Query 022035
Match_columns 303
No_of_seqs 224 out of 499
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 13:00:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022035.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022035hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gyc31 a.108.1.1 (3:2-48) Rib 33.2 8.4 0.00061 24.1 1.4 28 148-175 3-32 (47)
2 d2bkfa1 d.15.2.2 (A:1-85) Next 30.9 14 0.001 26.1 2.5 9 117-125 44-52 (85)
3 d1ekga_ d.82.2.1 (A:) C-termin 18.9 34 0.0025 25.1 2.9 38 117-156 34-71 (119)
4 d1ik0a_ a.26.1.2 (A:) Interleu 11.6 31 0.0022 25.1 0.7 35 156-195 5-39 (113)
5 d1wzaa1 b.71.1.1 (A:437-515) B 11.5 42 0.003 22.1 1.3 24 172-195 29-52 (79)
6 d1z8ma1 d.298.1.2 (A:1-88) Hyp 11.4 44 0.0032 23.0 1.5 29 159-187 25-53 (88)
7 d1e2ya_ c.47.1.10 (A:) Trypare 11.2 38 0.0027 25.4 1.2 34 138-171 127-160 (167)
8 d1q67a_ b.55.1.7 (A:) Dcp1 {Ba 10.8 41 0.003 27.3 1.3 26 131-156 37-62 (207)
9 d2fqla1 d.82.2.1 (A:61-172) C- 10.7 63 0.0046 23.3 2.3 37 116-155 39-75 (112)
10 d1dd3a1 a.108.1.1 (A:1-57) Rib 10.1 78 0.0057 20.2 2.2 25 148-172 3-29 (57)
No 1
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=33.19 E-value=8.4 Score=24.13 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=23.3
Q ss_pred hhhhhhcccCch--HHHHHHHHHHhcCCCC
Q 022035 148 RQTLLSAISTGT--QVEQAINEFISSNQST 175 (303)
Q Consensus 148 ~~~ll~ai~~~~--~i~~~i~~Le~~np~~ 175 (303)
|+++|+||+.-. +|-++|.++|..-...
T Consensus 3 ke~Ileaia~MSVmdvveLi~amEEKFGVs 32 (47)
T d2gyc31 3 KDQIIEAVAAMSVMDVVELISAMEEKFGVS 32 (47)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhCcc
Confidence 678999999866 8999999999876543
No 2
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.86 E-value=14 Score=26.07 Aligned_cols=9 Identities=22% Similarity=0.564 Sum_probs=8.0
Q ss_pred EEEEEecCC
Q 022035 117 LDTTYLSPS 125 (303)
Q Consensus 117 ld~TYLD~~ 125 (303)
+.+.|+|++
T Consensus 44 ~~lkY~Ddd 52 (85)
T d2bkfa1 44 IQIKYLDEE 52 (85)
T ss_dssp EEEEEECTT
T ss_pred ceEEEEcCC
Confidence 899999993
No 3
>d1ekga_ d.82.2.1 (A:) C-terminal domain of frataxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.86 E-value=34 Score=25.13 Aligned_cols=38 Identities=32% Similarity=0.382 Sum_probs=30.0
Q ss_pred EEEEEecCCCceEEEeCCCCcEEEEeecCchhhhhhhccc
Q 022035 117 LDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAIS 156 (303)
Q Consensus 117 ld~TYLD~~~dlRI~RG~~G~vFVl~R~~~~~~~ll~ai~ 156 (303)
+|+-|-|. =|-|.=+++|+.||+-|-.+.||=+|++=.
T Consensus 34 ~D~e~~~g--vLti~f~~~~~~~VINkQ~p~~QIWlASp~ 71 (119)
T d1ekga_ 34 YDVSFGSG--VLTVKLGGDLGTYVINKQTPNKQIWLSSPS 71 (119)
T ss_dssp CEEEEETT--EEEEECCTTCCEEEEEEEGGGTEEEEEETT
T ss_pred eeeeccCC--EEEEEECCCCcEEEEeCCCCceeEEEEcCC
Confidence 56666665 666666667999999999999999998733
No 4
>d1ik0a_ a.26.1.2 (A:) Interleukin-13 (IL-13) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.59 E-value=31 Score=25.08 Aligned_cols=35 Identities=26% Similarity=0.545 Sum_probs=24.9
Q ss_pred cCchHHHHHHHHHHhcCCCCccccccCccceEEEEEeecc
Q 022035 156 STGTQVEQAINEFISSNQSTAEEERELLEGEWQMLWSSQM 195 (303)
Q Consensus 156 ~~~~~i~~~i~~Le~~np~~~p~~~~lL~G~W~L~yts~~ 195 (303)
.+..+.+|+|+||...+.+. ..+|.+| -|+||-.-
T Consensus 5 p~~~aLkELIeeL~nitqnq---kapLCNG--SMVWsVnl 39 (113)
T d1ik0a_ 5 PPSTALRELIEELVNITQNQ---KAPLCNG--SMVWSINL 39 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHSC---SSCSSSS--CEEECCCC
T ss_pred CccHHHHHHHHHHHhccccc---cCcccCC--ceEEEEec
Confidence 34567899999998876553 3478888 57777653
No 5
>d1wzaa1 b.71.1.1 (A:437-515) Bacterial alpha-Amylase {Halothermothrix orenii [TaxId: 31909]}
Probab=11.55 E-value=42 Score=22.14 Aligned_cols=24 Identities=21% Similarity=0.428 Sum_probs=17.9
Q ss_pred CCCCccccccCccceEEEEEeecc
Q 022035 172 NQSTAEEERELLEGEWQMLWSSQM 195 (303)
Q Consensus 172 np~~~p~~~~lL~G~W~L~yts~~ 195 (303)
|-...|......+|+|.|++.|..
