Query 022032
Match_columns 303
No_of_seqs 183 out of 1150
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 07:30:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022032.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022032hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13932 stationary phase surv 100.0 3.5E-65 7.6E-70 474.5 23.2 200 64-278 3-204 (257)
2 PF01975 SurE: Survival protei 100.0 3.1E-65 6.7E-70 458.1 18.0 190 67-263 1-195 (196)
3 PRK13933 stationary phase surv 100.0 2.5E-64 5.4E-69 468.0 22.9 199 67-278 1-202 (253)
4 PRK13935 stationary phase surv 100.0 2.7E-64 5.8E-69 467.7 22.6 196 67-277 1-198 (253)
5 COG0496 SurE Predicted acid ph 100.0 1.6E-64 3.4E-69 468.1 20.7 198 67-277 1-200 (252)
6 TIGR00087 surE 5'/3'-nucleotid 100.0 5.1E-64 1.1E-68 463.6 22.7 201 67-278 1-205 (244)
7 PRK00346 surE 5'(3')-nucleotid 100.0 7E-64 1.5E-68 464.3 22.8 198 67-278 1-199 (250)
8 PRK13931 stationary phase surv 100.0 5.5E-64 1.2E-68 467.5 22.0 205 67-278 1-210 (261)
9 PRK13934 stationary phase surv 100.0 5.4E-63 1.2E-67 461.5 22.4 198 67-278 1-205 (266)
10 cd03784 GT1_Gtf_like This fami 91.2 1.2 2.5E-05 42.8 8.7 39 67-106 1-40 (401)
11 PLN02846 digalactosyldiacylgly 90.5 1.6 3.4E-05 44.7 9.3 40 65-105 3-48 (462)
12 PRK10307 putative glycosyl tra 89.1 7.8 0.00017 37.3 12.5 36 67-103 1-41 (412)
13 PLN02871 UDP-sulfoquinovose:DA 88.7 9.1 0.0002 38.0 13.0 41 64-105 56-102 (465)
14 PF04007 DUF354: Protein of un 88.4 1.1 2.3E-05 44.0 6.1 105 67-197 1-111 (335)
15 PRK00726 murG undecaprenyldiph 85.6 5.5 0.00012 37.5 9.1 37 67-104 2-39 (357)
16 PF14336 DUF4392: Domain of un 84.1 1.7 3.6E-05 41.8 4.9 108 80-197 63-183 (291)
17 cd03814 GT1_like_2 This family 83.3 18 0.00039 32.5 11.0 28 79-107 17-44 (364)
18 TIGR00661 MJ1255 conserved hyp 81.0 6 0.00013 37.3 7.3 31 154-198 92-122 (321)
19 TIGR01426 MGT glycosyltransfer 80.8 2.9 6.3E-05 40.2 5.2 24 82-106 12-35 (392)
20 cd03785 GT1_MurG MurG is an N- 80.3 14 0.00031 34.2 9.5 36 68-104 1-37 (350)
21 PF13439 Glyco_transf_4: Glyco 74.9 5.7 0.00012 32.1 4.6 42 69-111 1-46 (177)
22 PRK09864 putative peptidase; P 74.9 10 0.00022 37.6 7.2 143 73-222 165-340 (356)
23 PF13477 Glyco_trans_4_2: Glyc 74.2 20 0.00044 28.7 7.7 102 69-197 3-107 (139)
24 TIGR01133 murG undecaprenyldip 73.8 20 0.00044 33.1 8.6 35 68-103 2-37 (348)
25 cd03820 GT1_amsD_like This fam 68.5 33 0.00072 30.1 8.3 37 69-106 2-42 (348)
26 cd03816 GT1_ALG1_like This fam 67.5 12 0.00027 36.6 5.9 38 64-103 3-40 (415)
27 cd03802 GT1_AviGT4_like This f 67.2 11 0.00025 34.0 5.2 39 67-106 1-48 (335)
28 TIGR03107 glu_aminopep glutamy 65.3 23 0.00049 35.0 7.2 133 81-222 182-340 (350)
29 PRK00654 glgA glycogen synthas 65.3 28 0.00061 34.7 8.1 24 82-106 23-46 (466)
30 PF04007 DUF354: Protein of un 61.4 8.1 0.00018 37.9 3.3 26 156-196 249-274 (335)
31 COG0726 CDA1 Predicted xylanas 58.4 17 0.00036 32.0 4.5 29 67-95 65-93 (267)
32 PRK15405 ethanolamine utilizat 57.3 61 0.0013 30.4 8.1 101 80-187 46-201 (217)
33 PF13579 Glyco_trans_4_4: Glyc 56.0 13 0.00028 29.4 3.1 98 82-198 7-105 (160)
34 PRK12446 undecaprenyldiphospho 55.4 85 0.0018 30.4 9.2 34 154-198 90-123 (352)
35 PF03033 Glyco_transf_28: Glyc 55.0 11 0.00024 30.4 2.6 25 82-107 15-39 (139)
36 cd04962 GT1_like_5 This family 54.2 79 0.0017 29.1 8.5 35 69-104 5-39 (371)
37 PRK06849 hypothetical protein; 53.8 20 0.00043 34.9 4.6 37 64-104 2-38 (389)
38 cd03825 GT1_wcfI_like This fam 53.0 16 0.00035 33.3 3.6 38 67-105 1-41 (365)
39 cd03805 GT1_ALG2_like This fam 52.6 18 0.00038 34.0 3.9 37 67-104 1-40 (392)
40 cd03791 GT1_Glycogen_synthase_ 49.6 39 0.00084 33.2 5.9 24 82-106 22-45 (476)
41 cd03141 GATase1_Hsp31_like Typ 49.2 19 0.00041 32.7 3.4 32 74-106 17-48 (221)
42 cd03800 GT1_Sucrose_synthase T 48.8 1.4E+02 0.003 27.7 9.2 26 79-105 24-49 (398)
43 TIGR00045 glycerate kinase. Th 46.8 1.1E+02 0.0024 30.8 8.6 72 154-227 282-368 (375)
44 PRK08220 2,3-dihydroxybenzoate 46.3 1E+02 0.0022 27.1 7.6 79 64-163 6-84 (252)
45 PF00381 PTS-HPr: PTS HPr comp 44.8 20 0.00044 27.6 2.5 33 67-100 4-36 (84)
46 PRK07856 short chain dehydroge 44.6 1E+02 0.0022 27.4 7.4 37 64-105 4-41 (252)
47 PF07075 DUF1343: Protein of u 43.7 70 0.0015 32.1 6.7 111 69-197 2-119 (365)
48 cd06167 LabA_like LabA_like pr 43.0 39 0.00085 27.9 4.2 30 68-103 103-132 (149)
49 PLN02939 transferase, transfer 42.1 1E+02 0.0022 34.9 8.1 41 64-105 479-526 (977)
50 PLN02316 synthase/transferase 41.2 1.2E+02 0.0025 34.6 8.6 24 82-106 610-633 (1036)
51 PRK11780 isoprenoid biosynthes 40.9 34 0.00074 31.4 3.8 38 67-105 4-44 (217)
52 COG1817 Uncharacterized protei 39.8 20 0.00043 35.7 2.1 22 175-198 259-280 (346)
53 PRK10342 glycerate kinase I; P 39.1 1.8E+02 0.0038 29.5 8.7 43 154-198 283-325 (381)
54 cd03817 GT1_UGDG_like This fam 37.6 49 0.0011 29.5 4.2 28 78-106 16-43 (374)
55 cd03798 GT1_wlbH_like This fam 37.3 2.9E+02 0.0062 24.3 9.1 29 80-109 18-46 (377)
56 cd03132 GATase1_catalase Type 36.6 99 0.0021 25.4 5.6 35 69-106 6-40 (142)
57 PRK12342 hypothetical protein; 36.2 77 0.0017 30.1 5.4 55 136-198 91-145 (254)
58 PRK03359 putative electron tra 35.9 80 0.0017 30.0 5.5 55 136-198 94-148 (256)
59 COG1091 RfbD dTDP-4-dehydrorha 35.7 1.3E+02 0.0029 29.0 7.0 61 134-199 34-102 (281)
60 cd01477 vWA_F09G8-8_type VWA F 35.3 59 0.0013 29.1 4.3 35 65-101 132-168 (193)
61 PLN00016 RNA-binding protein; 35.2 51 0.0011 31.8 4.2 39 65-104 51-90 (378)
62 TIGR03449 mycothiol_MshA UDP-N 35.0 98 0.0021 29.4 6.0 24 80-104 24-47 (405)
63 cd01482 vWA_collagen_alphaI-XI 34.8 63 0.0014 27.3 4.3 34 65-101 104-137 (164)
64 PLN00414 glycosyltransferase f 34.8 1.8E+02 0.0039 29.6 8.1 27 82-109 21-47 (446)
65 KOG2585 Uncharacterized conser 34.0 20 0.00042 36.9 1.1 98 64-164 264-366 (453)
66 PRK09932 glycerate kinase II; 33.9 2.3E+02 0.0049 28.7 8.6 43 154-198 283-325 (381)
67 PRK11249 katE hydroperoxidase 32.0 1.4E+02 0.003 32.9 7.2 40 65-105 596-635 (752)
68 PRK06171 sorbitol-6-phosphate 32.0 3E+02 0.0066 24.4 8.4 75 65-161 8-83 (266)
69 PRK06843 inosine 5-monophospha 31.7 1E+02 0.0022 31.3 5.8 102 82-196 154-263 (404)
70 PRK15415 propanediol utilizati 31.4 62 0.0013 31.2 4.0 55 133-188 185-242 (266)
71 TIGR03568 NeuC_NnaA UDP-N-acet 31.2 2.6E+02 0.0056 27.3 8.3 102 82-199 16-127 (365)
72 PF08323 Glyco_transf_5: Starc 30.9 48 0.001 30.5 3.1 22 82-104 22-43 (245)
73 PF01936 NYN: NYN domain; Int 30.9 44 0.00096 27.1 2.6 29 68-102 99-127 (146)
74 cd03808 GT1_cap1E_like This fa 30.6 52 0.0011 29.0 3.2 37 70-107 4-40 (359)
75 cd01475 vWA_Matrilin VWA_Matri 30.2 73 0.0016 28.6 4.1 34 65-101 109-142 (224)
76 TIGR01918 various_sel_PB selen 30.1 53 0.0012 33.7 3.5 40 154-196 75-114 (431)
77 TIGR01917 gly_red_sel_B glycin 30.1 54 0.0012 33.7 3.5 40 154-196 75-114 (431)
78 PRK12767 carbamoyl phosphate s 29.9 72 0.0016 29.8 4.2 34 67-105 2-36 (326)
79 PRK14099 glycogen synthase; Pr 29.4 1.3E+02 0.0027 30.7 6.1 22 82-104 26-47 (485)
80 PLN02208 glycosyltransferase f 29.3 2.1E+02 0.0046 29.0 7.6 26 82-108 21-46 (442)
81 PF01205 UPF0029: Uncharacteri 28.9 71 0.0015 26.6 3.5 32 69-101 50-83 (110)
82 smart00775 LNS2 LNS2 domain. T 28.9 61 0.0013 28.0 3.2 18 76-93 26-43 (157)
83 cd03794 GT1_wbuB_like This fam 28.9 92 0.002 27.7 4.5 28 79-107 17-44 (394)
84 PF13528 Glyco_trans_1_3: Glyc 28.7 58 0.0013 29.9 3.3 32 154-199 93-124 (318)
85 PLN02695 GDP-D-mannose-3',5'-e 28.3 1.2E+02 0.0026 29.4 5.5 37 61-101 16-52 (370)
86 cd01476 VWA_integrin_invertebr 27.4 93 0.002 25.8 4.0 34 66-102 105-139 (163)
87 PF02595 Gly_kinase: Glycerate 26.7 62 0.0013 32.6 3.2 61 133-198 265-325 (377)
88 cd03796 GT1_PIG-A_like This fa 26.6 91 0.002 30.0 4.3 26 78-104 16-41 (398)
89 PHA03392 egt ecdysteroid UDP-g 25.8 59 0.0013 33.5 3.0 37 68-105 22-60 (507)
90 PRK00025 lpxB lipid-A-disaccha 25.6 75 0.0016 30.1 3.4 18 176-195 269-286 (380)
91 PRK15005 universal stress prot 25.4 1.4E+02 0.003 24.0 4.6 34 130-169 87-120 (144)
92 KOG2749 mRNA cleavage and poly 25.4 1.6E+02 0.0034 30.2 5.7 59 9-102 188-247 (415)
93 PRK06398 aldose dehydrogenase; 25.2 4.7E+02 0.01 23.4 8.5 72 66-161 6-78 (258)
94 cd01450 vWFA_subfamily_ECM Von 25.0 1.3E+02 0.0028 24.2 4.3 34 65-101 104-139 (161)
95 TIGR01003 PTS_HPr_family Phosp 24.6 1.1E+02 0.0023 23.7 3.6 34 67-101 4-37 (82)
96 TIGR02095 glgA glycogen/starch 24.6 75 0.0016 31.5 3.4 24 82-106 23-46 (473)
97 TIGR01382 PfpI intracellular p 24.3 1E+02 0.0022 25.9 3.7 30 74-104 7-36 (166)
98 TIGR01133 murG undecaprenyldip 24.3 82 0.0018 29.1 3.4 22 175-197 257-278 (348)
99 cd01473 vWA_CTRP CTRP for CS 23.7 1.3E+02 0.0028 26.6 4.5 34 65-101 109-146 (192)
100 PF00201 UDPGT: UDP-glucoronos 23.6 34 0.00074 34.0 0.8 35 69-104 3-37 (500)
101 COG0300 DltE Short-chain dehyd 23.5 97 0.0021 29.7 3.8 37 64-105 4-41 (265)
102 PF07355 GRDB: Glycine/sarcosi 23.3 85 0.0019 31.4 3.4 39 154-195 79-117 (349)
103 PRK09288 purT phosphoribosylgl 23.0 4.7E+02 0.01 25.2 8.5 38 64-106 10-47 (395)
104 smart00368 LRR_RI Leucine rich 22.8 86 0.0019 19.4 2.3 25 66-90 3-27 (28)
105 PRK06179 short chain dehydroge 22.8 4.9E+02 0.011 23.1 8.1 75 67-162 5-80 (270)
106 PF10841 DUF2644: Protein of u 22.7 32 0.0007 26.1 0.3 24 70-93 3-27 (60)
107 TIGR03590 PseG pseudaminic aci 22.1 1E+02 0.0023 28.8 3.7 29 155-198 241-269 (279)
108 PRK13782 phosphocarrier protei 22.1 1.1E+02 0.0024 23.6 3.2 33 68-101 5-37 (82)
109 cd01458 vWA_ku Ku70/Ku80 N-ter 22.0 1.6E+02 0.0034 26.3 4.7 39 65-104 128-172 (218)
110 COG1926 Predicted phosphoribos 21.7 1E+02 0.0023 28.9 3.5 66 69-148 127-193 (220)
111 cd03134 GATase1_PfpI_like A ty 21.5 1.4E+02 0.003 25.0 4.0 29 74-103 7-35 (165)
112 COG1929 Glycerate kinase [Carb 21.4 1.2E+02 0.0025 30.8 3.9 43 154-198 283-325 (378)
113 PF04230 PS_pyruv_trans: Polys 21.3 81 0.0017 27.2 2.6 21 178-198 265-285 (286)
114 PRK06182 short chain dehydroge 21.3 1.6E+02 0.0035 26.4 4.7 78 66-162 3-81 (273)
115 TIGR00201 comF comF family pro 20.7 1.3E+02 0.0029 26.5 3.9 34 66-101 152-187 (190)
116 PRK08628 short chain dehydroge 20.4 4E+02 0.0086 23.5 6.9 87 63-163 4-91 (258)
117 PRK05584 5'-methylthioadenosin 20.3 2.8E+02 0.006 24.8 5.9 48 178-225 175-227 (230)
118 PF11977 RNase_Zc3h12a: Zc3h12 20.2 67 0.0014 27.6 1.8 32 73-105 18-49 (155)
119 PRK08334 translation initiatio 20.1 1.4E+02 0.003 30.0 4.2 43 154-196 237-279 (356)
No 1
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=3.5e-65 Score=474.51 Aligned_cols=200 Identities=36% Similarity=0.508 Sum_probs=175.7
Q ss_pred CCCCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEeeCCCCcccccccCCCCceEEEEeeeC-CceeEEecCChHHHH
Q 022032 64 SSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEIN-GATAYEVSGTPVDCV 142 (303)
Q Consensus 64 ~~~~~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~~-g~~~yaV~GTPaDCV 142 (303)
.++|||||||||||+||||++|+++|++.| +|+||||++||||+||+||+++||++++++.. +..+|+|+|||+|||
T Consensus 3 ~~~M~ILltNDDGi~a~Gi~aL~~~l~~~g--~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDCV 80 (257)
T PRK13932 3 DKKPHILVCNDDGIEGEGIHVLAASMKKIG--RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVDCI 80 (257)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHhCC--CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHHHH
Confidence 356899999999999999999999999886 89999999999999999999999999998744 556899999999999
Q ss_pred HHHHhccccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEecccCCCCCCCcChHHHHHHHHHHHHH
Q 022032 143 SLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINA 222 (303)
Q Consensus 143 ~laL~~~l~~~~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~~~~~~~~~~d~~~aa~~~~~li~~ 222 (303)
++||..++. .+|||||||||+|.|+|.+++||||||||+||+++||||||||+.+.. ..+|+.+++++.+++++
T Consensus 81 ~lal~~~~~--~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~~~~----~~~~~~aa~~~~~l~~~ 154 (257)
T PRK13932 81 KVALSHILP--EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLTTYE----NADFTYAGKFARKLARK 154 (257)
T ss_pred HHHHHhhcC--CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcccCC----cCCHHHHHHHHHHHHHH
Confidence 999998764 589999999999999999999999999999999999999999996421 23799999998888876
Q ss_pred HHHHhhcCCCCCCcEEEecCCCCCC-CCCceEEEecCCcccCCcccccccccCCCCC
Q 022032 223 ATRDIGKGIFPRSCLLNVEIPTSPL-TNKGFKFTKQSMWRSTPNWQAVSANRYPAGH 278 (303)
Q Consensus 223 l~~~~~~~~lp~~~~LNVN~P~~~~-~~kGvk~Tr~g~~~~~~~~~~~~~~r~p~g~ 278 (303)
+. +..+|++++||||||.++. +.+|+|+||||++.|... +..+.||+|+
T Consensus 155 l~----~~~~p~~~~LNVN~P~~~~~~~~gik~t~~g~~~~~~~---~~~~~dp~g~ 204 (257)
T PRK13932 155 VL----REGLPPDTILSVNIPNVPESDIQGVLITRQGRSRWEED---AIERHDMYGN 204 (257)
T ss_pred HH----hcCCCCCcEEEEEeCCCCccccCCEEEeeCCCcccccc---eEEeECcCCC
Confidence 54 4568999999999999874 689999999999987643 3445588873
No 2
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=100.00 E-value=3.1e-65 Score=458.05 Aligned_cols=190 Identities=43% Similarity=0.670 Sum_probs=156.1
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEeeCCCCcccccccCCCCceEEEEee----eCCceeEEecCChHHHH
Q 022032 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAE----INGATAYEVSGTPVDCV 142 (303)
Q Consensus 67 ~~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~----~~g~~~yaV~GTPaDCV 142 (303)
|||||||||||+||||++|+++|++.| |+|+||||++||||+||++|+++|++++++. ..+.++|+|+|||+|||
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~L~~~g-~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv 79 (196)
T PF01975_consen 1 MRILLTNDDGIDAPGIRALAKALSALG-HDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCV 79 (196)
T ss_dssp SEEEEE-SS-TTSHHHHHHHHHHTTTS-SEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHH
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhcC-CeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHH
Confidence 899999999999999999999998887 7999999999999999999999999998875 35678999999999999
Q ss_pred HHHHhccccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEecccCCCCCCCcChHHHHHHHHHHHHH
Q 022032 143 SLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINA 222 (303)
Q Consensus 143 ~laL~~~l~~~~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~~~~~~~~~~d~~~aa~~~~~li~~ 222 (303)
++||+.+++ +.+|||||||||+|.|+|.+++||||||||+||+++||||||||++.... ....+|+.+++++.+++++
T Consensus 80 ~~al~~~~~-~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~~~~-~~~~~~~~aa~~~~~~i~~ 157 (196)
T PF01975_consen 80 KLALDGLLP-DKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDSDSE-SKDPDFETAARFAVKLIEK 157 (196)
T ss_dssp HHHHHCTST-TSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEESSST--SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhc-cCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccccCC-CcHHHHHHHHHHHHHHHHH
Confidence 999999764 35699999999999999999999999999999999999999999986532 2334799999998888877
Q ss_pred HHHHhhcCCCCCCcEEEecCCCCCC-CCCceEEEecCCcccC
Q 022032 223 ATRDIGKGIFPRSCLLNVEIPTSPL-TNKGFKFTKQSMWRST 263 (303)
Q Consensus 223 l~~~~~~~~lp~~~~LNVN~P~~~~-~~kGvk~Tr~g~~~~~ 263 (303)
+. +..+|++++||||||.++. +.+|+|+||+|+++|.
