Citrus Sinensis ID: 022034

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
MGKRKRGDANNPIDIVSSTPEDPGHLSKHRTCWLHTVAFLHARKMKISKQKIRNFELTAPCFLGTFSCRRRSKRRVKCKNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSSEN
ccccccccccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHccccccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEccccccccccccHHHHHHHHHccccccccEEEEcEEccccEEEEEEEcccccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHccccccccccccEEEEccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHccc
ccccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHEcccccHHHcccccccccccccccccccccccccccccccHHHcccccccccccHHHHHHHHHHHHHHccHcccccccEEEEEEHccccHHcccccHHHHccccccccccEEEEEEEcccEEEEEEEEcccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccHcccHHHcccccccHHHHHHHHHHHHcccc
mgkrkrgdannpidivsstpedpghlskhrtcWLHTVAFLHARKMKISKQKIrnfeltapcflgtfscrrrskrrvkckntslikgknsssvkckDMITKrkknkldsgkfeHLLDNLWRSfsedkkagftyLDSLWfdlyrkpsskakVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCnfggsfesktrtpcMLLLDslemsnpwrfepdIRKFVMDIYKAEDRPETKElisripllvpkvpqqrngeecGNFVLYFINLFvegapenfnledypyfmeknwftaeDLDCFCERLNSSEN
mgkrkrgdannpidivsstpedpghlSKHRTCWLHTVAFLHARKMKISKQkirnfeltapcflgtfscrrrskrrvkckntslikgknsssvkckdmitkrkknkldsgkfeHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETkelisripllvpkvpqqrngEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSSEN
MGKRKRGDANNPIDIVSSTPEDPGHLSKHRTCWLHTVAFLHARKMKISKQKIRNFELTAPCFLGTFscrrrskrrvkckNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSSEN
****************************HRTCWLHTVAFLHARKMKISKQKIRNFELTAPCFLGTFSCRRRSKRRVKC*******************************KFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCER******
******************************************************************************************SVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNS***
*********NNPIDIVSSTPEDPGHLSKHRTCWLHTVAFLHARKMKISKQKIRNFELTAPCFLGTFSCRR*********NTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSSEN
********ANNPIDIVSSTPEDPGHLSKHRTCWLHTVAFLHARKMKISKQKIRNFELTAPCFLGTFSCR*****RV***NTSL******SSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLN****
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MGKRKRGDANNPIDIVSSTPEDPGHLSKHRTCWLHTVAFLHARKMKISKQKIRNFELTAPCFLGTFSCRRRSKRRVKCKNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSSEN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query303 2.2.26 [Sep-21-2011]
Q0WKV8 774 Probable ubiquitin-like-s no no 0.465 0.182 0.328 4e-16
Q8L7S0 931 Probable ubiquitin-like-s no no 0.485 0.157 0.267 2e-12
Q2PS26584 Ubiquitin-like-specific p no no 0.455 0.236 0.320 2e-11
Q8RWN0571 Ubiquitin-like-specific p no no 0.442 0.234 0.297 3e-09
O13769638 Ubiquitin-like-specific p yes no 0.386 0.183 0.302 9e-07
D3ZF421037 Sentrin-specific protease yes no 0.442 0.129 0.225 1e-06
Q9BQF61050 Sentrin-specific protease no no 0.442 0.127 0.225 1e-06
A7MBJ21047 Sentrin-specific protease yes no 0.442 0.127 0.225 2e-06
Q9EQE1588 Sentrin-specific protease no no 0.488 0.251 0.260 3e-05
Q94F30489 Ubiquitin-like-specific p no no 0.343 0.212 0.307 4e-05
>sp|Q0WKV8|ULP2A_ARATH Probable ubiquitin-like-specific protease 2A OS=Arabidopsis thaliana GN=ULP2A PE=2 SV=2 Back     alignment and function desciption
 Score = 85.5 bits (210), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 11/152 (7%)

Query: 149 KVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFG----GSFESKTRTPCMLLLDSLEM 204
           +V  W K   +F K Y+ +PI C  HW+L+I+C+ G       E+  R PC+L LDS++ 
Sbjct: 375 RVQKWTKNVDLFEKDYIFIPINCSFHWSLVIICHPGELVPSHVENPQRVPCILHLDSIKG 434

