHHHHhhcchhhhhhHHhhhH-HHHHH
Q 022031 185 TTISRFRNGGDN-ETAKLLETVVYPEEITHCAAGVR-WFRYL 224 (303)
Q Consensus 185 ~~i~kl~~~GD~-~sa~iL~~iI~~DEI~HV~~G~r-Wf~~l 224 (303)
.+.--|.+.|-. .++++++ -|.+||.-|+.+|.. +++.+
T Consensus 170 ~~~~~l~~~g~m~g~~~~i~-~I~RDE~~H~~~~~~~~~~~~ 210 (322)
T PRK13967 170 YLPMYWSSRGKLTNTADLIR-LIIRDEAVHGYYIGYKCQRGL 210 (322)
T ss_pred HHHHHHhhCCCCccHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 444455556654 4577888 689999999997763 65555
No 45
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=73.94 E-value=15 Score=35.71 Aligned_cols=144 Identities=17% Similarity=0.074 Sum_probs=88.8
Q ss_pred CHhHHHHHHHHHHhhHHHHHHHH--HHHHHhcCCCCCCC-hhHHHhHHHHHHHHHHHHHHHHHHHHHhCCC-------CC
Q 022031 76 SLQSRQAIVHSLAHTESWAIDLS--WDIVARFGKQEAMP-REFFTDFVKVAQDEGRHFTLLAARLEELGSS-------YG 145 (303)
Q Consensus 76 t~~~ra~lLHaiAHIE~~AIdLa--~Dav~RF~~~~~lP-~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~-------YG 145 (303)
++.-|-.+.+.++- +++.|.. -+.+-.|.. .++ .+...=....+..|+.|-..+.--+..+|.+ |.
T Consensus 62 t~~Er~~~~~~l~~--~~~~D~~v~~~~~~~~~~--~~~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~~~~~~~~~f~ 137 (330)
T PTZ00211 62 NDGERHFIKHVLAF--FAASDGIVLENLAQRFMR--EVQVPEARCFYGFQIAMENIHSETYSLLIDTYITDEEEKDRLFH 137 (330)
T ss_pred CHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34567777777755 2344432 111123321 122 2333444577889999999999999998774 33
Q ss_pred ---CCccc--hhhH--HHHHhhhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCCh-HHHHHHHhhcchhhhhhHHhh
Q 022031 146 ---ALPAH--DGLW--DSAIATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDN-ETAKLLETVVYPEEITHCAAG 217 (303)
Q Consensus 146 ---d~P~H--~gLW--~~a~~T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~-~sa~iL~~iI~~DEI~HV~~G 217 (303)
+.|.= ..-| +.. ++..++..+|+..- ++|+.=.=.+=.++--|++.|-. .++++++ -|.+||.-|+.+|
T Consensus 138 ~~~~~p~i~~K~~~~~~~~-~~~~~~~~~lv~~~-~lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~-~I~RDE~~H~~f~ 214 (330)
T PTZ00211 138 AIETIPAIKKKAEWAAKWI-NSSNSFAERLVAFA-AVEGIFFSGSFCAIFWLKKRGLMPGLTFSNE-LISRDEGLHTDFA 214 (330)
T ss_pred HHHhCHHHHHHHHHHHHHH-hcchHHHHHHHHHH-HhhhHHhhhhHHHHHHHHhcCCCcchHHHHH-HHHhhHHHHHHHH
Confidence 23310 0011 001 12346666665443 68888777777777788887765 4467887 6899999999999
Q ss_pred hHHHHHHHH
Q 022031 218 VRWFRYLCL 226 (303)
Q Consensus 218 ~rWf~~lc~ 226 (303)
..=++.+.+
T Consensus 215 ~~l~~~l~~ 223 (330)
T PTZ00211 215 CLLYSHLKN 223 (330)
T ss_pred HHHHHHHhc
Confidence 888888763
No 46
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=72.51 E-value=63 Score=27.89 Aligned_cols=126 Identities=16% Similarity=0.124 Sum_probs=78.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCC-CCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCccchh-hHHH
Q 022031 81 QAIVHSLAHTESWAIDLSWDIVARFGKQ-EAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSS--YGALPAHDG-LWDS 156 (303)
Q Consensus 81 a~lLHaiAHIE~~AIdLa~Dav~RF~~~-~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~--YGd~P~H~g-LW~~ 156 (303)
...|=...+.|++|....+-...=|... .++| .|-.=+.+.+.||-.|...+.++|...|.. +..++.-.. -|..
T Consensus 5 ~~~Ln~qi~~El~as~~Yl~ma~~~~~~~~~l~-g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~~~~~~~~~ 83 (160)
T cd00904 5 EAAVNRQLNLELYASYTYLSMATYFDRDDVALK-GVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKPPSDEWGG 83 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCCCcccccCC
Confidence 4566677889999999998776656321 1344 344444467999999999999999999985 555554332 4433
Q ss_pred HHhhhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHH
Q 022031 157 AIATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCA 215 (303)
Q Consensus 157 a~~T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~ 215 (303)
..... -.-+-+|..--..--.+.+.....||..+...|+.-.+.|-|.-++
T Consensus 84 ~~e~~--------e~al~~Ek~v~~~i~~l~~~A~~~~D~~t~~fl~~~fi~eQ~ee~~ 134 (160)
T cd00904 84 TLDAM--------EAALKLEKFVNQALLDLHELASEEKDPHLCDFLESHFLDEQVKEIK 134 (160)
T ss_pred HHHHH--------HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHhhchhhHHHHHHHH
Confidence 22211 1122334333333334566677789999999998413556555443
No 47
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=70.76 E-value=27 Score=34.12 Aligned_cols=102 Identities=11% Similarity=0.000 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhhHHHHHHHhhhh---------------HhhcCCCCC
Q 022031 119 FVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHCV---------------HEARGLDVL 183 (303)
Q Consensus 119 wl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~a~~T~~dllaRmAvvp~v---------------lEArGLD~~ 183 (303)
+...+..|+.|-..+.--++.+|..- + . +.+++... +...+..|.-.+-.. +|+-=+=.+
T Consensus 107 l~~q~~~E~IHs~sYs~il~tl~~~~-~--~-~~~f~~~~-~~p~l~~K~~~i~~~~~~~~~~~~~va~~~lEGi~Fysg 181 (335)
T PRK13965 107 YTNFAFMVAIHARSYGTIFSTLCSSE-Q--I-EEAHEWVV-STESLQRRARVLIPYYTGDDPLKSKVAAAMMPGFLLYGG 181 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCH-H--H-HHHHHHHh-cCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999997632 1 1 35665443 234555555544444 443333333
Q ss_pred HHHHHHHHcCCCh-HHHHHHHhhcchhhhhhHHhhhHHHHHHHH
Q 022031 184 PTTISRFRNGGDN-ETAKLLETVVYPEEITHCAAGVRWFRYLCL 226 (303)
Q Consensus 184 p~~i~kl~~~GD~-~sa~iL~~iI~~DEI~HV~~G~rWf~~lc~ 226 (303)
=.++--|.+.|-. .++++++ -|.+||.-|+.+|.-=|+.+..