T Consensus 158 ~~----~~~~~~~~~lNVN~P~~~~~~~~g~~~t~~g~~~y~ 195 (196)
T PF01975_consen 158 LL----KNPLPPGVVLNVNFPSVPCEEIKGIKVTRLGRRRYK 195 (196)
T ss_dssp HH----HSGSSTTSEEEEEEESS-GGG-SEEEE-B--CCSCE
T ss_pred Hh----hcCCCCCcEEEEEcCCCCcccCCCEEEEECCcceeC
Confidence 64 5567899999999999774 6899999999999875
No 3
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=2.5e-64 Score=467.96 Aligned_cols=199 Identities=33% Similarity=0.510 Sum_probs=174.0
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEeeCCCCcccccccCCCCceEEEEeeeC--CceeEEecCChHHHHHH
Q 022032 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEIN--GATAYEVSGTPVDCVSL 144 (303)
Q Consensus 67 ~~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~~--g~~~yaV~GTPaDCV~l 144 (303)
|||||||||||+||||++|+++|++. |+|+||||++||||+||+||+++||++++++.. +.++|+|+|||||||++
T Consensus 1 M~ILvtNDDGi~apGl~aL~~~l~~~--~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~v~GTPaDcV~l 78 (253)
T PRK13933 1 MNILLTNDDGINAEGINTLAELLSKY--HEVIIVAPENQRSASSHSITIYEPIIIKEVKLEGINSKAYSISGTPADCVRV 78 (253)
T ss_pred CeEEEEcCCCCCChhHHHHHHHHHhC--CcEEEEccCCCCccccccccCCCCeEEEeeccCCCCccEEEECCcHHHHHHH
Confidence 78999999999999999999999874 599999999999999999999999999998744 34689999999999999
Q ss_pred HHhccccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEecccCCCCCCCcChHHHHHHHHHHHHHHH
Q 022032 145 ALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAAT 224 (303)
Q Consensus 145 aL~~~l~~~~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~~~~~~~~~~d~~~aa~~~~~li~~l~ 224 (303)
||++++. .+|||||||||+|.|+|.+++||||||||+||+++||||||||+..... .+.+|+.+++++.++++++.
T Consensus 79 al~~l~~--~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~~~~~~--~~~~~~~a~~~~~~lv~~l~ 154 (253)
T PRK13933 79 ALDKLVP--DNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSADVKKG--KDENYKIAAKYALEVLNILK 154 (253)
T ss_pred HHHHhcC--CCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEeccCCC--CcccHHHHHHHHHHHHHHHH
Confidence 9998653 6899999999999999999999999999999999999999999964211 12369999999888888764
Q ss_pred HHhhcCCCCCCcEEEecCCCCCC-CCCceEEEecCCcccCCcccccccccCCCCC
Q 022032 225 RDIGKGIFPRSCLLNVEIPTSPL-TNKGFKFTKQSMWRSTPNWQAVSANRYPAGH 278 (303)
Q Consensus 225 ~~~~~~~lp~~~~LNVN~P~~~~-~~kGvk~Tr~g~~~~~~~~~~~~~~r~p~g~ 278 (303)
+..+|++++||||||.++. +++|+|+||||++.|...+ ..+.||+|+
T Consensus 155 ----~~~~p~~~~lNvNiP~~~~~~~~g~k~t~~g~r~y~~~~---~~~~dp~g~ 202 (253)
T PRK13933 155 ----KEDLKNDVVLNLNVPFCSEEEIKGIKVCKVGNKTFNTYF---SEEIDEEGN 202 (253)
T ss_pred ----hcCCCCCcEEEEecCCCchhhcCCeEEEeCCccccCCce---EEEECCCCC
Confidence 4578999999999999874 6899999999999877433 445588873
No 4
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=2.7e-64 Score=467.67 Aligned_cols=196 Identities=37% Similarity=0.585 Sum_probs=172.8
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEeeCCCCcccccccCCCCceEEEEeee-CCceeEEecCChHHHHHHH
Q 022032 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEI-NGATAYEVSGTPVDCVSLA 145 (303)
Q Consensus 67 ~~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~-~g~~~yaV~GTPaDCV~la 145 (303)
|||||||||||+||||++|+++|++. |+|+||||++||||+||+||+++|+++++++. .+..+|+|+|||+|||++|
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~l~~~--~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDcV~la 78 (253)
T PRK13935 1 MNILVTNDDGITSPGIIILAEYLSEK--HEVFVVAPDKERSATGHAITIRVPLWAKKVFISERFVAYATTGTPADCVKLG 78 (253)
T ss_pred CeEEEECCCCCCCHHHHHHHHHHHhC--CcEEEEccCCCCccccccccCCCCceEEEeecCCCccEEEECCcHHHHHHHH
Confidence 78999999999999999999999874 59999999999999999999999999999875 3567899999999999999
Q ss_pred HhccccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEecccCCCCCCCcChHHHHHHHHHHHHHHHH
Q 022032 146 LSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATR 225 (303)
Q Consensus 146 L~~~l~~~~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~~~~~~~~~~d~~~aa~~~~~li~~l~~ 225 (303)
|+.++. .+|||||||||+|.|+|.+++||||||||+||+++||||||||+... ...+|+.+++++.++++++
T Consensus 79 l~~~~~--~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~~~----~~~~~~~aa~~~~~l~~~l-- 150 (253)
T PRK13935 79 YDVIMD--KKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISSADF----ENPDYETAARFLLNFLEEF-- 150 (253)
T ss_pred HHhhcc--CCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEcccC----CccCHHHHHHHHHHHHHHH--
Confidence 998653 68999999999999999999999999999999999999999998521 1237999999988888765
Q ss_pred HhhcCCCCCCcEEEecCCCCCC-CCCceEEEecCCcccCCcccccccccCCCC
Q 022032 226 DIGKGIFPRSCLLNVEIPTSPL-TNKGFKFTKQSMWRSTPNWQAVSANRYPAG 277 (303)
Q Consensus 226 ~~~~~~lp~~~~LNVN~P~~~~-~~kGvk~Tr~g~~~~~~~~~~~~~~r~p~g 277 (303)
.+..+|++++||||||.++. +++|+|+||||+++|...+ ..++||+|
T Consensus 151 --~~~~~p~~~~LNVN~P~~~~~~~~gik~tr~g~~~~~~~~---~~~~dp~g 198 (253)
T PRK13935 151 --DFSLLPPFTALNINVPSVPYGEIKGWKLTRQSRRRYNDYF---EERVDPFG 198 (253)
T ss_pred --HhcCCCCCcEEEEEeCcCChhhcCCeEEeeCCCcccCCce---EEEECCCC
Confidence 45678999999999999874 6899999999999887544 44558876
No 5
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=100.00 E-value=1.6e-64 Score=468.10 Aligned_cols=198 Identities=41% Similarity=0.646 Sum_probs=176.5
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHHHH
Q 022032 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLAL 146 (303)
Q Consensus 67 ~~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~yaV~GTPaDCV~laL 146 (303)
|||||||||||+||||++|+++|+ .+ +||+||||+.||||+||++|+.+||++++++. ..|+|+|||+|||.+||
T Consensus 1 mrILlTNDDGi~a~Gi~aL~~al~-~~-~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~---~~~av~GTPaDCV~lal 75 (252)
T COG0496 1 MRILLTNDDGIHAPGIRALARALR-EG-ADVTVVAPDREQSGASHSLTLHEPLRVRQVDN---GAYAVNGTPADCVILGL 75 (252)
T ss_pred CeEEEecCCccCCHHHHHHHHHHh-hC-CCEEEEccCCCCcccccccccccCceeeEecc---ceEEecCChHHHHHHHH
Confidence 789999999999999999999999 44 69999999999999999999999999999863 67999999999999999
Q ss_pred hccccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEecccCCC-CCCCcChHHHHHHHHHHHHHHHH
Q 022032 147 SGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKD-ESQESDFKDAVSVCLPLINAATR 225 (303)
Q Consensus 147 ~~~l~~~~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~~~~~-~~~~~d~~~aa~~~~~li~~l~~ 225 (303)
+.++. ..+|||||||||.|.|+|.|++||||||||+||+++||||||||+..... .....+|+.|++++..+++++.
T Consensus 76 ~~l~~-~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~~~~~~~~~~~~e~A~~~~~~lv~~l~- 153 (252)
T COG0496 76 NELLK-EPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAYREAFGKQDVDFETAAKVARALVEALL- 153 (252)
T ss_pred HHhcc-CCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehhccccccccccHHHHHHHHHHHHHHHH-
Confidence 98764 24599999999999999999999999999999999999999999986532 2223589999999888888765
Q ss_pred HhhcCCCCCCcEEEecCCCCCC-CCCceEEEecCCcccCCcccccccccCCCC
Q 022032 226 DIGKGIFPRSCLLNVEIPTSPL-TNKGFKFTKQSMWRSTPNWQAVSANRYPAG 277 (303)
Q Consensus 226 ~~~~~~lp~~~~LNVN~P~~~~-~~kGvk~Tr~g~~~~~~~~~~~~~~r~p~g 277 (303)
+..+|...+||||||.++. +++|+|+||+|+++|. ..+..++||||
T Consensus 154 ---~~p~~~~~llNVNiP~~~~~~~~gi~vtr~g~~~~~---~~~~~r~dprG 200 (252)
T COG0496 154 ---ANPLPPDTLLNVNIPNLPLEEIKGIRVTRLGRRRYA---EPVEERTDPRG 200 (252)
T ss_pred ---hCCCCCCcEEEEeCCCCCccccCcEEEEechhhhcc---CccceeeCCCC
Confidence 4478889999999999865 7999999999988887 56677889998
No 6
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=100.00 E-value=5.1e-64 Score=463.59 Aligned_cols=201 Identities=39% Similarity=0.573 Sum_probs=174.8
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEeeCCCCcccccccCCCCceEEEEeee-CCceeEEecCChHHHHHHH
Q 022032 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEI-NGATAYEVSGTPVDCVSLA 145 (303)
Q Consensus 67 ~~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~-~g~~~yaV~GTPaDCV~la 145 (303)
|||||||||||+||||++|+++|++.| +|+||||++||||+||++|+++||++++++. ++.++|+|+|||||||++|
T Consensus 1 M~ILltNDDGi~a~Gi~aL~~~l~~~g--~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~~~v~GTPaDcv~~g 78 (244)
T TIGR00087 1 MKILLTNDDGIHSPGIRALYQALKELG--EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGAHIYAVDGTPTDCVILG 78 (244)
T ss_pred CeEEEECCCCCCCHhHHHHHHHHHhCC--CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCccEEEEcCcHHHHHHHH
Confidence 789999999999999999999999987 8999999999999999999999999999874 3557899999999999999
Q ss_pred HhccccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEecccCCCC--CCCcChHHHHHHHHHHHHHH
Q 022032 146 LSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDE--SQESDFKDAVSVCLPLINAA 223 (303)
Q Consensus 146 L~~~l~~~~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~~~~~~--~~~~d~~~aa~~~~~li~~l 223 (303)
|++++. ++|||||||||+|.|+|.+++||||||||+||+++||||||||+.+.... ....+|+.+++++.++++++
T Consensus 79 l~~l~~--~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~~~~~~~~~~~~~~~~~aa~~~~~li~~l 156 (244)
T TIGR00087 79 INELMP--EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISLQIFNGYKNSSPLDFDIAAKVTNAIVKNL 156 (244)
T ss_pred HHHhcc--CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEecccCcccccccccHHHHHHHHHHHHHHH
Confidence 998653 58999999999999999999999999999999999999999999643211 11336999999988888776
Q ss_pred HHHhhcCCCCCCcEEEecCCCCCC-CCCceEEEecCCcccCCcccccccccCCCCC
Q 022032 224 TRDIGKGIFPRSCLLNVEIPTSPL-TNKGFKFTKQSMWRSTPNWQAVSANRYPAGH 278 (303)
Q Consensus 224 ~~~~~~~~lp~~~~LNVN~P~~~~-~~kGvk~Tr~g~~~~~~~~~~~~~~r~p~g~ 278 (303)
+ +..+|++++||||||.++. +.+|+|+|||++++|...+. .+.||+|+
T Consensus 157 ~----~~~~p~~~~lNVN~P~~~~~~~~g~~~t~~~~~~~~~~~~---~~~d~~g~ 205 (244)
T TIGR00087 157 L----KNGLPGGDLLNVNVPLVPSIQNTGIRITRLGRRMYATSVE---ERTDPRGR 205 (244)
T ss_pred H----hcCCCCCcEEEEEeCCCCcccCCCEEEEECCccccccCce---EeECCCCC
Confidence 4 4568899999999999874 68999999999988764333 44577773
No 7
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=100.00 E-value=7e-64 Score=464.26 Aligned_cols=198 Identities=37% Similarity=0.579 Sum_probs=172.3
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHHHH
Q 022032 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLAL 146 (303)
Q Consensus 67 ~~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~yaV~GTPaDCV~laL 146 (303)
|||||||||||+||||++|+++|++. |+|+||||++||||+||+||+++||++++++ ..+|+|+|||+|||++||
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~l~~~--~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~---~~~~~v~GTPaDcV~~gl 75 (250)
T PRK00346 1 MRILLTNDDGIHAPGIRALAEALREL--ADVTVVAPDRERSGASHSLTLTRPLRVEKVD---NGFYAVDGTPTDCVHLAL 75 (250)
T ss_pred CeEEEECCCCCCChhHHHHHHHHHhC--CCEEEEeCCCCCcCCcccccCCCCeEEEEec---CCeEEECCcHHHHHHHHH
Confidence 78999999999999999999999987 4999999999999999999999999999975 247999999999999999
Q ss_pred hccccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEecccCCCCCCCcChHHHHHHHHHHHHHHHHH
Q 022032 147 SGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRD 226 (303)
Q Consensus 147 ~~~l~~~~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~~~~~~~~~~d~~~aa~~~~~li~~l~~~ 226 (303)
+.++. ++|||||||||+|.|+|.+++||||||||+||+++||||||||+.+........+|+.+++++.+|+++++
T Consensus 76 ~~l~~--~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~~~~~~~~~~~~~~a~~~~~~li~~l~-- 151 (250)
T PRK00346 76 NGLLD--PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSLAVSEGSRGWRDFETAAKVARELVRKLL-- 151 (250)
T ss_pred Hhhcc--CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEecccccccCchhhHHHHHHHHHHHHHHHH--
Confidence 98764 58999999999999999999999999999999999999999999652111122369999999988888765
Q ss_pred hhcCCCCCCcEEEecCCCCCC-CCCceEEEecCCcccCCcccccccccCCCCC
Q 022032 227 IGKGIFPRSCLLNVEIPTSPL-TNKGFKFTKQSMWRSTPNWQAVSANRYPAGH 278 (303)
Q Consensus 227 ~~~~~lp~~~~LNVN~P~~~~-~~kGvk~Tr~g~~~~~~~~~~~~~~r~p~g~ 278 (303)
+..+|++++||||||.++. +++|+|+||||++.|... +..+.||+|+
T Consensus 152 --~~~~p~~~~lNvN~P~~~~~~~~g~~~t~~g~~~~~~~---~~~~~d~~g~ 199 (250)
T PRK00346 152 --EKPLPPGTLLNVNVPDLPPEEIKGIRVTRLGKRHYAEE---VIKRVDPRGR 199 (250)
T ss_pred --hcCCCCCcEEEEEeCCCCcccCCCEEEEeCCCccccCc---eEEEECcCCC
Confidence 3458999999999999764 689999999999887643 3345588873
No 8
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=5.5e-64 Score=467.46 Aligned_cols=205 Identities=27% Similarity=0.433 Sum_probs=170.8
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcC--CCcEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHH
Q 022032 67 PVLLVTNGDGIESPGLVYLVEALVREG--LYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSL 144 (303)
Q Consensus 67 ~~ILlTNDDGi~SpGI~aL~~aL~~~G--~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~yaV~GTPaDCV~l 144 (303)
|||||||||||+||||++|+++|++.. .++|+||||++||||+||+||+++||++++++ ...|+|+|||||||++
T Consensus 1 M~ILlTNDDGI~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~---~~~yav~GTPaDCV~l 77 (261)
T PRK13931 1 MRILITNDDGINAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELG---PRRFAAEGSPADCVLA 77 (261)
T ss_pred CeEEEEcCCCCCCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeC---CCeEEEcCchHHHHHH
Confidence 689999999999999999999998851 14999999999999999999999999999875 2469999999999999
Q ss_pred HHhccccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEecccCC-CCCCCcChHHHHHHHHHHHHHH
Q 022032 145 ALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKK-DESQESDFKDAVSVCLPLINAA 223 (303)
Q Consensus 145 aL~~~l~~~~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~~~~-~~~~~~d~~~aa~~~~~li~~l 223 (303)
||.+++ .+.+|||||||||+|.|+|.+|+||||||||+||+++||||||||+.+.. ....+.+|+.+++++.+|++++
T Consensus 78 al~~~~-~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~~~~~~~~~~~~~~~~a~~~~~~l~~~~ 156 (261)
T PRK13931 78 ALYDVM-KDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQYYGPRNEGLDDPFEAARTHGARVVRKL 156 (261)
T ss_pred HHHHhc-CCCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEeeccCCCccccccHHHHHHHHHHHHHHH
Confidence 999865 33689999999999999999999999999999999999999999996432 1111236999999999999887
Q ss_pred HHHhhcCCCCCCcEEEecCCCCCC-CCCceEEEecCCcccC-CcccccccccCCCCC
Q 022032 224 TRDIGKGIFPRSCLLNVEIPTSPL-TNKGFKFTKQSMWRST-PNWQAVSANRYPAGH 278 (303)
Q Consensus 224 ~~~~~~~~lp~~~~LNVN~P~~~~-~~kGvk~Tr~g~~~~~-~~~~~~~~~r~p~g~ 278 (303)
++.......|++++||||||.++. +++|+|+||||++.|. .. +..++||+|+
T Consensus 157 l~~~~~~~~~~~~~lNVN~P~~~~~~~~gik~t~~g~~~~~~~~---~~~~~d~~g~ 210 (261)
T PRK13931 157 LEAGPWDDEDYRLFYNVNFPPVPAADVKGIRVAAQGFREGTRFG---VEPHMSPSGR 210 (261)
T ss_pred HhccCCCCCCCCeEEEEEeCcCCcccCCceEEeECCcccccCCc---eEEEECCCCC
Confidence 643222223445899999999874 6899999999998865 33 3345577763
No 9
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=5.4e-63 Score=461.49 Aligned_cols=198 Identities=30% Similarity=0.423 Sum_probs=169.8
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHHHH
Q 022032 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLAL 146 (303)
Q Consensus 67 ~~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~yaV~GTPaDCV~laL 146 (303)
|||||||||||+||||++|+++|++.| +|+||||++||||+||+||+++||++++++..+.++|+|+|||+|||++||
T Consensus 1 M~ILlTNDDGi~apGi~aL~~al~~~g--~V~VvAP~~eqSg~g~aiT~~~pl~~~~~~~~~~~~y~v~GTPaDCV~lal 78 (266)
T PRK13934 1 MKILVTNDDGVHSPGLRLLYEFVSPLG--EVDVVAPETPKSATGLGITLHKPLRMYEVDLCGFKVYATSGTPSDTIYLAT 78 (266)
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhCC--cEEEEccCCCCccccccccCCCCcEEEEeccCCcceEEeCCCHHHHHHHHH
Confidence 789999999999999999999999876 899999999999999999999999999987556789999999999999999
Q ss_pred hccccCCCCCcEEEecCCCCCCCccc-cccchhHHHHHHHHHcCCCeeEEecccCCCCCC---CcChHHHHHHHHHHHHH
Q 022032 147 SGALFSWSKPLLVISGINRGSSCGHH-MFYSGVVAGAREALICGVPSLSISLNWKKDESQ---ESDFKDAVSVCLPLINA 222 (303)
Q Consensus 147 ~~~l~~~~~PDLVVSGIN~G~N~G~d-v~ySGTVgAA~EA~l~GIPAIAvS~~~~~~~~~---~~d~~~aa~~~~~li~~ 222 (303)
..+ +.+|||||||||+|.|+|.+ ++||||||||+||+++||||||||+.+...... ..+|+.+++++.+++++
T Consensus 79 ~~l---~~~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~~~~~~~~~~~~~~~~~~a~~~~~~lv~~ 155 (266)
T PRK13934 79 YGL---GRKYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSAYVDDWEELLEDGEALEIMKAVVRATAEY 155 (266)
T ss_pred Hhc---cCCCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEecccCCcccccccchhHHHHHHHHHHHHHH
Confidence 875 36899999999999999999 899999999999999999999999964321111 12488888776666665
Q ss_pred HHHHhhcCCCCCCc-EEEecCCCCCCCCCce--EEEecCCcccCCcccccccccCCCCC
Q 022032 223 ATRDIGKGIFPRSC-LLNVEIPTSPLTNKGF--KFTKQSMWRSTPNWQAVSANRYPAGH 278 (303)
Q Consensus 223 l~~~~~~~~lp~~~-~LNVN~P~~~~~~kGv--k~Tr~g~~~~~~~~~~~~~~r~p~g~ 278 (303)
+ .+..+|+++ +||||||.++. +|+ |+||||+++|.. .+..++||+|+
T Consensus 156 l----~~~~~p~~~~~LNVN~P~~~~--~gi~~~~tr~g~r~y~~---~~~~~~dp~g~ 205 (266)
T PRK13934 156 V----LKRGMPKGVDVISVNFPRRLR--RGVKAKLVKAAKLRFAQ---QVERRVDPRGR 205 (266)
T ss_pred H----HhcCCCCCCcEEEEecCCCCC--CCCceEEecCCccccCC---ceEEEECCCCC
Confidence 4 456799996 99999998764 888 999999998774 34445688873
No 10
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=91.17 E-value=1.2 Score=42.77 Aligned_cols=39 Identities=28% Similarity=0.227 Sum_probs=28.5
Q ss_pred CeEEEecCCCC-CCccHHHHHHHHHhcCCCcEEEEeeCCCC
Q 022032 67 PVLLVTNGDGI-ESPGLVYLVEALVREGLYNVHVCAPQSDK 106 (303)
Q Consensus 67 ~~ILlTNDDGi-~SpGI~aL~~aL~~~G~~dV~VVAP~~~q 106 (303)
||||++.=-+. +.--+.+|+++|++.| |+|+++++..-+
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rG-h~V~~~t~~~~~ 40 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAG-HEVRVATPPEFA 40 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCC-CeEEEeeCHhHH
Confidence 57887653322 2233678999999999 899999998643
No 11
>PLN02846 digalactosyldiacylglycerol synthase
Probab=90.51 E-value=1.6 Score=44.73 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=30.4
Q ss_pred CCCeEEEecCC------CCCCccHHHHHHHHHhcCCCcEEEEeeCCC
Q 022032 65 SKPVLLVTNGD------GIESPGLVYLVEALVREGLYNVHVCAPQSD 105 (303)
Q Consensus 65 ~~~~ILlTNDD------Gi~SpGI~aL~~aL~~~G~~dV~VVAP~~~ 105 (303)
.+|||+|.-|= |.. -.+..+++.|.+.|+|+|+||||...