Query: 205 SNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVP---KVPQQRNGEECGNFVLYFI 261
           S+          ++ + +KA     T +  SR P +     ++PQQ N  +CG F+L+++
Sbjct: 435 SHKGGLINIFPSYLREEWKARHENTTNDS-SRAPNMQSISLELPQQENSFDCGLFLLHYL 493

Query: 262 NLFVEGAPENFN---LEDYPYFMEKNWFTAED 290
           +LFV  AP  FN   +     F+ +NWF A++
Sbjct: 494 DLFVAQAPAKFNPSLISRSANFLTRNWFPAKE 525
Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 6EC: 8
>sp|Q8L7S0|ULP2B_ARATH Probable ubiquitin-like-specific protease 2B OS=Arabidopsis thaliana GN=ULP2B PE=2 SV=3 Back     alignment and function description
>sp|Q2PS26|ULP1D_ARATH Ubiquitin-like-specific protease 1D OS=Arabidopsis thaliana GN=ULP1D PE=1 SV=1 Back     alignment and function description
>sp|Q8RWN0|ULP1C_ARATH Ubiquitin-like-specific protease 1C OS=Arabidopsis thaliana GN=ULP1C PE=1 SV=1 Back     alignment and function description
>sp|O13769|ULP2_SCHPO Ubiquitin-like-specific protease 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ulp2 PE=1 SV=2 Back     alignment and function description
>sp|D3ZF42|SENP7_RAT Sentrin-specific protease 7 OS=Rattus norvegicus GN=Senp7 PE=2 SV=1 Back     alignment and function description
>sp|Q9BQF6|SENP7_HUMAN Sentrin-specific protease 7 OS=Homo sapiens GN=SENP7 PE=1 SV=4 Back     alignment and function description
>sp|A7MBJ2|SENP7_BOVIN Sentrin-specific protease 7 OS=Bos taurus GN=SENP7 PE=2 SV=1 Back     alignment and function description
>sp|Q9EQE1|SENP2_RAT Sentrin-specific protease 2 OS=Rattus norvegicus GN=Senp2 PE=1 SV=1 Back     alignment and function description
>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana GN=ESD4 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query303
359491154295 PREDICTED: uncharacterized protein LOC10 0.937 0.962 0.580 2e-93
255540373294 sentrin/sumo-specific protease, putative 0.950 0.979 0.577 3e-91
224109184298 predicted protein [Populus trichocarpa] 0.920 0.936 0.581 3e-90
388499368284 unknown [Lotus japonicus] 0.646 0.690 0.719 9e-78
356507339279 PREDICTED: uncharacterized protein LOC10 0.660 0.716 0.665 9e-74
224136047186 predicted protein [Populus trichocarpa] 0.610 0.994 0.691 1e-69
307136120274 sentrin/sumo-specific protease [Cucumis 0.778 0.861 0.537 3e-68
449469608274 PREDICTED: probable ubiquitin-like-speci 0.785 0.868 0.521 6e-67
240255544298 cysteine-type peptidase [Arabidopsis tha 0.881 0.895 0.455 4e-64
255547470284 sentrin/sumo-specific protease, putative 0.600 0.640 0.619 8e-62
>gi|359491154|ref|XP_002262951.2| PREDICTED: uncharacterized protein LOC100251251 [Vitis vinifera] gi|297733618|emb|CBI14865.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 177/305 (58%), Positives = 217/305 (71%), Gaps = 21/305 (6%)

Query: 1   MGKRKRGDANNPIDIVSSTPEDPGHLSKHRTCWLHTVAFLHARKMKISKQKIRNFEL--- 57
           M K+K  ++N PID+ S+  E     SKHR+CW H VA L A+  +++K +I   +    
Sbjct: 1   MVKKKPRNSNAPIDLASADSESYLDYSKHRSCWRHMVAHLQAQNKRMTKHEIEEIKEIFE 60

Query: 58  -TAPCFLGTFSCRRRSKRRVKCKNTSLIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLD 116
            T PCF  TF    RSKRR+ CKN                +I +++K KLD+  FE    
Sbjct: 61  FTTPCFSNTFPRHERSKRRINCKN----------------IIIRKEKKKLDTAAFEWYFR 104

