Query 022041
Match_columns 303
No_of_seqs 131 out of 1146
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 07:34:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022041.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022041hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02724 Molybdenum cofactor s 100.0 3.3E-66 7.2E-71 537.1 28.6 268 3-292 516-803 (805)
2 COG3217 Uncharacterized Fe-S p 100.0 2.5E-63 5.4E-68 440.3 22.7 263 5-296 2-266 (270)
3 KOG2362 Uncharacterized Fe-S p 100.0 1.3E-62 2.9E-67 440.6 16.5 291 2-298 40-336 (336)
4 PF03476 MOSC_N: MOSC N-termin 100.0 4.4E-34 9.5E-39 231.9 7.3 119 4-133 1-120 (120)
5 PF03473 MOSC: MOSC domain; I 100.0 1.8E-29 3.9E-34 208.1 9.0 120 156-291 11-133 (133)
6 KOG2142 Molybdenum cofactor su 99.4 1.8E-13 3.9E-18 134.6 3.8 196 6-240 465-671 (728)
7 PRK14499 molybdenum cofactor b 98.6 1.5E-07 3.2E-12 87.8 9.3 103 164-293 203-307 (308)
8 PRK11536 6-N-hydroxylaminopuri 98.1 2.2E-05 4.8E-10 70.1 10.6 107 164-296 55-167 (223)
9 COG2258 Uncharacterized protei 98.1 1.4E-05 3E-10 70.3 8.5 107 165-297 56-165 (210)
10 PF05962 HutD: HutD; InterPro 44.7 71 0.0015 27.6 6.2 50 5-55 16-73 (184)
11 KOG3347 Predicted nucleotide k 33.4 24 0.00052 30.0 1.4 28 187-214 3-40 (176)
12 PRK14499 molybdenum cofactor b 25.1 84 0.0018 29.6 3.6 36 3-39 161-197 (308)
13 TIGR03635 S17_bact 30S ribosom 24.2 68 0.0015 23.4 2.3 16 281-296 47-62 (71)
14 PF14952 zf-tcix: Putative tre 23.6 22 0.00048 23.4 -0.3 19 212-230 3-21 (44)
15 CHL00142 rps17 ribosomal prote 23.3 69 0.0015 24.2 2.2 18 279-296 47-64 (84)
16 COG4110 Uncharacterized protei 22.6 1.9E+02 0.0042 24.7 4.9 38 59-99 114-151 (200)
17 PRK05610 rpsQ 30S ribosomal pr 21.8 78 0.0017 23.9 2.2 18 279-296 50-67 (84)
18 COG4416 Com Mu-like prophage p 21.8 51 0.0011 22.8 1.1 13 219-231 23-35 (60)
19 PF03658 Ub-RnfH: RnfH family 20.4 64 0.0014 24.4 1.5 26 265-293 47-72 (84)
No 1
>PLN02724 Molybdenum cofactor sulfurase
Probab=100.00 E-value=3.3e-66 Score=537.07 Aligned_cols=268 Identities=33% Similarity=0.588 Sum_probs=234.3
Q ss_pred CceEEeeeeeeccCCCCCeeecceeeeeccCcccCceeEEEecCCceeeecCCcceeeEEEecCCcccccCCCCCCCceE
Q 022041 3 AAAKVKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPTGRSFM 82 (303)
Q Consensus 3 ~~~~V~~L~iyPIKS~~g~~v~~~~~l~~~Gl~~DR~~~i~~~~g~~lt~r~~P~l~~i~~~~~~~~~~~~~~~~~~~~l 82 (303)
..++|++|||||||||+|++| ++|++++.||.|||+|||+|++|+++|||++|+|++|++.++.. ++.|
T Consensus 516 ~~~~v~~l~iYPVKS~~g~~v-~~a~~~~~Gl~~DR~~~lvd~~g~~~t~r~~p~l~~i~~~~~~~----------~~~l 584 (805)
T PLN02724 516 DSHRLKSITVYPIKSCAGFSV-ERWPLSETGLLYDREWMIQSLTGEILTQKKVPEMCLITTFIDLE----------SGKL 584 (805)
T ss_pred CCCEEEEEEEeccccCCCcee-eEEEEecccccccceEEEEcCCCcEEEcccCceEEEEEeEEecC----------CCeE
Confidence 456899999999999999999 99999999999999999999999999999999999999999532 4679
Q ss_pred EEEeCCCc-eEEEeccCCCC--CccceEEecccccccccchHHHHHHHhhhCCCeEEEEecCCCCCCCCC-----cCcC-
Q 022041 83 VIRAPGMQ-ALKISLSKPRD--IADGVSVWEWCGSALAEGAEASNWFTNYLGKPSRLVRYNAESETRPVD-----PKYA- 153 (303)
Q Consensus 83 ~l~~p~~~-~l~i~l~~~~~--~~~~~~~~~~~~~~~~~g~~~~~wlS~~lg~~~rLv~~~~~~~~r~~~-----~~~~- 153 (303)
++++|+++ ++.|++..... ....+++|++.+.+++||+++++|||++||++|+|+++++... |..+ +.+.
