BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022035
(303 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LAP6|PAP12_ARATH Probable plastid-lipid-associated protein 12, chloroplastic
OS=Arabidopsis thaliana GN=PAP12 PE=2 SV=1
Length = 409
Score = 450 bits (1158), Expect = e-126, Method: Compositional matrix adjust.
Identities = 208/291 (71%), Positives = 252/291 (86%), Gaps = 1/291 (0%)
Query: 7 TGSSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLR-TNDPRVSNIVKFSEAI 65
T S LIEGRW+LMFTTRPGTASPIQRTF GV+ F+VFQ++ L+ TNDPRVSNIVKFS+ I
Sbjct: 117 TDSDLIEGRWRLMFTTRPGTASPIQRTFTGVDVFTVFQDVYLKATNDPRVSNIVKFSDFI 176
Query: 66 GELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPS 125
GELKVEA ASIKDGKR+LF+FD+AAF KFLPFK PYPVPFRLLGDEAKGWLDTTYLSPS
Sbjct: 177 GELKVEAVASIKDGKRVLFRFDRAAFDLKFLPFKVPYPVPFRLLGDEAKGWLDTTYLSPS 236
Query: 126 GNLRISRGNKGTTFVLQKKTEPRQTLLSAISTGTQVEQAINEFISSNQSTAEEERELLEG 185
GNLRISRGNKGTTFVLQK+T PRQ LL+ IS V +AI+EF++SN ++AE+ ELLEG
Sbjct: 237 GNLRISRGNKGTTFVLQKETVPRQKLLATISQDKGVAEAIDEFLASNSNSAEDNYELLEG 296
Query: 186 EWQMLWSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNT 245
WQM+WSSQM TDSWIENA NGLMG+QI++K+G++KFEV+I+ F+FSM G + KS ++T
Sbjct: 297 SWQMIWSSQMYTDSWIENAANGLMGRQIIEKDGRIKFEVNIIPAFRFSMKGKFIKSESST 356
Query: 246 YNVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILFVHLR 296
Y++ MDDAAII G FGYP+ + I L++LY+D+KMRISRG++NI+FVH+R
Sbjct: 357 YDLKMDDAAIIGGAFGYPVDITNNIELKILYTDEKMRISRGFDNIIFVHIR 407
>sp|Q94KU6|PAP2_BRACM Plastid lipid-associated protein 2, chloroplastic OS=Brassica
campestris GN=PAP2 PE=1 SV=1
Length = 319
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 103 PVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEP 147
P+ F L GD A+ WL TTYL ++RISRG+ G+ FVL K+ P
Sbjct: 273 PLKFSLPGDSAQSWLLTTYL--DKDIRISRGDGGSVFVLIKEGSP 315
>sp|O49629|PAP2_ARATH Probable plastid-lipid-associated protein 2, chloroplastic
OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1
Length = 310
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 103 PVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEP 147
P+ F L D A+ WL TTYL ++RISRG+ G+ FVL K+ P
Sbjct: 264 PLKFSLPADNAQSWLLTTYL--DKDIRISRGDGGSVFVLIKEGSP 306
>sp|Q94FZ9|PAP1_BRACM Plastid lipid-associated protein 1, chloroplastic OS=Brassica
campestris GN=PAP1 PE=1 SV=1
Length = 327
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 103 PVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKK 144
P+ F L GD A+ WL TTYL +LRISRG+ G+ FVL ++
Sbjct: 281 PLKFSLPGDSAQSWLLTTYL--DKDLRISRGDGGSVFVLIRE 320
>sp|P80471|LIPC_SOLTU Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2
Length = 326
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 103 PVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEP 147
P+ F + + A+ WL TTYL LRISRG+ G+ FVL K+ P
Sbjct: 280 PIKFPITNNNAQSWLLTTYLD--DELRISRGDAGSVFVLIKEGSP 322
>sp|O99019|LIPC_SOLDE Light-induced protein, chloroplastic OS=Solanum demissum PE=1 SV=1
Length = 326
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 103 PVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEP 147
