Query 022035
Match_columns 303
No_of_seqs 224 out of 499
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 13:00:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gzv_A Hypothetical protein; A 71.3 42 0.0014 27.6 11.0 65 179-247 8-75 (142)
2 4i95_A Putative uncharacterize 69.3 46 0.0016 27.3 10.3 75 6-89 6-81 (142)
3 4gzv_A Hypothetical protein; A 55.3 86 0.003 25.7 9.7 69 9-87 9-79 (142)
4 4i95_A Putative uncharacterize 51.4 1E+02 0.0034 25.3 9.4 64 180-247 9-75 (142)
5 1z8m_A Conserved hypothetical 31.8 35 0.0012 24.3 3.1 17 159-175 25-41 (88)
6 1qwd_A Outer membrane lipoprot 27.5 2.5E+02 0.0086 22.8 9.1 37 115-153 114-153 (177)
7 2a6s_A Toxin YOEB; YEFM, antit 23.4 67 0.0023 22.5 3.3 16 159-175 25-40 (84)
8 1qwd_A Outer membrane lipoprot 17.8 4E+02 0.014 21.6 8.7 55 233-301 88-148 (177)
9 1zav_U 50S ribosomal protein L 17.1 59 0.002 19.6 1.5 24 148-171 3-28 (30)
10 1dd4_C 50S ribosomal protein L 17.1 82 0.0028 20.2 2.2 28 148-175 3-32 (40)
No 1
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=71.34 E-value=42 Score=27.63 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=41.5
Q ss_pred cccCccceEEEE-EeeccCcch-hhhhhcCCCCCeeEEccCCcEEEEEEecCC-eEEEEEEEEEEeCCcEEE
Q 022035 179 ERELLEGEWQML-WSSQMETDS-WIENAGNGLMGKQIVKKNGQMKFEVDILLG-FKFSMTGTYAKSSTNTYN 247 (303)
Q Consensus 179 ~~~lL~G~W~L~-yts~~e~~~-~l~~~~~gl~~~Q~id~~~~~~N~v~~~~~-~~~~v~a~~e~~~~~rv~ 247 (303)
.+.-|.|.|+|. |.++..... -+ +. .+.+=+|.+++++.|++-.... .-....++++..|+....
T Consensus 8 ~~~~L~GvWQ~c~y~~~~~~~~~~l-~~---s~~~KIlS~DgtF~N~~m~~~~~aiIt~yGtY~l~SD~~Y~ 75 (142)
T 4gzv_A 8 KAADLKGIWQLCHYVSESPDVPGAL-KP---SNTFKVLSDDGRIVNFTIIPGADAIITGYGTYKQLTDDSYK 75 (142)
T ss_dssp GSCCCCEEEEEEEEEESSTTSCCEE-EE---EEEEEEECTTSEEEEEECCTTSCCEEEEEEEEEEEETTEEE
T ss_pred ccccceEEeEEeeEeecCCCCCceE-ee---cCceEEECCCCcEEEEEEeCCCCcEEEEeEEEEecCCCeee
Confidence 456799999988 444432211 11 10 1138899989999998754423 334678999998877643
No 2
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=69.34 E-value=46 Score=27.30 Aligned_cols=75 Identities=13% Similarity=0.171 Sum_probs=49.7
Q ss_pred CCCCCCCceEEEEEeeCCCCCCCcccccccC-ceecceEEEEEeeCCCCeEEEEEEEeccceEEEEEEEEEEcCCCEEEE
Q 022035 6 QTGSSLIEGRWQLMFTTRPGTASPIQRTFVG-VETFSVFQEISLRTNDPRVSNIVKFSEAIGELKVEAAASIKDGKRILF 84 (303)
Q Consensus 6 Pt~~~lL~G~W~L~yTt~~~~~~~~~~~~~g-~~~~~i~Q~I~~~~~~g~v~N~v~f~~~~g~l~V~a~~~~~~~~rv~v 84 (303)
-....-|.|-|+|+.-.+.... .|| +.-+..+..+ ++.|++.|++-..+....+...++|+..++....=
T Consensus 6 ~~~~~~L~GvWQ~C~y~s~~pd------~~g~L~psn~lKIl---SdDgtF~Ni~m~~~~~aiIt~~GtY~~~SD~~Y~E 76 (142)
T 4i95_A 6 AFEPAHLQGIWQLCHYVSENPD------IPGVLKPSNTFKVL---SDDGRIVNFTIRPGTDAIITGYGTYRQISAAAYKE 76 (142)
T ss_dssp CCCCCSCCEEEEEEEEECSSTT------SCCEEEEEEEEEEE---CTTSEEEEEECCTTSCCEEEEEEEEEEEETTEEEE
T ss_pred ccCcccceeEeEEEEEecCCCC------CceEeccCccEEEE---cCCCcEEEEEEecCCCcEEEEeEEEEecCCcceee
Confidence 3446779999999976654322 233 2334455555 36789999998855556677788888888777655
Q ss_pred EEEEe
Q 022035 85 QFDKA 89 (303)
Q Consensus 85 ~F~~~ 89 (303)
.-++-
T Consensus 77 ~IeKn 81 (142)