T Consensus 585 ~l~~~~~~~~l~v~l~~~~~~~~~~~v~v~~~~~~~~~~g~~~~~w~S~~lg~~~~Lv~~~~~~~-r~~~~~~~~~~~~~ 663 (805)
T PLN02724 585 VVRAPRCDHKLEIPLESDSQHEESGEVILCGNRAESMSYGTEINEWFTNALGRRCTLVRKSSSNT-RVCRNRNPSHSPCG 663 (805)
T ss_pred EEEcCCCCccEEEeCCCcccccccceeEEeCCcceeEecchhHHHHHHHHhCCceEEEEeCCccc-cccccccccccccc
Confidence 99999987 69999976432 3457899999999999999999999999999999999976543 3221 1111
Q ss_pred -CCCceeccCCCceeeeeHhHHHHHHhHhCC-------CCCCcceeceEEEeCCCCCCCCCcceEEEcceEEEeeeeCCC
Q 022041 154 -AGEKIMFSDCYPFMLLSQGSLDALNKLLKE-------PIPINRFRPNILVDGCEPFSEDLWTGIRINNCTFQGVKLCDR 225 (303)
Q Consensus 154 -~~~~~~f~D~~p~~lis~aSl~~l~~~l~~-------~v~~~RFRpNIvv~g~~pf~Ed~W~~l~IG~~~l~~~~~c~R 225 (303)
.+.+.+|+|.+|+||+|++||++||++++. +++++||||||||+|.+||+||.|++|+||+++|++++||.|
T Consensus 664 ~~~~~~~faD~~p~llis~aSl~~Ln~~l~~~~~~~~~~v~~~RFRpNiVv~g~~~f~ED~W~~l~IG~~~~~~~~~C~R 743 (805)
T PLN02724 664 DDESRLSFANEGQFLLISEASVEDLNRRLATGQEDAKIRLDPTRFRPNLVVSGGEAYAEDEWQSLSIGDAEFTVLGGCNR 743 (805)
T ss_pred CcCCceeecCCCceEEecHHHHHHHHHHhccccccccCCCcHHHccceEEECCCCCccccCceEEEECCEEEEEecccCC
Confidence 224589999999999999999999999973 699999999999999999999999999999999999999999
Q ss_pred cCcCeeeCCCCCC--CCChHHHHHHhhcccccCcccccCCccccceeeEEee-cCCCCCEEecCCeEEEe
Q 022041 226 CKVPTINQDTGVA--GPEPSETLRQIRSDKVLRPNQKQQGKIYFGQNLVWKD-NLSNGKVLKLGDPVFVM 292 (303)
Q Consensus 226 C~~~~vdp~tg~~--~~~pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~v~~-~~~~G~~I~VGD~V~v~ 292 (303)
|+||||||+||++ +.|||+||++||+ ..+++.||+|+++.. ..+.| +|+|||.|++.
T Consensus 744 C~~~tvDp~tg~~~~~~epl~tL~~~R~---------~~~~~~FG~~~~~~~~~~~~~-~i~vGd~v~~~ 803 (805)
T PLN02724 744 CQMINIDQETGLVNPSNEPLATLASYRR---------VKGKILFGILLRYEISDKRDQ-WIAVGSRVNPR 803 (805)
T ss_pred CCCCcCCcccCccCCCCChHHHHHHHhC---------cCCCCCccceeeccccCCCCc-EEEeCCEEEec
Confidence 9999999999986 5799999999995 347899999997731 12556 99999999875
No 2
>COG3217 Uncharacterized Fe-S protein [General function prediction only]
Probab=100.00 E-value=2.5e-63 Score=440.32 Aligned_cols=263 Identities=32% Similarity=0.592 Sum_probs=236.9
Q ss_pred eEEeeeeeeccCCCCCeeecceeeeeccCcccCceeEEEecCCceeeecCCcceeeEEEecCCcccccCCCCCCCceEEE
Q 022041 5 AKVKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPTGRSFMVI 84 (303)
Q Consensus 5 ~~V~~L~iyPIKS~~g~~v~~~~~l~~~Gl~~DR~~~i~~~~g~~lt~r~~P~l~~i~~~~~~~~~~~~~~~~~~~~l~l 84 (303)
++|++||||||||++|+.+ +++.+...||.+||+|||+|.+|.++|+|++|+|..+++...+ ..+++
T Consensus 2 ~~ls~L~iyPvKSl~g~~l-~~a~v~~~Gl~~DR~fml~d~dG~~itar~~pa~~~~~~~~~~------------~~~~l 68 (270)
T COG3217 2 ATLSQLYIYPVKSLRGERL-SRALVDASGLAGDRRFMLVDPDGRFITARRRPAMVRFTPAYEH------------DGLRL 68 (270)
T ss_pred ccchheeeeccccccchhh-hhheeeccCCccceEEEEEcCCCceeccccccceeEeeeeccc------------cceEE
Confidence 4599999999999999999 9999999999999999999999999999999999999995532 35789
Q ss_pred EeCCCceEEEeccCCCCCccceEEecccccccccchHHHHHHHhhhCCCeEEEEecCCCCCCCCCcCcCCCCceeccCCC
Q 022041 85 RAPGMQALKISLSKPRDIADGVSVWEWCGSALAEGAEASNWFTNYLGKPSRLVRYNAESETRPVDPKYAAGEKIMFSDCY 164 (303)
Q Consensus 85 ~~p~~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~wlS~~lg~~~rLv~~~~~~~~r~~~~~~~~~~~~~f~D~~ 164 (303)