T Consensus 3 ~~mrIaivTdt~lP~vnGva-~s~~~~a~~L~~~G~heV~vvaP~~~ 48 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTA-VNPLFRAAYLAKDGDREVTLVIPWLS 48 (462)
T ss_pred CCCEEEEEEcCCCCCCCCee-ccHHHHHHHHHhcCCcEEEEEecCCc
Confidence 46899988773 442 35566777999999669999999764
No 12
>PRK10307 putative glycosyl transferase; Provisional
Probab=89.06 E-value=7.8 Score=37.30 Aligned_cols=36 Identities=19% Similarity=0.043 Sum_probs=27.8
Q ss_pred CeEEEecCCCCCC-----ccHHHHHHHHHhcCCCcEEEEeeC
Q 022032 67 PVLLVTNGDGIES-----PGLVYLVEALVREGLYNVHVCAPQ 103 (303)
Q Consensus 67 ~~ILlTNDDGi~S-----pGI~aL~~aL~~~G~~dV~VVAP~ 103 (303)
||||+.++.-.-- .-+..|++.|.+.| |+|+|++|.
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G-~~V~vit~~ 41 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARG-HEVRVITAP 41 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCC-CeEEEEecC
Confidence 6788888753211 13789999999999 799999976
No 13
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=88.65 E-value=9.1 Score=37.97 Aligned_cols=41 Identities=12% Similarity=0.078 Sum_probs=30.0
Q ss_pred CCCCeEEEecC-CCCC-----CccHHHHHHHHHhcCCCcEEEEeeCCC
Q 022032 64 SSKPVLLVTNG-DGIE-----SPGLVYLVEALVREGLYNVHVCAPQSD 105 (303)
Q Consensus 64 ~~~~~ILlTND-DGi~-----SpGI~aL~~aL~~~G~~dV~VVAP~~~ 105 (303)
.++|||++.-+ ..+. ..-+..|.+.|.+.| |+|+|+.+...
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G-~eV~vlt~~~~ 102 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMG-DEVLVVTTDEG 102 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCC-CeEEEEecCCC
Confidence 67789997765 2221 124678889999999 79999998754
No 14
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=88.39 E-value=1.1 Score=44.01 Aligned_cols=105 Identities=17% Similarity=0.134 Sum_probs=62.1
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHHHH
Q 022032 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLAL 146 (303)
Q Consensus 67 ~~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~yaV~GTPaDCV~laL 146 (303)
|+|++.=..=-+..-.+.+.+.|.+.| |+|+|.+-+.++ ...+-+-..+..+.+ |. -.+|+.+=+...+
T Consensus 1 MkIwiDi~~p~hvhfFk~~I~eL~~~G-heV~it~R~~~~-----~~~LL~~yg~~y~~i-G~----~g~~~~~Kl~~~~ 69 (335)
T PF04007_consen 1 MKIWIDITHPAHVHFFKNIIRELEKRG-HEVLITARDKDE-----TEELLDLYGIDYIVI-GK----HGDSLYGKLLESI 69 (335)
T ss_pred CeEEEECCCchHHHHHHHHHHHHHhCC-CEEEEEEeccch-----HHHHHHHcCCCeEEE-cC----CCCCHHHHHHHHH
Confidence 566665444445556788999999999 799999987632 111211111111100 11 1144444333222
Q ss_pred h------ccccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEec
Q 022032 147 S------GALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISL 197 (303)
Q Consensus 147 ~------~~l~~~~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~ 197 (303)
. .+.. ..+||++||+-+ +.|++-|...|+|+|+|.=
T Consensus 70 ~R~~~l~~~~~-~~~pDv~is~~s--------------~~a~~va~~lgiP~I~f~D 111 (335)
T PF04007_consen 70 ERQYKLLKLIK-KFKPDVAISFGS--------------PEAARVAFGLGIPSIVFND 111 (335)
T ss_pred HHHHHHHHHHH-hhCCCEEEecCc--------------HHHHHHHHHhCCCeEEEec
Confidence 2 2222 258999998743 5889999999999999963
No 15
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=85.56 E-value=5.5 Score=37.47 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=29.1
Q ss_pred CeEEEe-cCCCCCCccHHHHHHHHHhcCCCcEEEEeeCC
Q 022032 67 PVLLVT-NGDGIESPGLVYLVEALVREGLYNVHVCAPQS 104 (303)
Q Consensus 67 ~~ILlT-NDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~ 104 (303)
||||++ +--|-+.--...|++.|++.| |+|+|+....
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g-~ev~vv~~~~ 39 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRG-WEVLYLGTAR 39 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCC-CEEEEEECCC
Confidence 677777 656755556668999999999 7999998854
No 16
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=84.11 E-value=1.7 Score=41.84 Aligned_cols=108 Identities=25% Similarity=0.290 Sum_probs=61.3
Q ss_pred ccHHHHHHHHHhcCCCcEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHHHHhccccCCCCCcEE
Q 022032 80 PGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLV 159 (303)
Q Consensus 80 pGI~aL~~aL~~~G~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~yaV~GTPaDCV~laL~~~l~~~~~PDLV 159 (303)
||--+|+++|++.| .+|++|..+...+.+...+...........+. .. +.+.|-+-...-....+. ..+||++
T Consensus 63 ~GA~aLa~aL~~lG-~~~~ivtd~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~-~~~~d~l 135 (291)
T PF14336_consen 63 PGAAALARALQALG-KEVVIVTDERCAPVVKAAVRAAGLQGVDKVEI--PP---FFPDDFAQAFLEADGLLK-EPRPDLL 135 (291)
T ss_pred HHHHHHHHHHHHcC-CeEEEEECHHHHHHHHHHHHHHhhCccccccc--cc---ccccchhhhHHHHhhccc-cCCCCEE
Confidence 69999999999999 69999999888877776544221110000000 00 222333333333333332 3579999
Q ss_pred Ee----cCC--------CCCCCccc-cccchhHHHHHHHHHcCCCeeEEec
Q 022032 160 IS----GIN--------RGSSCGHH-MFYSGVVAGAREALICGVPSLSISL 197 (303)
Q Consensus 160 VS----GIN--------~G~N~G~d-v~ySGTVgAA~EA~l~GIPAIAvS~ 197 (303)
|| |.| +|.|+... .-...-+-.|.+ .|||.|+|.=
T Consensus 136 IaIERpGra~dG~Y~nmrG~~I~~~~a~~D~lf~~a~~---~gi~tigIGD 183 (291)
T PF14336_consen 136 IAIERPGRAADGNYYNMRGEDISHLVAPLDDLFLAAKE---PGIPTIGIGD 183 (291)
T ss_pred EEeCCcccCCCCCEecCcCCcCccccccHHHHHHHhhc---CCCCEEEECC
Confidence 97 555 34444332 123333444444 7999999974
No 17
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=83.28 E-value=18 Score=32.50 Aligned_cols=28 Identities=36% Similarity=0.318 Sum_probs=23.4
Q ss_pred CccHHHHHHHHHhcCCCcEEEEeeCCCCc
Q 022032 79 SPGLVYLVEALVREGLYNVHVCAPQSDKS 107 (303)
Q Consensus 79 SpGI~aL~~aL~~~G~~dV~VVAP~~~qS 107 (303)
...+..|+++|.+.| |+|+|+.+.....
T Consensus 17 ~~~~~~l~~~L~~~g-~~v~~~~~~~~~~ 44 (364)
T cd03814 17 VRTLQRLVEHLRARG-HEVLVIAPGPFRE 44 (364)
T ss_pred ehHHHHHHHHHHHCC-CEEEEEeCCchhh
Confidence 357889999999999 7999999886543
No 18
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=80.98 E-value=6 Score=37.33 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=23.6
Q ss_pred CCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEecc
Q 022032 154 SKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLN 198 (303)
Q Consensus 154 ~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~ 198 (303)
.+||||||-... .+.+.|...|||+|.+.-.
T Consensus 92 ~~pDlVi~d~~~--------------~~~~aA~~~~iP~i~i~~q 122 (321)
T TIGR00661 92 YNPDLIISDFEY--------------STVVAAKLLKIPVICISNQ 122 (321)
T ss_pred cCCCEEEECCch--------------HHHHHHHhcCCCEEEEecc
Confidence 589999997433 2266778899999999854
No 19
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=80.77 E-value=2.9 Score=40.23 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCCCcEEEEeeCCCC
Q 022032 82 LVYLVEALVREGLYNVHVCAPQSDK 106 (303)
Q Consensus 82 I~aL~~aL~~~G~~dV~VVAP~~~q 106 (303)
+..|+++|++.| |+|+++.++..+
T Consensus 12 ~l~lA~~L~~~G-h~V~~~~~~~~~ 35 (392)
T TIGR01426 12 TLGVVEELVARG-HRVTYATTEEFA 35 (392)
T ss_pred cHHHHHHHHhCC-CeEEEEeCHHHH
Confidence 457999999999 799999997755
No 20
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=80.32 E-value=14 Score=34.16 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=24.6
Q ss_pred eEEEecCC-CCCCccHHHHHHHHHhcCCCcEEEEeeCC
Q 022032 68 VLLVTNGD-GIESPGLVYLVEALVREGLYNVHVCAPQS 104 (303)
Q Consensus 68 ~ILlTNDD-Gi~SpGI~aL~~aL~~~G~~dV~VVAP~~ 104 (303)
|||++.-. |=+--.+..|+++|.+.| |+|+|+++..
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G-~ev~v~~~~~ 37 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERG-AEVLFLGTKR 37 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCC-CEEEEEECCC
Confidence 35555422 223335668999999999 7999998854
No 21
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=74.95 E-value=5.7 Score=32.05 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=29.0
Q ss_pred EEEecCCCCCCcc----HHHHHHHHHhcCCCcEEEEeeCCCCccccc
Q 022032 69 LLVTNGDGIESPG----LVYLVEALVREGLYNVHVCAPQSDKSVSGH 111 (303)
Q Consensus 69 ILlTNDDGi~SpG----I~aL~~aL~~~G~~dV~VVAP~~~qSg~g~ 111 (303)
|||+|.-....-| +..|.++|.+.| |+|+|++|.....-...
T Consensus 1 ili~~~~~~~~GG~e~~~~~l~~~l~~~G-~~v~v~~~~~~~~~~~~ 46 (177)
T PF13439_consen 1 ILITNIFLPNIGGAERVVLNLARALAKRG-HEVTVVSPGVKDPIEEE 46 (177)
T ss_dssp -EEECC-TTSSSHHHHHHHHHHHHHHHTT--EEEEEESS-TTS-SST
T ss_pred CEEEEecCCCCChHHHHHHHHHHHHHHCC-CEEEEEEcCCCccchhh
Confidence 6788877776656 567889999999 79999998876554443
No 22
>PRK09864 putative peptidase; Provisional
Probab=74.92 E-value=10 Score=37.59 Aligned_cols=143 Identities=11% Similarity=0.050 Sum_probs=82.0
Q ss_pred cCCCCCCc------cHHHHHHHHHhcC--CCcEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHH
Q 022032 73 NGDGIESP------GLVYLVEALVREG--LYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSL 144 (303)
Q Consensus 73 NDDGi~Sp------GI~aL~~aL~~~G--~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~yaV~GTPaDCV~l 144 (303)
|.+=+-++ |..+|.++|+... .++|+.++-..|-=|...+.+....+. ..-+++|+.||++.+--
T Consensus 165 ~~~~i~~kalDnR~g~~~lle~l~~l~~~~~~vy~v~TvQEEvGlrGA~~aa~~i~-------PDiaIavDvt~~~d~p~ 237 (356)
T PRK09864 165 GEDKVVGKALDNRIGCAMMAELLQTVNNPEITLYGVGSVEEEVGLRGAQTSAEHIK-------PDVVIVLDTAVAGDVPG 237 (356)
T ss_pred cCCEEEEEeCccHHHHHHHHHHHHHhhcCCCeEEEEEEcchhcchHHHHHHHhcCC-------CCEEEEEecccCCCCCC
Confidence 44446454 6778888877653 268999998888777776665322221 13367888888643321
Q ss_pred HHhcc--ccCCCCCcEEEe--cCCCC-------------CCCcccc-cc--chhHHHHHHHHHcCCCeeEEecccCCCCC
Q 022032 145 ALSGA--LFSWSKPLLVIS--GINRG-------------SSCGHHM-FY--SGVVAGAREALICGVPSLSISLNWKKDES 204 (303)
Q Consensus 145 aL~~~--l~~~~~PDLVVS--GIN~G-------------~N~G~dv-~y--SGTVgAA~EA~l~GIPAIAvS~~~~~~~~ 204 (303)
.-... ..-++.|-|.+- |.+.- .|+-... .. -||=|+++.-...|||++.+|...+.-++
T Consensus 238 ~~~~~~~~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~~ggTDa~~i~~~~~Gvpt~~isiP~RY~Hs 317 (356)
T PRK09864 238 IDNIKYPLKLGQGPGLMLFDKRYFPNQKLVAALKSCAAHNDLPLQFSTMKTGATDGGRYNVMGGGRPVVALCLPTRYLHA 317 (356)
T ss_pred CcccccccccCCCCeEEEccCCccCCHHHHHHHHHHHHHcCCCceEEEcCCCCchHHHHHHhCCCCcEEEEeeccCcCCC
Confidence 10100 000234666332 33221 2333332 22 39999999988899999999998654332
Q ss_pred C-----CcChHHHHHHHHHHHHH
Q 022032 205 Q-----ESDFKDAVSVCLPLINA 222 (303)
Q Consensus 205 ~-----~~d~~~aa~~~~~li~~ 222 (303)
. ..|++.+.++...+++.
T Consensus 318 ~~e~~~~~D~e~~~~Ll~~~~~~ 340 (356)
T PRK09864 318 NSGMISKADYDALLTLIRDFLTT 340 (356)
T ss_pred cceEeEHHHHHHHHHHHHHHHHh
Confidence 1 24666666555444443
No 23
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=74.22 E-value=20 Score=28.73 Aligned_cols=102 Identities=20% Similarity=0.252 Sum_probs=56.6
Q ss_pred EEEecCCCCCCccHHHHHHHHHhcCCCcEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHH-HHHh
Q 022032 69 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVS-LALS 147 (303)
Q Consensus 69 ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~yaV~GTPaDCV~-laL~ 147 (303)
++|+|.+. +-+.-+++.|++.| ++|+|+++..+. .......-+.+.+.+.. ..+ |..-.. ..|.