Query: 117 NLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWN 176
           NLW+SFS+DKK+ F YLD LWF  Y K SS+ KVL WIK+K IFS+KYV VPIVCW HW+
Sbjct: 105 NLWKSFSDDKKSSFGYLDCLWFSFYLKTSSREKVLNWIKKKRIFSRKYVFVPIVCWNHWS 164

Query: 177 LLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISR 236
           LLILC+FG S ESK R PCMLLLDSL+M+NP R EP+IRKFV DIYK E RPE+K+LIS+
Sbjct: 165 LLILCHFGESLESKIRAPCMLLLDSLQMANPKRLEPNIRKFVFDIYKEEGRPESKQLISK 224

Query: 237 IPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNL-EDYPYFMEKNWFTAEDLDCFC 295
           IPLLVPKVPQQRNGEECGNFVLYFINLF++GAPENF++ E YPYFM+KNWF  E L+ F 
Sbjct: 225 IPLLVPKVPQQRNGEECGNFVLYFINLFMDGAPENFSVSEGYPYFMKKNWFGPEALEHFF 284

Query: 296 ERLNS 300
            +L+S
Sbjct: 285 RKLDS 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255540373|ref|XP_002511251.1| sentrin/sumo-specific protease, putative [Ricinus communis] gi|223550366|gb|EEF51853.1| sentrin/sumo-specific protease, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224109184|ref|XP_002315114.1| predicted protein [Populus trichocarpa] gi|222864154|gb|EEF01285.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388499368|gb|AFK37750.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356507339|ref|XP_003522425.1| PREDICTED: uncharacterized protein LOC100780621 [Glycine max] Back     alignment and taxonomy information
>gi|224136047|ref|XP_002322226.1| predicted protein [Populus trichocarpa] gi|222869222|gb|EEF06353.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|307136120|gb|ADN33966.1| sentrin/sumo-specific protease [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|449469608|ref|XP_004152511.1| PREDICTED: probable ubiquitin-like-specific protease 2B-like [Cucumis sativus] gi|449487716|ref|XP_004157765.1| PREDICTED: probable ubiquitin-like-specific protease 2B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|240255544|ref|NP_190417.4| cysteine-type peptidase [Arabidopsis thaliana] gi|332644900|gb|AEE78421.1| cysteine-type peptidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255547470|ref|XP_002514792.1| sentrin/sumo-specific protease, putative [Ricinus communis] gi|223545843|gb|EEF47346.1| sentrin/sumo-specific protease, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query303
TAIR|locus:2101130298 AT3G48480 [Arabidopsis thalian 0.834 0.848 0.467 6.2e-62
DICTYBASE|DDB_G0293508 1035 DDB_G0293508 [Dictyostelium di 0.518 0.151 0.276 6.8e-11
TAIR|locus:2195598584 ULP1D "UB-like protease 1D" [A 0.442 0.229 0.328 1.5e-10
DICTYBASE|DDB_G0289557 778 DDB_G0289557 "peptidase C48 fa 0.541 0.210 0.273 9e-10
TAIR|locus:2194574571 OTS2 "OVERLY TOLERANT TO SALT 0.455 0.241 0.296 2.9e-09
UNIPROTKB|J3QT09985 SENP7 "Sentrin-specific protea 0.293 0.090 0.309 6.1e-08
MGI|MGI:19135651037 Senp7 "SUMO1/sentrin specific 0.293 0.085 0.309 6.9e-08
RGD|13055101037 Senp7 "SUMO1/sentrin specific 0.293 0.085 0.309 6.9e-08
UNIPROTKB|Q9BQF61050 SENP7 "Sentrin-specific protea 0.293 0.084 0.309 7.1e-08
UNIPROTKB|A7MBJ21047 SENP7 "Sentrin-specific protea 0.293 0.085 0.309 9.1e-08
TAIR|locus:2101130 AT3G48480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 129/276 (46%), Positives = 174/276 (63%)

Query:    29 HRTCWLHTVAFLHARKMKISKQK-IRNFELTAPCFLGTFXXXXXXXXXXXXXNTSLIKGK 87
             HRTCW H  A L     K  + K +  F+LTAPCF                      +G+
Sbjct:    37 HRTCWKHIAAALSKCGSKPKRTKELEIFKLTAPCFYDECTR----------------RGR 80