++++.+.+.+...+ ....+++||+++..+...++++++|||.|||+++.|++.+.+..++ .+.. +.....|+|.+
T Consensus 69 ~~~~~~~~~v~~~~--~~~~~~~vw~~~~~a~~~~~a~~d~lS~flg~~v~L~~~~~~~~r~-v~~~--p~~~~~fadg~ 143 (270)
T COG3217 69 TAPDGEELYVRFAD--AQRAPVEVWGDHFTADAAGDAANDWLSGFLGRAVSLRWDGAGFARR-VKAG--PAVPVTFADGY 143 (270)
T ss_pred ecCCCccceeeccc--cccccceeeccccccccchhHHHHHHHhhhceeeEEEecCcccccc-ccCC--CceeeEecCCc
Confidence 99998888888764 3456889999999999999999999999999999999998654332 2211 34578999999
Q ss_pred ceeeeeHhHHHHHHhHhCCCCCCcceeceEEEeCCCCCCCCCcceEEEcceEEEeeeeCCCcCcCeeeCCCCCC--CCCh
Q 022041 165 PFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWTGIRINNCTFQGVKLCDRCKVPTINQDTGVA--GPEP 242 (303)
Q Consensus 165 p~~lis~aSl~~l~~~l~~~v~~~RFRpNIvv~g~~pf~Ed~W~~l~IG~~~l~~~~~c~RC~~~~vdp~tg~~--~~~p 242 (303)
|+|++|++||++|+++.+..++|+|||||||++|..+|.||.|+.|+||++.|.+++||.||.+|++||+||++ +.+|
T Consensus 144 p~l~~~~aSl~dL~~r~~~~~~merFRpNlvv~ge~a~aEd~w~~i~IG~v~F~~vkPC~RCi~Ttvd~~tGe~~p~~~p 223 (270)
T COG3217 144 PILLFNTASLADLRRRVPANLEMERFRPNLVVEGEDAFAEDSWKSIRIGGVRFDVVKPCSRCIFTTVDPDTGERRPGGEP 223 (270)
T ss_pred eEEEEccccHHHHhhhccCCCChhhCCCceEEeecccccccCceEEEEccEEEEEeccchhcceeeECCcccccCCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996 5899
Q ss_pred HHHHHHhhcccccCcccccCCccccceeeEEeecCCCCCEEecCCeEEEeEecC
Q 022041 243 SETLRQIRSDKVLRPNQKQQGKIYFGQNLVWKDNLSNGKVLKLGDPVFVMRKVN 296 (303)
Q Consensus 243 l~tL~~~R~~~~~~~~~~~~~~~~fG~~~~v~~~~~~G~~I~VGD~V~v~~~~~ 296 (303)
+.+|+++|... ..+++.||+|+++. .+| .|++||.|+++..++
T Consensus 224 ~~~~~~~R~~~-------d~~~~~FG~n~~a~---~~g-~ir~Gd~ve~l~~~~ 266 (270)
T COG3217 224 LFTLNRFRTNP-------DAGGVLFGQNLIAR---NEG-RIRVGDAVEVLAVGP 266 (270)
T ss_pred hHHHHhhhccc-------ccCcccccceEEec---cCc-ceecCcceeEEEecc
Confidence 99999999631 15678999999998 888 899999999999877
No 3
>KOG2362 consensus Uncharacterized Fe-S protein [General function prediction only]
Probab=100.00 E-value=1.3e-62 Score=440.56 Aligned_cols=291 Identities=42% Similarity=0.727 Sum_probs=243.0
Q ss_pred CCceEEeeeeeeccCCCCCeeecceeeeeccC----cccCceeEEEecCCceeeecCCcceeeEEEecCCcccccCCCCC
Q 022041 2 EAAAKVKSIFVYPIKSCRGISVCQQAPLTPTG----FRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPT 77 (303)
Q Consensus 2 ~~~~~V~~L~iyPIKS~~g~~v~~~~~l~~~G----l~~DR~~~i~~~~g~~lt~r~~P~l~~i~~~~~~~~~~~~~~~~ 77 (303)
.+.++|++|++||||||+|.+| .+..+|..| ...||.|++++++|+++|||..|+|++|+.......+...|...
T Consensus 40 ~~vg~v~slhiyPiKSC~~~~v-~q~~ct~~g~~~e~~~DR~~lvVn~kg~~iTaRv~P~l~~ies~~~~~~~~v~~~~~ 118 (336)
T KOG2362|consen 40 VPVGRVKSLHIYPIKSCKGIDV-FQYKCTPLGPSMEFLWDRTFLVVNEKGKFITARVKPKLVLIESEMPDGAFLVDWPGP 118 (336)
T ss_pred EEeeeeeeeEEEEeccccccch-hHhhcCCCCcchhheeeceEEEEeccceEEEeeccceEEEeecccccceeEEecCCC
Confidence 4678999999999999999999 999999988 78999999999999999999999999999988766666566533
Q ss_pred -CCceEEEEeCCCceEEEeccCCCCCccceEEecccccccccchHHHHHHHhhhCCCeEEEEecCCCCCCCCCcCcCCCC
Q 022041 78 -GRSFMVIRAPGMQALKISLSKPRDIADGVSVWEWCGSALAEGAEASNWFTNYLGKPSRLVRYNAESETRPVDPKYAAGE 156 (303)
Q Consensus 78 -~~~~l~l~~p~~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~wlS~~lg~~~rLv~~~~~~~~r~~~~~~~~~~ 156 (303)
....+..++++++.+.+++.......++..+|.+...+.+.+.+..+|+..+.++++++.+......++...|.+.++.