T Consensus 182 Fa~~~~L~~~gkM~g~~~~i~-~I~RDE~lH~~~~~~l~~~~~~ 224 (335)
T PRK13965 182 FYLPFYLSARGKLPNTSDIIR-LILRDKVIHNYYSGYKYQQKVA 224 (335)
T ss_pred HHHHHHHhhcCCCccHHHHHH-HHHHhHHHHHHHHHHHHHHHHh
Confidence 3344456666665 4567888 6899999999988776666543
No 48
>PLN02492 ribonucleoside-diphosphate reductase
Probab=66.88 E-value=87 Score=30.27 Aligned_cols=143 Identities=20% Similarity=0.097 Sum_probs=87.5
Q ss_pred CHhHHHHHHHHHHhhHHHHHHHHH--HHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhh
Q 022031 76 SLQSRQAIVHSLAHTESWAIDLSW--DIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGL 153 (303)
Q Consensus 76 t~~~ra~lLHaiAHIE~~AIdLa~--Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gL 153 (303)
|..-|..+.+.++-. .+.|... +..-+|...-.- .+...=....+..|+.|-..+..-+..++.+- ..-+.+
T Consensus 51 t~~Er~~~~~il~~~--~~~D~~v~~~~~~~~~~~~~~-~E~~~~~~~q~~~E~iH~~sYs~i~~tl~~d~---~~~~~~ 124 (324)
T PLN02492 51 TDDERHFISHVLAFF--AASDGIVLENLAARFMKEVQV-PEARAFYGFQIAIENIHSEMYSLLLDTYIKDP---KEKDRL 124 (324)
T ss_pred CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---HHHHHH
Confidence 445677778887762 3444321 111234211112 23333345778889999999999998876521 111222
Q ss_pred HHHHH----------------hhhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCCh-HHHHHHHhhcchhhhhhHHh
Q 022031 154 WDSAI----------------ATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDN-ETAKLLETVVYPEEITHCAA 216 (303)
Q Consensus 154 W~~a~----------------~T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~-~sa~iL~~iI~~DEI~HV~~ 216 (303)
+.... ++..++..+++..- ++|+-=+=.+=.++--|++.|-. .++.+++ -|.+||.-|+.+
T Consensus 125 f~~~~~~p~l~~K~~~~~~~~~~~~~~~~~lva~~-~lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~-~I~RDE~~H~~~ 202 (324)
T PLN02492 125 FNAIETIPCVAKKADWALRWIDSSASFAERLVAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNE-LISRDEGLHCDF 202 (324)
T ss_pred HHHHHhCHHHHHHHHHHHHHHhhhHHHHHHHHHHH-hhhHHhhhhhHHHHHHHHHcCCCcchHHHHH-HHHhhHHHHHHH
Confidence 22111 11235555555443 68888887777788888888866 4467787 689999999999
Q ss_pred hhHHHHHHHH
Q 022031 217 GVRWFRYLCL 226 (303)
Q Consensus 217 G~rWf~~lc~ 226 (303)
|..=++.+.+
T Consensus 203 ~~~l~~~l~~ 212 (324)
T PLN02492 203 ACLLYSLLKN 212 (324)
T ss_pred HHHHHHHHHh
Confidence 9877887753
No 49
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=66.30 E-value=92 Score=30.35 Aligned_cols=139 Identities=19% Similarity=0.087 Sum_probs=65.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHHHH-
Q 022031 80 RQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAI- 158 (303)
Q Consensus 80 ra~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~a~- 158 (303)
-...|=...-+|-|.=.-.--..-.|+...+-+.+|..=--+...||.||=.+|++.|.--|-- =|....-+.+..
T Consensus 60 ~~~~l~~~~itEd~LP~Y~~~L~~~f~~~~~~~~~w~~w~~~WtaEE~rHg~aL~~YL~~sg~v---dp~~le~~~~~~~ 136 (297)
T cd01050 60 ARVALVGNLLTEEALPTYHSMLNRLFGLDDESPTAWARWVRRWTAEENRHGDLLNKYLYLTGRV---DPRALERTRQYLI 136 (297)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHcCcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHH
Confidence 3334434444775544333333344542111123333323467899999999999888654330 011000000000
Q ss_pred ------hhhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHH
Q 022031 159 ------ATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYL 224 (303)
Q Consensus 159 ------~T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~l 224 (303)
.+.+++. ..-+-.++.|-..-..--. ..++.+.||.--++|+. .|-.||..|.++=.+=++.+
T Consensus 137 ~~G~~~~~~~~~~-~~~~y~~fqE~aT~v~y~n-l~~~a~~gdPvL~~i~~-~IA~DE~rH~~fy~~~v~~~ 205 (297)
T cd01050 137 GSGFDPGTDNSPY-RGFVYTSFQELATRISHRN-TARLAGAGDPVLAKLLG-RIAADEARHEAFYRDIVEAL 205 (297)
T ss_pred hCCCCCCCcccHH-HHHHHHHHHHHHHHHHHHH-HHHHhcCCChHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 0000110 0011111222222111111 22233358998899999 68999999998755555544
No 50
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=63.58 E-value=79 Score=31.48 Aligned_cols=101 Identities=19% Similarity=0.146 Sum_probs=66.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhhHHHHHHHhhhhHhhcCCCCCH------------
Q 022031 117 TDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHCVHEARGLDVLP------------ 184 (303)
Q Consensus 117 ~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~a~~T~~dllaRmAvvp~vlEArGLD~~p------------ 184 (303)
.=....|..|+-|-+-+.--+..+|..=. .+-..+....+...+..|...+-..... .+-+|
T Consensus 107 ~~l~~~af~E~iHs~SYs~i~~tl~~~e~----~~~~~~~~~~~~~~l~~k~~~i~~~y~~--~~~~~~~~~~~~~~~~~ 180 (348)
T COG0208 107 AVLTNQAFMEAIHARSYSYIFDTLGPTED----EDEVFDDWVATNEILQEKAEIILRYYDD--LGDDPDDPLEEFLLKLV 180 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChh----hHHHHHHHHhccHHHHHHHHHHHHHHHh--ccCCcccchHHHHHHHH
Confidence 33457899999999999999999886433 3333322333556777777777666665 33333
Q ss_pred ---------------HHHHHHHcCCCh-HHHHHHHhhcchhhhhhHHhhhHHHHHH
Q 022031 185 ---------------TTISRFRNGGDN-ETAKLLETVVYPEEITHCAAGVRWFRYL 224 (303)
Q Consensus 185 ---------------~~i~kl~~~GD~-~sa~iL~~iI~~DEI~HV~~G~rWf~~l 224 (303)
.+.--|.+.|-. -+++|++ .|.+||..|+.+|..=|+.+
T Consensus 181 v~~~~lEgi~FYsGFa~~~~l~~r~kM~g~a~iir-lI~RDE~~H~~~~~~l~~~~ 235 (348)
T COG0208 181 VASVILEGILFYSGFAYPLYLARRGKMPGTAEIIR-LIIRDEALHLYFIGYLIQRL 235 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 222234455544 5688998 68999999998876555554
No 51
>COG3396 Uncharacterized conserved protein [Function unknown]
Probab=63.28 E-value=80 Score=30.45 Aligned_cols=127 Identities=22% Similarity=0.175 Sum_probs=72.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCC-CCCCh-hHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHHH
Q 022031 80 RQAIVHSLAHTESWAIDLSWDIVARFGKQ-EAMPR-EFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSA 157 (303)
Q Consensus 80 ra~lLHaiAHIE~~AIdLa~Dav~RF~~~-~~lP~-~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~a 157 (303)
.+.+|--.||-|+-- ++|-+.= ...|. +=..-.+....||..|-.++-..+++|+ |--.+=+
T Consensus 20 Li~~i~~~ad~elv~-------~~r~~eW~~~AP~Le~~~ala~~vqDe~GHg~~l~~laeel~---Gk~~~d~------ 83 (265)
T COG3396 20 LIRLISQLADSELVL-------ALREGEWLGHAPTLEEDLALANIVQDEMGHGWLLYRLAEELE---GKGREDD------ 83 (265)
T ss_pred HHHHHHHhcchHHHH-------hccCCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHH------
Confidence 345555556666532 2555320 11231 2223356889999999999999999994 2222100