Query:    88 NSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSS- 146
             +   +KCK + +K +K KL+S  F   L+++WR FS++KK  F YLD LWF +Y+  +  
Sbjct:    81 SERRIKCKYLDSKLRK-KLNSKAFVGYLEDVWRGFSDEKKNSFVYLDCLWFSMYKSENHN 139

Query:   147 -KAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMS 205
              ++ V   +K K IFSKKYV +PIV W HW LLI CNFG   +S  +T CML LDSL+ +
Sbjct:   140 IRSSVFDSVKTKQIFSKKYVFLPIVYWSHWTLLIFCNFGEDLDSD-KT-CMLFLDSLQTT 197

Query:   206 NP-WRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLF 264
             +   R EPDIRKFV+DIY+AE R E   L+  IP  VP VPQQ N  ECG+FVLY+I+ F
Sbjct:   198 DSSQRLEPDIRKFVLDIYRAEGRTEDSSLVDEIPFYVPMVPQQTNDVECGSFVLYYIHRF 257

Query:   265 VEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNS 300
             +E APENFN+ED PYF++++WF+ +DL+ FC+ L+S
Sbjct:   258 IEDAPENFNVEDMPYFLKEDWFSHKDLEKFCDELHS 293
GO:0005634 "nucleus" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
GO:0008234 "cysteine-type peptidase activity" evidence=IEA
DICTYBASE|DDB_G0293508 DDB_G0293508 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2195598 ULP1D "UB-like protease 1D" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289557 DDB_G0289557 "peptidase C48 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2194574 OTS2 "OVERLY TOLERANT TO SALT 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|J3QT09 SENP7 "Sentrin-specific protease 7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1913565 Senp7 "SUMO1/sentrin specific peptidase 7" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1305510 Senp7 "SUMO1/sentrin specific peptidase 7" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BQF6 SENP7 "Sentrin-specific protease 7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A7MBJ2 SENP7 "Sentrin-specific protease 7" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.220.691
3rd Layer3.4.22.68LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
COG5160578 COG5160, ULP1, Protease, Ulp1 family [Posttranslat 3e-12
pfam02902216 pfam02902, Peptidase_C48, Ulp1 protease family, C- 3e-08
PLN03189490 PLN03189, PLN03189, Protease specific for SMALL UB 0.002
>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score = 66.5 bits (162), Expect = 3e-12
 Identities = 46/131 (35%), Positives = 62/131 (47%), Gaps = 15/131 (11%)

Query: 150 VLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWR 209
           V  W K+  IFSKKY+ +PI    HW L I+ N             +L  DSL  +    
Sbjct: 441 VRRWTKKTDIFSKKYIFIPINISYHWFLAIIDN---------PKKNILYFDSLANT-HDP 490

Query: 210 FEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAP 269
               +R +++D YK       K+   +  +   KVPQQRNG +CG FV  FI  F+E  P
Sbjct: 491 VLEFLRSYLLDEYK---IQHDKDPQIK--MKHCKVPQQRNGSDCGVFVCMFIRYFLENPP 545

Query: 270 ENFNLEDYPYF 280
           E F+  D P  
Sbjct: 546 EQFSKNDRPRA 556

Length = 578
>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain Back     alignment and domain information
>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 303
KOG0778511 consensus Protease, Ulp1 family [Posttranslational 100.0
PLN03189490 Protease specific for SMALL UBIQUITIN-RELATED MODI 100.0
COG5160578 ULP1 Protease, Ulp1 family [Posttranslational modi 100.0
PF02902216 Peptidase_C48: Ulp1 protease family, C-terminal ca 99.97
KOG3246223 consensus Sentrin-specific cysteine protease (Ulp1 99.96
KOG0779595 consensus Protease, Ulp1 family [Posttranslational 99.78
PF03290423 Peptidase_C57: Vaccinia virus I7 processing peptid 97.23
PRK11836403 deubiquitinase; Provisional 96.96
PRK14848317 deubiquitinase SseL; Provisional 96.72
PF00770183 Peptidase_C5: Adenovirus endoprotease; InterPro: I 92.59
PF03421177 YopJ: YopJ Serine/Threonine acetyltransferase; Int 90.21
PRK15371287 effector protein YopJ; Provisional 80.81
>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-45  Score=358.33  Aligned_cols=183  Identities=25%  Similarity=0.399  Sum_probs=159.3