T Consensus 119 ~~~s~~~~~~l~~~~~~~~t~~~~~~~dg~~cgd~~~~~~s~~~e~~~~~~~~~~~~~~~er~~~~~~~~~~~p~~~~~d 198 (336)
T KOG2362|consen 119 EKDSVLVFRVLGNKRLKVATLFPDLSADGYDCGDWVASAFSEGIEEPNWRLIFVGKGLYTERTNKPDETWWNNPVPKRGD 198 (336)
T ss_pred cchhhhhhhhccCCccccccccccceeeccccHhhhhhhHHhhhhccchhhhhhcCcceeeecccCCccccCCCccCccc
Confidence 3344555666666666555433333334444444444444444555555556677888888876666677778777888
Q ss_pred ceeccCCCceeeeeHhHHHHHHhHhCCCCCCcceeceEEEeCCCCCCCCCcceEEEcceEEEeeeeCCCcCcCeeeCCCC
Q 022041 157 KIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWTGIRINNCTFQGVKLCDRCKVPTINQDTG 236 (303)
Q Consensus 157 ~~~f~D~~p~~lis~aSl~~l~~~l~~~v~~~RFRpNIvv~g~~pf~Ed~W~~l~IG~~~l~~~~~c~RC~~~~vdp~tg 236 (303)
..+|+|.+|+||+|++||++||.+|+++|+++||||||+|+|+.||+||.|.+|+||+++|+.+.+|+||.+|||||+||
T Consensus 199 ~~~f~D~~Pfli~s~aSL~dLNt~L~~~V~~~~FRpnI~vdgc~~~~ED~W~ei~Igd~~~~~v~~CtRCiltTV~petG 278 (336)
T KOG2362|consen 199 STTFSDLAPFLIASQASLDDLNTRLDKPVPMNNFRPNIVVDGCDAFAEDKWDEIRIGDAEFQCVAPCTRCILTTVDPETG 278 (336)
T ss_pred cccccccchhhhhchhhHHHHHhhhcCCccHhhcccceEEecCccccccccceEEEccEEEEEEeeccceeeeeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-ChHHHHHHhhcccccCcccccCCccccceeeEEeecCCCCCEEecCCeEEEeEecCCc
Q 022041 237 VAGP-EPSETLRQIRSDKVLRPNQKQQGKIYFGQNLVWKDNLSNGKVLKLGDPVFVMRKVNSA 298 (303)
Q Consensus 237 ~~~~-~pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~v~~~~~~G~~I~VGD~V~v~~~~~~~ 298 (303)
+++. +|++||++||.+. ........+++.||+|+... +.| +|+|||.|+|+.+.+++
T Consensus 279 ~~~k~qpletLr~fR~~~-~~~~~~~~~sp~fGv~~~~~---~~g-~I~vGd~Vyv~~k~~~~ 336 (336)
T KOG2362|consen 279 EMSKMQPLETLREFRLDP-GKPRKVHMGSPLFGVYAGLV---NEG-TIKVGDTVYVLYKPSSF 336 (336)
T ss_pred cccccCchhhHHhhhcCC-cccccccCCCcccceeeccc---ccc-eEEeCCEEEEEecCCCC
Confidence 9985 9999999999876 34456667899999999998 899 99999999999887764
No 4
>PF03476 MOSC_N: MOSC N-terminal beta barrel domain; InterPro: IPR005303 This domain is found to the N terminus of MOSC domain (IPR005302 from INTERPRO). The function of this domain is unknown, however it is predicted to adopt a beta barrel fold.; PDB: 2EXN_A.