Q ss_pred HhhhhhHHHHHHHhhhhHhhcCCCCCHH-------------HHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHH
Q 022031 158 IATSKDLLARLAIEHCVHEARGLDVLPT-------------TISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYL 224 (303)
Q Consensus 158 ~~T~~dllaRmAvvp~vlEArGLD~~p~-------------~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~l 224 (303)
-..+...-+--..++|--.+|--.. ....|.++.+..-++|+.+ |+.||.-|-+.|.-|+..+
T Consensus 84 ---la~~r~g~~k~n~~~n~P~~~Wadt~~~~fLvD~~~~~~l~~l~~ssy~PlA~~a~k-~~kEe~fHl~~~~~~l~~l 159 (265)
T COG3396 84 ---LAYLRDGRHKRNSLFNLPTGDWADTIVRGFLVDGAAIYQLEALADSSYGPLARAAQK-ICKEEEFHLRHGKTWLKRL 159 (265)
T ss_pred ---HHHHhhhHHHHHHHHcCCCccHHHHHHHHHHHhHHHHHHHHHHHhccchHHHHHHHH-HHHhHHHHHHHHHHHHHHH
Confidence 0000000000111222222222211 3446677778888999996 7999999999999999888
Q ss_pred HH
Q 022031 225 CL 226 (303)
Q Consensus 225 c~ 226 (303)
-+
T Consensus 160 ~~ 161 (265)
T COG3396 160 AN 161 (265)
T ss_pred Hh
Confidence 55
No 52
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=58.48 E-value=25 Score=35.30 Aligned_cols=107 Identities=22% Similarity=0.202 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC---CC---CCccch--hhHHH--HHhhhhhHHHHHHHhhhhHhhcCCCCCHHHHH
Q 022031 119 FVKVAQDEGRHFTLLAARLEELGSS---YG---ALPAHD--GLWDS--AIATSKDLLARLAIEHCVHEARGLDVLPTTIS 188 (303)
Q Consensus 119 wl~VA~DEarHF~Ll~~rL~eLG~~---YG---d~P~H~--gLW~~--a~~T~~dllaRmAvvp~vlEArGLD~~p~~i~ 188 (303)
....+..|+.|-..+.--+..||.. |. +.|+.. .-|-. -..+..++..+|+ .--.+|+-=+=.+=.++-
T Consensus 182 ~~~q~~~E~iHsesYs~il~tl~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~lv-~~~~lEgi~Fys~Fa~~~ 260 (410)
T PRK12759 182 LGSFAAREGIHQRAYALLNDTLGLPDSEYHAFLEYKAMTDKIDFMMDADPTTRRGLGLCLA-KTVFNEGVALFASFAMLL 260 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhHHHHHHHHHHHhcCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999873 22 122211 00100 0012223444443 333477766655556666
Q ss_pred HHHcCCCh-HHHHHHHhhcchhhhhhHHhhhHHHHHHHHh
Q 022031 189 RFRNGGDN-ETAKLLETVVYPEEITHCAAGVRWFRYLCLR 227 (303)
Q Consensus 189 kl~~~GD~-~sa~iL~~iI~~DEI~HV~~G~rWf~~lc~~ 227 (303)
-|++.|-. .++.+++ -|.+||.-|+.+|..=|+.+|+.
T Consensus 261 ~l~~~g~m~g~~~~i~-~I~RDE~lH~~~~~~l~~~l~~e 299 (410)
T PRK12759 261 NFQRFGKMKGMGKVVE-WSIRDESMHVEGNAALFRIYCQE 299 (410)
T ss_pred HHHhcCCCeeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777765 4467887 68999999999999999999873
No 53
>PF11266 DUF3066: Protein of unknown function (DUF3066); InterPro: IPR022612 This cyanobacterial family of fatty aldehyde decarbonylases acts on mainly C16 and C18 substrates to form hydrocarbons and carbon monoxide []. Note that the corresponding EC number (4.1.99.5 from EC) dating from 1989 refers to a nonorthologous Pisum sativum enzyme that acts on C18 and longer chains and attaches the overly narrow narrow name octadecanal decarbonylase. ; PDB: 2OC5_A.
Probab=58.45 E-value=56 Score=30.26 Aligned_cols=106 Identities=21% Similarity=0.264 Sum_probs=73.1
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--------ccchhhHHHHHhhhhhHHHHHHHhhhhHhhcCCCCCH
Q 022031 113 REFFTDFVKVAQDEGRHFTLLAARLEELGSSYGAL--------PAHDGLWDSAIATSKDLLARLAIEHCVHEARGLDVLP 184 (303)
Q Consensus 113 ~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~--------P~H~gLW~~a~~T~~dllaRmAvvp~vlEArGLD~~p 184 (303)
.+..+++.+.+.=|.||.+=....=+.||+.- |+ |+|+.+-.++.+ ..+..=+-|-.+..|+=.+-+
T Consensus 37 P~~~deL~rLakME~rH~kgF~aCGrNL~V~~-Dm~fA~~fF~~Lh~nFq~A~~~--gk~~tCLlIQaliIE~FAIaA-- 111 (219)
T PF11266_consen 37 PDQKDELIRLAKMENRHKKGFQACGRNLGVTP-DMPFAKEFFSPLHGNFQRAAAE--GKVVTCLLIQALIIECFAIAA-- 111 (219)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHT--T-HHHHHHHHHTHHHHHHHHH--
T ss_pred cccHHHHHHHHHHHHHHHhHHHHhccCCcCCC-CcHHHHHHHHHHHHHHHHHHHc--CCeeehHHHHHHHHHHHHHHH--
Confidence 35678999999999999999888888888863 44 456655444432 567767777777666532211
Q ss_pred HHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHHHH
Q 022031 185 TTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCL 226 (303)
Q Consensus 185 ~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~lc~ 226 (303)
-.-.-.+-|.-+.+|-+- +..||-.|..+|-.|++---+
T Consensus 112 --YniYIpVAD~FARkITeg-VVkDEy~HLNfGe~WLk~~f~ 150 (219)
T PF11266_consen 112 --YNIYIPVADPFARKITEG-VVKDEYTHLNFGEEWLKANFE 150 (219)
T ss_dssp --HHHHGGGS-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhhceecccHHHHHHHHH-HHhhHHHhcchHHHHHHHHHH
Confidence 122346778888899995 589999999999999986543
No 54
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=52.33 E-value=1.2e+02 Score=25.49 Aligned_cols=116 Identities=19% Similarity=0.254 Sum_probs=73.2
Q ss_pred HhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHH---------HHH
Q 022031 88 AHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWD---------SAI 158 (303)
Q Consensus 88 AHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~---------~a~ 158 (303)
-..|..|=|......-+|+ +..- |...|..|++|...+...++.+|+.-=.-+.-.+.+. ...
T Consensus 9 le~Ek~a~~~Y~~~~~k~~-----~~~~---F~~la~~E~~H~~~l~~L~~~~~~~~p~~~~~~~~f~~~~~~~l~~~~~ 80 (135)
T cd01048 9 LEEEKLARDVYLALYEKFG-----GLRP---FSNIAESEQRHMDALKTLLERYGLPDPVDPFSGGVFTNPQYNQLVEQGP 80 (135)
T ss_pred HHHHHHHHHHHHHHHHHhc-----Ccch---HHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccccccchhHHHHHHhcc
Confidence 3688888888888888883 2222 3457899999999999999999976321111112221 111
Q ss_pred hhhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhH
Q 022031 159 ATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVR 219 (303)
Q Consensus 159 ~T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~r 219 (303)
.|..+.+ |+|+ -.|.-+. ..+-+.++...|....+|+. .+...|..|-..=.|
T Consensus 81 ~s~~~al-~~g~---~~E~~~i---~~ye~~~~~~~d~d~k~v~~-~L~~~e~~H~~~f~~ 133 (135)
T cd01048 81 KSLQDAL-EVGV---LIEELDI---ADYDRLLERTQNPDIRDVFE-NLQAASRNHHLPFFR 133 (135)
T ss_pred ccHHHHH-HHHH---HHHHHHH---HHHHHHHHhcccHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 2222222 3332 3444333 34566677788888899999 478999999875444
No 55
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=52.11 E-value=80 Score=24.91 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHH
Q 022031 79 SRQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAAR 136 (303)
Q Consensus 79 ~ra~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~r 136 (303)
+...+|.....+|..||...-.++-.+. +..-..=+.+.+.||.+|..++.+.