P+ F + + A+ WL TTYL LRI RG+ G+ FVL K+ P
Sbjct: 280 PIKFPITNNNAQSWLLTTYL--DDELRIPRGDAGSVFVLIKEGSP 322
>sp|O81439|PAP1_ARATH Probable plastid-lipid-associated protein 1, chloroplastic
OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1
Length = 318
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 103 PVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKK 144
P+ F L D + WL TTYL +LRISRG+ G+ +VL K+
Sbjct: 272 PLKFSLPSDNTQSWLLTTYL--DKDLRISRGDGGSVYVLIKE 311
>sp|Q9LU85|PAP4_ARATH Probable plastid-lipid-associated protein 4, chloroplastic
OS=Arabidopsis thaliana GN=PAP4 PE=1 SV=1
Length = 242
Score = 38.9 bits (89), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 25/137 (18%)
Query: 9 SSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVK---FSEAI 65
S L+ G+W+L++TT + F+ + + +Q I++ T +V N+ ++
Sbjct: 118 SDLVNGKWELIYTTSASILQAKKPRFL--RSITNYQSINVDTL--KVQNMETWPFYNSVT 173
Query: 66 GELKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPS 125
G++K + + + Q K F+P K P D A+G L+ TY+
Sbjct: 174 GDIKPLNSKKVA----VKLQVFKI---LGFIPIKAP---------DSARGELEITYVD-- 215
Query: 126 GNLRISRGNKGTTFVLQ 142
LR+SRG+KG F+L+
Sbjct: 216 EELRLSRGDKGNLFILK 232
>sp|Q96398|CHRC_CUCSA Chromoplast-specific carotenoid-associated protein, chromoplast
OS=Cucumis sativus GN=CHRC PE=1 SV=1
Length = 322
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 66/175 (37%), Gaps = 44/175 (25%)
Query: 10 SLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVKFSEAIGELK 69
+L+ G+W L +TT G + R V+ + Q I + + V N V+FS +
Sbjct: 145 TLLNGKWILAYTTFAGLFPLLSRNLPLVKVEEISQTID--SENLTVQNSVQFSGPLATTS 202
Query: 70 VEAAA--SIKDGKRILFQFDKAAF--------------------SFKFLPFK-------- 99
+ A ++ R+ +F++ F PF
Sbjct: 203 ITTNAKFEVRSPLRVHIKFEEGVIGTPQLTDSIVIPDNVDFLGQKIDFTPFNGIISSLQD 262
Query: 100 ----------FPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKK 144
P+ F + + WL TTYL +LRISRG+ G+ FVL K+
Sbjct: 263 TASNVAKTISSQPPIKFSISNTRVESWLLTTYLD--EDLRISRGDGGSVFVLLKE 315
>sp|Q9ZWQ8|PAP_CITUN Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu
GN=PAP PE=2 SV=1
Length = 323
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 103 PVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEP 147
P+ F + A+ WL TTYL +LRISR + G+ FV K+ P
Sbjct: 277 PLKFSISNSNAQSWLLTTYL--DEDLRISRADAGSVFVFIKEGSP 319
>sp|Q6K439|PAP2_ORYSJ Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=PAP2 PE=2 SV=1
Length = 319
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 68/181 (37%), Gaps = 54/181 (29%)
Query: 10 SLIEGRWQLMFTTR----PGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVKFSEAI 65
+L+ G+W L +T+ P S V VE S ++ + + V N +KFS +
Sbjct: 141 TLLNGKWILAYTSFSQLFPLLGSGSLPQLVKVEEISQ----TIDSENFTVQNCIKFSGPL 196
Query: 66 GELKVEAAA--SIKDGKRILFQFDKAAFSFK------FLPFKF----------------- 100
V A ++ KR+ +FD+ LP KF
Sbjct: 197 ATTSVSTNAKFEVRSPKRVQIKFDEGIIGTPQLTDSIVLPEKFELFGQNIDLTPLKGIFS 256
Query: 101 -----------------PYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQK 143
P +P R D A+ WL TTYL LRISRG+ + FVL K