Q ss_pred             CCeeeecccccccCCCCCCCHHHHHHHHHHHHhhhcccc-CCCeEEEechhhhhhcCCCchHHHHHHHhhccccccceEE
Q 022034           88 NSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDK-KAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVL  166 (303)
Q Consensus        88 ~~~~i~~~Dl~~L~~~~wLND~iI~~yl~~L~~~~~~~~-~~~~~~~~s~ff~~l~~~~~~~~v~~w~k~~~if~k~~I~  166 (303)
                      ++++||.+||.||.+++||||+||||||++|.+....+. -.++|+||+|||++|. ..||++|+|||+++|||++|.||
T Consensus       316 ~~i~It~~dl~tl~~~~WLNDevINfYm~ll~ers~~~~~yp~~h~FnTFFy~kL~-~~gy~~VkRWTk~v~if~~d~i~  394 (511)
T KOG0778|consen  316 FNIDITGKDLQTLRPGNWLNDEVINFYMELLKERSKKDSKYPKVHAFNTFFYTKLV-GRGYAGVKRWTKKVDIFDKDIIF  394 (511)
T ss_pred             ccccccHHHHhhccCccchhHHHHHHHHHHHHhhccccCCCceEEEEechhhhhhh-hcchHHHHhHhhccCccccceeE
Confidence            569999999999999999999999999999987554332 2568999999999987 56899999999999999999999


Q ss_pred             EeeecCCceeEEEEecCCCCCCCCCCCCeEEEeeCCCCCCCcchHHHHHHHHHHHHHhcCCCCcccccCCceee-CCCCC
Q 022034          167 VPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLL-VPKVP  245 (303)
Q Consensus       167 iPIn~~~HW~L~Vi~~p~~~~~s~~~~~~i~~~DSl~~~~~~~l~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~-~~~vP  245 (303)
                      ||||.+.||+|+||+.         ++++|.|||||++...+.. ..|.+||.+++..+.+.  .+....|.+. ..++|
T Consensus       395 vPIH~~vHW~l~vid~---------r~k~i~y~DS~~~~~nr~~-~aL~~Yl~~E~~~k~~~--~~d~s~w~~~~~~~iP  462 (511)
T KOG0778|consen  395 VPIHLGVHWCLAVIDL---------REKTIEYYDSLGGGPNRIC-DALAKYLQDESRDKSKK--DFDVSGWTIEFVQNIP  462 (511)
T ss_pred             eeeecCceEEEEEEEc---------ccceEEEeeccCCCCcchH-HHHHHHHHHHHhhhhcC--CCCccchhhhhhhccc
Confidence            9999999999999995         4589999999997765434 79999999988765432  2344678864 45899


Q ss_pred             CCCCCCchHHHHHHHHHHHHcCCCCCcCCCCCcchhhc
Q 022034          246 QQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEK  283 (303)
Q Consensus       246 qQ~N~~DCGvfVl~f~~~~~~~~~~~f~~~d~p~fr~~  283 (303)
                      ||.||+|||||||+|++|+.++.|+.|+|.|||+||+.
T Consensus       463 ~Q~Ng~DCG~f~c~~~~~~s~~~p~~ftq~dmp~fR~~  500 (511)
T KOG0778|consen  463 QQRNGSDCGMFVCKYADYISRDVPLTFTQQDMPYFRKK  500 (511)
T ss_pred             cccCCCccceEEeeechhhccCCCcccChhhhHHHHHH
Confidence            99999999999999999999999999999999999974

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information
>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification Back     alignment and domain information
>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only] Back     alignment and domain information
>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK11836 deubiquitinase; Provisional Back     alignment and domain information
>PRK14848 deubiquitinase SseL; Provisional Back     alignment and domain information
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp Back     alignment and domain information
>PRK15371 effector protein YopJ; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
3eay_A323 Crystal Structure Of The Human Senp7 Catalytic Doma 3e-07
2xph_A238 Crystal Structure Of Human Senp1 With The Bound Cob 9e-06
2ckg_A225 The Structure Of Senp1 Sumo-2 Co-Complex Suggests A 9e-06
2xre_A230 Detection Of Cobalt In Previously Unassigned Human 1e-05
2iyc_A226 Senp1 Native Structure Length = 226 1e-05
1tgz_A226 Structure Of Human Senp2 In Complex With Sumo-1 Len 3e-05
2g4d_A205 Crystal Structure Of Human Senp1 Mutant (C603s) In 1e-04
2iy0_A226 Senp1 (Mutant) Sumo1 Rangap Length = 226 1e-04
2io0_A232 Crystal Structure Of Human Senp2 In Complex With Pr 3e-04
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain Length = 323 Back     alignment and structure 
Iteration: 1