T Consensus 86 ~~~~~l~~a~~~E~~~~~~Y~~~~~~~~-----d~~~~~~~~~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 86 DPLEALRLAIEIEKDAIEFYEELAEKAE-----DPEVKKLFEELAEEERGHLRLLEEL 138 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777888899999987766665552 3345555668999999999998764
No 56
>PRK14983 aldehyde decarbonylase; Provisional
Probab=51.54 E-value=45 Score=31.09 Aligned_cols=106 Identities=22% Similarity=0.251 Sum_probs=71.1
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc--------cchhhHHHHHhhhhhHHHHHHHhhhhHhhcCCCCCH
Q 022031 113 REFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALP--------AHDGLWDSAIATSKDLLARLAIEHCVHEARGLDVLP 184 (303)
Q Consensus 113 ~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P--------~H~gLW~~a~~T~~dllaRmAvvp~vlEArGLD~~p 184 (303)
.+..+++.+.|.=|.||.+=....=+.||+.- |+| +|+.+-.++.+ ..+..=+-|-.+..|+=.+-+--
T Consensus 47 P~~~dEL~rLakME~rH~kgF~aCGrNL~V~~-Dm~fA~~fF~~Lh~nFq~A~~e--gkv~TCLlIQaLiIE~FAIaAYn 123 (231)
T PRK14983 47 PEHAEELTRLAKMEMRHKKGFTACGRNLGVTP-DMPFAKEFFSPLHGNFQKAAAE--GKVVTCLLIQALIIEAFAIAAYN 123 (231)
T ss_pred cccHHHHHHHHHHHHHHHhHHHHHcccCcCCC-CcHHHHHHHHHHHHHHHHHHhc--CCeeehHHHHHHHHHHHHHHHHh
Confidence 35678999999999999988777777777653 443 55554443322 45555555555555553222111
Q ss_pred HHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHHHH
Q 022031 185 TTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCL 226 (303)
Q Consensus 185 ~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~lc~ 226 (303)
-.-.+-|.-+.+|-+- +..||-.|..+|-.|++---+
T Consensus 124 ----iYIpVAD~FARkITeg-VVkDEY~HLN~Ge~WLk~~f~ 160 (231)
T PRK14983 124 ----IYIPVADPFARKITEG-VVKDEYLHLNFGEEWLKANFE 160 (231)
T ss_pred ----hccccccHHHHHHHHh-HHhhHHHhcchHHHHHHHHHH
Confidence 1225678888889985 589999999999999986433
No 57
>PF07410 Phage_Gp111: Streptococcus thermophilus bacteriophage Gp111 protein; InterPro: IPR010878 This family consists of several proteins whose function is not known. It is named after the Streptococcus bacteriophage Gp111 protein.
Probab=47.46 E-value=61 Score=27.04 Aligned_cols=49 Identities=20% Similarity=0.465 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHH-------HHHHHHHHHHHhCCCCC
Q 022031 93 WAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGR-------HFTLLAARLEELGSSYG 145 (303)
Q Consensus 93 ~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEar-------HF~Ll~~rL~eLG~~YG 145 (303)
+|=++|=+++.+|+ +=-.+|+..=|+.|+.++| -|.-+.++|++.| .|-
T Consensus 3 ~AW~iAK~aa~KFG---GKAkEYfaESLKmAW~~aK~~~tsl~~~~~~~~kl~k~g-~ys 58 (106)
T PF07410_consen 3 NAWEIAKEAAKKFG---GKAKEYFAESLKMAWAMAKGENTSLEDVKAMEGKLRKAG-KYS 58 (106)
T ss_pred hHHHHHHHHHHHhC---chHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcC-cee
Confidence 57788999999996 5679999999999999999 5888999999999 554
No 58
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=44.37 E-value=70 Score=28.73 Aligned_cols=80 Identities=23% Similarity=0.152 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHH
Q 022031 119 FVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNET 198 (303)
Q Consensus 119 wl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~a~~T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~s 198 (303)
+.++|.+|..|-.-+.+.|.+++.- ...|..+|. ++|=.-..|.. +..|.+.+..+..|+.+.
T Consensus 42 fr~iA~~E~~HA~~~~~~l~~~~~~-------------~~~~~eNl~--~aieGE~~e~~--emyp~~ae~A~~~g~~~~ 104 (166)
T COG1592 42 FRAIAEAEAVHAKNHLKLLGKLLLV-------------LGDTRENLE--EAIEGETYEIT--EMYPVFAEVAEEEGFKEA 104 (166)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccc-------------cccHHHHHH--HHHccchHHHH--HhChHHHHHHHHcCcHHH
Confidence 4589999999999999999988811 123434443 45555555554 567889999999998888
Q ss_pred HHHHHhhcchhhhhhHHh
Q 022031 199 AKLLETVVYPEEITHCAA 216 (303)
Q Consensus 199 a~iL~~iI~~DEI~HV~~ 216 (303)
+.-++ .+..+|..|-..
T Consensus 105 a~~f~-~~~~~Ek~H~~~ 121 (166)
T COG1592 105 ARSFR-AAAKAEKRHAEM 121 (166)
T ss_pred HHHHH-HHHHHHHHHHHH
Confidence 88888 579999999654
No 59
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=40.03 E-value=2.6e+02 Score=27.26 Aligned_cols=98 Identities=13% Similarity=0.031 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhhHHHHHHHhhhhHh---------------hcCCCCCH
Q 022031 120 VKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHCVHE---------------ARGLDVLP 184 (303)
Q Consensus 120 l~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~a~~T~~dllaRmAvvp~vlE---------------ArGLD~~p 184 (303)
...+..|+-|-..+.--+..+|.. ..-+.++.... +...+..|.-.+-.+.+ +-=+=.+-
T Consensus 97 ~~q~~~E~IHsesYs~il~tl~~~----~~~~~~f~~~~-~~~~l~~K~~~i~~~~~~~~~~~~~va~~~lEgi~FysgF 171 (324)
T PRK13966 97 TNIAFMESVHAKSYSQIFSTLCST----AEIDDAFRWSE-ENRNLQRKAEIVLQYYRGDEPLKRKVASTLLESFLFYSGF 171 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCc----HHHHHHHHHHh-cCHHHHHHHHHHHHHhcCChHHHHHHHHHHHhHHHHHHHH
Confidence 467899999999999999999742 23345555443 23456666655544444 32112222
Q ss_pred HHHHHHHcCCC-hHHHHHHHhhcchhhhhhHHhhhHHHHH
Q 022031 185 TTISRFRNGGD-NETAKLLETVVYPEEITHCAAGVRWFRY 223 (303)
Q Consensus 185 ~~i~kl~~~GD-~~sa~iL~~iI~~DEI~HV~~G~rWf~~ 223 (303)
.++--|.+.|- ..++.+++ -|.+||.-|+.+|..=|+.
T Consensus 172 ~~~~~l~~~~km~g~~~~i~-~I~RDE~lH~~f~~~l~~~ 210 (324)
T PRK13966 172 YLPMYWSSRAKLTNTADMIR-LIIRDEAVHGYYIGYKFQR 210 (324)
T ss_pred HHHHHHhhcCCCCcHHHHHH-HHHHhHHHHHHHHHHHHHH
Confidence 22223333343 35677888 6899999999998665553
No 60
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=39.43 E-value=2.9e+02 Score=24.93 Aligned_cols=107 Identities=20% Similarity=0.243 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHH-HHHHHHHHHHHHHHHHHHhCCC--CCCCccchh---
Q 022031 79 SRQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVK-VAQDEGRHFTLLAARLEELGSS--YGALPAHDG--- 152 (303)
Q Consensus 79 ~ra~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~-VA~DEarHF~Ll~~rL~eLG~~--YGd~P~H~g--- 152 (303)
+-+.+|-.=-|-||+|-+|.+...+=|. .-....+..|++ .|.||-.|..++-+.|.+-|.. .|.+.+-+.
