Query 022033
Match_columns 303
No_of_seqs 172 out of 730
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 12:59:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022033.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022033hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xhba2 c.68.1.17 (A:95-422) P 47.1 4.2 0.0003 34.0 2.3 31 2-33 211-245 (328)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 16.2 2.5E+02 0.018 22.3 9.3 27 273-299 46-72 (248)
3 d2axtm1 f.23.35.1 (M:1-36) Pho 9.4 1.4E+02 0.01 16.5 2.9 15 98-112 9-23 (36)
4 d3bula2 c.23.6.1 (A:741-896) M 7.8 89 0.0065 23.1 2.2 29 17-52 27-55 (156)
5 d2cxaa1 d.108.1.6 (A:1-232) Le 7.5 89 0.0065 25.0 2.1 18 9-26 111-128 (232)
6 d1o6ba_ c.26.1.3 (A:) Phosphop 6.6 68 0.005 22.7 0.9 17 39-55 142-158 (163)
7 d1f07a_ c.1.16.3 (A:) Coenzyme 6.4 1.5E+02 0.011 23.4 3.2 49 1-53 1-52 (321)
8 d2fkia1 d.198.3.1 (A:1-118) Hy 6.3 20 0.0015 25.6 -2.5 22 13-35 66-87 (118)
9 d2apla1 a.258.1.1 (A:2-150) Hy 5.9 1.7E+02 0.012 21.6 2.8 21 47-67 30-50 (149)
10 d1eeja1 c.47.1.9 (A:61-216) Di 5.9 1E+02 0.0074 22.2 1.5 48 9-59 106-155 (156)
No 1
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=47.06 E-value=4.2 Score=34.01 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=24.8
Q ss_pred ccc-cccCCc---hhhHHHhHHHHHHCCCeEEecCC
Q 022033 2 QVG-FMYHSL---VEDYFTGFKQLHCKGWRSVYLNP 33 (303)
Q Consensus 2 evG-~~~~si---TED~~Tg~~~Lh~~Gwrs~Y~~~ 33 (303)
+|| |.++-. .||.+.++| +..+||+..|++.
T Consensus 211 ~vGgfDe~~~~~g~ED~Dl~~R-~~~~G~~i~~~p~ 245 (328)
T d1xhba2 211 EIGTYDAGMDIWGGENLEISFR-IWQCGGTLEIVTC 245 (328)
T ss_dssp HTTSCCTTSCTTCCCCSHHHHH-HHHTTCEEEEEEE
T ss_pred HhCCCCCCCcCcCchHHHHHHH-HHHhCCeEEEeCC
Confidence 454 666543 499999999 9999999999864
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=16.16 E-value=2.5e+02 Score=22.26 Aligned_cols=27 Identities=7% Similarity=0.050 Sum_probs=23.0
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHhhh
Q 022033 273 KDNGRIPPSVTLSSALLSGIFLPLVSI 299 (303)
Q Consensus 273 ~~k~~~P~~~~~~~~~~~~~~~~~~~~ 299 (303)
-.|+..|...++..+++-++|.+++++
T Consensus 46 ~s~r~~p~kyi~PG~~~l~~Fvi~Pi~ 72 (248)
T d2r6gf1 46 ANRKAYAWRYVYPGMAGMGLFVLFPLV 72 (248)
T ss_dssp SSSCCTTHHHHHHHHHHHHHHTHHHHH
T ss_pred EccCccceehhhhHHHHHHHHHHHhhe
Confidence 356789999999999999999998743
No 3
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.37 E-value=1.4e+02 Score=16.55 Aligned_cols=15 Identities=27% Similarity=0.478 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 022033 98 LPLWCFATVPQLCLL 112 (303)
Q Consensus 98 ~~~l~~~l~P~l~ll 112 (303)
+....|+++|-.+|+
T Consensus 9 iAt~LFilvPt~FLl 23 (36)
T d2axtm1 9 IATALFVLVPSVFLI 23 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455666655554
No 4
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.80 E-value=89 Score=23.09 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=19.4
Q ss_pred hHHHHHHCCCeEEecCCCCCccccccCCChHHHhhH
Q 022033 17 GFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQ 52 (303)
Q Consensus 17 g~~~Lh~~Gwrs~Y~~~~~~af~GlaP~~l~~~~~Q 52 (303)
+.. |.++||+.+|+-. ...|+++.+..+|
T Consensus 27 ~~~-l~~~G~~Vi~LG~------~~p~e~~~~~~~~ 55 (156)
T d3bula2 27 GVV-LQCNNYEIVDLGV------MVPAEKILRTAKE 55 (156)
T ss_dssp HHH-HHTTTCEEEECCS------SBCHHHHHHHHHH
T ss_pred HHH-HHHCCCEEEECCC------CCCHHHHHHHHHh
Confidence 345 6789999999853 3456666655544
No 5
>d2cxaa1 d.108.1.6 (A:1-232) Leucyl/phenylalanyl-tRNA-protein transferase, LFTR (Aat) {Escherichia coli [TaxId: 562]}
Probab=7.47 E-value=89 Score=25.04 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=16.2
