Query 022035
Match_columns 303
No_of_seqs 224 out of 499
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:31:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04755 PAP_fibrillin: PAP_fi 100.0 1.1E-33 2.4E-38 250.7 17.5 150 146-295 2-198 (198)
2 PF04755 PAP_fibrillin: PAP_fi 100.0 2E-28 4.3E-33 217.1 17.1 136 3-142 37-198 (198)
3 PF08212 Lipocalin_2: Lipocali 68.6 68 0.0015 26.7 10.5 37 113-151 81-120 (143)
4 COG3040 Blc Bacterial lipocali 57.0 41 0.00089 29.8 6.6 33 270-302 111-146 (174)
5 COG3040 Blc Bacterial lipocali 54.7 68 0.0015 28.4 7.5 37 115-153 111-150 (174)
6 PF14869 DUF4488: Domain of un 50.0 1.2E+02 0.0026 25.8 8.0 68 11-88 2-71 (133)
7 PF08212 Lipocalin_2: Lipocali 40.7 2.1E+02 0.0045 23.7 10.0 34 268-301 81-117 (143)
8 PF13596 PAS_10: PAS domain; P 38.1 37 0.0008 26.1 3.1 71 117-190 10-83 (106)
9 cd06407 PB1_NLP A PB1 domain i 37.6 68 0.0015 24.7 4.4 10 115-124 39-48 (82)
10 TIGR03422 mito_frataxin fratax 34.9 51 0.0011 26.3 3.4 24 135-158 44-68 (97)
11 PF07070 Spo0M: SpoOM protein; 33.4 3.8E+02 0.0083 24.5 10.9 71 53-124 28-117 (218)
12 PF14869 DUF4488: Domain of un 32.7 3.1E+02 0.0068 23.3 9.9 59 183-245 3-64 (133)
13 cd06397 PB1_UP1 Uncharacterize 21.6 72 0.0016 24.9 2.0 9 117-125 40-48 (82)
14 TIGR02334 prpF probable AcnD-a 20.6 3.9E+02 0.0085 26.7 7.4 42 127-168 203-247 (390)
No 1
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=100.00 E-value=1.1e-33 Score=250.68 Aligned_cols=150 Identities=24% Similarity=0.362 Sum_probs=124.7
Q ss_pred chhhhhhhcccCc-----------hHHHHHHHHHHhcCCCCccccc-cCccceEEEEEeeccCcchhhhhhc-CCCC---
Q 022035 146 EPRQTLLSAISTG-----------TQVEQAINEFISSNQSTAEEER-ELLEGEWQMLWSSQMETDSWIENAG-NGLM--- 209 (303)
Q Consensus 146 ~~~~~ll~ai~~~-----------~~i~~~i~~Le~~np~~~p~~~-~lL~G~W~L~yts~~e~~~~l~~~~-~gl~--- 209 (303)
++|++||++++.. ++|+++|++||++||++.|.++ ++|+|+|+|+|||+.+..+.++... ++..
T Consensus 2 ~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~~~~~~ 81 (198)
T PF04755_consen 2 DLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPGVRVGR 81 (198)
T ss_pred hHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCccccccccccccccccc
Confidence 6899999999983 3799999999999999999876 9999999999999998877665322 2222
Q ss_pred CeeEEc-cCCcEEEEEEecC-C---eEEEEEEEEEEeCCcEEEEEEeecEEEe-------------------------Cc
Q 022035 210 GKQIVK-KNGQMKFEVDILL-G---FKFSMTGTYAKSSTNTYNVTMDDAAIIC-------------------------GG 259 (303)
Q Consensus 210 ~~Q~id-~~~~~~N~v~~~~-~---~~~~v~a~~e~~~~~rv~V~F~~~~l~~-------------------------~~ 259 (303)
.||+|| +++++.|+|++.+ + +.+.+.|++++.+++|+.|+|+++.+.. .+
T Consensus 82 v~Q~id~~~~~~~N~v~~~~~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~l~~~l~~~~~~~~~v~~~~~~~~~ 161 (198)
T PF04755_consen 82 VFQTIDADNGRVENVVELSGFPLLEGSVSVRASLEVRSPRRVEVTFERASLKPPSLLKGVLGPLKDALNNVPRGISDELP 161 (198)
T ss_pred eEEEEECCCceEEEEEEEeccCceEEEEEEEEEEEEccccEEEEEEEeeEEcccceeeccchhhhhhhhhcccccccccc
Confidence 499999 8899999999753 2 5678999999999999999999998843 12
Q ss_pred eeecCC-CCceeEEEEEEeeCceeEEeCCCCcEEEEE
Q 022035 260 FGYPIK-METKINLQLLYSDDKMRISRGYNNILFVHL 295 (303)
Q Consensus 260 ~~~p~~-~~~~gwlditYLDe~lRI~RG~~G~~FVl~ 295 (303)
++++++ ..++||||||||||+|||+||++|++|||.