T Consensus 5 ~~~~~LN~Q~N~E~yas~lYl~maa~~~---~~~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~~~~l~~I~~P~~~~~ 81 (167)
T COG1528 5 KMIELLNEQMNLEFYASNLYLQMAAWCS---SESLPGFAKFLRAQAQEELTHAMKLFNYLNERGARPELKAIEAPPNKFS 81 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCcCCCccccC
Confidence 3456677778899999999999988785 355567777776 5899999999999999999985 787776654
Q ss_pred ----hHHHHHhhhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHH
Q 022031 153 ----LWDSAIATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLE 203 (303)
Q Consensus 153 ----LW~~a~~T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~ 203 (303)
+++.+.+...-+...+. .+.+.-...+|..|..-|+
T Consensus 82 s~~e~f~~tlehEq~vt~~I~---------------~L~~~a~~~kD~~T~nFLq 121 (167)
T COG1528 82 SLKELFEKTLEHEQKVTSSIN---------------ELAEVAREEKDYATFNFLQ 121 (167)
T ss_pred CHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHcCchhHHHHHH
Confidence 44444443333333322 1233344567777766665
No 61
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=39.43 E-value=4e+02 Score=26.50 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=37.9
Q ss_pred HHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHHHHhcCCCccccCCCCCCCcccccccchhhhhHHHHHHHHHHHH
Q 022031 188 SRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCLRSRDPALLRDSLAPPESEAGENVCTIEENEEVIRKFHAIVR 267 (303)
Q Consensus 188 ~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~lv~ 267 (303)
+..++.||..-+.||. .|-.||..|-.+=.+=+..+- ..+| +..+..+.+.++
T Consensus 176 ~~a~~~~DpvL~~il~-~IA~DE~rH~~fy~~iv~~~l---~~dP-----------------------d~t~~Ai~~vm~ 228 (330)
T PF03405_consen 176 RLAKQAGDPVLAQILG-RIAADEARHEAFYRNIVEAYL---ELDP-----------------------DGTMLAIADVMR 228 (330)
T ss_dssp HHHHHTTSHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHSH-----------------------HHHHHHHHHHHH
T ss_pred HHHhhcCChHHHHHHH-HHHhhHHHHHHHHHHHHHHHH---hhCc-----------------------HHHHHHHHHHHH
Confidence 3444779999999999 589999999987444443332 2343 334678888888
Q ss_pred h
Q 022031 268 T 268 (303)
Q Consensus 268 ~ 268 (303)
+
T Consensus 229 ~ 229 (330)
T PF03405_consen 229 N 229 (330)
T ss_dssp H
T ss_pred H
Confidence 7
No 62
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=37.87 E-value=1.7e+02 Score=24.73 Aligned_cols=53 Identities=15% Similarity=0.056 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHH
Q 022031 80 RQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARL 137 (303)
Q Consensus 80 ra~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL 137 (303)
-..+|-.-.-+|..||+..-.++-+.. + .+-..=+.+.+.||..|..+|.+.|
T Consensus 102 ~~~~L~~~~~~E~~ai~~Y~~~~~~~~---d--~~~r~ll~~I~~eE~~H~~~L~~~l 154 (154)
T cd07908 102 IKEMLKLDIASEKAAIAKYKRQAETIK---D--PYIRALLNRIILDEKLHIKILEELL 154 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC---C--HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344666666799999999988877552 1 3334457789999999999997754
No 63
>TIGR03225 benzo_boxB benzoyl-CoA oxygenase, B subunit. Members of this protein family are BoxB, the B subunit of benzoyl-CoA oxygenase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation.
Probab=37.60 E-value=3.1e+02 Score=28.23 Aligned_cols=108 Identities=19% Similarity=0.302 Sum_probs=75.4
Q ss_pred CChhH-HHhHHHHHHHHHHHHHHHHHHH-HHhCCCCCCCccchhhHHHHHhhhhhHHHHHHHh---hhhHhhcCCCCC--
Q 022031 111 MPREF-FTDFVKVAQDEGRHFTLLAARL-EELGSSYGALPAHDGLWDSAIATSKDLLARLAIE---HCVHEARGLDVL-- 183 (303)
Q Consensus 111 lP~~F-y~Dwl~VA~DEarHF~Ll~~rL-~eLG~~YGd~P~H~gLW~~a~~T~~dllaRmAvv---p~vlEArGLD~~-- 183 (303)
.|.-| ..-..+|-.||.||.=-+.-.| +..|. +| + +.++.|+.|..-- ||.|.|-|...+
T Consensus 133 aPSlyD~rnlfqvnvEEgRHlWaMvyLL~k~FG~--------dG-r----eeAe~LL~rrsGd~d~PRiL~AFN~~t~dW 199 (471)
T TIGR03225 133 APSLYDLRNLFQVNVEEGRHLWAMVYLLHKYFGR--------DG-R----EEAEALLRRRSGDADNPRILGAFNEKTPDW 199 (471)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------cc-H----HHHHHHHHhhcCCCCCcchhhhccCCCccH
Confidence 44433 2346789999999987666666 55554 34 2 3456788887766 589999887543
Q ss_pred --------------HHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhh----HHHHHHHHhcCCCc
Q 022031 184 --------------PTTISRFRNGGDNETAKLLETVVYPEEITHCAAGV----RWFRYLCLRSRDPA 232 (303)
Q Consensus 184 --------------p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~----rWf~~lc~~~~~~~ 232 (303)
...+..|+..|=..-+.... ..+.||..|.-+|- |=..+-|+.....+
T Consensus 200 lsffmFT~ftDRdGk~QL~alaeS~FdPLaRt~r-fMltEEahHmfvGetGv~rviqrtce~m~~~~ 265 (471)
T TIGR03225 200 LSFFMFTYFTDRDGKMQLAALAESGFDPLSRTCR-FMLTEEAHHMFVGESGVGRVIERTCQVMKENG 265 (471)
T ss_pred HHHhHhheeecccchhhHHHHHhcCCchHhhhhH-HHhhhhHhHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 33455666666444556666 57889999999998 88888898766543
No 64
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=35.60 E-value=2.2e+02 Score=22.52 Aligned_cols=76 Identities=18% Similarity=0.150 Sum_probs=54.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHHHHhhh
Q 022031 82 AIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATS 161 (303)
Q Consensus 82 ~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~a~~T~ 161 (303)
..|..+..++..+|+-.=.++-.-. ..++..-+.+.+.+-.+|..-|..++.++| |+.+-+.+++-.+.++-
T Consensus 4 ~~Ln~Ll~~~~d~~~~Y~~a~~~~~-----~~~lk~~f~~~~~~~~~~~~~L~~~i~~~G---g~p~~~gs~~g~~~r~~ 75 (111)
T PF09537_consen 4 EALNDLLKGLHDGIEGYEKAAEKAE-----DPELKSLFQEFAQERQQHAEELQAEIQELG---GEPEESGSFKGALHRAW 75 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----H----HHCHHHH-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCcCcccCHHHHHHHHH
Confidence 4577788888888888777777662 378888899999999999999999999999 77777777777766664
Q ss_pred hhHH
Q 022031 162 KDLL 165 (303)
Q Consensus 162 ~dll 165 (303)
-++.