T Consensus 3 l~i~~~~~---~~~~~~~~~L~~~g-~~V~ii~~~~~~----~~~~~~~~i~~~~~~~~------~k~-~~~~~~~~~l~ 67 (139)
T PF13477_consen 3 LLIGNTPS---TFIYNLAKELKKRG-YDVHIITPRNDY----EKYEIIEGIKVIRLPSP------RKS-PLNYIKYFRLR 67 (139)
T ss_pred EEEecCcH---HHHHHHHHHHHHCC-CEEEEEEcCCCc----hhhhHhCCeEEEEecCC------CCc-cHHHHHHHHHH
Confidence 57788774 45788999999998 799999995443 22222222333333211 112 333322 2444
Q ss_pred ccccCCCCCcEEEecCCCCCCCccccccc-hhHHHHHHHHHcC-CCeeEEec
Q 022032 148 GALFSWSKPLLVISGINRGSSCGHHMFYS-GVVAGAREALICG-VPSLSISL 197 (303)
Q Consensus 148 ~~l~~~~~PDLVVSGIN~G~N~G~dv~yS-GTVgAA~EA~l~G-IPAIAvS~ 197 (303)
.++. ..+||+|.+-- ..+ |.+| .+.+.+.| +|-|.-..
T Consensus 68 k~ik-~~~~DvIh~h~----------~~~~~~~~-~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 68 KIIK-KEKPDVIHCHT----------PSPYGLFA-MLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HHhc-cCCCCEEEEec----------CChHHHHH-HHHHHHcCCCCEEEEec
Confidence 4443 36899996421 112 3333 34456788 88884443
No 24
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=73.77 E-value=20 Score=33.12 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=24.2
Q ss_pred eEEE-ecCCCCCCccHHHHHHHHHhcCCCcEEEEeeC
Q 022032 68 VLLV-TNGDGIESPGLVYLVEALVREGLYNVHVCAPQ 103 (303)
Q Consensus 68 ~ILl-TNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~ 103 (303)
+|++ +=..|-+......|++.|.+.| |+|+|+++.
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g-~eV~vv~~~ 37 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRG-VEVLWLGTK 37 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCC-CEEEEEeCC
Confidence 3443 4444444444458999999999 799999864
No 25
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=68.47 E-value=33 Score=30.07 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=25.5
Q ss_pred EEEecCCCCCCcc----HHHHHHHHHhcCCCcEEEEeeCCCC
Q 022032 69 LLVTNGDGIESPG----LVYLVEALVREGLYNVHVCAPQSDK 106 (303)
Q Consensus 69 ILlTNDDGi~SpG----I~aL~~aL~~~G~~dV~VVAP~~~q 106 (303)
||+....-...-| +..|+++|.+.| |+|+|+.+....
T Consensus 2 I~i~~~~~~~~gG~~~~~~~l~~~L~~~g-~~v~v~~~~~~~ 42 (348)
T cd03820 2 ILFVIPSLGNAGGAERVLSNLANALAEKG-HEVTIISLDKGE 42 (348)
T ss_pred eEEEeccccCCCChHHHHHHHHHHHHhCC-CeEEEEecCCCC
Confidence 5555544332333 456888898888 799999998765
No 26
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=67.51 E-value=12 Score=36.63 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=30.5
Q ss_pred CCCCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEeeC
Q 022032 64 SSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQ 103 (303)
Q Consensus 64 ~~~~~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~ 103 (303)
.++..||.|+|=|.+. =+.-+++.|.+.| |+|+|+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~-R~~~~a~~L~~~G-~~V~ii~~~ 40 (415)
T cd03816 3 RKRVCVLVLGDIGRSP-RMQYHALSLAKHG-WKVDLVGYL 40 (415)
T ss_pred ccEEEEEEecccCCCH-HHHHHHHHHHhcC-ceEEEEEec
Confidence 4567799999866654 5567999999999 799999874
No 27
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=67.16 E-value=11 Score=33.98 Aligned_cols=39 Identities=21% Similarity=0.150 Sum_probs=29.7
Q ss_pred CeEEEecCCCCC----Cc-----cHHHHHHHHHhcCCCcEEEEeeCCCC
Q 022032 67 PVLLVTNGDGIE----SP-----GLVYLVEALVREGLYNVHVCAPQSDK 106 (303)
Q Consensus 67 ~~ILlTNDDGi~----Sp-----GI~aL~~aL~~~G~~dV~VVAP~~~q 106 (303)
|+||+..+.-+- .- -+..|.++|.+.| |+|+|+.|....
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g-~~V~v~~~~~~~ 48 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARG-HEVTLFASGDSK 48 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcC-ceEEEEecCCCC
Confidence 678888775321 22 2789999999998 799999987754
No 28
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=65.31 E-value=23 Score=35.00 Aligned_cols=133 Identities=19% Similarity=0.153 Sum_probs=75.1
Q ss_pred cHHHHHHHHHhcC----CCcEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHHHHhccccCCCCC
Q 022032 81 GLVYLVEALVREG----LYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKP 156 (303)
Q Consensus 81 GI~aL~~aL~~~G----~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~yaV~GTPaDCV~laL~~~l~~~~~P 156 (303)
|..+|.++|+... .++|+.++...|.=|...+.+...-+ ....+++++.||+....---..-| ++.|
T Consensus 182 g~a~l~e~l~~l~~~~~~~~l~~~~tvqEEvG~rGA~~aa~~i-------~pD~aI~vDv~~~~d~~~~~~~~l--g~Gp 252 (350)
T TIGR03107 182 GVLMILELLESLKDQELPNTLIAGANVQEEVGLRGAHVSTTKF-------NPDIFFAVDCSPAGDIYGDQGGKL--GEGT 252 (350)
T ss_pred HHHHHHHHHHHhhhcCCCceEEEEEEChhhcCchhhhhHHhhC-------CCCEEEEEecCCcCCCCCCCcccc--CCCc
Confidence 6677777776653 25889988888877776665532221 123467788887542110000011 2346
Q ss_pred cEEEe--cCCCC-------------CCCccccccc--hhHHHHHHHHHcCCCeeEEecccCCCCC-----CCcChHHHHH
Q 022032 157 LLVIS--GINRG-------------SSCGHHMFYS--GVVAGAREALICGVPSLSISLNWKKDES-----QESDFKDAVS 214 (303)
Q Consensus 157 DLVVS--GIN~G-------------~N~G~dv~yS--GTVgAA~EA~l~GIPAIAvS~~~~~~~~-----~~~d~~~aa~ 214 (303)
-|.+. |...- .|+-.....+ ||=|+|..=...|||++.+|...+.-+. ...|++.+++
T Consensus 253 ~i~~~D~~~i~~~~l~~~l~~~A~~~~I~~Q~~~~~gGtDa~~~~~~~~Gvpt~~i~ip~Ry~Hs~~e~i~~~D~~~~~~ 332 (350)
T TIGR03107 253 LLRFFDPGHIMLPRMKDFLLTTAEEAGIKYQYYVAKGGTDAGAAHLKNSGVPSTTIGVCARYIHSHQTLYSIDDFLAAQA 332 (350)
T ss_pred eEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEecCCCCchHHHHHHhCCCCcEEEEccCcccccChhheeeHHHHHHHHH
Confidence 66332 32221 1222233333 8888888777899999999998654332 1246777766
Q ss_pred HHHHHHHH
Q 022032 215 VCLPLINA 222 (303)
Q Consensus 215 ~~~~li~~ 222 (303)
+...+++.
T Consensus 333 Ll~~~i~~ 340 (350)
T TIGR03107 333 FLQAIVKK 340 (350)
T ss_pred HHHHHHHh
Confidence 65555443
No 29
>PRK00654 glgA glycogen synthase; Provisional
Probab=65.31 E-value=28 Score=34.70 Aligned_cols=24 Identities=29% Similarity=0.247 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCCCcEEEEeeCCCC
Q 022032 82 LVYLVEALVREGLYNVHVCAPQSDK 106 (303)
Q Consensus 82 I~aL~~aL~~~G~~dV~VVAP~~~q 106 (303)
+..|.++|.+.| |+|.|+.|...+
T Consensus 23 v~~L~~~L~~~G-~~V~v~~p~y~~ 46 (466)
T PRK00654 23 VGALPKALAALG-HDVRVLLPGYPA 46 (466)
T ss_pred HHHHHHHHHHCC-CcEEEEecCCcc
Confidence 589999999999 799999998643
No 30
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=61.41 E-value=8.1 Score=37.95 Aligned_cols=26 Identities=46% Similarity=0.678 Sum_probs=21.0
Q ss_pred CcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEe
Q 022032 156 PLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSIS 196 (303)
Q Consensus 156 PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS 196 (303)
-||+|+| +||+. +||+++|+|+|.+.
T Consensus 249 a~l~Ig~-------------ggTMa--~EAA~LGtPaIs~~ 274 (335)
T PF04007_consen 249 ADLVIGG-------------GGTMA--REAALLGTPAISCF 274 (335)
T ss_pred cCEEEeC-------------CcHHH--HHHHHhCCCEEEec
Confidence 4788876 78885 59999999999753
No 31
>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]
Probab=58.41 E-value=17 Score=32.00 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=26.5
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCC
Q 022032 67 PVLLVTNGDGIESPGLVYLVEALVREGLY 95 (303)
Q Consensus 67 ~~ILlTNDDGi~SpGI~aL~~aL~~~G~~ 95 (303)
..|.||-|||+...+...+.+.|++.+..
T Consensus 65 k~v~lTFDDg~~~~~~~~il~iL~k~~i~ 93 (267)
T COG0726 65 KAVALTFDDGPLDGNTPRILPLLKKYGIK 93 (267)
T ss_pred CeEEEEeecCCCCCCcHHHHHHHHHcCCc
Confidence 56999999999998999999999999864
No 32
>PRK15405 ethanolamine utilization protein EutL; Provisional
Probab=57.29 E-value=61 Score=30.44 Aligned_cols=101 Identities=21% Similarity=0.199 Sum_probs=68.4
Q ss_pred ccHHHHHHHHHhcCCCcEEEEeeCCCCcccccccCCCCc----------------------------eEEEEe------e
Q 022032 80 PGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRET----------------------------IAVSSA------E 125 (303)
Q Consensus 80 pGI~aL~~aL~~~G~~dV~VVAP~~~qSg~g~siT~~~p----------------------------l~v~~v------~ 125 (303)
++|.++=+++++. +|-|+-+.+-+-|.||+-|--.- +..... +
T Consensus 46 ~~i~AaDeA~KAA---nVevv~a~~~~gGaghg~~~~~G~viiIi~G~dvsdVrsAveaa~~~i~~~~~f~~~n~~g~~~ 122 (217)
T PRK15405 46 VTYTALDEATKQA---MVEVVYARSFYAGAAHASTPLAGEVIGILAGPNPAEVRAGLDAMVAFIENGAAFQSANDDDSTA 122 (217)
T ss_pred hHHhHHHHHHhhc---ceEEEEEEeeccccccCCCCCCccEEEEEeCCCHHHHHHHHHHHHHHHHhhhceEeeCCCCCEE
Confidence 8999998888874 79999999999999998742100 000000 0
Q ss_pred e-------------------CCceeE-EecCChHHHHHHHHhccccCCCCCcEE-EecCCCCCCCccccccchhHHHHHH
Q 022032 126 I-------------------NGATAY-EVSGTPVDCVSLALSGALFSWSKPLLV-ISGINRGSSCGHHMFYSGVVAGARE 184 (303)
Q Consensus 126 ~-------------------~g~~~y-aV~GTPaDCV~laL~~~l~~~~~PDLV-VSGIN~G~N~G~dv~ySGTVgAA~E 184 (303)
+ .| +.| ++=|.|+- -.++++..++. -..++| ..|+..|.|.|. .+.||+-+|.+.
T Consensus 123 ~~a~~~aRag~~l~k~~g~~~G-~a~~~li~~P~~-~~~~~D~AlKa-A~V~~~~~~~P~~~t~f~~-~~ltG~~~A~r~ 198 (217)
T PRK15405 123 FFAHVVSRTGSYLSKTAGIAEG-EPLAYLIAPPLE-AMYGIDAALKA-ADVQLVTFVGPPSETNFGG-ALLTGSQSACKA 198 (217)
T ss_pred EEEEEcccHHHHHHHHcCCCCC-ceeEEEecCcHH-HHHHHHHHHhh-cCceEEEEeCCCCCceecC-eeEEeCHHHHHH
Confidence 0 12 122 23477844 45667766643 467885 899999998888 888999999988
Q ss_pred HHH
Q 022032 185 ALI 187 (303)
Q Consensus 185 A~l 187 (303)
|+.
T Consensus 199 A~~ 201 (217)
T PRK15405 199 ACN 201 (217)
T ss_pred HHH
Confidence 873
No 33
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=56.01 E-value=13 Score=29.44 Aligned_cols=98 Identities=19% Similarity=0.176 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCCcEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHHHHhccc-cCCCCCcEEE
Q 022032 82 LVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGAL-FSWSKPLLVI 160 (303)
Q Consensus 82 I~aL~~aL~~~G~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~yaV~GTPaDCV~laL~~~l-~~~~~PDLVV 160 (303)
+..|+++|.+.| |+|.|++|........ .....+++..+...... + .-+ ... ....+..++ ....+||+|.
T Consensus 7 ~~~l~~~L~~~G-~~V~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~-~~~-~~~-~~~~~~~~l~~~~~~~Dvv~ 78 (160)
T PF13579_consen 7 VRELARALAARG-HEVTVVTPQPDPEDDE---EEEDGVRVHRLPLPRRP-W-PLR-LLR-FLRRLRRLLAARRERPDVVH 78 (160)
T ss_dssp HHHHHHHHHHTT--EEEEEEE---GGG-S---EEETTEEEEEE--S-SS-S-GGG-HCC-HHHHHHHHCHHCT---SEEE
T ss_pred HHHHHHHHHHCC-CEEEEEecCCCCcccc---cccCCceEEeccCCccc-h-hhh-hHH-HHHHHHHHHhhhccCCeEEE
Confidence 678999999999 7999999877665211 11223444443321111 0 000 011 123444443 0236899998
Q ss_pred ecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEecc
Q 022032 161 SGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLN 198 (303)
Q Consensus 161 SGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~ 198 (303)
.-- .+++.++. ......|+|-|.--.+
T Consensus 79 ~~~----------~~~~~~~~-~~~~~~~~p~v~~~h~ 105 (160)
T PF13579_consen 79 AHS----------PTAGLVAA-LARRRRGIPLVVTVHG 105 (160)
T ss_dssp EEH----------HHHHHHHH-HHHHHHT--EEEE-SS
T ss_pred ecc----------cchhHHHH-HHHHccCCcEEEEECC
Confidence 421 22443442 2234779999877654
No 34
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=55.45 E-value=85 Score=30.44 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=23.2
Q ss_pred CCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEecc
Q 022032 154 SKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLN 198 (303)
Q Consensus 154 ~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~ 198 (303)
.+||+||+ +|. ++|. -+++.|.++|+|.+-.-.+
T Consensus 90 ~kPdvvi~---~Gg------y~s~--p~~~aa~~~~~p~~i~e~n 123 (352)
T PRK12446 90 LKPDVIFS---KGG------FVSV--PVVIGGWLNRVPVLLHESD 123 (352)
T ss_pred cCCCEEEe---cCc------hhhH--HHHHHHHHcCCCEEEECCC
Confidence 68999998 322 2222 2567899999999865544
No 35
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=55.01 E-value=11 Score=30.45 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCCcEEEEeeCCCCc
Q 022032 82 LVYLVEALVREGLYNVHVCAPQSDKS 107 (303)
Q Consensus 82 I~aL~~aL~~~G~~dV~VVAP~~~qS 107 (303)
.-+|.++|++.| |+|.++++..-+.
T Consensus 15 ~lala~~L~~rG-h~V~~~~~~~~~~ 39 (139)
T PF03033_consen 15 FLALARALRRRG-HEVRLATPPDFRE 39 (139)
T ss_dssp HHHHHHHHHHTT--EEEEEETGGGHH
T ss_pred HHHHHHHHhccC-CeEEEeeccccee
Confidence 358999999999 8999998876443
No 36
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=54.23 E-value=79 Score=29.11 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=26.6
Q ss_pred EEEecCCCCCCccHHHHHHHHHhcCCCcEEEEeeCC
Q 022032 69 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQS 104 (303)
Q Consensus 69 ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~ 104 (303)
|+.+++-|=...-+..|++.|.+.| |+|+|+....
T Consensus 5 ~~~~p~~gG~~~~~~~la~~L~~~G-~~v~v~~~~~ 39 (371)
T cd04962 5 IVCYPTYGGSGVVATELGKALARRG-HEVHFITSSR 39 (371)
T ss_pred EEEEeCCCCccchHHHHHHHHHhcC-CceEEEecCC
Confidence 4444455555567899999999999 7999998754
No 37
>PRK06849 hypothetical protein; Provisional
Probab=53.78 E-value=20 Score=34.93 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=28.4
Q ss_pred CCCCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEeeCC
Q 022032 64 SSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQS 104 (303)
Q Consensus 64 ~~~~~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~ 104 (303)
+.+++|||| |-..+.-..++++|.+.| ++|+++....
T Consensus 2 ~~~~~VLI~---G~~~~~~l~iar~l~~~G-~~Vi~~d~~~ 38 (389)
T PRK06849 2 NTKKTVLIT---GARAPAALELARLFHNAG-HTVILADSLK 38 (389)
T ss_pred CCCCEEEEe---CCCcHHHHHHHHHHHHCC-CEEEEEeCCc
Confidence 346889999 566655566889999999 7999996553
No 38
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=53.01 E-value=16 Score=33.31 Aligned_cols=38 Identities=18% Similarity=0.150 Sum_probs=28.0
Q ss_pred CeEEEecCCCC-C--CccHHHHHHHHHhcCCCcEEEEeeCCC
Q 022032 67 PVLLVTNGDGI-E--SPGLVYLVEALVREGLYNVHVCAPQSD 105 (303)
Q Consensus 67 ~~ILlTNDDGi-~--SpGI~aL~~aL~~~G~~dV~VVAP~~~ 105 (303)
|+||+.|+... . ..-...|.++|.+.| |+|+|+.+...
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G-~~v~v~~~~~~ 41 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAG-VDSTMLVQEKK 41 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcC-CceeEEEeecc
Confidence 67777776522 2 234678899999999 79999998765
No 39
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=52.64 E-value=18 Score=34.00 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=26.3
Q ss_pred CeEEEec-CCCCC--CccHHHHHHHHHhcCCCcEEEEeeCC
Q 022032 67 PVLLVTN-GDGIE--SPGLVYLVEALVREGLYNVHVCAPQS 104 (303)
Q Consensus 67 ~~ILlTN-DDGi~--SpGI~aL~~aL~~~G~~dV~VVAP~~ 104 (303)
|+||+.. +.++. ..-+..|+++|.+.| |+|+|+++..
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G-~~V~v~~~~~ 40 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRG-HEVTIYTSHH 40 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCC-CeEEEEcCCC
Confidence 4566554 44432 234688999999999 7999999754
No 40
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=49.59 E-value=39 Score=33.19 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCCcEEEEeeCCCC
Q 022032 82 LVYLVEALVREGLYNVHVCAPQSDK 106 (303)
Q Consensus 82 I~aL~~aL~~~G~~dV~VVAP~~~q 106 (303)
+..|.++|.+.| |+|.|+.|...+
T Consensus 22 ~~~L~~aL~~~G-~~V~Vi~p~y~~ 45 (476)
T cd03791 22 VGALPKALAKLG-HDVRVIMPKYGR 45 (476)
T ss_pred HHHHHHHHHHCC-CeEEEEecCCcc
Confidence 578999999999 799999997664
No 41
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=49.17 E-value=19 Score=32.74 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=24.5
Q ss_pred CCCCCCccHHHHHHHHHhcCCCcEEEEeeCCCC
Q 022032 74 GDGIESPGLVYLVEALVREGLYNVHVCAPQSDK 106 (303)
Q Consensus 74 DDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~~q 106 (303)
++|++-.=+..-++.|.+.| ++|.++.|....
