BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>022035
MFEYLQTGSSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVK
FSEAIGELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTT
YLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSNQSTAEEER
ELLEGEWQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAK
SSTNTYNVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVHLRTDGS
NQK

High Scoring Gene Products

Symbol, full name Information P value
AT1G51110 protein from Arabidopsis thaliana 4.3e-109
AT4G22240 protein from Arabidopsis thaliana 2.9e-05
P80471
Light-induced protein, chloroplastic
protein from Solanum tuberosum 0.00077
FIB
AT4G04020
protein from Arabidopsis thaliana 0.00090

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  022035
        (303 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2026052 - symbol:AT1G51110 species:3702 "Arabi...  1078  4.3e-109  1
TAIR|locus:2132006 - symbol:AT4G22240 species:3702 "Arabi...    99  2.9e-05   2
UNIPROTKB|P80471 - symbol:P80471 "Light-induced protein, ...    97  0.00077   2
TAIR|locus:2136627 - symbol:FIB "fibrillin" species:3702 ...    89  0.00090   2


>TAIR|locus:2026052 [details] [associations]
            symbol:AT1G51110 species:3702 "Arabidopsis thaliana"
            [GO:0005198 "structural molecule activity" evidence=IEA;ISS]
            [GO:0009507 "chloroplast" evidence=ISM;IEA;IDA] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0016020
            "membrane" evidence=IDA] [GO:0009534 "chloroplast thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0010027
            "thylakoid membrane organization" evidence=RCA] InterPro:IPR006843
            Pfam:PF04755 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005198
            GO:GO:0009941 GO:GO:0009535 EMBL:AC079828 EMBL:AK118545
            EMBL:BT005347 EMBL:AY087688 IPI:IPI00538472 PIR:D96548 PIR:E96548
            RefSeq:NP_175522.2 UniGene:At.37891 STRING:Q8LAP6 PaxDb:Q8LAP6
            PRIDE:Q8LAP6 EnsemblPlants:AT1G51110.1 GeneID:841534
            KEGG:ath:AT1G51110 GeneFarm:2868 TAIR:At1g51110 eggNOG:NOG301249
            HOGENOM:HOG000005744 InParanoid:Q8LAP6 OMA:RISRGNK
            ProtClustDB:CLSN2680451 Genevestigator:Q8LAP6 Uniprot:Q8LAP6
        Length = 409

 Score = 1078 (384.5 bits), Expect = 4.3e-109, P = 4.3e-109
 Identities = 202/291 (69%), Positives = 245/291 (84%)

Query:     7 TGSSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLR-TNDPRVSNIVKFSEAI 65
             T S LIEGRW+LMFTTRPGTASPIQRTF GV+ F+VFQ++ L+ TNDPRVSNIVKFS+ I
Sbjct:   117 TDSDLIEGRWRLMFTTRPGTASPIQRTFTGVDVFTVFQDVYLKATNDPRVSNIVKFSDFI 176

Query:    66 GELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPS 125
             GELKVEA ASIKDGKR+LF+FD+AAF  KFLPFK PYPVPFRLLGDEAKGWLDTTYLSPS
Sbjct:   177 GELKVEAVASIKDGKRVLFRFDRAAFDLKFLPFKVPYPVPFRLLGDEAKGWLDTTYLSPS 236

Query:   126 GNLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSNQSTAXXXXXXXXX 185
             GNLRISRGNKGTTFVLQK+T PRQ LL+ IS    V +AI+EF++SN ++A         
Sbjct:   237 GNLRISRGNKGTTFVLQKETVPRQKLLATISQDKGVAEAIDEFLASNSNSAEDNYELLEG 296

Query:   186 XWQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNT 245
              WQM+WSSQM TDSWIENA NGLMG+QI++K+G++KFEV+I+  F+FSM G + KS ++T
Sbjct:   297 SWQMIWSSQMYTDSWIENAANGLMGRQIIEKDGRIKFEVNIIPAFRFSMKGKFIKSESST 356