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 79/191 (41%), Gaps = 57/191 (29%)
Query: 149 KVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILC--------------------------N 182
           +V TW +  +IF+K Y+ VP+    HW L ++C                          N
Sbjct: 108 RVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQN 167
Query: 183 FGGSFESKTRT---------------------------PCMLLLDSLEMSNPWRFEPDIR 215
              + ++  RT                           PC+L+LDSL+ ++      ++R
Sbjct: 168 DNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLR 227
Query: 216 KFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLE 275
           +++   ++ + +   +   + +  L PKVP+Q N  +CG ++L ++  F +    NF L 
Sbjct: 228 EYLEVEWEVKLKTHRQFSKTNMVDLCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFEL- 286
Query: 276 DYPYFMEKNWF 286
             P  +EK WF
Sbjct: 287 --PIHLEK-WF 294
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt Length = 238 Back     alignment and structure
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A Structural Basis For Discrimination Between Sumo Paralogues During Processing Length = 225 Back     alignment and structure
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1 Structure Length = 230 Back     alignment and structure
>pdb|2IYC|A Chain A, Senp1 Native Structure Length = 226 Back     alignment and structure
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1 Length = 226 Back     alignment and structure
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex With Sumo-1 Length = 205 Back     alignment and structure
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap Length = 226 Back     alignment and structure
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2 Length = 232 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 2e-21
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 3e-17
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 2e-15
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 2e-14
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 5e-12
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238 Back     alignment and structure
 Score = 89.8 bits (222), Expect = 2e-21
 Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 16/192 (8%)

Query: 98  ITKRKKNKLDSGKF--EHLLD---NLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLT 152
           IT++    L+   +  + +++   N+    S++K     +  + +F    K +    V  
Sbjct: 46  ITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLKTAGYQAVKR 105

Query: 153 WIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEP 212
           W K+  +FS   +LVPI    HW L ++               +   DS+   N      
Sbjct: 106 WTKKVDVFSVDILLVPIHLGVHWCLAVVDFR---------KKNITYYDSMGGINNEACRI 156

Query: 213 DIRKFVMDIYKAEDRPETKELISR-IPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPEN 271
            + +++      + R E      +       ++PQQ NG +CG F   + +   +  P N
Sbjct: 157 -LLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPIN 215

Query: 272 FNLEDYPYFMEK 283
           F  +  PYF ++
Sbjct: 216 FTQQHMPYFRKR 227
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226 Back     alignment and structure
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Length = 323 Back     alignment and structure
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221 Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Length = 212 Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Length = 186 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query303
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 100.0
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 100.0
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 100.0
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 100.0
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 100.0
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 100.0
4ekf_A204 Adenain; alpha and beta protein (A+B), hydrolase; 95.14
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.9e-49  Score=370.86  Aligned_cols=212  Identities=22%  Similarity=0.423  Sum_probs=179.4

Q ss_pred             CCCCeeeecccccccCCCCCCCHHHHHHHHHHHHhh-hccccCCCeEEEechhhhhhcCCC---------------chHH
Q 022034           86 GKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRS-FSEDKKAGFTYLDSLWFDLYRKPS---------------SKAK  149 (303)
Q Consensus        86 ~~~~~~i~~~Dl~~L~~~~wLND~iI~~yl~~L~~~-~~~~~~~~~~~~~s~ff~~l~~~~---------------~~~~  149 (303)
                      ++.+++|+.+|+.+|.+++||||+|||||++||..+ .+++...++|+||||||.+|....               +|++
T Consensus        29 ~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~~~s~~~~~y~~  108 (323)
T 3eay_A           29 TKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKR  108 (323)
T ss_dssp             SSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSCHHHHHTEEECCTHHHHHHSCC--------CCSCHHHHHHTT
T ss_pred             CCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhccccccCcEEEEchHHHHHHHhcccccccccccchhHHHHHHH
Confidence            789999999999999999999999999999999643 333334679999999999987531               4789