T Consensus 17 ~~G~~~~E~~~p~~~l~~aG-~~V~~as~~g~~ 48 (221)
T cd03141 17 PTGLWLEELAHPYDVFTEAG-YEVDFASPKGGK 48 (221)
T ss_pred cCccCHHHHHHHHHHHHHCC-CeEEEECCCCCC
Confidence 45555555667789999999 799999997654
No 42
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=48.84 E-value=1.4e+02 Score=27.69 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=21.6
Q ss_pred CccHHHHHHHHHhcCCCcEEEEeeCCC
Q 022032 79 SPGLVYLVEALVREGLYNVHVCAPQSD 105 (303)
Q Consensus 79 SpGI~aL~~aL~~~G~~dV~VVAP~~~ 105 (303)
.--+..|+++|.+.| |+|.|+++...
T Consensus 24 ~~~~~~l~~~L~~~g-~~V~v~~~~~~ 49 (398)
T cd03800 24 NVYVLELARALARLG-HEVDIFTRRID 49 (398)
T ss_pred eehHHHHHHHHhccC-ceEEEEEecCC
Confidence 346889999999999 79999997654
No 43
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=46.77 E-value=1.1e+02 Score=30.79 Aligned_cols=72 Identities=21% Similarity=0.239 Sum_probs=45.6
Q ss_pred CCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEecccCCCC---------------CCCcChHHHHHHHHH
Q 022032 154 SKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDE---------------SQESDFKDAVSVCLP 218 (303)
Q Consensus 154 ~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~~~~~~---------------~~~~d~~~aa~~~~~ 218 (303)
+.-||||.|= |.=-.....=...++-|+.|..+|+|.|+|+-....+. ....+++++.+.+.+
T Consensus 282 ~~ADlVITGE--G~~D~Qtl~GK~p~~Va~~A~~~~vPviai~G~v~~~~~~~~~~g~~a~~~i~~~~~~l~~a~~~~~~ 359 (375)
T TIGR00045 282 KDADLVITGE--GRLDRQSLMGKAPVGVAKRAKKYGVPVIAIAGSLGDGVDVLPQHGIDAAFSILPSPMPLEDALQNAST 359 (375)
T ss_pred cCCCEEEECC--CcccccccCCchHHHHHHHHHHhCCeEEEEecccCCChHHHHhcCccEEEEcCCCCCCHHHHHHHHHH
Confidence 4689999983 33222233446678999999999999999986532110 123356666555556
Q ss_pred HHHHHHHHh
Q 022032 219 LINAATRDI 227 (303)
Q Consensus 219 li~~l~~~~ 227 (303)
++++..+++
T Consensus 360 ~l~~~~~~~ 368 (375)
T TIGR00045 360 NLERTAENI 368 (375)
T ss_pred HHHHHHHHH
Confidence 666555544
No 44
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=46.32 E-value=1e+02 Score=27.08 Aligned_cols=79 Identities=13% Similarity=0.028 Sum_probs=47.3
Q ss_pred CCCCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHH
Q 022032 64 SSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVS 143 (303)
Q Consensus 64 ~~~~~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~yaV~GTPaDCV~ 143 (303)
.+..+||||--.|. -| +.+++.|.+.| ++|+++.... + .... .....|.+|=+-.+++.
T Consensus 6 ~~~k~vlItGas~~--iG-~~la~~l~~~G-~~v~~~~~~~--------~------~~~~---~~~~~~~~D~~~~~~~~ 64 (252)
T PRK08220 6 FSGKTVWVTGAAQG--IG-YAVALAFVEAG-AKVIGFDQAF--------L------TQED---YPFATFVLDVSDAAAVA 64 (252)
T ss_pred CCCCEEEEeCCCch--HH-HHHHHHHHHCC-CEEEEEecch--------h------hhcC---CceEEEEecCCCHHHHH
Confidence 34467999954431 12 45778888888 6888886543 0 0000 11234667767667777
Q ss_pred HHHhccccCCCCCcEEEecC
Q 022032 144 LALSGALFSWSKPLLVISGI 163 (303)
Q Consensus 144 laL~~~l~~~~~PDLVVSGI 163 (303)
-.+..+...+.++|+||.-.
T Consensus 65 ~~~~~~~~~~~~id~vi~~a 84 (252)
T PRK08220 65 QVCQRLLAETGPLDVLVNAA 84 (252)
T ss_pred HHHHHHHHHcCCCCEEEECC
Confidence 77765443345789998743
No 45
>PF00381 PTS-HPr: PTS HPr component phosphorylation site; InterPro: IPR005698 The histidine-containing phosphocarrier protein (HPr) is a central component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), which transfers metabolic carbohydrates across the cell membrane in many bacterial species [, ]. PTS catalyses the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is as follows: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to Enzyme I (EI) of the PTS, which in turn transfers it to the phosphoryl carrier protein (HPr) [, ]. Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease complex (enzymes EII/EIII). HPr [, ] is a small cytoplasmic protein of 70 to 90 amino acid residues. In some bacteria, HPr is a domain in a larger protein that includes a EIII(Fru) (IIA) domain and in some cases also the EI domain. A conserved histidine in the N-terminal section of HPr serves as an acceptor for the phosphoryl group of EI. In the central part of HPr, there is a conserved serine which (in Gram-positive bacteria only) is phosphorylated by an ATP-dependent protein kinase; a process which probably play a regulatory role in sugar transport. The overall architecture of the HPr domain has been described as an open faced beta-sandwich in which a beta-sheet is packed against three alpha-helices. Regulatory phosphorylation at the conserved Ser residue does not appear to induce large structural changes to the HPr domain, in particular in the region of the active site [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TXE_A 1QR5_A 1RZR_S 2NZU_L 2OEN_L 2NZV_L 1Y51_B 1Y4Y_A 1Y50_A 2HPR_A ....
Probab=44.77 E-value=20 Score=27.60 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=29.3
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEE
Q 022032 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVC 100 (303)
Q Consensus 67 ~~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VV 100 (303)
-.+.|+|+.|+|+.-...|++..++.. .+|+|.
T Consensus 4 ~~~~i~~~~GlHaRpa~~lv~~a~~~~-~~i~i~ 36 (84)
T PF00381_consen 4 REVTIKNPNGLHARPAAELVQIASKFD-SDITIR 36 (84)
T ss_dssp EEEEEESTTSSSHHHHHHHHHHHHTSS-SEEEEE
T ss_pred EEEEEcCCCcccHHHHHHHHHHHhhCC-CEEEEE
Confidence 358999999999999999999999987 688887
No 46
>PRK07856 short chain dehydrogenase; Provisional
Probab=44.64 E-value=1e+02 Score=27.39 Aligned_cols=37 Identities=30% Similarity=0.516 Sum_probs=26.2
Q ss_pred CCCCeEEEecCCCCCCccH-HHHHHHHHhcCCCcEEEEeeCCC
Q 022032 64 SSKPVLLVTNGDGIESPGL-VYLVEALVREGLYNVHVCAPQSD 105 (303)
Q Consensus 64 ~~~~~ILlTNDDGi~SpGI-~aL~~aL~~~G~~dV~VVAP~~~ 105 (303)
.+..+||||=- +-|| +++++.|.+.| ++|+++....+
T Consensus 4 ~~~k~~lItGa----s~gIG~~la~~l~~~g-~~v~~~~r~~~ 41 (252)
T PRK07856 4 LTGRVVLVTGG----TRGIGAGIARAFLAAG-ATVVVCGRRAP 41 (252)
T ss_pred CCCCEEEEeCC----CchHHHHHHHHHHHCC-CEEEEEeCChh
Confidence 34567899843 3455 67889999888 68988876543
No 47
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.67 E-value=70 Score=32.08 Aligned_cols=111 Identities=21% Similarity=0.278 Sum_probs=75.0
Q ss_pred EEEecCCCCCCccHHHHHHHHHhc-CCCcEEEEeeCCCCcccccc-cCCCCceEEEEeeeCCceeEEecCC---hHHHHH
Q 022032 69 LLVTNGDGIESPGLVYLVEALVRE-GLYNVHVCAPQSDKSVSGHS-VTLRETIAVSSAEINGATAYEVSGT---PVDCVS 143 (303)
Q Consensus 69 ILlTNDDGi~SpGI~aL~~aL~~~-G~~dV~VVAP~~~qSg~g~s-iT~~~pl~v~~v~~~g~~~yaV~GT---PaDCV~ 143 (303)
-||||-=|+.+.+ +..++.|.+. |..=+.+.+|+..--|...+ .++..-+ . ...|.++|+.-|. |..-..
T Consensus 2 gLvtN~tgv~~~~-~~~~d~L~~~~~v~l~alF~PEHG~~G~~~ag~~v~~~~--D--~~tglpVySLYG~~~~Pt~~mL 76 (365)
T PF07075_consen 2 GLVTNQTGVDSDG-RHTIDVLAAAPGVNLVALFGPEHGFRGDAQAGEKVEDYI--D--PRTGLPVYSLYGKTRKPTPEML 76 (365)
T ss_pred EEEecccccCCCC-cCHHHHHhhCCCCCEEEEecCCCCCccchhcCCcCCCCc--C--CCCCCeEEECCCCCCCCCHHHH
Confidence 4899999999766 5566888877 54456788999887777654 1211110 0 1146677777766 776655
Q ss_pred HHHhccccCCCCCcEEEecCCCCCCCccc-cccchhHHHHHHHHH-cCCCeeEEec
Q 022032 144 LALSGALFSWSKPLLVISGINRGSSCGHH-MFYSGVVAGAREALI-CGVPSLSISL 197 (303)
Q Consensus 144 laL~~~l~~~~~PDLVVSGIN~G~N~G~d-v~ySGTVgAA~EA~l-~GIPAIAvS~ 197 (303)
-+++.++ -=| ..+|.- .+|=.|++=+|||+. .|+|-|-+=-
T Consensus 77 ~~vDvlv----------fDi---QDvG~R~YTYi~Tl~~~MeAaa~~g~~vvVLDR 119 (365)
T PF07075_consen 77 KGVDVLV----------FDI---QDVGVRFYTYISTLYYVMEAAAENGKPVVVLDR 119 (365)
T ss_pred hCCCEEE----------EeC---ccCCchHHHHHHHHHHHHHHHHHhCCeEEEEeC
Confidence 5555443 333 456764 679999999999886 8999887754
No 48
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=42.96 E-value=39 Score=27.92 Aligned_cols=30 Identities=33% Similarity=0.390 Sum_probs=24.2
Q ss_pred eEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEeeC
Q 022032 68 VLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQ 103 (303)
Q Consensus 68 ~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~ 103 (303)
-||+|.|- .+..+.+.|++.| .+|+|+++.
T Consensus 103 ivLvSgD~-----Df~~~i~~lr~~G-~~V~v~~~~ 132 (149)
T cd06167 103 IVLVSGDS-----DFVPLVERLRELG-KRVIVVGFE 132 (149)
T ss_pred EEEEECCc-----cHHHHHHHHHHcC-CEEEEEccC
Confidence 48889865 5566778888889 699999998
No 49
>PLN02939 transferase, transferring glycosyl groups
Probab=42.10 E-value=1e+02 Score=34.93 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=28.5
Q ss_pred CCCCeEEEecCCC-C--CCcc----HHHHHHHHHhcCCCcEEEEeeCCC
Q 022032 64 SSKPVLLVTNGDG-I--ESPG----LVYLVEALVREGLYNVHVCAPQSD 105 (303)
Q Consensus 64 ~~~~~ILlTNDDG-i--~SpG----I~aL~~aL~~~G~~dV~VVAP~~~ 105 (303)
..+|+||-.-=-= . ..=| +.+|-++|.+.| |+|.|+.|.-.
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~G-hdV~VIlP~Y~ 526 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKG-HLVEIVLPKYD 526 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcC-CeEEEEeCCCc
Confidence 5668888653221 1 1113 578999999999 79999999664
No 50
>PLN02316 synthase/transferase
Probab=41.23 E-value=1.2e+02 Score=34.63 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCCcEEEEeeCCCC
Q 022032 82 LVYLVEALVREGLYNVHVCAPQSDK 106 (303)
Q Consensus 82 I~aL~~aL~~~G~~dV~VVAP~~~q 106 (303)
+.+|.++|.+.| |+|.|+.|....
T Consensus 610 V~sLp~ALa~~G-h~V~VitP~Y~~ 633 (1036)
T PLN02316 610 VTSLSRAVQDLN-HNVDIILPKYDC 633 (1036)
T ss_pred HHHHHHHHHHcC-CEEEEEecCCcc
Confidence 589999999999 799999998763
No 51
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=40.91 E-value=34 Score=31.42 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=29.6
Q ss_pred CeEEEec---CCCCCCccHHHHHHHHHhcCCCcEEEEeeCCC
Q 022032 67 PVLLVTN---GDGIESPGLVYLVEALVREGLYNVHVCAPQSD 105 (303)
Q Consensus 67 ~~ILlTN---DDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~~ 105 (303)
.-||+|+ =||++-.=+..-+++|++.| ++|.+++|...
T Consensus 4 Vlills~~~~~dG~e~~E~~~P~~~L~~aG-~~V~~aSp~~~ 44 (217)
T PRK11780 4 IAVILSGCGVYDGSEIHEAVLTLLALDRAG-AEAVCFAPDIP 44 (217)
T ss_pred EEEEEccCCCCCCEehhHHHHHHHHHHHCC-CEEEEEeCCCC
Confidence 3466663 14887777888899999999 79999999764
No 52
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.76 E-value=20 Score=35.66 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=18.4
Q ss_pred cchhHHHHHHHHHcCCCeeEEecc
Q 022032 175 YSGVVAGAREALICGVPSLSISLN 198 (303)
Q Consensus 175 ySGTVgAA~EA~l~GIPAIAvS~~ 198 (303)
-+||+ |+||++.|+|+|.+.-+
T Consensus 259 ~ggTM--arEaAlLGtpaIs~~pG 280 (346)
T COG1817 259 AGGTM--AREAALLGTPAISCYPG 280 (346)
T ss_pred CCchH--HHHHHHhCCceEEecCC
Confidence 37887 67999999999988744
No 53
>PRK10342 glycerate kinase I; Provisional
Probab=39.07 E-value=1.8e+02 Score=29.49 Aligned_cols=43 Identities=21% Similarity=0.150 Sum_probs=31.8
Q ss_pred CCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEecc
Q 022032 154 SKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLN 198 (303)
Q Consensus 154 ~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~ 198 (303)
..-||||.| .|.=-.....=-..++-|+.|..+|||.|+|.-.
T Consensus 283 ~~ADLVITG--EG~~D~QTl~GK~p~gVa~~A~~~~vPviai~G~ 325 (381)
T PRK10342 283 HDCTLVITG--EGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGS 325 (381)
T ss_pred ccCCEEEEC--CCcCcccccCCccHHHHHHHHHHhCCCEEEEecc
Confidence 468999998 3332233344456789999999999999999765
No 54
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=37.64 E-value=49 Score=29.52 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=23.1
Q ss_pred CCccHHHHHHHHHhcCCCcEEEEeeCCCC
Q 022032 78 ESPGLVYLVEALVREGLYNVHVCAPQSDK 106 (303)
Q Consensus 78 ~SpGI~aL~~aL~~~G~~dV~VVAP~~~q 106 (303)
.+.-++.|+++|.+.| |+|+|+.|....
T Consensus 16 ~~~~~~~l~~~L~~~g-~~v~v~~~~~~~ 43 (374)
T cd03817 16 VATSIRRLAEELEKRG-HEVYVVAPSYPG 43 (374)
T ss_pred eehHHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 4556889999999999 799999987643
No 55
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=37.31 E-value=2.9e+02 Score=24.28 Aligned_cols=29 Identities=28% Similarity=0.172 Sum_probs=23.2
Q ss_pred ccHHHHHHHHHhcCCCcEEEEeeCCCCccc
Q 022032 80 PGLVYLVEALVREGLYNVHVCAPQSDKSVS 109 (303)
Q Consensus 80 pGI~aL~~aL~~~G~~dV~VVAP~~~qSg~ 109 (303)
.-+..+++.|.+.| |+|+|+.+.......
T Consensus 18 ~~~~~~~~~l~~~g-~~v~v~~~~~~~~~~ 46 (377)
T cd03798 18 IFVKELARALAKRG-VEVTVLAPGPWGPKL 46 (377)
T ss_pred HHHHHHHHHHHHCC-CceEEEecCCCCCCc
Confidence 35788999999998 799999987765443
No 56
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=36.64 E-value=99 Score=25.40 Aligned_cols=35 Identities=40% Similarity=0.555 Sum_probs=29.7
Q ss_pred EEEecCCCCCCccHHHHHHHHHhcCCCcEEEEeeCCCC
Q 022032 69 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDK 106 (303)
Q Consensus 69 ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~~q 106 (303)
||+. ||+....+..+++.|+..| ++|.++.|..+.
T Consensus 6 ill~--~g~~~~e~~~~~~~~~~a~-~~v~vvs~~~~~ 40 (142)
T cd03132 6 ILVA--DGVDAAELSALKAALKAAG-ANVKVVAPTLGG 40 (142)
T ss_pred EEEc--CCcCHHHHHHHHHHHHHCC-CEEEEEecCcCc
Confidence 5665 5788889999999999998 699999998754
No 57
>PRK12342 hypothetical protein; Provisional
Probab=36.22 E-value=77 Score=30.07 Aligned_cols=55 Identities=16% Similarity=0.056 Sum_probs=35.5
Q ss_pred CChHHHHHHHHhccccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEecc
Q 022032 136 GTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLN 198 (303)
Q Consensus 136 GTPaDCV~laL~~~l~~~~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~ 198 (303)
|.-.-++..+|...+.. ..||||+.|- ...-.++|-||+.. |.+.|+|.|..-..
T Consensus 91 g~D~~ata~~La~~i~~-~~~DLVl~G~------~s~D~~tgqvg~~l-A~~Lg~P~vt~v~~ 145 (254)
T PRK12342 91 HALPLDTAKALAAAIEK-IGFDLLLFGE------GSGDLYAQQVGLLL-GELLQLPVINAVSK 145 (254)
T ss_pred CCCHHHHHHHHHHHHHH-hCCCEEEEcC------CcccCCCCCHHHHH-HHHhCCCcEeeEEE
Confidence 44444455666655543 3599999992 22235678888765 55789999877544
No 58
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=35.89 E-value=80 Score=29.97 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=36.2
Q ss_pred CChHHHHHHHHhccccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEecc
Q 022032 136 GTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLN 198 (303)
Q Consensus 136 GTPaDCV~laL~~~l~~~~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~ 198 (303)
|.-.-.+...|...+.. ..||||+.|- ...-.++|-||+.+ |.++|+|.|..-..