T 4i95_A 77 SIEKN 81 (142)
T ss_dssp EEEEE
T ss_pred eeccc
Confidence 55444
No 3
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=55.30 E-value=86 Score=25.74 Aligned_cols=69 Identities=14% Similarity=0.221 Sum_probs=44.5
Q ss_pred CCCCceEEEEEe-eCCCCCCCcccccccC-ceecceEEEEEeeCCCCeEEEEEEEeccceEEEEEEEEEEcCCCEEEEEE
Q 022035 9 SSLIEGRWQLMF-TTRPGTASPIQRTFVG-VETFSVFQEISLRTNDPRVSNIVKFSEAIGELKVEAAASIKDGKRILFQF 86 (303)
Q Consensus 9 ~~lL~G~W~L~y-Tt~~~~~~~~~~~~~g-~~~~~i~Q~I~~~~~~g~v~N~v~f~~~~g~l~V~a~~~~~~~~rv~v~F 86 (303)
+.-|.|-|+|++ -++... .+| +..+..+..| +++|++.|.+-.......+...++|+..|++...=.-
T Consensus 9 ~~~L~GvWQ~c~y~~~~~~-------~~~~l~~s~~~KIl---S~DgtF~N~~m~~~~~aiIt~yGtY~l~SD~~Y~E~i 78 (142)
T 4gzv_A 9 AADLKGIWQLCHYVSESPD-------VPGALKPSNTFKVL---SDDGRIVNFTIIPGADAIITGYGTYKQLTDDSYKESI 78 (142)
T ss_dssp SCCCCEEEEEEEEEESSTT-------SCCEEEEEEEEEEE---CTTSEEEEEECCTTSCCEEEEEEEEEEEETTEEEEEE
T ss_pred cccceEEeEEeeEeecCCC-------CCceEeecCceEEE---CCCCcEEEEEEeCCCCcEEEEeEEEEecCCCeeeeee
Confidence 577999999994 333211 222 3344566666 3568999999766555567777888888887654433
Q ss_pred E
Q 022035 87 D 87 (303)
Q Consensus 87 ~ 87 (303)
+
T Consensus 79 ~ 79 (142)
T 4gzv_A 79 E 79 (142)
T ss_dssp E
T ss_pred c
Confidence 3
No 4
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=51.39 E-value=1e+02 Score=25.30 Aligned_cols=64 Identities=17% Similarity=0.111 Sum_probs=41.6
Q ss_pred ccCccceEEEEEeeccCcchhhhhhcCCCC-C-eeEEccCCcEEEEEEecCC-eEEEEEEEEEEeCCcEEE
Q 022035 180 RELLEGEWQMLWSSQMETDSWIENAGNGLM-G-KQIVKKNGQMKFEVDILLG-FKFSMTGTYAKSSTNTYN 247 (303)
Q Consensus 180 ~~lL~G~W~L~yts~~e~~~~l~~~~~gl~-~-~Q~id~~~~~~N~v~~~~~-~~~~v~a~~e~~~~~rv~ 247 (303)
..-|.|.|+|..-.+.+..-+.. + .+ | +-+|.+++++.|++-.... ......++++..|+....
T Consensus 9 ~~~L~GvWQ~C~y~s~~pd~~g~-L---~psn~lKIlSdDgtF~Ni~m~~~~~aiIt~~GtY~~~SD~~Y~ 75 (142)
T 4i95_A 9 PAHLQGIWQLCHYVSENPDIPGV-L---KPSNTFKVLSDDGRIVNFTIRPGTDAIITGYGTYRQISAAAYK 75 (142)
T ss_dssp CCSCCEEEEEEEEECSSTTSCCE-E---EEEEEEEEECTTSEEEEEECCTTSCCEEEEEEEEEEEETTEEE
T ss_pred cccceeEeEEEEEecCCCCCceE-e---ccCccEEEEcCCCcEEEEEEecCCCcEEEEeEEEEecCCccee
Confidence 35699999998776544221111 0 12 2 7888888999998666322 344678899988766543
No 5
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=31.78 E-value=35 Score=24.26 Aligned_cols=17 Identities=6% Similarity=0.077 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHhcCCCC
Q 022035 159 TQVEQAINEFISSNQST 175 (303)
Q Consensus 159 ~~i~~~i~~Le~~np~~ 175 (303)
+.+.++++.|.+.||-+
T Consensus 25 ~~~~~~i~~l~~~~p~~ 41 (88)
T 1z8m_A 25 SVLNEVILTLRKKEPLD 41 (88)
T ss_dssp HHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHhcCCCCc
Confidence 46788888886556643
No 6
>1qwd_A Outer membrane lipoprotein BLC; bacterial lipocalin, lipid binding protein; 1.75A {Escherichia coli} SCOP: b.60.1.1 PDB: 2aco_A* 3mbt_A
Probab=27.47 E-value=2.5e+02 Score=22.85 Aligned_cols=37 Identities=8% Similarity=0.156 Sum_probs=26.4
Q ss_pred eEEEEEEecCCCc---eEEEeCCCCcEEEEeecCchhhhhhh
Q 022035 115 GWLDTTYLSPSGN---LRISRGNKGTTFVLQKKTEPRQTLLS 153 (303)