Q ss_pred             HHHHHhhccccccceEEEeeecCCceeEEEEecCCCC--C---------------C------------------------
Q 022034          150 VLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGS--F---------------E------------------------  188 (303)
Q Consensus       150 v~~w~k~~~if~k~~I~iPIn~~~HW~L~Vi~~p~~~--~---------------~------------------------  188 (303)
                      |++|++++|||++|+||||||.+.||+|+|||+|+..  +               |                        
T Consensus       109 VrrWtrkvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  188 (323)
T 3eay_A          109 VRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAED  188 (323)
T ss_dssp             SGGGGTTCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC--------------------------------------
T ss_pred             HHHHHhhcccccCCEEEEecCCCCceEEEEEecCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999631  0               0                        


Q ss_pred             ------------CCCCCCeEEEeeCCCCCCCcchHHHHHHHHHHHHHhcCCCCcccccCCceeeCCCCCCCCCCCchHHH
Q 022034          189 ------------SKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNF  256 (303)
Q Consensus       189 ------------s~~~~~~i~~~DSl~~~~~~~l~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~vPqQ~N~~DCGvf  256 (303)
                                  ..++.+||+|||||++.....+...|++||..+|+.+.+....+....|+...+++|||.|++|||||
T Consensus       189 ~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~~~f~~~~~~~~~~~~P~Q~N~~DCGvf  268 (323)
T 3eay_A          189 SQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTHRQFSKTNMVDLCPKVPKQDNSSDCGVY  268 (323)
T ss_dssp             -----------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSCCCCCTTTSCEECCBCCCCCSTTCHHHH
T ss_pred             ccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhcCCCcCCCHhHceeccCCCCCcCCCCcHHHH
Confidence                        01356899999999997656677899999999998775444445556788788899999999999999


Q ss_pred             HHHHHHHHHcCCCCCcCCCCCcchhhcCCCCHHHHHHHHHHHhcC
Q 022034          257 VLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSS  301 (303)
Q Consensus       257 Vl~f~~~~~~~~~~~f~~~d~p~fr~~~Wf~~~~i~~~R~~l~~~  301 (303)
                      ||+||++|+.+++.+|++   |.. ..+||+|++|..+|++|.+|
T Consensus       269 vl~~~e~~~~~~~~~f~~---~~~-~~~wf~~~~i~~kR~ei~~L  309 (323)
T 3eay_A          269 LLQYVESFFKDPIVNFEL---PIH-LEKWFPRHVIKTKREDIREL  309 (323)
T ss_dssp             HHHHHHHHHHSCCCCCCS---SCB-CTTSSCHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHhCCcccccc---ccc-cccCCCHHHHHHHHHHHHHH
Confidence            999999999999999986   332 46899999999999999875
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Back     alignment and structure
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Back     alignment and structure
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 303
d2iy1a1225 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H 2e-23
d1th0a_226 d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H 9e-21
d1euva_221 d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake 7e-15
d2bkra1212 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SEN 1e-10
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.1 bits (233), Expect = 2e-23
 Identities = 38/201 (18%), Positives = 71/201 (35%), Gaps = 10/201 (4%)

Query: 83  LIKGKNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYR 142
           ++      ++  KD+ T    N L+       ++ L     E         ++ +F    
Sbjct: 25  VLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKL- 83

Query: 143 KPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSL 202
           K +    V  W K+  +FS   +LVPI    HW L ++           R   +   DS+
Sbjct: 84  KTAGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDF---------RKKNITYYDSM 134

Query: 203 EMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFIN 262
              N       ++    +    + +               ++PQQ NG + G F   + +
Sbjct: 135 GGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDAGMFACKYAD 194