Probab=100.00 E-value=4.4e-34 Score=231.93 Aligned_cols=119 Identities=41% Similarity=0.810 Sum_probs=64.8
Q ss_pred ceEEeeeeeeccCCCCCeeecceeeeeccCcc-cCceeEEEecCCceeeecCCcceeeEEEecCCcccccCCCCCCCceE
Q 022041 4 AAKVKSIFVYPIKSCRGISVCQQAPLTPTGFR-WDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPTGRSFM 82 (303)
Q Consensus 4 ~~~V~~L~iyPIKS~~g~~v~~~~~l~~~Gl~-~DR~~~i~~~~g~~lt~r~~P~l~~i~~~~~~~~~~~~~~~~~~~~l 82 (303)
|++|++||+||||||+|+++ +++++++.||. |||+|||+|++|+|+|||++|+|++|++.++.+ ++.|
T Consensus 1 m~~v~~L~iyPIKS~~g~~~-~~~~~~~~Gl~~~DR~~~l~d~~g~~it~r~~P~l~~i~~~~~~~----------~~~l 69 (120)
T PF03476_consen 1 MGRVSSLYIYPIKSCRGIEV-DEAEVTPSGLKAGDRRFMLVDEDGRFITQRQYPRLALIRPEIDED----------DGTL 69 (120)
T ss_dssp --------------------------------GT--SEEEEETTS-EE-TTT-GGGG--EEEE-------------SSEE
T ss_pred Cccccccccccccccccccc-cccccccccCCccchhheeECCCCCEEeeccCcceeeEEEEeecc----------eeEE
Confidence 58999999999999999999 99999999996 999999999999999999999999999999632 5789
Q ss_pred EEEeCCCceEEEeccCCCCCccceEEecccccccccchHHHHHHHhhhCCC
Q 022041 83 VIRAPGMQALKISLSKPRDIADGVSVWEWCGSALAEGAEASNWFTNYLGKP 133 (303)
Q Consensus 83 ~l~~p~~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~wlS~~lg~~ 133 (303)
++++|+++.+.+++.........+.+|++.+.+++||+++++|||++||+|
T Consensus 70 ~l~~~~~~~l~i~~~~~~~~~~~v~v~~~~~~~~~~gd~~~~WfS~~Lg~p 120 (120)
T PF03476_consen 70 TLSAPGMPPLEIPLPDSTGPRTEVQVWGDTVEAYDCGDEASEWFSEFLGRP 120 (120)
T ss_dssp EEE-SSS-EEEEESSSS-S-EEEEEETTEEEEEEE--HHHHHHHHHHT---
T ss_pred EEECCCCceEEEEcccccCCEeeEEEECCEeEEEECCHHHHHHHHHHHCcC
Confidence 999999999999998544566789999999999999999999999999986
No 5
>PF03473 MOSC: MOSC domain; InterPro: IPR005302 Molybdenum cofactor (MOCO) sulphurases [] catalyse the insertion of a terminal sulphur ligand into the molybdenum cofactor, thereby converting the oxo form of MOCO to a sulphurylated form. Suphurylated MOCO is required by several enzymes, including: aldehyde oxidase (1.2.3.1 from EC), which function in the last step of abscisic acid biosynthesis in plants []; and xanthine dehydrogenase (1.17.1.4 from EC), which synthesis uric acid from xanthine during nitrogen metabolism []. This entry represents the beta-barrel C-terminal domain of MOCO sulphurase (MOSC domain), which has a beta-barrel structure similar to that of the beta-barrel domain in pyruvate kinase and contains a highly conserved cysteine residue required for activity. MOSC domains are found in several diverse metal-sulphur cluster biosynthesis proteins from both eukaryotes and prokaryotes. MOSC domains occu as either stand-alone forms, such as the YiiM protein from Escherichia coli, or fused to other domains, such as a NifS-like catalytic domain in MOCO sulphurase. The MOSC domain is predicted to be a sulphur-carrier domain that receives sulphur abstracted from pyridoxal phosphate-dependent NifS-like enzymes, on its conserved cysteine, and delivers it for the formation of diverse sulphur-metal clusters []. The MOSC domain contains several patches of hydrophobic residues and an absolutely conserved cysteine residue situated closer to the C-terminal end of the domain. The absolutely conserved cysteine in the MOSC domain is reminiscent of the analogous conservation of a cysteine in the active site of the thioredoxin and rhodanese superfamilies. Members of both these superfamilies, especially of the latter one, have been implicated in the synthesis of Fe-S clusters, through mobilisation of sulphur with their active cysteine. ; GO: 0003824 catalytic activity, 0030151 molybdenum ion binding, 0030170 pyridoxal phosphate binding; PDB: 1ORU_B 1O67_C 1O65_C.
Probab=99.96 E-value=1.8e-29 Score=208.07 Aligned_cols=120 Identities=40% Similarity=0.594 Sum_probs=93.7