Q ss_pred CchhhHHHhHHHHHHCCC
Q 022033 9 SLVEDYFTGFKQLHCKGW 26 (303)
Q Consensus 9 siTED~~Tg~~~Lh~~Gw 26 (303)
=|+||+..++.+||..||
T Consensus 111 WI~~~ii~aY~~Lh~~G~ 128 (232)
T d2cxaa1 111 WITRGVVEAYHRLHELGH 128 (232)
T ss_dssp TCCHHHHHHHHHHHHTTS
T ss_pred chhHHHHHHHHHHHhCCe
Confidence 478999999988999998
No 6
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Probab=6.65 E-value=68 Score=22.70 Aligned_cols=17 Identities=18% Similarity=0.030 Sum_probs=14.0
Q ss_pred ccccCCChHHHhhHhhh
Q 022033 39 LGTSTTNLNDSLVQGTR 55 (303)
Q Consensus 39 ~GlaP~~l~~~~~Qr~R 55 (303)
.++.|+...+|++|+.|
T Consensus 142 ~~lVP~~V~~yI~e~~~ 158 (163)
T d1o6ba_ 142 SEFVPPEVELALQQKFR 158 (163)
T ss_dssp TTTSCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 37789999999998765
No 7
>d1f07a_ c.1.16.3 (A:) Coenzyme F420 dependent tetrahydromethanopterin reductase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=6.38 E-value=1.5e+02 Score=23.40 Aligned_cols=49 Identities=8% Similarity=0.049 Sum_probs=34.6
Q ss_pred Ccccc---ccCCchhhHHHhHHHHHHCCCeEEecCCCCCccccccCCChHHHhhHh
Q 022033 1 MQVGF---MYHSLVEDYFTGFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQG 53 (303)
Q Consensus 1 ~evG~---~~~siTED~~Tg~~~Lh~~Gwrs~Y~~~~~~af~GlaP~~l~~~~~Qr 53 (303)
|+.|. +...+-|.++.+-. ....|+.++++.|... .-.|.++.+.+.|+
T Consensus 1 M~fg~~~~p~~~~~~~~~~a~~-Ae~~Gfd~~w~~eh~~---~~~~~~~~a~~a~~ 52 (321)
T d1f07a_ 1 MKFGIEFVPNEPIEKIVKLVKL-AEDVGFEYAWITDHYN---NKNVYETLALIAEG 52 (321)
T ss_dssp CEEEEEECSSSCHHHHHHHHHH-HHHTTCCEEEECCCTT---SSCHHHHHHHHHHT
T ss_pred CeeEEEcCCCCcHHHHHHHHHH-HHHcCCCEEEEcccCC---CCcHHHHHHHHHHH
Confidence 56664 45577777888888 8899999999987432 34565666666554
No 8
>d2fkia1 d.198.3.1 (A:1-118) Hypothetical protein YjbR {Escherichia coli [TaxId: 562]}
Probab=6.26 E-value=20 Score=25.64 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=15.3
Q ss_pred hHHHhHHHHHHCCCeEEecCCCC
Q 022033 13 DYFTGFKQLHCKGWRSVYLNPER 35 (303)
Q Consensus 13 D~~Tg~~~Lh~~Gwrs~Y~~~~~ 35 (303)
++.-|.. |..+||-|++++..+
T Consensus 66 ~i~p~~h-m~k~hWvsv~l~~~v 87 (118)
T d2fkia1 66 DVRPSRH-LNKAHWSTVYLDGSL 87 (118)
T ss_dssp TTCCCCS-SCTTTEEEEECTTTS
T ss_pred cccccCc-cCCCceEEEECCCCC
Confidence 4445666 777899999986433
No 9
>d2apla1 a.258.1.1 (A:2-150) Hypothetical protein PG0816 {Porphyromonas gingivalis [TaxId: 837]}
Probab=5.93 E-value=1.7e+02 Score=21.59 Aligned_cols=21 Identities=10% Similarity=-0.042 Sum_probs=18.0
Q ss_pred HHHhhHhhhhhhhhHHHHHhh
Q 022033 47 NDSLVQGTRWSSGLVQVAISK 67 (303)
Q Consensus 47 ~~~~~Qr~RWa~G~~qi~~~~ 67 (303)
..++.||..||-.+.+=.++.
T Consensus 30 ~~FI~~Rad~Aa~aYe~A~~~ 50 (149)
T d2apla1 30 NPFITARSDEALTAYCDAVAQ 50 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHc
Confidence 579999999999999877643
No 10
>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.85 E-value=1e+02 Score=22.19 Aligned_cols=48 Identities=23% Similarity=0.377 Sum_probs=37.4
Q ss_pred CchhhHHHhHHHHHHCCCeEEec-CCCCCcccc-ccCCChHHHhhHhhhhhhh
Q 022033 9 SLVEDYFTGFKQLHCKGWRSVYL-NPERPQFLG-TSTTNLNDSLVQGTRWSSG 59 (303)
Q Consensus 9 siTED~~Tg~~~Lh~~Gwrs~Y~-~~~~~af~G-laP~~l~~~~~Qr~RWa~G 59 (303)
.+.+|...+-+ |.-+|==+.+. |-.... | ..++.+.+.+.|..|.+.|
T Consensus 106 ~i~~~~~la~~-lgv~GTPt~~~~nG~~v~--G~~~~e~l~~~i~~~~k~~~~ 155 (156)
T d1eeja1 106 DIADHYALGVQ-LGVSGTPAVVLSNGTLVP--GYQPPKEMKEFLDEHQKMTSG 155 (156)
T ss_dssp CHHHHHHHHHH-HTCCSSSEEECTTSCEEE--SCCCHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHH-cCCcCCCEEEEeCCeEec--CCCCHHHHHHHHHHHHHHhcC
Confidence 57788888888 88888888777 424433 7 4679999999999999876
Done!