Query: 263 LFVEGAPENFNLEDYPYFMEK 283
              +  P NF  +  PYF ++
Sbjct: 195 CITKDRPINFTQQHMPYFRKR 215
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226 Back     information, alignment and structure
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221 Back     information, alignment and structure
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 212 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query303
d1th0a_226 Sentrin-specific protease 2, SENP2 {Human (Homo sa 100.0
d1euva_221 Ulp1 protease C-terminal domain {Baker's yeast (Sa 100.0
d2iy1a1225 Sentrin-specific protease 1 {Human (Homo sapiens) 100.0
d2bkra1212 Sentrin-specific protease 8, SENP8 {Human (Homo sa 100.0
d1nlna_203 Human adenovirus 2 proteinase, adenain {Mastadenov 92.77
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-38  Score=280.57  Aligned_cols=184  Identities=18%  Similarity=0.353  Sum_probs=153.2

Q ss_pred             CCCeeeecccccccCCCCCCCHHHHHHHHHHHHhhhccccCCCeEEEechhhhhhcCCCchHHHHHHHhhccccccceEE
Q 022034           87 KNSSSVKCKDMITKRKKNKLDSGKFEHLLDNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVL  166 (303)
Q Consensus        87 ~~~~~i~~~Dl~~L~~~~wLND~iI~~yl~~L~~~~~~~~~~~~~~~~s~ff~~l~~~~~~~~v~~w~k~~~if~k~~I~  166 (303)
                      ..++.|+.+|+.+|.+++||||+|||||+++|.+...+....++++++|+|+..+. ..++..+.+|++..+++++++||
T Consensus        29 ~~~~~i~~~Dl~~L~~~~WLnD~iI~~y~~~l~~~~~~~~~~~~~~~~~~f~~~l~-~~~~~~~~~~~~~~~l~~~~~i~  107 (226)
T d1th0a_          29 AFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLK-SGGYQAVKRWTKGVNLFEQEIIL  107 (226)
T ss_dssp             ETTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHHTCCCEEECCTTHHHHHH-HHTGGGTGGGGTTCCGGGSSEEE
T ss_pred             cCCceeEHHHHHhcCCCcccccHHHHHHHHHHHHhhhhccCCceEEecHHHHHHHh-hccHHHHHHHHhccCcccCCEEE
Confidence            36899999999999999999999999999999876655555678899998887664 34688999999999999999999


Q ss_pred             EeeecCCceeEEEEecCCCCCCCCCCCCeEEEeeCCCCCCCcchHHHHHHHHHHHHHhcCCCCcccccCCce---eeCCC
Q 022034          167 VPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIP---LLVPK  243 (303)
Q Consensus       167 iPIn~~~HW~L~Vi~~p~~~~~s~~~~~~i~~~DSl~~~~~~~l~~~i~~~L~~~~~~~~~~~~~~~~~~~~---~~~~~  243 (303)
                      ||||.+.||+|+||+.+.         +++++|||++..+.. ....++.+|..+++........  ...|.   ..+..
T Consensus       108 iPin~~~HW~L~vi~~~~---------~~i~~~DSl~~~~~~-~~~~i~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~  175 (226)
T d1th0a_         108 VPIHRKVHWSLVVIDLRK---------KCLKYLDSMGQKGHR-ICEILLQYLQDESKTKRNSDLN--LLEWTHHSMKPHE  175 (226)
T ss_dssp             EEEEETTEEEEEEEETTT---------TEEEEECTTCCCCHH-HHHHHHHHHHHHHHHHTSCCCC--GGGCEEEECCTTT
T ss_pred             EeEEcCCceEEEEEEecc---------ceEEEeccccCCChH-HHHHHHHHHHHHHHHhhCCCcC--cccceeeeeccCC
Confidence            999999999999999643         799999999988764 4457888998877654332211  12222   45679


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHcCCCCCcCCCCCcchhhc
Q 022034          244 VPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEK  283 (303)
Q Consensus       244 vPqQ~N~~DCGvfVl~f~~~~~~~~~~~f~~~d~p~fr~~  283 (303)
                      +|||.||+|||+|||+||++++.+.+.+|++.||+.+|++
T Consensus       176 ~pqQ~N~~DCGvfvl~~~~~~~~~~~~~~tq~di~~~R~~  215 (226)
T d1th0a_         176 IPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKK  215 (226)
T ss_dssp             SCCCCSSSCHHHHHHHHHHHHTTTCCCCCCGGGHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHH
Confidence            9999999999999999999999999888999888888764
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]} Back     information, alignment and structure