Q ss_pred CceeccCCCceeeeeHhHHHHHHhHhCCCC-CCcceeceEEEeCCCCCCCCCc--ceEEEcceEEEeeeeCCCcCcCeee
Q 022041 156 EKIMFSDCYPFMLLSQGSLDALNKLLKEPI-PINRFRPNILVDGCEPFSEDLW--TGIRINNCTFQGVKLCDRCKVPTIN 232 (303)
Q Consensus 156 ~~~~f~D~~p~~lis~aSl~~l~~~l~~~v-~~~RFRpNIvv~g~~pf~Ed~W--~~l~IG~~~l~~~~~c~RC~~~~vd 232 (303)
....|.|.+|++|+|++|+++|+++++.+. +++||||||+|+|.+||+||.| ++++||++.|+++++|.||.++++|
T Consensus 11 ~~~~~~d~~~v~l~s~~s~~~l~~~~~~~~~~~~rFR~Nivv~g~~~f~Ed~w~~~~l~iG~~~l~v~~~~~rC~~~~~~ 90 (133)
T PF03473_consen 11 YKHHFGDERPVSLISQESLDALNARLGEPGLDPRRFRPNIVVDGLPPFDEDDWCGDRLRIGDAVLEVTQPCPRCVMPNVD 90 (133)
T ss_dssp -----GCGGSEEEEECHHHHHHHHHCCCCGGSCCCCT-SEEECS-T---TCCGBTEEEECTTEEEEEEEE----CHHHHH
T ss_pred CcccCCCCCceeeccHHHHHHHHhhhccccCCHhHCCCCEEEeccccccccccceeeeccCCEEEEEEeCcCCCCcccee
Confidence 467899999999999999999999999865 9999999999999999999999 9999999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHhhcccccCcccccCCccccceeeEEeecCCCCCEEecCCeEEE
Q 022041 233 QDTGVAGPEPSETLRQIRSDKVLRPNQKQQGKIYFGQNLVWKDNLSNGKVLKLGDPVFV 291 (303)
Q Consensus 233 p~tg~~~~~pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~v~~~~~~G~~I~VGD~V~v 291 (303)
|+||.++++....+..+- ....+|+|+.+. ++| .|+|||+|+|
T Consensus 91 ~~tg~~~~~~~~~~~~~~------------~~~~~G~~~~V~---~~G-~I~vGD~V~V 133 (133)
T PF03473_consen 91 PDTGERDPEGKPLFGQNA------------SPGRRGVYARVI---KGG-TIRVGDEVEV 133 (133)
T ss_dssp HCHCTCTSTTHHHHHHHH------------CCTSS-EEEEEE---E-E-EEETTSEEEE
T ss_pred eccCcccchhhhhhhhhe------------ecCCceEEEEec---cCC-EEccCCeEEC
Confidence 999999877444444432 234799999998 899 9999999987
No 6
>KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism]
Probab=99.39 E-value=1.8e-13 Score=134.63 Aligned_cols=196 Identities=20% Similarity=0.276 Sum_probs=126.6
Q ss_pred EEeeeeeeccCCCCCeeecceeeeeccCcccCceeEEEecCCceeeecCCcceeeEEEecCCcccccCCCCCCCceEEEE
Q 022041 6 KVKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPTGRSFMVIR 85 (303)
Q Consensus 6 ~V~~L~iyPIKS~~g~~v~~~~~l~~~Gl~~DR~~~i~~~~g~~lt~r~~P~l~~i~~~~~~~~~~~~~~~~~~~~l~l~ 85 (303)
.+.+++.|||| |+.+++ +++.....|+.|||.||++|-+|.+|++++++++.||.+.+.. +.
T Consensus 465 ~d~~~~s~~~~-~~~~EI-~~~~~~~~gl~~~~s~m~~~~~~~alr~etE~e~~Li~~~~~~----------------~~ 526 (728)
T KOG2142|consen 465 FDAAVASYPIK-CAAFEI-EEENSGSQGLKYDRSWMSVDMNGSALRQETESELCLIGPRIKV----------------QE 526 (728)
T ss_pred hhhhhhhhhhh-hceeEe-eccCccccccccccccccccccccceeeecccceeeeccccch----------------hh
Confidence 35678999999 999999 9999999999999999999999999999999999999999853 11
Q ss_pred eCCCceEEEeccC--CCCCccceEEec-ccccccccchHHHHHHHhhhCCCe------EEEEecCCCCCCCCCcCcC--C
Q 022041 86 APGMQALKISLSK--PRDIADGVSVWE-WCGSALAEGAEASNWFTNYLGKPS------RLVRYNAESETRPVDPKYA--A 154 (303)
Q Consensus 86 ~p~~~~l~i~l~~--~~~~~~~~~~~~-~~~~~~~~g~~~~~wlS~~lg~~~------rLv~~~~~~~~r~~~~~~~--~ 154 (303)
..+++ .+|+++. .......+.++. ..++++|+++-...|+++-.|+.. .|+ ..+............ -
T Consensus 527 d~~~~-~~vs~~~sl~~~~a~~~s~~d~~~c~~iDh~~~lgln~t~~r~r~ll~wl~~sl~-~~~~~~~~~~~~nlvq~y 604 (728)
T KOG2142|consen 527 DEQSE-RRVSFPTSLEQGEASKCSSYDCPPCRGIDHVDSLGLNLTTNRGRELLNWLVQSLR-NLQHSESSSTTVNLVQIY 604 (728)
T ss_pred hcccc-eeecchhhhhhhhhhhcccccCccccccchhhhhhHHhhhhhhhhHHHHHHHhcc-cccccccccccccceeee
Confidence 11122 2233211 001111111111 346788999988999988776642 221 110000000000000 0
Q ss_pred CCceeccCCCceeeeeHhHHHHHHhHhCCCCCCcceeceEEEeCCCCCCCCCcceEEEcceEEEeeeeCCCcCcCeeeCC
Q 022041 155 GEKIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWTGIRINNCTFQGVKLCDRCKVPTINQD 234 (303)
Q Consensus 155 ~~~~~f~D~~p~~lis~aSl~~l~~~l~~~v~~~RFRpNIvv~g~~pf~Ed~W~~l~IG~~~l~~~~~c~RC~~~~vdp~ 234 (303)
+....+.....+. -+|.+ -..|||.||+|++...|+|-+|+.+-||..+|.+ ||.| ++||.