T Consensus 76 ~~ik 79 (111)
T PF09537_consen 76 MDIK 79 (111)
T ss_dssp THHH
T ss_pred HHHH
Confidence 4444
No 65
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=34.08 E-value=1.2e+02 Score=34.22 Aligned_cols=123 Identities=20% Similarity=0.125 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCccc--hhhHHHHHhhhhhH-
Q 022031 89 HTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELG-SSYGALPAH--DGLWDSAIATSKDL- 164 (303)
Q Consensus 89 HIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG-~~YGd~P~H--~gLW~~a~~T~~dl- 164 (303)
.||-.+-+-.-.+.-+..+ .+-..=|.+-|.+|.+|...+.++++..- -.-.++-.- ..++...... .++
T Consensus 870 ~mE~~g~~FY~~~A~~a~~-----~~~K~lF~~LA~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 943 (1006)
T PRK12775 870 EIELGGMAFYARAAKETSD-----PVLKELFLKFAGMEQEHMATLARRYHAAAPSPTEGFKIERAAIMAGVKGRP-DDPG 943 (1006)
T ss_pred HHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchhhhhhhhcccc-CCHH
Confidence 4677666666655555421 12223344678999999999999887521 101111000 0111100001 111
Q ss_pred -HHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChH-HHHHHHhhcchhhhhhHHhhhHHHHHH
Q 022031 165 -LARLAIEHCVHEARGLDVLPTTISRFRNGGDNE-TAKLLETVVYPEEITHCAAGVRWFRYL 224 (303)
Q Consensus 165 -laRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~-sa~iL~~iI~~DEI~HV~~G~rWf~~l 224 (303)
.-||| +-.|+..+|. +.+-.+...|.+ ..++++. |-.+|.+|++.=.+=+..+
T Consensus 944 ~al~lA---m~~Ekdai~f---Y~~la~~~~d~e~~k~l~~~-LA~EEk~Hl~~L~~~~d~~ 998 (1006)
T PRK12775 944 NLFRIA---IEFERRAVKF---FKERVAETPDGSVERQLYKE-LAAEEREHVALLTTEFERW 998 (1006)
T ss_pred HHHHHH---HHHHHHHHHH---HHHHHhhCCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 12444 5778888874 555566677875 5788984 7999999997655555555
No 66
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.05 E-value=96 Score=25.71 Aligned_cols=45 Identities=24% Similarity=0.530 Sum_probs=33.2
Q ss_pred ChhHHHhHHHHHHHHHHHHHHHHHHHHHhC-CCCCCC-ccchhhHHHH
Q 022031 112 PREFFTDFVKVAQDEGRHFTLLAARLEELG-SSYGAL-PAHDGLWDSA 157 (303)
Q Consensus 112 P~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG-~~YGd~-P~H~gLW~~a 157 (303)
..+-|.+|++-..|+----+ +..||..|- ..+||. ||..|.||.=
T Consensus 8 ~~d~F~~W~~kLkD~~Aka~-I~~Rl~rl~~GN~GD~kpvgeGV~ELR 54 (100)
T COG3657 8 GTDTFSEWLKKLKDRRAKAK-IAARLDRLALGNFGDVKPVGEGVSELR 54 (100)
T ss_pred chHHHHHHHHHHHhHHHHHH-HHHHHHHHhcCCCcCccccccchhhhe
Confidence 45678999999988755444 455666554 479997 9999999863
No 67
>PF13668 Ferritin_2: Ferritin-like domain
Probab=32.89 E-value=1.4e+02 Score=24.56 Aligned_cols=55 Identities=13% Similarity=0.070 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 022031 80 RQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEE 139 (303)
Q Consensus 80 ra~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~e 139 (303)
...+|-...=+|-.++.....++-++. ..+...=...++..|++|-.+++..|.+
T Consensus 83 ~~~~L~~A~~~E~~~~~~Y~g~~~~~~-----~~~~~~~~~~i~~~Ea~H~~~ir~ll~~ 137 (137)
T PF13668_consen 83 DASFLRLAYTLEDVGVSAYKGAAPQIE-----DPELKALAASIAGVEARHAAWIRNLLGQ 137 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344555555699999999999999884 3567888899999999999999998753
No 68
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=32.85 E-value=43 Score=32.56 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 022031 120 VKVAQDEGRHFTLLAARLEEL 140 (303)
Q Consensus 120 l~VA~DEarHF~Ll~~rL~eL 140 (303)
-++|.||.||+..+.+.++.+
T Consensus 185 ~~IA~DE~rH~~fy~~~v~~~ 205 (297)
T cd01050 185 GRIAADEARHEAFYRDIVEAL 205 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999986653
No 69
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=32.68 E-value=1.8e+02 Score=23.83 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=19.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 022031 116 FTDFVKVAQDEGRHFTLLAARLE 138 (303)
Q Consensus 116 y~Dwl~VA~DEarHF~Ll~~rL~ 138 (303)
..-..+.+.||..|...|.+.+.
T Consensus 102 ~~~~~~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 102 RPELKEIIADELEHEEVLIALLD 124 (125)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556899999999999988765
No 70
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=29.92 E-value=2.5e+02 Score=23.10 Aligned_cols=60 Identities=12% Similarity=0.003 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHH-HHHHHHHHHHHHHHHHHHhC
Q 022031 79 SRQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVK-VAQDEGRHFTLLAARLEELG 141 (303)
Q Consensus 79 ~ra~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~-VA~DEarHF~Ll~~rL~eLG 141 (303)
-+-.|-.++.|-+..+|+.--+.+---. .--..=..+|++ .+.+|.+|..++.+.|..|+
T Consensus 74 ~~~~l~~~~~~E~~e~~~~y~~~~~~A~---~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~l~ 134 (134)
T cd01041 74 TLENLKAAIAGETYEYTEMYPEFAEVAE---EEGFKEAARSFEAIAEAEKVHAERYKKALENLE 134 (134)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3567778888766656666555433221 122233455665 89999999999999988763
No 71
>PF13794 MiaE_2: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like; PDB: 3EZ0_C.
Probab=29.60 E-value=68 Score=29.31 Aligned_cols=136 Identities=23% Similarity=0.194 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhhHHHHHHH-HHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCC-CccchhhHHH
Q 022031 79 SRQAIVHSLAHTESWAIDL-SWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGA-LPAHDGLWDS 156 (303)
Q Consensus 79 ~ra~lLHaiAHIE~~AIdL-a~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd-~P~H~gLW~~ 156 (303)
+-+-||=-+|-.|+.|.+. |-|+ ++. ++|.. ..-..+.|.-|..||..|.++|.++|.+.-+ +--..+-.+.
T Consensus 6 ~v~~llg~lAy~eL~aF~rLa~da--~~A--P~l~~--r~ala~mAaae~~hf~~L~~~l~~~G~d~~~am~pf~~~ld~ 79 (185)
T PF13794_consen 6 AVVDLLGVLAYGELAAFERLAEDA--RMA--PTLAD--RIALARMAAAEFGHFERLEARLAERGVDPEEAMEPFVGALDA 79 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--CC---SSSTT--HHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hhC--cCHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3455677778889988875 3444 343 34544 3567899999999999999999999987532 2222222221
Q ss_pred HH-h-hhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHHHHh
Q 022031 157 AI-A-TSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCLR 227 (303)
Q Consensus 157 a~-~-T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~lc~~ 227 (303)
-. . +..|-..+|-=.- |..+- .-.+..++...=|.++..++.. ++ ++-+|-.+.+.-++-.+..
T Consensus 80 f~~rT~P~dW~E~LvKaY-Vg~gl----a~DFy~~va~~L~~~~r~~v~~-vl-~~~~~s~f~~~~vraai~a 145 (185)
T PF13794_consen 80 FHARTRPSDWLESLVKAY-VGDGL----AADFYREVASGLDPETRALVLD-VL-ADTGHSEFAVAEVRAAIAA 145 (185)
T ss_dssp HHHTT--SSHHHHHHHHH-HHHHH----HHHHHHHHCCCS-HHHHHHHHH-HS---HHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCChHHHHHHHH-HHHhH----HHHHHHHHHhcCCHHHHHHHHH-Hh-ccccchHHHHHHHHHHHhh
Confidence 11 1 1123333332100 11111 1124445555556777777763 34 6678888888888888774
No 72
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=28.71 E-value=4.3e+02 Score=23.68 Aligned_cols=121 Identities=18% Similarity=0.117 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCc-cch--hh
Q 022031 79 SRQAIVHSLAHTESWAIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSS--YGALP-AHD--GL 153 (303)
Q Consensus 79 ~ra~lLHaiAHIE~~AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~--YGd~P-~H~--gL 153 (303)
.-+..|+.+---|+-|||-.|=-.-=+ .+.++- .-+.-.-..+.||-+|--.|.+|+--|+.. +-+++ ..- ..