T Consensus 94 g~D~~~tA~~La~ai~~-~~~DLVl~G~------~s~D~~tgqvg~~l-Ae~Lg~P~vt~v~~ 148 (256)
T PRK03359 94 QALPQQTASALAAAAQK-AGFDLILCGD------GSSDLYAQQVGLLV-GEILNIPAINGVSK 148 (256)
T ss_pred CcCHHHHHHHHHHHHHH-hCCCEEEEcC------ccccCCCCcHHHHH-HHHhCCCceeeEEE
Confidence 44444555566655543 3599999992 22234788888866 45889999977654
No 59
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=35.67 E-value=1.3e+02 Score=29.04 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=45.3
Q ss_pred ecCChHHHHHHHHhccccCCCCCcEEEecCCCCC--------CCccccccchhHHHHHHHHHcCCCeeEEeccc
Q 022032 134 VSGTPVDCVSLALSGALFSWSKPLLVISGINRGS--------SCGHHMFYSGVVAGAREALICGVPSLSISLNW 199 (303)
Q Consensus 134 V~GTPaDCV~laL~~~l~~~~~PDLVVSGIN~G~--------N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~~ 199 (303)
+|-|=.|+|.--+.. .+||+||.=.-+=. .....|.--|+--=|..+...|.+-|=+|.++
T Consensus 34 ~Ditd~~~v~~~i~~-----~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDy 102 (281)
T COG1091 34 LDITDPDAVLEVIRE-----TRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDY 102 (281)
T ss_pred ccccChHHHHHHHHh-----hCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecce
Confidence 667778888877764 48999986543221 22233677888888999999999999999875
No 60
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=35.26 E-value=59 Score=29.11 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCC--ccHHHHHHHHHhcCCCcEEEEe
Q 022032 65 SKPVLLVTNGDGIES--PGLVYLVEALVREGLYNVHVCA 101 (303)
Q Consensus 65 ~~~~ILlTNDDGi~S--pGI~aL~~aL~~~G~~dV~VVA 101 (303)
.|.-||||. |+.+. ......++.|++.|. .|+.|+
T Consensus 132 ~kvvIllTD-g~~~~~~~~~~~~a~~l~~~GI-~i~tVG 168 (193)
T cd01477 132 KKVVIVFAS-DYNDEGSNDPRPIAARLKSTGI-AIITVA 168 (193)
T ss_pred CeEEEEEec-CccCCCCCCHHHHHHHHHHCCC-EEEEEE
Confidence 445588884 33322 346778888999883 677664
No 61
>PLN00016 RNA-binding protein; Provisional
Probab=35.23 E-value=51 Score=31.79 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=28.1
Q ss_pred CCCeEEEecCCCCCCccH-HHHHHHHHhcCCCcEEEEeeCC
Q 022032 65 SKPVLLVTNGDGIESPGL-VYLVEALVREGLYNVHVCAPQS 104 (303)
Q Consensus 65 ~~~~ILlTNDDGi~SpGI-~aL~~aL~~~G~~dV~VVAP~~ 104 (303)
..++|||||=+|=.+=.| ..|++.|.+.| |+|+++.-..
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRGK 90 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecCC
Confidence 446799998776544322 45788898888 7999888554
No 62
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=34.97 E-value=98 Score=29.41 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.0
Q ss_pred ccHHHHHHHHHhcCCCcEEEEeeCC
Q 022032 80 PGLVYLVEALVREGLYNVHVCAPQS 104 (303)
Q Consensus 80 pGI~aL~~aL~~~G~~dV~VVAP~~ 104 (303)
.-+..|+++|.+.| |+|+|+++..
T Consensus 24 ~~v~~la~~L~~~G-~~V~v~~~~~ 47 (405)
T TIGR03449 24 VYILETATELARRG-IEVDIFTRAT 47 (405)
T ss_pred ehHHHHHHHHhhCC-CEEEEEeccc
Confidence 45789999999999 7999999864
No 63
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=34.84 E-value=63 Score=27.27 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=25.7
Q ss_pred CCCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEe
Q 022032 65 SKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCA 101 (303)
Q Consensus 65 ~~~~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVA 101 (303)
.+.-||+| ||.....+...++.|++.|. ++++|+
T Consensus 104 ~k~iillT--DG~~~~~~~~~a~~lk~~gi-~i~~ig 137 (164)
T cd01482 104 PKVVILIT--DGKSQDDVELPARVLRNLGV-NVFAVG 137 (164)
T ss_pred CEEEEEEc--CCCCCchHHHHHHHHHHCCC-EEEEEe
Confidence 44557777 78877778888899999884 777764
No 64
>PLN00414 glycosyltransferase family protein
Probab=34.78 E-value=1.8e+02 Score=29.57 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCCcEEEEeeCCCCccc
Q 022032 82 LVYLVEALVREGLYNVHVCAPQSDKSVS 109 (303)
Q Consensus 82 I~aL~~aL~~~G~~dV~VVAP~~~qSg~ 109 (303)
+..|++.|.++| ++|+++.+..+.+-.
T Consensus 21 mL~LAk~Las~G-~~VT~vtt~~~~~~i 47 (446)
T PLN00414 21 YLHLANKLAEKG-HRVTFFLPKKAHKQL 47 (446)
T ss_pred HHHHHHHHHhCC-CEEEEEeCCchhhhh
Confidence 466899999999 699999988765433
No 65
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.00 E-value=20 Score=36.94 Aligned_cols=98 Identities=17% Similarity=0.203 Sum_probs=58.9
Q ss_pred CCCCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEeeCCCCc-ccccccCCC-CceEEEEeeeCCceeEEecCChHHH
Q 022032 64 SSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKS-VSGHSVTLR-ETIAVSSAEINGATAYEVSGTPVDC 141 (303)
Q Consensus 64 ~~~~~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~~qS-g~g~siT~~-~pl~v~~v~~~g~~~yaV~GTPaDC 141 (303)
+++|.|+|--++|-..--.....+.|+.+| +.++|.-|..-+. =.-.++... .-..+..+... ...-..+ +|+++
T Consensus 264 ~~~P~V~Ilcgpgnnggdg~v~gRHL~~~G-~~~vi~~pk~s~~~~~~~~L~~q~~~~~Ip~v~~~-~~l~~L~-s~~~l 340 (453)
T KOG2585|consen 264 HQWPLVAILCGPGNNGGDGLVCGRHLAQHG-YTPVIYYPKRSLNVDLYKSLVKQCDGFSIPSVSEL-PSLEDLN-SPVEL 340 (453)
T ss_pred CCCceEEEEeCCCCccchhHHHHHHHHHcC-ceeEEEeecCccchhHHHHHHHHhcCccccccccC-cchhhhC-cchhh
Confidence 456779999999997765555999999999 7999999986544 111111110 00011111100 1112344 99999
Q ss_pred HHHHHhccccC---CCCCcEEEecCC
Q 022032 142 VSLALSGALFS---WSKPLLVISGIN 164 (303)
Q Consensus 142 V~laL~~~l~~---~~~PDLVVSGIN 164 (303)
|.=||.++.|. ...+|-++++||
T Consensus 341 VVDAifGfsf~~~~r~~f~~i~~~i~ 366 (453)
T KOG2585|consen 341 VVDAIFGFSFKPPVRPPFDAIVAWIN 366 (453)
T ss_pred hhhhhccccccCCcccchhHHHHHHH
Confidence 99999985442 123455666666
No 66
>PRK09932 glycerate kinase II; Provisional
Probab=33.95 E-value=2.3e+02 Score=28.72 Aligned_cols=43 Identities=23% Similarity=0.147 Sum_probs=31.0
Q ss_pred CCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEecc
Q 022032 154 SKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLN 198 (303)
Q Consensus 154 ~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~ 198 (303)
+.-||||.| .|.=-.....=-..++-|+.|..+|+|.|+|+-.
T Consensus 283 ~~ADlVITG--EG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~ 325 (381)
T PRK09932 283 QGAALVITG--EGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGV 325 (381)
T ss_pred ccCCEEEEC--CCcccccccCCccHHHHHHHHHHcCCCEEEEecc
Confidence 468999998 3332222233345789999999999999999865
No 67
>PRK11249 katE hydroperoxidase II; Provisional
Probab=32.01 E-value=1.4e+02 Score=32.87 Aligned_cols=40 Identities=18% Similarity=0.358 Sum_probs=32.6
Q ss_pred CCCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEeeCCC
Q 022032 65 SKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSD 105 (303)
Q Consensus 65 ~~~~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~~ 105 (303)
+.++|.|-=.||++...+..++++|.+.| .+|.||+|...
T Consensus 596 ~gRKIaILVaDG~d~~ev~~~~daL~~AG-a~V~VVSp~~G 635 (752)
T PRK11249 596 KGRKVAILLNDGVDAADLLAILKALKAKG-VHAKLLYPRMG 635 (752)
T ss_pred cccEEEEEecCCCCHHHHHHHHHHHHHCC-CEEEEEECCCC
Confidence 34455555578999999999999999999 69999999763
No 68
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=32.00 E-value=3e+02 Score=24.45 Aligned_cols=75 Identities=13% Similarity=0.219 Sum_probs=45.8
Q ss_pred CCCeEEEecCCCCCCccH-HHHHHHHHhcCCCcEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHH
Q 022032 65 SKPVLLVTNGDGIESPGL-VYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVS 143 (303)
Q Consensus 65 ~~~~ILlTNDDGi~SpGI-~aL~~aL~~~G~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~yaV~GTPaDCV~ 143 (303)
+...||||--. -|| +++++.|.+.| ++|+++....+.-. . .....+.+|=+--+++.
T Consensus 8 ~~k~vlItG~s----~gIG~~la~~l~~~G-~~v~~~~~~~~~~~--------~---------~~~~~~~~D~~~~~~~~ 65 (266)
T PRK06171 8 QGKIIIVTGGS----SGIGLAIVKELLANG-ANVVNADIHGGDGQ--------H---------ENYQFVPTDVSSAEEVN 65 (266)
T ss_pred CCCEEEEeCCC----ChHHHHHHHHHHHCC-CEEEEEeCCccccc--------c---------CceEEEEccCCCHHHHH
Confidence 34569999543 366 66889999998 68888764432210 0 01234566766556666
Q ss_pred HHHhccccCCCCCcEEEe
Q 022032 144 LALSGALFSWSKPLLVIS 161 (303)
Q Consensus 144 laL~~~l~~~~~PDLVVS 161 (303)
-.+..+...+.++|.||.
T Consensus 66 ~~~~~~~~~~g~id~li~ 83 (266)
T PRK06171 66 HTVAEIIEKFGRIDGLVN 83 (266)
T ss_pred HHHHHHHHHcCCCCEEEE
Confidence 666554332357899886
No 69
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=31.74 E-value=1e+02 Score=31.30 Aligned_cols=102 Identities=19% Similarity=0.176 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCCCcEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEec-CChHHHHHHHHhccccCCCCCcEEE
Q 022032 82 LVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVS-GTPVDCVSLALSGALFSWSKPLLVI 160 (303)
Q Consensus 82 I~aL~~aL~~~G~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~yaV~-GTPaDCV~laL~~~l~~~~~PDLVV 160 (303)
-...+++|.+.| .||+++ -++-+|+.++.+.++--+..+++..+..=+ .|+.++. .++. -..|.|.
T Consensus 154 ~~~~v~~lv~aG-vDvI~i-----D~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~-~l~~------aGaD~I~ 220 (404)
T PRK06843 154 TIERVEELVKAH-VDILVI-----DSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAAL-DLIS------VGADCLK 220 (404)
T ss_pred HHHHHHHHHhcC-CCEEEE-----ECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHH-HHHH------cCCCEEE
Confidence 447889999999 688887 222255555443332111122233333324 5555443 3333 1479998
Q ss_pred ecCCCCCCCcccccc-ch--hHHHH---HHHH-HcCCCeeEEe
Q 022032 161 SGINRGSSCGHHMFY-SG--VVAGA---REAL-ICGVPSLSIS 196 (303)
Q Consensus 161 SGIN~G~N~G~dv~y-SG--TVgAA---~EA~-l~GIPAIAvS 196 (303)
.|+-.|..|++-... .| ++.+- .+.+ ..++|.||=.
T Consensus 221 vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdG 263 (404)
T PRK06843 221 VGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADG 263 (404)
T ss_pred ECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeC
Confidence 999999877665332 22 33332 2222 3589988643
No 70
>PRK15415 propanediol utilization protein PduB; Provisional
Probab=31.36 E-value=62 Score=31.23 Aligned_cols=55 Identities=25% Similarity=0.286 Sum_probs=44.7
Q ss_pred EecCChHHHHHHHHhccccCCCCCcEE-EecCCCCCCCccc--cccchhHHHHHHHHHc
Q 022032 133 EVSGTPVDCVSLALSGALFSWSKPLLV-ISGINRGSSCGHH--MFYSGVVAGAREALIC 188 (303)
Q Consensus 133 aV~GTPaDCV~laL~~~l~~~~~PDLV-VSGIN~G~N~G~d--v~ySGTVgAA~EA~l~ 188 (303)
.+.+.|+-.-..+.+..++. ...+|+ +..|..|.++|-- ++.+|.++|.++|+..
T Consensus 185 iie~~p~a~gi~aaD~AlKa-A~Velv~~~~p~~gt~~~Gk~~~~itGDvsAV~~Av~A 242 (266)
T PRK15415 185 IIVGAPAGIGVVMADTALKS-ANVDVVAYSSPAHGTSFSNEVILTISGDSGAVRQAVIA 242 (266)
T ss_pred EEEcCcHHHHHHHHHHHHhh-cCeeEEEEEcCccccccCCeEEEEEEecHHHHHHHHHH
Confidence 46799999888889887753 568888 7889999999875 5689999999998743
No 71
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=31.15 E-value=2.6e+02 Score=27.29 Aligned_cols=102 Identities=19% Similarity=0.151 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCCCcEEEEeeCCCCc-ccccccCCC--CceEEEEeeeCCceeEEec----CChHHHHHHHHh---cccc
Q 022032 82 LVYLVEALVREGLYNVHVCAPQSDKS-VSGHSVTLR--ETIAVSSAEINGATAYEVS----GTPVDCVSLALS---GALF 151 (303)
Q Consensus 82 I~aL~~aL~~~G~~dV~VVAP~~~qS-g~g~siT~~--~pl~v~~v~~~g~~~yaV~----GTPaDCV~laL~---~~l~ 151 (303)
+.-++++|++....++.+|.=-...+ -+|..+... .-+.+. -..-+.+. ++.++.+..++. .++.
T Consensus 16 lapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (365)
T TIGR03568 16 LRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDID-----EKIEILLDSDSNAGMAKSMGLTIIGFSDAFE 90 (365)
T ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHcCCCCC-----CccccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45688888874335777777443332 233222211 101110 00112232 344555554444 3333
Q ss_pred CCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEeccc
Q 022032 152 SWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNW 199 (303)
Q Consensus 152 ~~~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~~ 199 (303)
..+||+||.- |. .-=|+++|+.|..+|||.+-+-.+.
T Consensus 91 -~~~Pd~vlv~---GD-------~~~~la~alaA~~~~IPv~HveaG~ 127 (365)
T TIGR03568 91 -RLKPDLVVVL---GD-------RFEMLAAAIAAALLNIPIAHIHGGE 127 (365)
T ss_pred -HhCCCEEEEe---CC-------chHHHHHHHHHHHhCCcEEEEECCc
Confidence 3689998863 10 0126799999999999999887663
No 72
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=30.88 E-value=48 Score=30.51 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCCcEEEEeeCC
Q 022032 82 LVYLVEALVREGLYNVHVCAPQS 104 (303)
Q Consensus 82 I~aL~~aL~~~G~~dV~VVAP~~ 104 (303)
...|.++|.+.| |+|.|+.|.-
T Consensus 22 ~~~L~kaL~~~G-~~V~Vi~P~y 43 (245)
T PF08323_consen 22 VGSLPKALAKQG-HDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHTT--EEEEEEE-T
T ss_pred HHHHHHHHHhcC-CeEEEEEccc
Confidence 478999999999 7999999976
No 73
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=30.87 E-value=44 Score=27.09 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=18.2
Q ss_pred eEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEee
Q 022032 68 VLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAP 102 (303)
Q Consensus 68 ~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP 102 (303)
-||+|.|. -+..+++.|++.| .+|+|+..
T Consensus 99 ivLvSgD~-----Df~~~v~~l~~~g-~~V~v~~~ 127 (146)
T PF01936_consen 99 IVLVSGDS-----DFAPLVRKLRERG-KRVIVVGA 127 (146)
T ss_dssp EEEE---G-----GGHHHHHHHHHH---EEEEEE-
T ss_pred EEEEECcH-----HHHHHHHHHHHcC-CEEEEEEe
Confidence 48899883 3666788888889 69999984
No 74
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=30.56 E-value=52 Score=28.97 Aligned_cols=37 Identities=35% Similarity=0.419 Sum_probs=28.1
Q ss_pred EEecCCCCCCccHHHHHHHHHhcCCCcEEEEeeCCCCc
Q 022032 70 LVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKS 107 (303)
Q Consensus 70 LlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~~qS 107 (303)
+||+-.|-...-++.|++.|.+.| |+|+|+.+.....
T Consensus 4 ~i~~~~~g~~~~~~~l~~~L~~~g-~~v~~~~~~~~~~ 40 (359)
T cd03808 4 HIVTVDGGLYSFRLPLIKALRAAG-YEVHVVAPPGDEL 40 (359)
T ss_pred EEEecchhHHHHHHHHHHHHHhcC-CeeEEEecCCCcc
Confidence 444444555567888999999988 7999999887654
No 75
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=30.20 E-value=73 Score=28.59 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=25.5
Q ss_pred CCCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEe
Q 022032 65 SKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCA 101 (303)
Q Consensus 65 ~~~~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVA 101 (303)
.+.-|||| ||.....+...++.|++.| -.|++|+
T Consensus 109 ~kvvillT--DG~s~~~~~~~a~~lk~~g-v~i~~Vg 142 (224)
T cd01475 109 PRVGIVVT--DGRPQDDVSEVAAKARALG-IEMFAVG 142 (224)
T ss_pred CeEEEEEc--CCCCcccHHHHHHHHHHCC-cEEEEEe
Confidence 34457887 7777677888999999988 3677664
No 76
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=30.15 E-value=53 Score=33.72 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=32.6
Q ss_pred CCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEe
Q 022032 154 SKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSIS 196 (303)
Q Consensus 154 ~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS 196 (303)
.+||+||.|+- .|.|.-=.-.|||+.|.+. -.|||+|+-=
T Consensus 75 ~~pDv~iaGPa--FNagrYG~acg~va~aV~e-~~~IP~vt~M 114 (431)
T TIGR01918 75 KEPDIFIAGPA--FNAGRYGVACGEICKVVQD-KLNVPAVTSM 114 (431)
T ss_pred cCCCEEEEcCc--cCCccHHHHHHHHHHHHHH-hhCCCeEEEe
Confidence 58999999984 4777766678999998776 6799999764
No 77
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=30.09 E-value=54 Score=33.71 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=32.6
Q ss_pred CCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEe
Q 022032 154 SKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSIS 196 (303)
Q Consensus 154 ~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS 196 (303)
.+||+||.|+- .|.|.-=.-.|||+.|.+. -.|||+|+-=
T Consensus 75 ~~pDv~iaGPa--FNagrYG~acg~va~aV~e-~~~IP~vtaM 114 (431)
T TIGR01917 75 ANPDIFIAGPA--FNAGRYGMAAGAITKAVQD-ELGIKAFTAM 114 (431)
T ss_pred cCCCEEEEcCc--cCCccHHHHHHHHHHHHHH-hhCCCeEEEe
Confidence 58999999984 4777766678999998776 6799999764
No 78
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=29.94 E-value=72 Score=29.77 Aligned_cols=34 Identities=24% Similarity=0.058 Sum_probs=24.1
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcC-CCcEEEEeeCCC
Q 022032 67 PVLLVTNGDGIESPGLVYLVEALVREG-LYNVHVCAPQSD 105 (303)
Q Consensus 67 ~~ILlTNDDGi~SpGI~aL~~aL~~~G-~~dV~VVAP~~~ 105 (303)
|+||||+-. .++ .+++.|++.| .++|+++-+...