T Consensus 162 ~~~~~~~~~~~g~l~~tYLDedlRI~Rg~~G~~fVl~ 198 (198)
T PF04755_consen 162 VPLPLPGGSPKGWLDTTYLDEDLRISRGNKGSLFVLK 198 (198)
T ss_pred cccccCCCCCceEEEEEEECCCeEEEEcCCCCEEEeC
Confidence 223333 357999999999999999999999999983
No 2
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=99.96 E-value=2e-28 Score=217.07 Aligned_cols=136 Identities=42% Similarity=0.702 Sum_probs=111.4
Q ss_pred ccCCCC----C-CCCceEEEEEeeCCCCCCCcccc-cccCceecceEEEEEeeCCCCeEEEEEEEec---cceEEEEEEE
Q 022035 3 EYLQTG----S-SLIEGRWQLMFTTRPGTASPIQR-TFVGVETFSVFQEISLRTNDPRVSNIVKFSE---AIGELKVEAA 73 (303)
Q Consensus 3 ~~nPt~----~-~lL~G~W~L~yTt~~~~~~~~~~-~~~g~~~~~i~Q~I~~~~~~g~v~N~v~f~~---~~g~l~V~a~ 73 (303)
++||++ + ++|+|+|+|+|||++++.++++. ..+++..++|||+|| .+++++.|+|+|.. ..|.+.+.|+
T Consensus 37 ~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~~~~~~v~Q~id--~~~~~~~N~v~~~~~~~~~~~~~v~a~ 114 (198)
T PF04755_consen 37 ALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPGVRVGRVFQTID--ADNGRVENVVELSGFPLLEGSVSVRAS 114 (198)
T ss_pred HhCCCCCCcCCchhcCcEEEEEeecCCCccccccccccccccccceEEEEE--CCCceEEEEEEEeccCceEEEEEEEEE
Confidence 467766 3 78999999999999998877654 466788999999994 47789999999765 3578999999
Q ss_pred EEEcCCCEEEEEEEEeEEeeccc-----------------ccccCCCcccccCCCCcceEEEEEEecCCCceEEEeCCCC
Q 022035 74 ASIKDGKRILFQFDKAAFSFKFL-----------------PFKFPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKG 136 (303)
Q Consensus 74 ~~~~~~~rv~v~F~~~~v~~~~~-----------------~~~~P~p~~~~l~~~~~~Gwld~TYLD~~~dlRI~RG~~G 136 (303)
+++.+++|+.++|+++.+.++.+ .....+|.++++.+..++||+||||||+ ||||+||++|
T Consensus 115 ~~~~~~~rv~v~f~~~~l~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~l~~tYLDe--dlRI~Rg~~G 192 (198)
T PF04755_consen 115 LEVRSPRRVEVTFERASLKPPSLLKGVLGPLKDALNNVPRGISDELPVPLPLPGGSPKGWLDTTYLDE--DLRISRGNKG 192 (198)
T ss_pred EEEccccEEEEEEEeeEEcccceeeccchhhhhhhhhcccccccccccccccCCCCCceEEEEEEECC--CeEEEEcCCC
Confidence 99999999999999999865211 1122345556666678999999999999 9999999999
Q ss_pred cEEEEe
Q 022035 137 TTFVLQ 142 (303)
Q Consensus 137 ~vFVl~ 142 (303)
++|||.
T Consensus 193 ~~fVl~ 198 (198)
T PF04755_consen 193 SLFVLK 198 (198)
T ss_pred CEEEeC
Confidence 999984
No 3
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=68.64 E-value=68 Score=26.68 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=28.7
Q ss_pred cceEEEEEEecCCCc---eEEEeCCCCcEEEEeecCchhhhh
Q 022035 113 AKGWLDTTYLSPSGN---LRISRGNKGTTFVLQKKTEPRQTL 151 (303)
Q Consensus 113 ~~Gwld~TYLD~~~d---lRI~RG~~G~vFVl~R~~~~~~~l 151 (303)
+.|-+.+.|+|. + .=++-.++-.++||.|...+.++.