Query:   246 YNVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVHLR 296
             Y++ MDDAAII G FGYP+ +   I L++LY+D+KMRISRG++NI+FVH+R
Sbjct:   357 YDLKMDDAAIIGGAFGYPVDITNNIELKILYTDEKMRISRGFDNIIFVHIR 407


>TAIR|locus:2132006 [details] [associations]
            symbol:AT4G22240 species:3702 "Arabidopsis thaliana"
            [GO:0005198 "structural molecule activity" evidence=IEA;ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IEA;IDA] [GO:0031977 "thylakoid lumen"
            evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0010287
            "plastoglobule" evidence=IDA] [GO:0009534 "chloroplast thylakoid"
            evidence=IDA] InterPro:IPR006843 Pfam:PF04755 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0005198 EMBL:AL161556 EMBL:AL021712
            GO:GO:0009535 GO:GO:0010287 GO:GO:0031977 eggNOG:NOG08027
            HOGENOM:HOG000030253 ProtClustDB:CLSN2719212 EMBL:AY074581
            EMBL:AY084549 EMBL:BT020429 EMBL:BT020480 IPI:IPI00536675
            PIR:T04905 RefSeq:NP_193955.1 UniGene:At.1973 IntAct:O49629
            STRING:O49629 PaxDb:O49629 PRIDE:O49629 ProMEX:O49629
            EnsemblPlants:AT4G22240.1 GeneID:828319 KEGG:ath:AT4G22240
            GeneFarm:2281 TAIR:At4g22240 InParanoid:O49629 OMA:AKLYNIA
            Genevestigator:O49629 GermOnline:AT4G22240 Uniprot:O49629
        Length = 310

 Score = 99 (39.9 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
 Identities = 22/45 (48%), Positives = 29/45 (64%)

Query:   103 PVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEP 147
             P+ F L  D A+ WL TTYL    ++RISRG+ G+ FVL K+  P
Sbjct:   264 PLKFSLPADNAQSWLLTTYLDK--DIRISRGDGGSVFVLIKEGSP 306

 Score = 65 (27.9 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
 Identities = 23/105 (21%), Positives = 45/105 (42%)

Query:    11 LIEGRWQLMFTTRPGTASPIQRTFVG-VETFSVFQEISLRTNDPRVSNIVKFSEAIG--E 67
             L+ G+W L +T+       + R  V  ++   + Q I   +++  V N V+F+  +G   
Sbjct:   133 LLNGKWILAYTSFVNLFPLLSRGIVPLIKVDEISQTID--SDNFTVQNSVRFAGPLGTNS 190

Query:    68 LKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDE 112
             +   A   I+  KR+  +F++       L      P    +LG +
Sbjct:   191 ISTNAKFEIRSPKRVQIKFEQGVIGTPQLTDSIEIPEYVEVLGQK 235


>UNIPROTKB|P80471 [details] [associations]
            symbol:P80471 "Light-induced protein, chloroplastic"
            species:4113 "Solanum tuberosum" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0006950 "response to stress" evidence=IEP]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            InterPro:IPR006843 Pfam:PF04755 GO:GO:0006950 GO:GO:0005198
            GO:GO:0009535 EMBL:Y15269 PIR:T07825 Uniprot:P80471
        Length = 326

 Score = 97 (39.2 bits), Expect = 0.00077, Sum P(2) = 0.00077
 Identities = 21/45 (46%), Positives = 28/45 (62%)

Query:   103 PVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEP 147
             P+ F +  + A+ WL TTYL     LRISRG+ G+ FVL K+  P
Sbjct:   280 PIKFPITNNNAQSWLLTTYLDDE--LRISRGDAGSVFVLIKEGSP 322

 Score = 54 (24.1 bits), Expect = 0.00077, Sum P(2) = 0.00077
 Identities = 25/108 (23%), Positives = 42/108 (38%)