T Consensus 2 ~~vLv~g~~----~~~-~~~~~l~~~~~g~~vi~~d~~~~ 36 (326)
T PRK12767 2 MNILVTSAG----RRV-QLVKALKKSLLKGRVIGADISEL 36 (326)
T ss_pred ceEEEecCC----ccH-HHHHHHHHhccCCEEEEECCCCc
Confidence 689999873 334 7888888885 257777766543
No 79
>PRK14099 glycogen synthase; Provisional
Probab=29.37 E-value=1.3e+02 Score=30.71 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCCcEEEEeeCC
Q 022032 82 LVYLVEALVREGLYNVHVCAPQS 104 (303)
Q Consensus 82 I~aL~~aL~~~G~~dV~VVAP~~ 104 (303)
+.+|-++|++.| |+|.|+.|.-
T Consensus 26 ~~~lp~~l~~~g-~~v~v~~P~y 47 (485)
T PRK14099 26 AGALPAALKAHG-VEVRTLVPGY 47 (485)
T ss_pred HHHHHHHHHHCC-CcEEEEeCCC
Confidence 578999999999 7999999955
No 80
>PLN02208 glycosyltransferase family protein
Probab=29.30 E-value=2.1e+02 Score=29.04 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCCcEEEEeeCCCCcc
Q 022032 82 LVYLVEALVREGLYNVHVCAPQSDKSV 108 (303)
Q Consensus 82 I~aL~~aL~~~G~~dV~VVAP~~~qSg 108 (303)
+..|++.|..+| ++|+++.+...++-
T Consensus 21 ~l~LAk~La~~G-~~VT~vtt~~~~~~ 46 (442)
T PLN02208 21 FLHLANKLAEKG-HRVTFLLPKKAQKQ 46 (442)
T ss_pred HHHHHHHHHhCC-CEEEEEeccchhhh
Confidence 567999999999 79999998876553
No 81
>PF01205 UPF0029: Uncharacterized protein family UPF0029; InterPro: IPR001498 The Impact protein is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. This entry represents the N-terminal domain of the Impact proteins.; PDB: 1VI7_A 2CVE_A.
Probab=28.89 E-value=71 Score=26.63 Aligned_cols=32 Identities=34% Similarity=0.367 Sum_probs=24.2
Q ss_pred EEEecCCCCCC--ccHHHHHHHHHhcCCCcEEEEe
Q 022032 69 LLVTNGDGIES--PGLVYLVEALVREGLYNVHVCA 101 (303)
Q Consensus 69 ILlTNDDGi~S--pGI~aL~~aL~~~G~~dV~VVA 101 (303)
+-=.+|||--+ .|...| +.|+..+..||.||.
T Consensus 50 ~~~~~DDGEp~gtAG~piL-~~L~~~~l~nv~VVV 83 (110)
T PF01205_consen 50 IEGFSDDGEPGGTAGKPIL-EVLEHNGLTNVLVVV 83 (110)
T ss_dssp EEEEE-TTSSTTSSCHHHH-HHHHHCTB-SEEEEE
T ss_pred eecccCCCCCCCCccHHHH-HHHHhCCcCCEEEEE
Confidence 44578999988 999876 889998888987764
No 82
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=28.86 E-value=61 Score=27.98 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=15.4
Q ss_pred CCCCccHHHHHHHHHhcC
Q 022032 76 GIESPGLVYLVEALVREG 93 (303)
Q Consensus 76 Gi~SpGI~aL~~aL~~~G 93 (303)
.+-+||...+++.|++.|
T Consensus 26 ~~~~~~~~~a~~~l~~~G 43 (157)
T smart00775 26 DWTHPGVAKLYRDIQNNG 43 (157)
T ss_pred CcCCHHHHHHHHHHHHcC
Confidence 378899999999999865
No 83
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=28.86 E-value=92 Score=27.73 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=22.3
Q ss_pred CccHHHHHHHHHhcCCCcEEEEeeCCCCc
Q 022032 79 SPGLVYLVEALVREGLYNVHVCAPQSDKS 107 (303)
Q Consensus 79 SpGI~aL~~aL~~~G~~dV~VVAP~~~qS 107 (303)
..-+..|+++|.+.| |+|.++.+.....
T Consensus 17 ~~~~~~l~~~L~~~g-~~v~~~~~~~~~~ 44 (394)
T cd03794 17 AFRTTELAEELVKRG-HEVTVITGSPNYP 44 (394)
T ss_pred ceeHHHHHHHHHhCC-ceEEEEecCCCcc
Confidence 344788999999998 7999999875433
No 84
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=28.68 E-value=58 Score=29.95 Aligned_cols=32 Identities=34% Similarity=0.382 Sum_probs=24.0
Q ss_pred CCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEeccc
Q 022032 154 SKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNW 199 (303)
Q Consensus 154 ~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~~ 199 (303)
.+||||||=...- +.+.|...|||+|.++...
T Consensus 93 ~~pDlVIsD~~~~--------------~~~aa~~~giP~i~i~~~~ 124 (318)
T PF13528_consen 93 FRPDLVISDFYPL--------------AALAARRAGIPVIVISNQY 124 (318)
T ss_pred cCCCEEEEcChHH--------------HHHHHHhcCCCEEEEEehH
Confidence 5899999854221 4466788999999999764
No 85
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=28.27 E-value=1.2e+02 Score=29.39 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=26.7
Q ss_pred CCCCCCCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEe
Q 022032 61 NVDSSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCA 101 (303)
Q Consensus 61 ~~~~~~~~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVA 101 (303)
.+..++|+||||==-|+ -| +.|++.|.+.| |+|+.+.
T Consensus 16 ~~~~~~~~IlVtGgtGf--IG-~~l~~~L~~~G-~~V~~v~ 52 (370)
T PLN02695 16 YWPSEKLRICITGAGGF--IA-SHIARRLKAEG-HYIIASD 52 (370)
T ss_pred CCCCCCCEEEEECCccH--HH-HHHHHHHHhCC-CEEEEEE
Confidence 55668899999933333 23 56788888888 7998876
No 86
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=27.36 E-value=93 Score=25.80 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=23.6
Q ss_pred CCeEEEecCCCCCCccHHHHHHHHHh-cCCCcEEEEee
Q 022032 66 KPVLLVTNGDGIESPGLVYLVEALVR-EGLYNVHVCAP 102 (303)
Q Consensus 66 ~~~ILlTNDDGi~SpGI~aL~~aL~~-~G~~dV~VVAP 102 (303)
+.-||+| ||....+...+++.|++ .| ..|+.|+-
T Consensus 105 ~~villT--DG~~~~~~~~~~~~l~~~~~-v~v~~vg~ 139 (163)
T cd01476 105 KVVVVLT--DGRSHDDPEKQARILRAVPN-IETFAVGT 139 (163)
T ss_pred eEEEEEC--CCCCCCchHHHHHHHhhcCC-CEEEEEEC
Confidence 4457777 57666778888888888 65 45666654
No 87
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=26.74 E-value=62 Score=32.57 Aligned_cols=61 Identities=28% Similarity=0.220 Sum_probs=37.7
Q ss_pred EecCChHHHHHHHHhccccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEecc
Q 022032 133 EVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLN 198 (303)
Q Consensus 133 aV~GTPaDCV~laL~~~l~~~~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~ 198 (303)
.++|...=.=.+.|...+ ..-||||.| .|..-.....-....+-|+.|..+|+|.|+|.-.
T Consensus 265 l~sG~~~v~~~~~l~~~l---~~aDlVITG--EG~~D~Qtl~GK~p~~Va~~A~~~~vPviav~G~ 325 (377)
T PF02595_consen 265 LVSGIDLVLELLGLEERL---EDADLVITG--EGRLDAQTLAGKVPGGVARLAKKHGVPVIAVAGS 325 (377)
T ss_dssp EEEHHHHHHHHTTHHHHC---CC-SEEEE----CECSTTTTTTCHHHHHHCCHCCTT--EEEEECE
T ss_pred ECchHHHHHHhcCHHHHh---cCCCEEEEC--ccccccccCCCcHHHHHHHHHHHcCCcEEEEeCC
Confidence 355665555555666554 468999999 4443333344456777888899999999999865
No 88
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=26.59 E-value=91 Score=29.95 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=21.7
Q ss_pred CCccHHHHHHHHHhcCCCcEEEEeeCC
Q 022032 78 ESPGLVYLVEALVREGLYNVHVCAPQS 104 (303)
Q Consensus 78 ~SpGI~aL~~aL~~~G~~dV~VVAP~~ 104 (303)
.+.-+..|+++|.+.| |+|+|+.|..
T Consensus 16 ~e~~~~~la~~L~~~G-~~V~v~~~~~ 41 (398)
T cd03796 16 VETHIYQLSQCLIKRG-HKVVVITHAY 41 (398)
T ss_pred HHHHHHHHHHHHHHcC-CeeEEEeccC
Confidence 3456888999999999 7999999864
No 89
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=25.83 E-value=59 Score=33.50 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=29.0
Q ss_pred eEEEe-c-CCCCCCccHHHHHHHHHhcCCCcEEEEeeCCC
Q 022032 68 VLLVT-N-GDGIESPGLVYLVEALVREGLYNVHVCAPQSD 105 (303)
Q Consensus 68 ~ILlT-N-DDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~~ 105 (303)
+||+. . -.+=+--.++.++++|.++| |+|+|+.|...
T Consensus 22 kIl~~~P~~~~SH~~~~~~l~~~La~rG-H~VTvi~p~~~ 60 (507)
T PHA03392 22 RILAVFPTPAYSHHSVFKVYVEALAERG-HNVTVIKPTLR 60 (507)
T ss_pred cEEEEcCCCCCcHHHHHHHHHHHHHHcC-CeEEEEecccc
Confidence 38865 3 34446678999999999999 89999999753
No 90
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=25.55 E-value=75 Score=30.06 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=15.0
Q ss_pred chhHHHHHHHHHcCCCeeEE
Q 022032 176 SGVVAGAREALICGVPSLSI 195 (303)
Q Consensus 176 SGTVgAA~EA~l~GIPAIAv 195 (303)
|||+ .+||+.+|+|.|.+
T Consensus 269 sG~~--~lEa~a~G~PvI~~ 286 (380)
T PRK00025 269 SGTV--TLELALLKVPMVVG 286 (380)
T ss_pred ccHH--HHHHHHhCCCEEEE
Confidence 5764 45999999999987
No 91
>PRK15005 universal stress protein F; Provisional
Probab=25.40 E-value=1.4e+02 Score=24.00 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=24.1
Q ss_pred eeEEecCChHHHHHHHHhccccCCCCCcEEEecCCCCCCC
Q 022032 130 TAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSC 169 (303)
Q Consensus 130 ~~yaV~GTPaDCV~laL~~~l~~~~~PDLVVSGIN~G~N~ 169 (303)
+.....|.|++++.-.... .++||||-|- ++.++
T Consensus 87 ~~~v~~G~p~~~I~~~a~~-----~~~DLIV~Gs-~~~~~ 120 (144)
T PRK15005 87 HVHVEEGSPKDRILELAKK-----IPADMIIIAS-HRPDI 120 (144)
T ss_pred EEEEeCCCHHHHHHHHHHH-----cCCCEEEEeC-CCCCc
Confidence 4456789999987765442 4799999995 45443
No 92
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=25.38 E-value=1.6e+02 Score=30.17 Aligned_cols=59 Identities=24% Similarity=0.251 Sum_probs=42.1
Q ss_pred CChhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCeEEEecCCCC-CCccHHHHHH
Q 022032 9 MPPGLVSNLEQVLLNKKKKSKDNDDDGDDGTSKQSNEEANESTEPSTSDSTENVDSSKPVLLVTNGDGI-ESPGLVYLVE 87 (303)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILlTNDDGi-~SpGI~aL~~ 87 (303)
|=-.++|-|++||..|-..+++ . +... .|.|+-|| ...|..+|+.
T Consensus 188 LY~~~~s~La~v~~~~~~~n~~-------a------------------------r~sG---~iInT~g~i~~egy~~llh 233 (415)
T KOG2749|consen 188 LYKALVSELAEVLKQRLSLNPE-------A------------------------RVSG---CIINTCGWIEGEGYAALLH 233 (415)
T ss_pred HHHHHHHHHHHHHHHHhccCch-------h------------------------cccc---eEEeccceeccccHHHHHH
Confidence 4457899999999888744322 0 1222 36688898 6679999999
Q ss_pred HHHhcCCCcEEEEee
Q 022032 88 ALVREGLYNVHVCAP 102 (303)
Q Consensus 88 aL~~~G~~dV~VVAP 102 (303)
+.++.. .+|+||.=
T Consensus 234 ai~~f~-v~vviVLg 247 (415)
T KOG2749|consen 234 AIKAFE-VDVVIVLG 247 (415)
T ss_pred HHHHcC-ccEEEEec
Confidence 999988 47766653
No 93
>PRK06398 aldose dehydrogenase; Validated
Probab=25.23 E-value=4.7e+02 Score=23.39 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=42.2
Q ss_pred CCeEEEecCCCCCCccH-HHHHHHHHhcCCCcEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHH
Q 022032 66 KPVLLVTNGDGIESPGL-VYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSL 144 (303)
Q Consensus 66 ~~~ILlTNDDGi~SpGI-~aL~~aL~~~G~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~yaV~GTPaDCV~l 144 (303)
..+||||-- +-|| +++++.|.+.| ++|+++.-..... . . ...+.+|=+--+.+.-
T Consensus 6 gk~vlItGa----s~gIG~~ia~~l~~~G-~~Vi~~~r~~~~~---------~--~--------~~~~~~D~~~~~~i~~ 61 (258)
T PRK06398 6 DKVAIVTGG----SQGIGKAVVNRLKEEG-SNVINFDIKEPSY---------N--D--------VDYFKVDVSNKEQVIK 61 (258)
T ss_pred CCEEEEECC----CchHHHHHHHHHHHCC-CeEEEEeCCcccc---------C--c--------eEEEEccCCCHHHHHH
Confidence 357999953 3355 67889999999 7888775332110 0 1 1234555444455555
Q ss_pred HHhccccCCCCCcEEEe
Q 022032 145 ALSGALFSWSKPLLVIS 161 (303)
Q Consensus 145 aL~~~l~~~~~PDLVVS 161 (303)
++..+.....++|.||.
T Consensus 62 ~~~~~~~~~~~id~li~ 78 (258)
T PRK06398 62 GIDYVISKYGRIDILVN 78 (258)
T ss_pred HHHHHHHHcCCCCEEEE
Confidence 55544322357899986
No 94
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=24.95 E-value=1.3e+02 Score=24.21 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=23.3
Q ss_pred CCCeEEEecCCCCCCcc--HHHHHHHHHhcCCCcEEEEe
Q 022032 65 SKPVLLVTNGDGIESPG--LVYLVEALVREGLYNVHVCA 101 (303)
Q Consensus 65 ~~~~ILlTNDDGi~SpG--I~aL~~aL~~~G~~dV~VVA 101 (303)
.+.-||+| ||....+ +..+.+.|++.+ .+|++|+
T Consensus 104 ~~~iiliT--DG~~~~~~~~~~~~~~~~~~~-v~v~~i~ 139 (161)
T cd01450 104 PKVIIVLT--DGRSDDGGDPKEAAAKLKDEG-IKVFVVG 139 (161)
T ss_pred CeEEEEEC--CCCCCCCcchHHHHHHHHHCC-CEEEEEe
Confidence 44557777 4544433 888899999887 5777773
No 95
>TIGR01003 PTS_HPr_family Phosphotransferase System HPr (HPr) Family. The HPr family are bacterial proteins (or domains of proteins) which function in phosphoryl transfer system (PTS) systems. They include energy-coupling components which catalyze sugar uptake via a group translocation mechanism. The functions of most of these proteins are not known, but they presumably function in PTS-related regulatory capacities. All seed members are stand-alone HPr proteins, although the model also recognizes HPr domains of PTS fusion proteins. This family includes the related NPr protein.
Probab=24.57 E-value=1.1e+02 Score=23.69 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=30.0
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEe
Q 022032 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCA 101 (303)
Q Consensus 67 ~~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVA 101 (303)
-+|-|+|..|+++.=...|++...+.. .+|++..
T Consensus 4 ~~~~i~~~~GlHaRpA~~lv~~a~~f~-s~I~i~~ 37 (82)
T TIGR01003 4 KEVTIINKVGLHARPAAILVKLASGFD-SEITLTK 37 (82)
T ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCC-CEEEEEE
Confidence 458899999999999999999999987 6898874
No 96
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=24.56 E-value=75 Score=31.55 Aligned_cols=24 Identities=29% Similarity=0.236 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCCCcEEEEeeCCCC
Q 022032 82 LVYLVEALVREGLYNVHVCAPQSDK 106 (303)
Q Consensus 82 I~aL~~aL~~~G~~dV~VVAP~~~q 106 (303)
+..|.++|.+.| |+|.|+.|...+
T Consensus 23 v~~L~~aL~~~G-~~v~v~~p~y~~ 46 (473)
T TIGR02095 23 VGALPKALAALG-HDVRVLLPAYGC 46 (473)
T ss_pred HHHHHHHHHHcC-CeEEEEecCCcC
Confidence 588999999999 799999997764
No 97
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=24.34 E-value=1e+02 Score=25.90 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=25.5
Q ss_pred CCCCCCccHHHHHHHHHhcCCCcEEEEeeCC
Q 022032 74 GDGIESPGLVYLVEALVREGLYNVHVCAPQS 104 (303)
Q Consensus 74 DDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~ 104 (303)
-||++.-.+...++.|.+.| ++|.++.|..
T Consensus 7 ~~g~~~~e~~~~~~~l~~ag-~~v~~vs~~~ 36 (166)
T TIGR01382 7 TDEFEDSELLYPLDRLREAG-HEVDTVSKEA 36 (166)
T ss_pred cCCchHHHHHHHHHHHHHCC-CEEEEEecCC
Confidence 57788888999999999998 7999998754
No 98
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=24.27 E-value=82 Score=29.09 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=17.3
Q ss_pred cchhHHHHHHHHHcCCCeeEEec
Q 022032 175 YSGVVAGAREALICGVPSLSISL 197 (303)
Q Consensus 175 ySGTVgAA~EA~l~GIPAIAvS~ 197 (303)
.||+ ...+||+.+|+|.|++..
T Consensus 257 ~~g~-~~l~Ea~~~g~Pvv~~~~ 278 (348)
T TIGR01133 257 RAGA-STVAELAAAGVPAILIPY 278 (348)
T ss_pred CCCh-hHHHHHHHcCCCEEEeeC
Confidence 4663 366799999999999854
No 99
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=23.74 E-value=1.3e+02 Score=26.61 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=24.4
Q ss_pred CCCeEEEecCCCCCC----ccHHHHHHHHHhcCCCcEEEEe
Q 022032 65 SKPVLLVTNGDGIES----PGLVYLVEALVREGLYNVHVCA 101 (303)
Q Consensus 65 ~~~~ILlTNDDGi~S----pGI~aL~~aL~~~G~~dV~VVA 101 (303)
.|.-|||| ||... ..+...++.|++.|. .|++|+
T Consensus 109 ~kv~IllT--DG~s~~~~~~~~~~~a~~lk~~gV-~i~~vG 146 (192)
T cd01473 109 PKVTMLFT--DGNDTSASKKELQDISLLYKEENV-KLLVVG 146 (192)
T ss_pred CeEEEEEe--cCCCCCcchhhHHHHHHHHHHCCC-EEEEEE
Confidence 44568888 67654 357778889999984 777764
No 100
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=23.58 E-value=34 Score=34.01 Aligned_cols=35 Identities=29% Similarity=0.179 Sum_probs=22.0
Q ss_pred EEEecCCCCCCccHHHHHHHHHhcCCCcEEEEeeCC
Q 022032 69 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQS 104 (303)
Q Consensus 69 ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~ 104 (303)
|||..-.+=+.--++.+.++|.++| |+|+|+.|..