T Consensus 81 ~~~~YwVl~~D~--dY~~~iv~~~~~~~~WILsR~p~~~~~~ 120 (143)
T PF08212_consen 81 PKGNYWVLYTDY--DYSWAIVGSPDREYLWILSRTPQLSEET 120 (143)
T ss_dssp EEEEEEEEEEBT--TSSEEEEEECCCCEEEEEESSSS--HHH
T ss_pred CCcceEEEEEcC--CccEEEEecCCCCEEEEEeCCCCCCHHH
Confidence 567788999998 6 556777899999999998876654
No 4
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=57.02 E-value=41 Score=29.77 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=28.3
Q ss_pred eEEEEEEeeCcee---EEeCCCCcEEEEEecCCCCC
Q 022035 270 INLQLLYSDDKMR---ISRGYNNILFVHLRTDGSNQ 302 (303)
Q Consensus 270 gwlditYLDe~lR---I~RG~~G~~FVl~R~~~~~~ 302 (303)
|=-.++|+|++=+ ++-.|+-.+|+|.|..+..|
T Consensus 111 g~Y~Vl~~d~eYs~aiVgsPdr~ylWlLsRtP~~s~ 146 (174)
T COG3040 111 GDYWVLALDPEYSWAIVGSPDREYLWLLSRTPTLSQ 146 (174)
T ss_pred ccEEEEEECCCccEEEEeCCCcceEEEEecCCCCCH
Confidence 6678999999988 57789999999999986655
No 5
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=54.68 E-value=68 Score=28.43 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=28.8
Q ss_pred eEEEEEEecCCCceEE---EeCCCCcEEEEeecCchhhhhhh
Q 022035 115 GWLDTTYLSPSGNLRI---SRGNKGTTFVLQKKTEPRQTLLS 153 (303)
Q Consensus 115 Gwld~TYLD~~~dlRI---~RG~~G~vFVl~R~~~~~~~ll~ 153 (303)
|-+.++|+|+ |-+. +-.|+-.+|++.|...+.++.+.
T Consensus 111 g~Y~Vl~~d~--eYs~aiVgsPdr~ylWlLsRtP~~s~~~~~ 150 (174)
T COG3040 111 GDYWVLALDP--EYSWAIVGSPDREYLWLLSRTPTLSQETLK 150 (174)
T ss_pred ccEEEEEECC--CccEEEEeCCCcceEEEEecCCCCCHHHHH
Confidence 7788999999 6554 34589999999999877655544
No 6
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=49.97 E-value=1.2e+02 Score=25.83 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=43.1
Q ss_pred CCceEEEEE-eeCCCCCCCcccccccC-ceecceEEEEEeeCCCCeEEEEEEEeccceEEEEEEEEEEcCCCEEEEEEEE
Q 022035 11 LIEGRWQLM-FTTRPGTASPIQRTFVG-VETFSVFQEISLRTNDPRVSNIVKFSEAIGELKVEAAASIKDGKRILFQFDK 88 (303)
Q Consensus 11 lL~G~W~L~-yTt~~~~~~~~~~~~~g-~~~~~i~Q~I~~~~~~g~v~N~v~f~~~~g~l~V~a~~~~~~~~rv~v~F~~ 88 (303)
-|.|-|+|+ |-+.... .+| +..++++..+ +++|++.|+.-+......+...++|+..++....=.-++
T Consensus 2 ~l~GVWQ~c~~~~~~~~-------~~g~l~~~~~lKil---S~Dgtf~Ni~~~~~~~aiIt~~GtY~~~sD~~Y~E~IeK 71 (133)
T PF14869_consen 2 SLQGVWQLCHYVSESPE-------VPGKLKPSNVLKIL---SDDGTFVNITMIPKSGAIITGYGTYEQPSDNIYVESIEK 71 (133)
T ss_pred CceEEEEEEEEeecCcc-------cCceEeecccEEEE---cCCCcEEEEEEeCCCCcEEEEeEEEEEcCCccceeeecc
Confidence 378999999 5444221 222 2334455555 366899999887665566777788888887744444444
No 7
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=40.71 E-value=2.1e+02 Score=23.67 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=26.1
Q ss_pred ceeEEEEEEeeCc---eeEEeCCCCcEEEEEecCCCC
Q 022035 268 TKINLQLLYSDDK---MRISRGYNNILFVHLRTDGSN 301 (303)
Q Consensus 268 ~~gwlditYLDe~---lRI~RG~~G~~FVl~R~~~~~ 301 (303)
..|=-.|+|+|.+ .=+|-.++-.+|||.|...+.