T Consensus 6 ~Vi~~LN~~L~~EL~ainQYflHsrM~-~~WG~~-~L~~~~~~esi~Em~HAd~lieRIlfLeG~Pnlq~~~~l~iG~tv 83 (157)
T COG2193 6 KVIRLLNEALGLELAAINQYFLHSRMY-KNWGLT-KLAAHEYHESIEEMKHADQLIERILFLEGLPNLQDLGKLRIGETV 83 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcChH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccccCCCH
Confidence 457788999999999999886543222 222221 122233478999999999999998887763 22222 111 12
Q ss_pred HHHHHhhhhhHHHHHHHhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhH
Q 022031 154 WDSAIATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHC 214 (303)
Q Consensus 154 W~~a~~T~~dllaRmAvvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV 214 (303)
=++.+ .|| .+|--+.+.-...|.-+++.+|..|.+++++ |+.||-.|.
T Consensus 84 ~E~L~---~DL---------~~E~~a~~~lk~~i~~~e~~~Dyvsrdl~~~-iL~deEEHi 131 (157)
T COG2193 84 KEMLE---ADL---------ALEYEARDALKEAIAYCEEVQDYVSRDLLEE-ILADEEEHI 131 (157)
T ss_pred HHHHH---HHH---------HHHHHHHHHHHHHHHHHHhcccchHHHHHHH-HHcchHHHH
Confidence 22222 122 3444444555557889999999999999995 799999997
No 73
>TIGR02869 spore_SleB spore cortex-lytic enzyme. Members of this protein family are the spore cortex-lytic enzyme SleB from Bacillus subtilis and other Gram-positive, endospore-forming bacterial species. This protein is stored in an inactive form in the spore and activated during germination.
Probab=25.92 E-value=2.1e+02 Score=26.01 Aligned_cols=84 Identities=23% Similarity=0.240 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhhHHHHHHHhhhhHhhcCCC----CCHHHHHHHHcC-----------C
Q 022031 130 FTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHCVHEARGLD----VLPTTISRFRNG-----------G 194 (303)
Q Consensus 130 F~Ll~~rL~eLG~~YGd~P~H~gLW~~a~~T~~dllaRmAvvp~vlEArGLD----~~p~~i~kl~~~-----------G 194 (303)
-..|+++|..+|+..|.. +|.+... |. .-|-....+.||. +++.+..+|.-. |
T Consensus 16 V~~LQ~~L~~lG~~~g~i---dG~fg~~--T~-------~AV~~FQ~~~GL~~dG~vg~~T~~~L~~~~~~~~~~~~~~~ 83 (201)
T TIGR02869 16 VIEIQRRLKAWGYYNGKV---DGVFGWL--TY-------WAVRKFQSKNGLTVDGIVGPKTKAALGIATTQQSSANSSFG 83 (201)
T ss_pred HHHHHHHHHHcCCCCCCC---CCccCHH--HH-------HHHHHHHHHhCCCCCCCcCHHHHHHhCCccccCccCCCCCC
Confidence 467899999999987755 5766543 32 2244577888885 578888888322 1
Q ss_pred -ChHHHHHHHhhcchh-----hhhhHHhhhHHHHHHH
Q 022031 195 -DNETAKLLETVVYPE-----EITHCAAGVRWFRYLC 225 (303)
Q Consensus 195 -D~~sa~iL~~iI~~D-----EI~HV~~G~rWf~~lc 225 (303)
..+-.++|.++|+.| ..+=|+.|.-+++++-
T Consensus 84 ~s~~di~~Lar~i~~Ea~ge~~~G~~aV~~VilNRv~ 120 (201)
T TIGR02869 84 YSNQDIDLLARLVNGEARGEPYEGQVAVAAVILNRVR 120 (201)
T ss_pred CCHHHHHHHHHHHHHHHcCCCcchhhhhhhhhhcccc
Confidence 223456777666644 3678999999999883
No 74
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=25.62 E-value=5.6e+02 Score=26.15 Aligned_cols=94 Identities=20% Similarity=0.146 Sum_probs=57.8
Q ss_pred hHH-HHHHHHHHHHHHHHHH------------------HHHhCCCCCCC--ccchhhHHHHHhhhhhHHHHHHHhhhhHh
Q 022031 118 DFV-KVAQDEGRHFTLLAAR------------------LEELGSSYGAL--PAHDGLWDSAIATSKDLLARLAIEHCVHE 176 (303)
Q Consensus 118 Dwl-~VA~DEarHF~Ll~~r------------------L~eLG~~YGd~--P~H~gLW~~a~~T~~dllaRmAvvp~vlE 176 (303)
.|+ +...||-||=-+|++. |-.-|++-|.. |.|+-.+-+-++-+. ++.--
T Consensus 159 ~Wvr~WTAEENRHgdlL~~YLylTgrVDm~~iE~t~q~li~~G~d~~~~~~py~~~vYtSFQErAT----~VSH~----- 229 (390)
T PLN00179 159 RWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERAT----FISHG----- 229 (390)
T ss_pred hhccccccccchHHHHHHHHHhhccCcCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH----HHHhh-----
Confidence 344 3578999998877743 33457776653 666665554444322 22111
Q ss_pred hcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhHHhhhHHHHHHHHhcCCCc
Q 022031 177 ARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYLCLRSRDPA 232 (303)
Q Consensus 177 ArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV~~G~rWf~~lc~~~~~~~ 232 (303)
.+.+--.+.||..-+.|+. +|-.||..|-.+=.+=...+ ..+||
T Consensus 230 --------NTarlA~~~gDp~la~icg-~IAaDE~rHe~fY~~iV~~~---le~dP 273 (390)
T PLN00179 230 --------NTARLAKEHGDAKLAKICG-TIAADEKRHETAYTRIVEKL---FEIDP 273 (390)
T ss_pred --------hHHHHHHhcCChHHHHHHH-HHhccHHHHHHHHHHHHHHH---HhhCc
Confidence 1233334479999999999 68999999998755544444 33555
No 75
>PF15641 Tox-MPTase5: Metallopeptidase toxin 5
Probab=25.60 E-value=1.2e+02 Score=24.92 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=17.8
Q ss_pred HHHHHHHhhcchhhhhhHHhhhHHHHHHH
Q 022031 197 ETAKLLETVVYPEEITHCAAGVRWFRYLC 225 (303)
Q Consensus 197 ~sa~iL~~iI~~DEI~HV~~G~rWf~~lc 225 (303)
.|.+.|..+|.+||..| |||.+=.
T Consensus 59 ~sra~lr~~iiheelhh-----rw~~rgl 82 (109)
T PF15641_consen 59 SSRAELRNTIIHEELHH-----RWWKRGL 82 (109)
T ss_pred hHHHHHHHHHHHHHHHH-----HHHHhhc
Confidence 45667776788888887 8998653
No 76
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=24.90 E-value=2.2e+02 Score=28.31 Aligned_cols=100 Identities=14% Similarity=0.170 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhhHHHHHHHhhhhHhhc--------------------
Q 022031 119 FVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHCVHEAR-------------------- 178 (303)
Q Consensus 119 wl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~a~~T~~dllaRmAvvp~vlEAr-------------------- 178 (303)
....+..|+-|-..|.--++.|+.. | .-+++... +...+..|...+-.+.+.-
T Consensus 109 ~~~q~~~E~IHs~sYs~il~tl~~~----~--~e~f~~~~-~~~~i~~K~~~i~~~y~~~~~~~~~~~~~~~~~~~~~~~ 181 (376)
T PRK09101 109 IETWSFSETIHSRSYTHIIRNIVND----P--SVVFDDIV-TNEEILKRAKDISSYYDDLIEMTSYYHLLGEGTHTVNGK 181 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC----H--HHHHHHHH-hCHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccccc
Confidence 3467789999999999999999652 2 24666543 4567888887776655432
Q ss_pred CCCC-CHHHHHH-------------------------HHcCCCh-HHHHHHHhhcchhhhhhHHhhhHHHHHHHH
Q 022031 179 GLDV-LPTTISR-------------------------FRNGGDN-ETAKLLETVVYPEEITHCAAGVRWFRYLCL 226 (303)
Q Consensus 179 GLD~-~p~~i~k-------------------------l~~~GD~-~sa~iL~~iI~~DEI~HV~~G~rWf~~lc~ 226 (303)
+.+. +..+.++ |.+.|-. .++++++ -|.+||.-|+.+|..=|+.+..