T Consensus 605 gpk~~~erG~~~~----fnl~d---------~~~~fr~p~IV~~lae~E~isl~~~~l~~iri~d--p~~r----~~dq~ 665 (728)
T KOG2142|consen 605 GPKTKYERGPAVA----FNLFD---------LSKRFRAPIIVNKLAEREEISLGELSLGHIRIQD--PCHR----DIDQL 665 (728)
T ss_pred cCccccccChhhe----eehhh---------hhccccchhhhcchhhhhcccccceeeeeeEEec--Ccch----hhhHH
Confidence 0011111111100 01121 2579999999999999999999999999999988 8999 67999
Q ss_pred CCCCCC
Q 022041 235 TGVAGP 240 (303)
Q Consensus 235 tg~~~~ 240 (303)
+|++..
T Consensus 666 ~~~r~~ 671 (728)
T KOG2142|consen 666 LGQRRG 671 (728)
T ss_pred hhhhcc
Confidence 988743
No 7
>PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional
Probab=98.63 E-value=1.5e-07 Score=87.85 Aligned_cols=103 Identities=16% Similarity=0.139 Sum_probs=76.3
Q ss_pred CceeeeeHhHHHHHHhHhCCC-CCCcceeceEEEeCCCCCCCCCcceEEEcc-eEEEeeeeCCCcCcCeeeCCCCCCCCC
Q 022041 164 YPFMLLSQGSLDALNKLLKEP-IPINRFRPNILVDGCEPFSEDLWTGIRINN-CTFQGVKLCDRCKVPTINQDTGVAGPE 241 (303)
Q Consensus 164 ~p~~lis~aSl~~l~~~l~~~-v~~~RFRpNIvv~g~~pf~Ed~W~~l~IG~-~~l~~~~~c~RC~~~~vdp~tg~~~~~ 241 (303)
..+++++.++++.++ .++.+ +++..||.||+++|.....-.-=++|+||+ +.|+++.+|..|.-.........
T Consensus 203 RqVsl~~~E~~~~~~-~~g~~~l~pG~fGENLtv~Gidl~~l~iGdrlrIG~~avLeVt~pr~PC~~~~~~l~~~~---- 277 (308)
T PRK14499 203 RQVSLLDISSIKKME-EYGLKGLCFGKFAENITTENLDLQKISLGTKLKIGDNVVLEISQIGKKCHGSGCEIARQV---- 277 (308)
T ss_pred ceEEEcCHHHHHHHH-hcCCcCCCcccccceEEEcCcCHHHCCCCCEEEECCcEEEEEEeCCCCCcCcccchhHhc----
Confidence 469999999999987 45555 899999999999998432221228999999 99999999999975321111100
Q ss_pred hHHHHHHhhcccccCcccccCCccccceeeEEeecCCCCCEEecCCeEEEeE
Q 022041 242 PSETLRQIRSDKVLRPNQKQQGKIYFGQNLVWKDNLSNGKVLKLGDPVFVMR 293 (303)
Q Consensus 242 pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~v~~~~~~G~~I~VGD~V~v~~ 293 (303)
+. ..-+.-|+|+.|. ++| .|++||.|++++
T Consensus 278 --------~~----------~~~~r~G~y~RVl---~~G-~Ir~GD~V~l~~ 307 (308)
T PRK14499 278 --------GV----------CIMPKEGLFAKVL---KGG-KIKPGDIIEILN 307 (308)
T ss_pred --------Cc----------cCcccceEEEEEe---cCe-EEcCCCEEEEcc
Confidence 10 0112369999999 999 999999999875
No 8
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=98.13 E-value=2.2e-05 Score=70.09 Aligned_cols=107 Identities=12% Similarity=0.099 Sum_probs=83.4
Q ss_pred CceeeeeHhHHHHHHhHhCC---CCCCcceeceEEEeCCCCCCCCCc---ceEEEcceEEEeeeeCCCcCcCeeeCCCCC
Q 022041 164 YPFMLLSQGSLDALNKLLKE---PIPINRFRPNILVDGCEPFSEDLW---TGIRINNCTFQGVKLCDRCKVPTINQDTGV 237 (303)
Q Consensus 164 ~p~~lis~aSl~~l~~~l~~---~v~~~RFRpNIvv~g~~pf~Ed~W---~~l~IG~~~l~~~~~c~RC~~~~vdp~tg~ 237 (303)
..+++.+.++.+..++.++. .+..--|==||.++| +.|++- ..++||++.|+|..|+..|--.+. ..|.