T Consensus 81 ~~~~YwVl~~D~dY~~~iv~~~~~~~~WILsR~p~~~ 117 (143)
T PF08212_consen 81 PKGNYWVLYTDYDYSWAIVGSPDREYLWILSRTPQLS 117 (143)
T ss_dssp EEEEEEEEEEBTTSSEEEEEECCCCEEEEEESSSS--
T ss_pred CCcceEEEEEcCCccEEEEecCCCCEEEEEeCCCCCC
Confidence 4567788999987 336778999999999987653
No 8
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=38.14 E-value=37 Score=26.14 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=40.5
Q ss_pred EEEEEecCCCceEEEeCCCCcEEEEeecCchhhhhhhcccCch---HHHHHHHHHHhcCCCCccccccCccceEEEE
Q 022035 117 LDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAISTGT---QVEQAINEFISSNQSTAEEERELLEGEWQML 190 (303)
Q Consensus 117 ld~TYLD~~~dlRI~RG~~G~vFVl~R~~~~~~~ll~ai~~~~---~i~~~i~~Le~~np~~~p~~~~lL~G~W~L~ 190 (303)
..++|+|. ++||-|=+...-=+|.+......+-+..|.+.. .+.+.++++..-+........+ -+|.|-++
T Consensus 10 ~~i~~vD~--~~~I~~~n~~a~~~f~~~~~~iGr~l~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~-~~~~~~~~ 83 (106)
T PF13596_consen 10 IGIIFVDR--NLRIRYFNPAAARLFNLSPSDIGRPLFDIHPPLSYPNLKKIIEQVRSGKEEEFEIVIP-NGGRWYLV 83 (106)
T ss_dssp SEEEEEET--TSBEEEE-SCGC-SS---GGGTTSBCCCSS-HHHHHHHHHHHHHHHTTSBSEEEEEEE-ETTEEEEE
T ss_pred CCEEEEcC--CCeEEEeChhHhhhcCCChHHCCCCHHHcCCccchHHHHHHHHHHHcCCCceEEEEec-CCCEEEEE
Confidence 36899999 999999887766556566555666677776644 4566666666554422221122 55666444
No 9
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=37.61 E-value=68 Score=24.70 Aligned_cols=10 Identities=30% Similarity=0.464 Sum_probs=9.3
Q ss_pred eEEEEEEecC
Q 022035 115 GWLDTTYLSP 124 (303)
Q Consensus 115 Gwld~TYLD~ 124 (303)
+-+.+.|+|+
T Consensus 39 ~~f~LkY~Dd 48 (82)
T cd06407 39 SAFDLKYLDD 48 (82)
T ss_pred CeeEEEEECC
Confidence 7899999999
No 10
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=34.88 E-value=51 Score=26.34 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.0
Q ss_pred CCcEEEEeecCchhhhhhhc-ccCc
Q 022035 135 KGTTFVLQKKTEPRQTLLSA-ISTG 158 (303)
Q Consensus 135 ~G~vFVl~R~~~~~~~ll~a-i~~~ 158 (303)
.|+.||+-|-.+.||=+|++ ++.+
T Consensus 44 ~~~~~VINkQ~p~~QIWlsSp~sGp 68 (97)
T TIGR03422 44 SVGTYVINKQPPNKQIWLSSPVSGP 68 (97)
T ss_pred CCCEEEEeCCChhhHHheecCCCCC
Confidence 38999999999999999998 6654
No 11
>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].
Probab=33.38 E-value=3.8e+02 Score=24.52 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=35.5
Q ss_pred CeEEEEEEEeccc-------eEEEEEEEEEEcCC---CEEEEEEEEeEEeec---------ccccccCCCcccccCCCCc
Q 022035 53 PRVSNIVKFSEAI-------GELKVEAAASIKDG---KRILFQFDKAAFSFK---------FLPFKFPYPVPFRLLGDEA 113 (303)
Q Consensus 53 g~v~N~v~f~~~~-------g~l~V~a~~~~~~~---~rv~v~F~~~~v~~~---------~~~~~~P~p~~~~l~~~~~ 113 (303)
+.++=.|.+.++. -.+.+.+.++..++ .+..+.|.+..+.-+ -.||.+++|.-.++-....