T Consensus 29 nlvnrpvkikvasgnwtllfnsgd 52 (79)
T d1wzaa1 29 NLVNRPVKIKVASGNWTLLFNSGD 52 (79)
T ss_dssp ECSSSCEEEEEESSCEEEEEESSS
T ss_pred hhcCCcEEEEEecCcEEEEEccCC
Confidence 345566666678999999999853
No 6
>d1z8ma1 d.298.1.2 (A:1-88) Hypothetical protein HP0894 {Helicobacter pylori [TaxId: 210]}
Probab=11.45 E-value=44 Score=23.01 Aligned_cols=29 Identities=14% Similarity=0.343 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHhcCCCCccccccCccceE
Q 022035 159 TQVEQAINEFISSNQSTAEEERELLEGEW 187 (303)
Q Consensus 159 ~~i~~~i~~Le~~np~~~p~~~~lL~G~W 187 (303)
+.+.++|..|...+|-|.-.....|.|+|
T Consensus 25 ~~~~~~i~~L~~~~pl~~~~~dH~L~G~~ 53 (88)
T d1z8ma1 25 SVLNEVILTLRKKEPLDPQFQDHALKGKW 53 (88)
T ss_dssp HHHHHHHHHHTTSCCCCGGGCCEECSGGG
T ss_pred HHHHHHHHHHHcCCCCCccccCccccCcc
Confidence 46777788887666655433444555543
No 7
>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}
Probab=11.20 E-value=38 Score=25.37 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=15.0
Q ss_pred EEEEeecCchhhhhhhcccCchHHHHHHHHHHhc
Q 022035 138 TFVLQKKTEPRQTLLSAISTGTQVEQAINEFISS 171 (303)
Q Consensus 138 vFVl~R~~~~~~~ll~ai~~~~~i~~~i~~Le~~ 171 (303)
+||.-+++-.|......+..++.++++++.||++
T Consensus 127 tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~al 160 (167)
T d1e2ya_ 127 VFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEAL 160 (167)
T ss_dssp EEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred EEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence 4444444444443333333333444444444443
No 8
>d1q67a_ b.55.1.7 (A:) Dcp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.81 E-value=41 Score=27.31 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=13.4
Q ss_pred EeCCCCcEEEEeecCchhhhhhhccc
Q 022035 131 SRGNKGTTFVLQKKTEPRQTLLSAIS 156 (303)
Q Consensus 131 ~RG~~G~vFVl~R~~~~~~~ll~ai~ 156 (303)
-.+-.|++||..|+..++|.+|..-.
T Consensus 37 K~~vEGtLFVy~R~~~p~~~~lp~~~ 62 (207)
T d1q67a_ 37 KLEYQGVLAIYLRDVSQNTNLLPVSP 62 (207)
T ss_dssp EEEEEEEEEEEEECCC----------
T ss_pred ecCceeEEEEEEeccccccccCCccc
Confidence 34457999999999999998876433
No 9
>d2fqla1 d.82.2.1 (A:61-172) C-terminal domain of frataxin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.66 E-value=63 Score=23.29 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=28.2
Q ss_pred EEEEEEecCCCceEEEeCCCCcEEEEeecCchhhhhhhcc
Q 022035 116 WLDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAI 155 (303)
Q Consensus 116 wld~TYLD~~~dlRI~RG~~G~vFVl~R~~~~~~~ll~ai 155 (303)
-+|+-|-+. =|-|.=++ |+.||+-|..+.||=+|++=
T Consensus 39 d~D~e~~~g--vLti~~~~-~~~~VINkQ~p~~QIWlaSp 75 (112)
T d2fqla1 39 IPDVELSHG--VMTLEIPA-FGTYVINKQPPNKQIWLASP 75 (112)
T ss_dssp SCEEECCSS--EEEEEETT-TEEEEEEECCSSSSEEEEET
T ss_pred ceeeeccCC--EEEEEECC-CCEEEEeCCCchhheeEecC
Confidence 346666555 66666653 89999999999999999873
No 10
>d1dd3a1 a.108.1.1 (A:1-57) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=10.11 E-value=78 Score=20.20 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=20.1
Q ss_pred hhhhhhcccCch--HHHHHHHHHHhcC
Q 022035 148 RQTLLSAISTGT--QVEQAINEFISSN 172 (303)
Q Consensus 148 ~~~ll~ai~~~~--~i~~~i~~Le~~n 172 (303)
++.++++|+... +..+++.+||..-
T Consensus 3 ~e~iie~I~~~tv~El~ELvKalEekf 29 (57)
T d1dd3a1 3 IDEIIEAIEKLTVSELAELVKKLEDKF 29 (57)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 567889999866 7889999998763
Done!