Q Consensus 115 Gwld~TYLD~~~d---lRI~RG~~G~vFVl~R~~~~~~~ll~ 153 (303)
+-+-+.++|+ + +=++..++..++||.|...+.++.++
T Consensus 114 ~~y~Vl~tD~--~Ya~~~v~~~~~~~~wILsR~p~l~~~~~~ 153 (177)
T 1qwd_A 114 GGYNVIALDR--EYRHALVCGPDRDYLWILSRTPTISDEVKQ 153 (177)
T ss_dssp EEEEEEEEBT--TSSEEEEECSSTTCEEEEESSSSCCHHHHH
T ss_pred ceEEEEEECC--CeeEEEEecCCCcEEEEEECCCCCCHHHHH
Confidence 5456888997 7 33455578889999999887655433
No 7
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=23.40 E-value=67 Score=22.49 Aligned_cols=16 Identities=6% Similarity=0.131 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHhcCCCC
Q 022035 159 TQVEQAINEFISSNQST 175 (303)
Q Consensus 159 ~~i~~~i~~Le~~np~~ 175 (303)
+.|.++|++|.. ||-+
T Consensus 25 ~~i~~~i~~l~~-~P~~ 40 (84)
T 2a6s_A 25 KKINELIKDTRR-TPFE 40 (84)
T ss_dssp HHHHHHHHHHHH-STTS
T ss_pred HHHHHHHHHHHh-CCCC
Confidence 356677777754 6654
No 8
>1qwd_A Outer membrane lipoprotein BLC; bacterial lipocalin, lipid binding protein; 1.75A {Escherichia coli} SCOP: b.60.1.1 PDB: 2aco_A* 3mbt_A
Probab=17.81 E-value=4e+02 Score=21.57 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=35.0
Q ss_pred EEEEEEEEe---CCcEEEEEEeecEEEeCceeecCCCCceeEEEEEEeeCcee---EEeCCCCcEEEEEecCCCC
Q 022035 233 SMTGTYAKS---STNTYNVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMR---ISRGYNNILFVHLRTDGSN 301 (303)
Q Consensus 233 ~v~a~~e~~---~~~rv~V~F~~~~l~~~~~~~p~~~~~~gwlditYLDe~lR---I~RG~~G~~FVl~R~~~~~ 301 (303)
.+.++..+. .+.+..|+|- +++ .+=.-|.++|++-+ +|..++..++||.|...+.
T Consensus 88 ~~~g~a~~~~~~~~gkl~v~f~------~p~--------~~~y~Vl~tD~~Ya~~~v~~~~~~~~wILsR~p~l~ 148 (177)
T 1qwd_A 88 QSEGKAYFTGAPTRAALKVSFF------GPF--------YGGYNVIALDREYRHALVCGPDRDYLWILSRTPTIS 148 (177)
T ss_dssp EEEEEEEESSCTTSCEEEEEEE------TTE--------EEEEEEEEEBTTSSEEEEECSSTTCEEEEESSSSCC
T ss_pred EEEEEEEECCCCCCcEEEEEec------CCc--------cceEEEEEECCCeeEEEEecCCCcEEEEEECCCCCC
Confidence 344444443 3467777772 222 24455888998844 4566788899999987654
No 9
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=17.15 E-value=59 Score=19.57 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=18.5
Q ss_pred hhhhhhcccCch--HHHHHHHHHHhc
Q 022035 148 RQTLLSAISTGT--QVEQAINEFISS 171 (303)
Q Consensus 148 ~~~ll~ai~~~~--~i~~~i~~Le~~ 171 (303)
+++++++|+.-+ ++.+++.+||..
T Consensus 3 ~~~iie~i~~lTvlEl~eLvk~lEe~ 28 (30)
T 1zav_U 3 IDEIIEAIEKLTVSELAELVKKLEDK 28 (30)
T ss_dssp HHHHHHHHHHSBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 467888888865 788888888753
No 10
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=17.15 E-value=82 Score=20.21 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=22.9
Q ss_pred hhhhhhcccCch--HHHHHHHHHHhcCCCC
Q 022035 148 RQTLLSAISTGT--QVEQAINEFISSNQST 175 (303)
Q Consensus 148 ~~~ll~ai~~~~--~i~~~i~~Le~~np~~ 175 (303)
+++++++|+.-+ ++.++++.||..-..+
T Consensus 3 ~~~iie~i~~lTvlE~~eLvk~leekfGVs 32 (40)
T 1dd4_C 3 IDEIIEAIEKLTVSELAELVKKLEDKFGVT 32 (40)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHCCC
Confidence 478999999966 8899999998876544
Done!