T Consensus 28 e~v~G~V~i~GG~v~Q~I~~I~l~L~t~~~~e~~d~~~~~~~~~~~~~v~~~f~I~~ge~~~iPF~~~lP~etPiT~~~~ 107 (218)
T PF07070_consen 28 ETVRGEVHIKGGSVDQEIDRIYLELVTRYEVESDDKEYTQEVELARVRVSGPFTIEPGEEKEIPFSFPLPWETPITEGGM 107 (218)
T ss_pred CEEEEEEEEEeCCcceEEeEEEEEEEEEEEEecCCCeEEEEEEEEEEEeCCCEEECCCCEEEEeEEEECCCCCCccCCCc
Confidence 4455555555431 23455566655432 356777888776542 2456655443222222334
Q ss_pred ceEEEEEEecC
Q 022035 114 KGWLDTTYLSP 124 (303)
Q Consensus 114 ~Gwld~TYLD~ 124 (303)
.=|+ -|-||=
T Consensus 108 ~v~l-~T~LdI 117 (218)
T PF07070_consen 108 RVWL-RTGLDI 117 (218)
T ss_pred EEEE-EEEEEe
Confidence 4577 444553
No 12
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=32.71 E-value=3.1e+02 Score=23.31 Aligned_cols=59 Identities=24% Similarity=0.315 Sum_probs=38.0
Q ss_pred ccceEEEE-EeeccC-cchhhhhhcCCCCCeeEEccCCcEEEEEEec-CCeEEEEEEEEEEeCCcE
Q 022035 183 LEGEWQML-WSSQME-TDSWIENAGNGLMGKQIVKKNGQMKFEVDIL-LGFKFSMTGTYAKSSTNT 245 (303)
Q Consensus 183 L~G~W~L~-yts~~e-~~~~l~~~~~gl~~~Q~id~~~~~~N~v~~~-~~~~~~v~a~~e~~~~~r 245 (303)
|.|.|+|. |-++.. ....+. . .+.+-++-+++++.|+.-.. .+......++++-.++.-
T Consensus 3 l~GVWQ~c~~~~~~~~~~g~l~-~---~~~lKilS~Dgtf~Ni~~~~~~~aiIt~~GtY~~~sD~~ 64 (133)
T PF14869_consen 3 LQGVWQLCHYVSESPEVPGKLK-P---SNVLKILSDDGTFVNITMIPKSGAIITGYGTYEQPSDNI 64 (133)
T ss_pred ceEEEEEEEEeecCcccCceEe-e---cccEEEEcCCCcEEEEEEeCCCCcEEEEeEEEEEcCCcc
Confidence 78999999 555433 222121 1 11377888889999987644 233456788999877663
No 13
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=21.60 E-value=72 Score=24.87 Aligned_cols=9 Identities=22% Similarity=0.560 Sum_probs=8.0
Q ss_pred EEEEEecCC
Q 022035 117 LDTTYLSPS 125 (303)
Q Consensus 117 ld~TYLD~~ 125 (303)
+-+||+|++
T Consensus 40 ~~vtYiDeD 48 (82)
T cd06397 40 VGVTYIDND 48 (82)
T ss_pred eEEEEEcCC
Confidence 889999994
No 14
>TIGR02334 prpF probable AcnD-accessory protein PrpF. The 2-methylcitrate cycle is one of at least five degradation pathways for propionate via propionyl-CoA. Degradation of propionate toward pyruvate consumes oxaloacetate and releases succinate. Oxidation of succinate back into oxaloacetate by the TCA cycle makes the 2-methylcitrate pathway a cycle. This family consists of PrpF, an incompletely characterized protein that appears to be an essential accessory protein for the Fe/S-dependent 2-methylisocitrate dehydratase AcnD (TIGR02333). This protein is related to but distinct from FldA (part of Pfam family pfam04303), a putative fluorene degradation protein of Sphingomonas sp. LB126.
Probab=20.58 E-value=3.9e+02 Score=26.73 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=27.7
Q ss_pred ceEEEeCCCCcEEEEeecCchh---hhhhhcccCchHHHHHHHHH
Q 022035 127 NLRISRGNKGTTFVLQKKTEPR---QTLLSAISTGTQVEQAINEF 168 (303)
Q Consensus 127 dlRI~RG~~G~vFVl~R~~~~~---~~ll~ai~~~~~i~~~i~~L 168 (303)
.++++-=|-|+-+||+|..|+- .++-+.|....+..+.++++
T Consensus 203 ~i~vS~IDaanP~Vfv~A~dlGl~G~E~p~~l~~~~~ll~~lE~I 247 (390)
T TIGR02334 203 TFKATLINAGIPTVFVNAEDLGYTGTELQDAINGDPAALAMFETI 247 (390)
T ss_pred eEEEEEEECCCcEEEEEHHHcCCCCccCHHHHhchHHHHHHHHHH
Confidence 4666666669999999999882 55555565555444444443
Done!