Sbjct: 257 SIENAASSVARTISGQPPLKIPIRT--DNAESWLLTTYL--DDELRISRGDGSSIFVLFK 312
Query: 144 K 144
+
Sbjct: 313 E 313
>sp|O82291|PAP3_ARATH Probable plastid-lipid-associated protein 3, chloroplastic
OS=Arabidopsis thaliana GN=PAP3 PE=1 SV=1
Length = 376
Score = 35.4 bits (80), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 9/48 (18%)
Query: 97 PFKFPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKK 144
P K P+P G+ WL TTYL +LRISRG+ G FVL ++
Sbjct: 331 PLKLPFP------GNRGSSWLLTTYL--DKDLRISRGDGG-LFVLARE 369
>sp|Q4AAR2|KCY_MYCHJ Cytidylate kinase OS=Mycoplasma hyopneumoniae (strain J / ATCC
25934 / NCTC 10110) GN=cmk PE=3 SV=1
Length = 229
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 27/153 (17%)
Query: 155 ISTGTQVEQAINEFISSNQSTAEEERELLEGEWQMLWSSQMETDSWIENAG-NGLMGKQI 213
I+TG+ + +AI F NQ + ER++++ S E + W++N + L+ +
Sbjct: 34 INTGS-LYRAIAFFCQKNQISITSERKMIKHLPPNFLSLDFEGNVWLQNQNVSNLLRNDL 92
Query: 214 VKKNGQM--------KFEVDILLGFKFSMTGTYAKSSTNTYNVTMDDAAIICGGFGYPIK 265
+ KN + K +IL F+ + G + TYNV M DA
Sbjct: 93 ISKNAAIIAQYPQIRKIVTEILQNFQKNHKGIIMEGRDTTYNV-MPDA------------ 139
Query: 266 METKINLQLLYSDDKMRISRGYNNILFVHLRTD 298
+ KI L++D + R R F++L TD
Sbjct: 140 -DLKI---FLWADAETRAKRRLKQNTFLNLETD 168
>sp|Q4A8U3|KCY_MYCH7 Cytidylate kinase OS=Mycoplasma hyopneumoniae (strain 7448) GN=cmk
PE=3 SV=1
Length = 229
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 27/153 (17%)
Query: 155 ISTGTQVEQAINEFISSNQSTAEEERELLEGEWQMLWSSQMETDSWIENAG-NGLMGKQI 213
I+TG+ + +AI F NQ + ER++++ S E + W++N + L+ +
Sbjct: 34 INTGS-LYRAIAFFCQKNQISITSERKMIKHLPPNFLSLDFEGNVWLQNQNVSNLLRNDL 92
Query: 214 VKKNGQM--------KFEVDILLGFKFSMTGTYAKSSTNTYNVTMDDAAIICGGFGYPIK 265
+ KN + K +IL F+ + G + TYNV M DA
Sbjct: 93 ISKNAAIIAQYPQIRKIVTEILQNFQKNHKGIIMEGRDTTYNV-MPDA------------ 139
Query: 266 METKINLQLLYSDDKMRISRGYNNILFVHLRTD 298
+ KI L++D + R R F++L TD
Sbjct: 140 -DLKI---FLWADAETRAKRRLKQNTFLNLETD 168
>sp|Q601X7|KCY_MYCH2 Cytidylate kinase OS=Mycoplasma hyopneumoniae (strain 232) GN=cmk
PE=3 SV=1
Length = 229
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 27/153 (17%)
Query: 155 ISTGTQVEQAINEFISSNQSTAEEERELLEGEWQMLWSSQMETDSWIENAG-NGLMGKQI 213
I+TG+ + +AI F NQ + ER++++ S E + W++N + L+ +
Sbjct: 34 INTGS-LYRAIAFFCQKNQISITSERKMIKHLPPNFLSLDFEGNVWLQNQNVSNLLRNDL 92
Query: 214 VKKNGQM--------KFEVDILLGFKFSMTGTYAKSSTNTYNVTMDDAAIICGGFGYPIK 265
+ KN + K +IL F+ + G + TYNV M DA
Sbjct: 93 ISKNAAIIAQYPQIRKIVTEILQSFQKNHKGIIMEGRDTTYNV-MPDA------------ 139
Query: 266 METKINLQLLYSDDKMRISRGYNNILFVHLRTD 298
+ KI L++D + R R F++L TD
Sbjct: 140 -DLKI---FLWADAETRAKRRLKQNTFLNLETD 168
>sp|Q94KU5|PAP3_BRACM Plastid lipid-associated protein 3, chloroplastic OS=Brassica
campestris GN=PAP3 PE=2 SV=1
Length = 360
Score = 35.0 bits (79), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 9/48 (18%)
Query: 97 PFKFPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKK 144
P K P+P G+ WL TTYL +LRISRG+ G FVL ++
Sbjct: 315 PLKLPFP------GNRGSSWLLTTYL--DKDLRISRGDGG-LFVLARE 353
>sp|Q6DBN2|PAP5_ARATH Probable plastid-lipid-associated protein 5, chloroplastic