T Consensus 3 vLv~p~~~SH~~~~~~l~~~L~~rG-H~VTvl~~~~ 37 (500)
T PF00201_consen 3 VLVFPMAYSHFIFMRPLAEELAERG-HNVTVLTPSP 37 (500)
T ss_dssp ---------SHHHHHHHHHHHHHH--TTSEEEHHHH
T ss_pred EEEeCCCcCHHHHHHHHHHHHHhcC-CceEEEEeec
Confidence 5665544445567899999999999 7999999965
No 101
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=23.48 E-value=97 Score=29.70 Aligned_cols=37 Identities=32% Similarity=0.470 Sum_probs=29.8
Q ss_pred CCCCeEEEecCCCCCCccH-HHHHHHHHhcCCCcEEEEeeCCC
Q 022032 64 SSKPVLLVTNGDGIESPGL-VYLVEALVREGLYNVHVCAPQSD 105 (303)
Q Consensus 64 ~~~~~ILlTNDDGi~SpGI-~aL~~aL~~~G~~dV~VVAP~~~ 105 (303)
+.+.++||| =.|-|| +++++.|.+.| ++|++||-..+
T Consensus 4 ~~~~~~lIT----GASsGIG~~~A~~lA~~g-~~liLvaR~~~ 41 (265)
T COG0300 4 MKGKTALIT----GASSGIGAELAKQLARRG-YNLILVARRED 41 (265)
T ss_pred CCCcEEEEE----CCCchHHHHHHHHHHHCC-CEEEEEeCcHH
Confidence 455679999 356788 78999999999 79999997654
No 102
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=23.26 E-value=85 Score=31.43 Aligned_cols=39 Identities=31% Similarity=0.373 Sum_probs=30.1
Q ss_pred CCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEE
Q 022032 154 SKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSI 195 (303)
Q Consensus 154 ~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAv 195 (303)
.+||+||.|+- .|.|.-=.-.|+|+.|..- ..|||+|+-
T Consensus 79 ~~pD~viaGPa--FnagrYG~acg~v~~aV~e-~~~IP~vta 117 (349)
T PF07355_consen 79 LKPDVVIAGPA--FNAGRYGVACGEVAKAVQE-KLGIPVVTA 117 (349)
T ss_pred cCCCEEEEcCC--cCCchHHHHHHHHHHHHHH-hhCCCEEEE
Confidence 58999999984 4777665667888887655 569999954
No 103
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=22.96 E-value=4.7e+02 Score=25.17 Aligned_cols=38 Identities=13% Similarity=0.049 Sum_probs=27.1
Q ss_pred CCCCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEeeCCCC
Q 022032 64 SSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDK 106 (303)
Q Consensus 64 ~~~~~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~~q 106 (303)
..+++|||+. -| ..-+.+++++++.| ++|+++.+..+.
T Consensus 10 ~~~~~ilIiG-~g---~~~~~~~~a~~~~G-~~v~~~~~~~~~ 47 (395)
T PRK09288 10 PSATRVMLLG-SG---ELGKEVAIEAQRLG-VEVIAVDRYANA 47 (395)
T ss_pred CCCCEEEEEC-CC---HHHHHHHHHHHHCC-CEEEEEeCCCCC
Confidence 3567899994 34 23455777888999 699999877653
No 104
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=22.83 E-value=86 Score=19.45 Aligned_cols=25 Identities=24% Similarity=0.146 Sum_probs=21.3
Q ss_pred CCeEEEecCCCCCCccHHHHHHHHH
Q 022032 66 KPVLLVTNGDGIESPGLVYLVEALV 90 (303)
Q Consensus 66 ~~~ILlTNDDGi~SpGI~aL~~aL~ 90 (303)
.++.|==+|-.+.-.|.++|.++|+
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 3 SLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred ccCEEECCCCCCCHHHHHHHHHHhc
Confidence 4667777888999999999999986
No 105
>PRK06179 short chain dehydrogenase; Provisional
Probab=22.75 E-value=4.9e+02 Score=23.15 Aligned_cols=75 Identities=23% Similarity=0.294 Sum_probs=44.2
Q ss_pred CeEEEecCCCCCCccH-HHHHHHHHhcCCCcEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHHH
Q 022032 67 PVLLVTNGDGIESPGL-VYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLA 145 (303)
Q Consensus 67 ~~ILlTNDDGi~SpGI-~aL~~aL~~~G~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~yaV~GTPaDCV~la 145 (303)
.+||||--.| || +++++.|.+.| ++|++++...++-. + ..+.+.+.+|=+-.+-+.-+
T Consensus 5 ~~vlVtGasg----~iG~~~a~~l~~~g-~~V~~~~r~~~~~~---------~-------~~~~~~~~~D~~d~~~~~~~ 63 (270)
T PRK06179 5 KVALVTGASS----GIGRATAEKLARAG-YRVFGTSRNPARAA---------P-------IPGVELLELDVTDDASVQAA 63 (270)
T ss_pred CEEEEecCCC----HHHHHHHHHHHHCC-CEEEEEeCChhhcc---------c-------cCCCeeEEeecCCHHHHHHH
Confidence 4699996544 33 56888888888 78988875432210 0 01233455564544555556
Q ss_pred HhccccCCCCCcEEEec
Q 022032 146 LSGALFSWSKPLLVISG 162 (303)
Q Consensus 146 L~~~l~~~~~PDLVVSG 162 (303)
+..+.....++|+||.-
T Consensus 64 ~~~~~~~~g~~d~li~~ 80 (270)
T PRK06179 64 VDEVIARAGRIDVLVNN 80 (270)
T ss_pred HHHHHHhCCCCCEEEEC
Confidence 65543223579999863
No 106
>PF10841 DUF2644: Protein of unknown function (DUF2644); InterPro: IPR020300 This entry is represented by Bacteriophage PY100, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains membrane proteins with no known function.
Probab=22.72 E-value=32 Score=26.11 Aligned_cols=24 Identities=42% Similarity=0.587 Sum_probs=15.2
Q ss_pred EEecCCCCCCc-cHHHHHHHHHhcC
Q 022032 70 LVTNGDGIESP-GLVYLVEALVREG 93 (303)
Q Consensus 70 LlTNDDGi~Sp-GI~aL~~aL~~~G 93 (303)
||||+||--|. +.-.+.-+|.-.|
T Consensus 3 LiTN~dGrLSTT~~iQffg~lv~ag 27 (60)
T PF10841_consen 3 LITNADGRLSTTAFIQFFGALVMAG 27 (60)
T ss_pred cccCCCCcEehHHHHHHHHHHHHHH
Confidence 89999998663 4444555555443
No 107
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=22.13 E-value=1e+02 Score=28.77 Aligned_cols=29 Identities=34% Similarity=0.503 Sum_probs=23.1
Q ss_pred CCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEecc
Q 022032 155 KPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLN 198 (303)
Q Consensus 155 ~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~ 198 (303)
.-|||||. .| .-..|++.+|+|+|.+...
T Consensus 241 ~aDl~Is~-------------~G--~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 241 EADLAIGA-------------AG--STSWERCCLGLPSLAICLA 269 (279)
T ss_pred HCCEEEEC-------------Cc--hHHHHHHHcCCCEEEEEec
Confidence 46888884 44 3378999999999999875
No 108
>PRK13782 phosphocarrier protein Chr; Provisional
Probab=22.11 E-value=1.1e+02 Score=23.62 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=29.4
Q ss_pred eEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEe
Q 022032 68 VLLVTNGDGIESPGLVYLVEALVREGLYNVHVCA 101 (303)
Q Consensus 68 ~ILlTNDDGi~SpGI~aL~~aL~~~G~~dV~VVA 101 (303)
.+-|+|..|+|+.-...|++..++.. .+|++..
T Consensus 5 ~~~i~~~~GlHaRPA~~lv~~a~~f~-~~i~l~~ 37 (82)
T PRK13782 5 RVEVSLKTGLQARPAALFVQEANRFH-ADIFIEK 37 (82)
T ss_pred EEEEcCCCcccHHHHHHHHHHHHhCC-CEEEEEE
Confidence 58899999999999999999999987 6888863
No 109
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=22.02 E-value=1.6e+02 Score=26.29 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=26.5
Q ss_pred CCCeEEEecCCCCCC------ccHHHHHHHHHhcCCCcEEEEeeCC
Q 022032 65 SKPVLLVTNGDGIES------PGLVYLVEALVREGLYNVHVCAPQS 104 (303)
Q Consensus 65 ~~~~ILlTNDDGi~S------pGI~aL~~aL~~~G~~dV~VVAP~~ 104 (303)
.|--||+||+|.... .-+..+++.|.+.|. +++++.-..
T Consensus 128 ~k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~~gI-~i~~i~i~~ 172 (218)
T cd01458 128 HKRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKDKGI-ELELFPLSS 172 (218)
T ss_pred ccEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEecCC
Confidence 455599999988742 234567778887774 777776543
No 110
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=21.71 E-value=1e+02 Score=28.95 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=42.7
Q ss_pred EEEecCCCCCC-ccHHHHHHHHHhcCCCcEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHHHHh
Q 022032 69 LLVTNGDGIES-PGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALS 147 (303)
Q Consensus 69 ILlTNDDGi~S-pGI~aL~~aL~~~G~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~yaV~GTPaDCV~laL~ 147 (303)
|+|+ |||+.. .-+++-.+++++.+-.+++|..|-..++.+-. ++-....++++ -+|.+-..++.+
T Consensus 127 VIlV-DDGiATGatm~aAi~~~r~~~~~~IviAVPV~p~~a~~~------------l~s~~D~vvc~-~~P~~F~AVg~~ 192 (220)
T COG1926 127 VILV-DDGIATGATMKAAVRALRAKGPKEIVIAVPVAPEDAAAE------------LESEADEVVCL-YMPAPFEAVGEF 192 (220)
T ss_pred EEEE-eCCcchhHHHHHHHHHHHhcCCceEEEEcccCCHHHHHH------------HHhhcCeEEEE-cCCccHHHHHHH
Confidence 5555 999965 23567778888888789999999887776643 11122344444 467776555554
Q ss_pred c
Q 022032 148 G 148 (303)
Q Consensus 148 ~ 148 (303)
+
T Consensus 193 Y 193 (220)
T COG1926 193 Y 193 (220)
T ss_pred H
Confidence 3
No 111
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=21.51 E-value=1.4e+02 Score=25.02 Aligned_cols=29 Identities=34% Similarity=0.519 Sum_probs=26.9
Q ss_pred CCCCCCccHHHHHHHHHhcCCCcEEEEeeC
Q 022032 74 GDGIESPGLVYLVEALVREGLYNVHVCAPQ 103 (303)
Q Consensus 74 DDGi~SpGI~aL~~aL~~~G~~dV~VVAP~ 103 (303)
-||+.-..+..+++.|+..| ++|.+++|.
T Consensus 7 ~~gf~~~e~~~~~~~l~~a~-~~v~~vs~~ 35 (165)
T cd03134 7 ADGFEDVELTYPLYRLREAG-AEVVVAGPE 35 (165)
T ss_pred CCCchHHHHHHHHHHHHHCC-CEEEEEccC
Confidence 78999999999999999998 799999998
No 112
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=21.42 E-value=1.2e+02 Score=30.82 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=35.4
Q ss_pred CCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEecc
Q 022032 154 SKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLN 198 (303)
Q Consensus 154 ~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS~~ 198 (303)
..-||||.| .|.+-...+.=-=++|-|..|--+++|.||+--.
T Consensus 283 ~daDLVITG--EGr~D~Qs~~GK~pigVA~~Akk~~vPvIaiaGs 325 (378)
T COG1929 283 KDADLVITG--EGRIDSQSLHGKTPIGVAKLAKKYGVPVIAIAGS 325 (378)
T ss_pred ccCCEEEeC--CCcccccccCCccchHHHHhhhhhCCCEEEEecc
Confidence 468999999 6777666666667789999999999999999653
No 113
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=21.34 E-value=81 Score=27.22 Aligned_cols=21 Identities=43% Similarity=0.553 Sum_probs=16.8
Q ss_pred hHHHHHHHHHcCCCeeEEecc
Q 022032 178 VVAGAREALICGVPSLSISLN 198 (303)
Q Consensus 178 TVgAA~EA~l~GIPAIAvS~~ 198 (303)
-+=++.-|+.+|+|+|+++.+
T Consensus 265 RlH~~I~a~~~g~P~i~i~y~ 285 (286)
T PF04230_consen 265 RLHGAILALSLGVPVIAISYD 285 (286)
T ss_pred CCHHHHHHHHcCCCEEEEecC
Confidence 344677889999999999864
No 114
>PRK06182 short chain dehydrogenase; Validated
Probab=21.29 E-value=1.6e+02 Score=26.44 Aligned_cols=78 Identities=21% Similarity=0.237 Sum_probs=44.2
Q ss_pred CCeEEEecCCCCCCccH-HHHHHHHHhcCCCcEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHHHHH
Q 022032 66 KPVLLVTNGDGIESPGL-VYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSL 144 (303)
Q Consensus 66 ~~~ILlTNDDGi~SpGI-~aL~~aL~~~G~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~yaV~GTPaDCV~l 144 (303)
..+||||--. -|| +++++.|.+.| ++|++++-..++ .- .+ . ..+.+.+.+|=+-.+.+.-
T Consensus 3 ~k~vlItGas----ggiG~~la~~l~~~G-~~V~~~~r~~~~--l~-~~--~---------~~~~~~~~~Dv~~~~~~~~ 63 (273)
T PRK06182 3 KKVALVTGAS----SGIGKATARRLAAQG-YTVYGAARRVDK--ME-DL--A---------SLGVHPLSLDVTDEASIKA 63 (273)
T ss_pred CCEEEEECCC----ChHHHHHHHHHHHCC-CEEEEEeCCHHH--HH-HH--H---------hCCCeEEEeeCCCHHHHHH
Confidence 3579999532 244 56888888888 788877643221 00 00 0 0123445666555566655
Q ss_pred HHhccccCCCCCcEEEec
Q 022032 145 ALSGALFSWSKPLLVISG 162 (303)
Q Consensus 145 aL~~~l~~~~~PDLVVSG 162 (303)
.+..+.....++|.||.-
T Consensus 64 ~~~~~~~~~~~id~li~~ 81 (273)
T PRK06182 64 AVDTIIAEEGRIDVLVNN 81 (273)
T ss_pred HHHHHHHhcCCCCEEEEC
Confidence 565443223579999963
No 115
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=20.73 E-value=1.3e+02 Score=26.45 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=25.9
Q ss_pred CCeEEEecCCCCCCcc--HHHHHHHHHhcCCCcEEEEe
Q 022032 66 KPVLLVTNGDGIESPG--LVYLVEALVREGLYNVHVCA 101 (303)
Q Consensus 66 ~~~ILlTNDDGi~SpG--I~aL~~aL~~~G~~dV~VVA 101 (303)
.-+|||. || |-..| |++.++.|++.|...|.+++
T Consensus 152 ~~~vllv-DD-V~TTGaTl~~~~~~L~~~Ga~~V~~~~ 187 (190)
T TIGR00201 152 GRNIVLV-DD-VVTTGATLHEIARLLLELGAASVQVWT 187 (190)
T ss_pred CCEEEEE-ee-eeccHHHHHHHHHHHHHcCCCEEEEEE
Confidence 3478888 77 55556 88999999999876777665
No 116
>PRK08628 short chain dehydrogenase; Provisional
Probab=20.44 E-value=4e+02 Score=23.50 Aligned_cols=87 Identities=15% Similarity=0.141 Sum_probs=48.3
Q ss_pred CCCCCeEEEecCCCCCCccH-HHHHHHHHhcCCCcEEEEeeCCCCcccccccCCCCceEEEEeeeCCceeEEecCChHHH
Q 022032 63 DSSKPVLLVTNGDGIESPGL-VYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDC 141 (303)
Q Consensus 63 ~~~~~~ILlTNDDGi~SpGI-~aL~~aL~~~G~~dV~VVAP~~~qSg~g~siT~~~pl~v~~v~~~g~~~yaV~GTPaDC 141 (303)
+.+...||||--. -|| +++++.|.+.| ++|++++-..+.- .+.+.++-.. .....+.+|=+-.++
T Consensus 4 ~l~~~~ilItGas----ggiG~~la~~l~~~G-~~v~~~~r~~~~~------~~~~~~~~~~---~~~~~~~~D~~~~~~ 69 (258)
T PRK08628 4 NLKDKVVIVTGGA----SGIGAAISLRLAEEG-AIPVIFGRSAPDD------EFAEELRALQ---PRAEFVQVDLTDDAQ 69 (258)
T ss_pred CcCCCEEEEeCCC----ChHHHHHHHHHHHcC-CcEEEEcCChhhH------HHHHHHHhcC---CceEEEEccCCCHHH
Confidence 3444579999643 345 56888888888 6888876433211 1101110000 012345566565566
Q ss_pred HHHHHhccccCCCCCcEEEecC
Q 022032 142 VSLALSGALFSWSKPLLVISGI 163 (303)
Q Consensus 142 V~laL~~~l~~~~~PDLVVSGI 163 (303)
+.-.+..+...+.++|.||...
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~a 91 (258)
T PRK08628 70 CRDAVEQTVAKFGRIDGLVNNA 91 (258)
T ss_pred HHHHHHHHHHhcCCCCEEEECC
Confidence 6666665443345789998654
No 117
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=20.29 E-value=2.8e+02 Score=24.82 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=26.6
Q ss_pred hHHHHHHHHHcCCCeeEEecccCC-CCCCCcChHH----HHHHHHHHHHHHHH
Q 022032 178 VVAGAREALICGVPSLSISLNWKK-DESQESDFKD----AVSVCLPLINAATR 225 (303)
Q Consensus 178 TVgAA~EA~l~GIPAIAvS~~~~~-~~~~~~d~~~----aa~~~~~li~~l~~ 225 (303)
+.+-|.-|..+|+|.++|-.-.+. ++....+|+. |++.+.+++..+++
T Consensus 175 ~aa~a~va~~~~vp~~~ir~vSd~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (230)
T PRK05584 175 GAAIAQVCHEFGVPFVVVRAISDTADDEAHVSFDEFLAVAAKYSANILKRMLE 227 (230)
T ss_pred HHHHHHHHHHcCCCEEEEEEeccCCCCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566799999998543221 1122345654 45555566666554
No 118
>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []. It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.
Probab=20.21 E-value=67 Score=27.65 Aligned_cols=32 Identities=25% Similarity=0.231 Sum_probs=23.5
Q ss_pred cCCCCCCccHHHHHHHHHhcCCCcEEEEeeCCC
Q 022032 73 NGDGIESPGLVYLVEALVREGLYNVHVCAPQSD 105 (303)
Q Consensus 73 NDDGi~SpGI~aL~~aL~~~G~~dV~VVAP~~~ 105 (303)
|++.+...||..+++.+++.| |++++|.|..-
T Consensus 18 ~~~~f~~~~i~~~v~~~~~rG-~~~v~v~~~~~ 49 (155)
T PF11977_consen 18 NQKFFSVRGIQIAVEYFKSRG-HEVVVVFPPNY 49 (155)
T ss_dssp TTTSEEHHHHHHHHHHHHHTT----EEEEEEGG
T ss_pred CCCCcCHHHHHHHHHHHHHcC-CCeEEEEcchh
Confidence 344477889999999999999 68888888654
No 119
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=20.05 E-value=1.4e+02 Score=29.96 Aligned_cols=43 Identities=23% Similarity=0.205 Sum_probs=38.9
Q ss_pred CCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCeeEEe
Q 022032 154 SKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSIS 196 (303)
Q Consensus 154 ~~PDLVVSGIN~G~N~G~dv~ySGTVgAA~EA~l~GIPAIAvS 196 (303)
++.|+||.|-..=.--|.-+.-.||..-|+-|-.+|||-+.+.
T Consensus 237 ~~Vd~VivGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPfyV~A 279 (356)
T PRK08334 237 GKVDAIIVGADRIVANGDFANKIGTYTLAVLAKEHGIPFFTVA 279 (356)
T ss_pred cCCCEEEECccEEecCCCEeehhhHHHHHHHHHHhCCCEEEEc
Confidence 4799999999887777888889999999999999999999875
Done!