Query:    10 SLIEGRWQLMFTTRPGTASPIQR---TFVGVETFSVFQEISLRTNDPRVSNIVKFSEAIG 66
             +L+ G+W L +T+  G    + R     V VE  S  Q I   +    V N V F+  + 
Sbjct:   148 TLLNGKWILAYTSFSGLFPLLSRGNLPLVRVEEIS--QTID--SESFTVQNSVVFAGPLA 203

Query:    67 ELKVEAAAS--IKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDE 112
                +   A   ++  KR+  +F++       L      P     LG +
Sbjct:   204 TTSISTNAKFEVRSPKRVQIKFEEGIIGTPQLTDSIVLPENVEFLGQK 251


>TAIR|locus:2136627 [details] [associations]
            symbol:FIB "fibrillin" species:3702 "Arabidopsis
            thaliana" [GO:0005198 "structural molecule activity"
            evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM;IEA;IDA]
            [GO:0031977 "thylakoid lumen" evidence=IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0010287 "plastoglobule"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0009737 "response to abscisic acid stimulus" evidence=IEP]
            [GO:0010205 "photoinhibition" evidence=IMP] [GO:0009409 "response
            to cold" evidence=IEP] [GO:0010319 "stromule" evidence=IDA]
            [GO:0009534 "chloroplast thylakoid" evidence=IDA]
            InterPro:IPR006843 Pfam:PF04755 GO:GO:0009737 GO:GO:0005634
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005198 GO:GO:0009409
            GO:GO:0010205 GO:GO:0009535 GO:GO:0010287 GO:GO:0031977
            GO:GO:0010319 EMBL:AF075598 EMBL:AL161499 EMBL:AY120766
            EMBL:BT000148 EMBL:AY085330 IPI:IPI00548131 PIR:T01472
            RefSeq:NP_192311.1 UniGene:At.27543 IntAct:O81439 STRING:O81439
            PaxDb:O81439 PRIDE:O81439 ProMEX:O81439 EnsemblPlants:AT4G04020.1
            GeneID:825714 KEGG:ath:AT4G04020 GeneFarm:2632 TAIR:At4g04020
            eggNOG:NOG08027 HOGENOM:HOG000030253 InParanoid:O81439 OMA:NRRSEIG
            ProtClustDB:CLSN2719212 Genevestigator:O81439 GermOnline:AT4G04020
            Uniprot:O81439
        Length = 318

 Score = 89 (36.4 bits), Expect = 0.00090, Sum P(2) = 0.00090
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query:   103 PVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKK 144
             P+ F L  D  + WL TTYL    +LRISRG+ G+ +VL K+
Sbjct:   272 PLKFSLPSDNTQSWLLTTYLDK--DLRISRGDGGSVYVLIKE 311

 Score = 62 (26.9 bits), Expect = 0.00090, Sum P(2) = 0.00090
 Identities = 24/106 (22%), Positives = 42/106 (39%)

Query:    11 LIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEIS--LRTNDPRVSNIVKFSEAIG-- 66
             L+ G+W L +T+  G    + R    +E      EIS  + ++   V N V+F+      
Sbjct:   141 LLNGKWILAYTSFVGLFPLLSRR---IEPLVKVDEISQTIDSDSFTVQNSVRFAGPFSTT 197

Query:    67 ELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDE 112
                  A   I+  KR+  +F++       L      P    +LG +
Sbjct:   198 SFSTNAKFEIRSPKRVQIKFEQGVIGTPQLTDSIEIPESVEVLGQK 243


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      303       293   0.00091  115 3  11 22  0.38    34
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  198 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.46u 0.22s 20.68t   Elapsed:  00:00:01
  Total cpu time:  20.46u 0.22s 20.68t   Elapsed:  00:00:01
  Start:  Sat May 11 02:24:50 2013   End:  Sat May 11 02:24:51 2013

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