OS=Arabidopsis thaliana GN=PAP5 PE=2 SV=1
Length = 234
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 16/141 (11%)
Query: 161 VEQAINEFISSNQSTAEEERELLEGEWQMLWSSQMETDSWIENAGN-----GLMGKQIVK 215
++Q + + N + + +L+ G+W+++++ T + I A L Q +
Sbjct: 90 IDQLARKVEAVNPTKEPLKSDLINGKWELIYT----TSAAILQAKKPRFLRSLTNYQCIN 145
Query: 216 KNGQMKFEVDILLGFKFSMTGTYAKSSTNTYNVTMDDAAIICGGFGYPIKME---TKINL 272
+ +K + F S+TG ++ T V + I+ GF P+K + L
Sbjct: 146 MD-TLKVQRMETWPFYNSVTGDLTPLNSKTVAVKLQVFKIL--GF-IPVKAPDGTARGEL 201
Query: 273 QLLYSDDKMRISRGYNNILFV 293
++ Y D+++RISRG N+LF+
Sbjct: 202 EITYVDEELRISRGKGNLLFI 222
Score = 31.2 bits (69), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 20/135 (14%)
Query: 9 SSLIEGRWQLMFTTRPGTASPIQRTFVGVETFSVFQEISLRT-NDPRVSNIVKFSEAIGE 67
S LI G+W+L++TT + F + + + +Q I++ T R+ ++ G+
Sbjct: 109 SDLINGKWELIYTTSAAILQAKKPRF--LRSLTNYQCINMDTLKVQRMETWPFYNSVTGD 166
Query: 68 LKVEAAASIKDGKRILFQFDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPSGN 127
L + ++ ++ FK L F +P + A+G L+ TY+
Sbjct: 167 LTPLNSKTVAVKLQV----------FKILGF-----IPVKAPDGTARGELEITYV--DEE 209
Query: 128 LRISRGNKGTTFVLQ 142
LRISRG F+L+
Sbjct: 210 LRISRGKGNLLFILK 224
>sp|Q9ZP40|PG1_PEA Plastoglobulin-1, chloroplastic OS=Pisum sativum GN=PG1 PE=1 SV=1
Length = 358
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 9/48 (18%)
Query: 97 PFKFPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKK 144
P K P P G+ WL TTYL +LRISRG+ G FVL ++
Sbjct: 313 PLKIPIP------GERTSSWLITTYL--DKDLRISRGDGG-LFVLARE 351
>sp|Q941D3|PAP8_ARATH Probable plastid-lipid-associated protein 8, chloroplastic
OS=Arabidopsis thaliana GN=PAP8 PE=2 SV=1
Length = 239
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 233 SMTGTYAKSSTNTYNVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMRISRGYNNILF 292
S+TG + V + I G + E+++ L++ Y D+K+R+ G LF
Sbjct: 174 SLTGKLKALDSEWVQVIFEPPEIKVGSLEFKYGFESEVKLRITYVDEKLRLGLGSKGSLF 233
Query: 293 VHLR 296
V R
Sbjct: 234 VFRR 237
>sp|P73625|MUTS2_SYNY3 MutS2 protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=mutSB PE=3 SV=1
Length = 822
Score = 31.6 bits (70), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 149 QTLLSAISTGTQVEQAINEFISSNQSTAE-------EERELLEGEWQMLWSSQMETDSWI 201
QTL++ + T ++EQAI+ + + AE E R+ L+ + + Q + I
Sbjct: 125 QTLVAEVRTLPELEQAIHHCLGEDGKVAERASPKLGEIRQKLKAVREQI---QQKLQKII 181
Query: 202 ENAGNGLMGKQIVKKNGQMKFEVDILLGFKFSMTGTYAKSSTNTYNVTMDDAAII 256
+ N L I ++ +F + I G+K M G SS + + ++ AI+
Sbjct: 182 QRQSNALQEAVITQRGD--RFVLPIKAGYKEQMPGIVHDSSASGNTLYVEPQAIV 234
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,129,301
Number of Sequences: 539616
Number of extensions: 4338904
Number of successful extensions: 10422
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 10395
Number of HSP's gapped (non-prelim): 38
length of query: 303
length of database: 191,569,459
effective HSP length: 117
effective length of query: 186
effective length of database: 128,434,387
effective search space: 23888795982
effective search space used: 23888795982
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)