T Consensus 182 ~~~~~~~~~~~~l~~~lva~~~lEgi~FyssFa~~~~l~~~g~m~g~~~~i~-~I~RDE~lH~~~~~~l~~~l~~ 255 (376)
T PRK09101 182 TVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIR-LIARDEALHLTGTQHMLNLMRS 255 (376)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence 1100 1111222 2345554 4577888 6899999999999888888865
No 77
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=24.25 E-value=3.1e+02 Score=23.96 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=23.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 022031 116 FTDFVKVAQDEGRHFTLLAARLEELGSS 143 (303)
Q Consensus 116 y~Dwl~VA~DEarHF~Ll~~rL~eLG~~ 143 (303)
..=+-+.+.++..|+-.+.+||..+|..
T Consensus 57 H~~lee~~~~~~~~~D~iAERi~~lGg~ 84 (162)
T PRK09448 57 HEMLDGFRTALEDHLDTMAERAVQLGGV 84 (162)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcCCC
Confidence 4445577889999999999999999974
No 78
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=23.74 E-value=88 Score=24.58 Aligned_cols=26 Identities=27% Similarity=0.176 Sum_probs=17.2
Q ss_pred HHHHHHHH-------HHHHHHHHHHHHhCCCCC
Q 022031 120 VKVAQDEG-------RHFTLLAARLEELGSSYG 145 (303)
Q Consensus 120 l~VA~DEa-------rHF~Ll~~rL~eLG~~YG 145 (303)
+++.+||. .|-.|+++.|+++|.+-.
T Consensus 2 ~~nl~dE~G~G~~~~~H~~Lf~~~L~~~Gi~~~ 34 (106)
T PF14518_consen 2 AENLWDEMGNGDPERSHPELFRRFLRALGIDDE 34 (106)
T ss_dssp HHHHHHHTTTT-GGG-HHHHHHHHHHHTT----
T ss_pred HHHHHHHhCCCCccccHHHHHHHHHHHcCCCCc
Confidence 45556665 799999999999998754
No 79
>COG2733 Predicted membrane protein [Function unknown]
Probab=22.21 E-value=3.3e+02 Score=27.98 Aligned_cols=115 Identities=25% Similarity=0.217 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccc----hhhHHHHH-------hhhh
Q 022031 94 AIDLSWDIVARFGKQEAMPREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAH----DGLWDSAI-------ATSK 162 (303)
Q Consensus 94 AIdLa~Dav~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H----~gLW~~a~-------~T~~ 162 (303)
|..--+|.+.|=++ +.|+.+||+ |+.--.+--+|=-=+.+|.++.-.+.=+=+.- +-+|.+.. ++.+
T Consensus 237 a~~~~~D~v~~~p~-h~~rk~~~R-~~~~~i~~L~~Dp~~~~r~e~iK~~~~~~~~i~~~~~~~w~~~~~~l~~D~e~~~ 314 (415)
T COG2733 237 AVNSFLDEVRRDPD-HKMRKDFDR-FLFDLIDDLYHDPGMAARAEAIKSYLKEDEAIATAAGDMWTSLSEWLKEDYESED 314 (415)
T ss_pred HHHHHHHHHHhCcC-ccchHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCch
Confidence 33444677888554 579999999 88877777777655666666665544333333 34777662 2333
Q ss_pred hHHH-HHH-HhhhhHhhcCCCCCHHHHHHHHcCCChHHHHHHHhhcchhhhhhH
Q 022031 163 DLLA-RLA-IEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHC 214 (303)
Q Consensus 163 dlla-RmA-vvp~vlEArGLD~~p~~i~kl~~~GD~~sa~iL~~iI~~DEI~HV 214 (303)
|.+. |++ ++..+.|. |-..+.+..|+.+.=-..++.+++. ++.||+|.
T Consensus 315 s~l~~~l~~~~~~~Ge~--l~~D~~lr~kln~~~~~aa~~l~e~--~~~~it~~ 364 (415)
T COG2733 315 SMLRKRLARAVQSVGEE--LIADDALRAKLNEHLVQAAERLAEE--KHAEITKH 364 (415)
T ss_pred hHHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHHHHHH--HhHHHHHH
Confidence 3332 232 22334443 4455667777765444566667773 77788763
No 80
>PHA02891 hypothetical protein; Provisional
Probab=22.15 E-value=71 Score=26.74 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.1
Q ss_pred hcCCCCCHHHHHHHHcCCChHH
Q 022031 177 ARGLDVLPTTISRFRNGGDNET 198 (303)
Q Consensus 177 ArGLD~~p~~i~kl~~~GD~~s 198 (303)
.||-|.||.|++||-+.=|.++
T Consensus 11 KrGkDITPSMi~kFi~~ld~e~ 32 (120)
T PHA02891 11 KRGKDITPSMIKKFIELLDIEA 32 (120)
T ss_pred hccCCCCHHHHHHHHHHhcHHH
Confidence 6899999999999988777665
No 81
>PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A ....
Probab=21.82 E-value=60 Score=26.13 Aligned_cols=21 Identities=29% Similarity=0.718 Sum_probs=16.4
Q ss_pred hHHHHHHHH-HHHHHhcCCCCCCCh
Q 022031 90 TESWAIDLS-WDIVARFGKQEAMPR 113 (303)
Q Consensus 90 IE~~AIdLa-~Dav~RF~~~~~lP~ 113 (303)
.=.+|||.| ||+..|.. ++|.
T Consensus 91 ~a~aaid~AlwDl~gK~~---g~Pl 112 (117)
T PF02746_consen 91 AAKAAIDMALWDLLGKIA---GQPL 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHH---TSBH
T ss_pred HHHHHHHHHHHHHHHHHc---CCCH
Confidence 345899999 99999984 5663
No 82
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=20.57 E-value=3.2e+02 Score=27.35 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=60.4
Q ss_pred ChhHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccchhhHHHHHhhhhhHHHHHHHhhhhHhhcCCCCCHHHHHH
Q 022031 112 PREFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHCVHEARGLDVLPTTISR 189 (303)
Q Consensus 112 P~~Fy~Dwl~VA~DEarHF~Ll~~rL~eLG~~YGd~P~H~gLW~~a~~T~~dllaRmAvvp~vlEArGLD~~p~~i~k 189 (303)
-.+||.++++.+.+=-+-|-=|.+--+++|.-|-++.||.- +.|+..-..-.+--||.+|..|+..-..+..-
T Consensus 144 tae~Ykglveh~~~ml~a~y~lsqt~k~FGd~F~~i~vhEp-----Qq~AsEAF~~Fgd~HR~ieK~g~~~~k~ikpm 216 (429)
T KOG3651|consen 144 TAEFYKGLVEHFGDMLQAQYKLSQTQKEFGDIFCDIAVHEP-----QQTASEAFSSFGDKHRMIEKKGSESAKPIKPM 216 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCc-----chhHHHHHHHHHHHHHHHHHhccchhhhhhHH
Confidence 47899999999999888888889999999999999999987 55566666677888999999998765544333
No 83
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=20.50 E-value=1e+02 Score=30.56 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 022031 120 VKVAQDEGRHFTLLAARLEEL 140 (303)
Q Consensus 120 l~VA~DEarHF~Ll~~rL~eL 140 (303)
-++|.||++|+.-+.+-++++
T Consensus 191 ~~IA~DE~rH~~fy~~iv~~~ 211 (330)
T PF03405_consen 191 GRIAADEARHEAFYRNIVEAY 211 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHH
Confidence 378999999999999888773
Done!