T Consensus 55 kAV~~y~~e~y~~w~~~~~~~~~~l~~G~fGENLtv~G---l~e~~v~IGD~~riG~avleVsqpR~PC~kl~~--r~~~ 129 (223)
T PRK11536 55 RALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDG---LTESNVFIGDIFRWGEALIQVTQPRSPCYKLNY--HFDI 129 (223)
T ss_pred ceEEEcCHhHHHHHHHHccccccccCCCCccCCEEecC---cChhhCCccCEEEECCEEEEEecCCCCCCchhh--hccc
Confidence 45899999999999988864 456678999999998 466666 899999999999999999955433 3332
Q ss_pred CCCChHHHHHHhhcccccCcccccCCccccceeeEEeecCCCCCEEecCCeEEEeEecC
Q 022041 238 AGPEPSETLRQIRSDKVLRPNQKQQGKIYFGQNLVWKDNLSNGKVLKLGDPVFVMRKVN 296 (303)
Q Consensus 238 ~~~~pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~v~~~~~~G~~I~VGD~V~v~~~~~ 296 (303)
++..+.+.+. ..-|+|+.|. ++| .|+.||+|+++++.+
T Consensus 130 --~~~~~~~~~~---------------g~~G~Y~RVL---~~G-~V~~GD~v~l~~r~~ 167 (223)
T PRK11536 130 --SDIAQLMQNS---------------GKCGWLYRVI---APG-KVSADAPLELVSRVS 167 (223)
T ss_pred --hhHHHHHHhh---------------CCcEEEEEEE---CCc-EEcCCCEEEEEeCCC
Confidence 3344444332 1459999999 999 999999999999864
No 9
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.10 E-value=1.4e-05 Score=70.34 Aligned_cols=107 Identities=16% Similarity=0.211 Sum_probs=86.2
Q ss_pred ceeeeeHhHHHHHHhHhCCCCCCcceeceEEEeCCCCCCCCCc---ceEEEcceEEEeeeeCCCcCcCeeeCCCCCCCCC
Q 022041 165 PFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLW---TGIRINNCTFQGVKLCDRCKVPTINQDTGVAGPE 241 (303)
Q Consensus 165 p~~lis~aSl~~l~~~l~~~v~~~RFRpNIvv~g~~pf~Ed~W---~~l~IG~~~l~~~~~c~RC~~~~vdp~tg~~~~~ 241 (303)
.+.+.+...+......++..+.+--|+=||.++|. .|.+- .+++||++.|+|..|+.-|.-.+.-.+. ++
T Consensus 56 Av~~y~~ehy~~w~~~lg~~l~pg~fGENltt~Gl---~e~~l~iGdr~riG~allEVSqpR~PC~~l~~~~~~----~~ 128 (210)
T COG2258 56 AVCHYPREHYAAWETLLGRGLQPGAFGENLTTSGL---DEANLCIGDRFRIGEALLEVTQPRKPCSKLNKRFGI----PD 128 (210)
T ss_pred eEEEccHHHHHHHHHHhCCCCCcccccCceeecCc---chhhccccCEEEeccEEEEecCCCCchHHHHHhcCC----cc
Confidence 57889999999999999999999999999999985 45555 7999999999999999999877653221 23
Q ss_pred hHHHHHHhhcccccCcccccCCccccceeeEEeecCCCCCEEecCCeEEEeEecCC
Q 022041 242 PSETLRQIRSDKVLRPNQKQQGKIYFGQNLVWKDNLSNGKVLKLGDPVFVMRKVNS 297 (303)
Q Consensus 242 pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~v~~~~~~G~~I~VGD~V~v~~~~~~ 297 (303)
..+.+.+ ...-|+|+.|. ++| .|+.||++.++.+.+.
T Consensus 129 ~~~~~~~---------------~G~~G~y~RVL---~~G-~v~~gD~l~l~~r~~~ 165 (210)
T COG2258 129 LAKRFQQ---------------TGRTGWYARVL---EEG-KVRAGDPLKLIPRPSP 165 (210)
T ss_pred HHHHhhc---------------cCcccEEEEEc---ccc-eecCCCceEEecCCCC
Confidence 3333222 22679999999 999 9999999999998764
No 10
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=44.71 E-value=71 Score=27.58 Aligned_cols=50 Identities=24% Similarity=0.412 Sum_probs=35.2
Q ss_pred eEEeeeeeeccCC---CCCeeecceeeeeccC-c----ccCceeEEEecCCceeeecCC
Q 022041 5 AKVKSIFVYPIKS---CRGISVCQQAPLTPTG-F----RWDRQWMVINNNGRAYTQRNE 55 (303)
Q Consensus 5 ~~V~~L~iyPIKS---~~g~~v~~~~~l~~~G-l----~~DR~~~i~~~~g~~lt~r~~ 55 (303)
|+=.+|++||-.+ -=..++ +.|++...| | -+||..++++++|-.++....
T Consensus 16 G~T~Ei~~~P~~~~~~~F~wRi-S~A~V~~~g~FS~FpG~~R~l~~L~G~gl~L~~~~~ 73 (184)
T PF05962_consen 16 GTTREIAIYPEGSAKRDFDWRI-SIATVEADGPFSDFPGYDRILTLLEGNGLRLTHDGQ 73 (184)
T ss_dssp EEEEEEEE-SSSCCCCC-SEEE-EEEEE-SSEEE---TT-EEEEEEEESS-EEEEETTC
T ss_pred eEEEEEEEcCCCCccCCceEEE-EEEEEcCCCCCCCCCCCcEEEEEEeCCcEEEecCCC
Confidence 5668999999876 223577 889998888 3 369999999998888877655
No 11
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=33.35 E-value=24 Score=30.02 Aligned_cols=28 Identities=36% Similarity=0.444 Sum_probs=19.6
Q ss_pred CcceeceEEEeCCCC-----CC-----CCCcceEEEcc
Q 022041 187 INRFRPNILVDGCEP-----FS-----EDLWTGIRINN 214 (303)
Q Consensus 187 ~~RFRpNIvv~g~~p-----f~-----Ed~W~~l~IG~ 214 (303)
++|-||||+|.|.+. +. .-..+.|.||+
T Consensus 3 ~~r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd 40 (176)
T KOG3347|consen 3 PERERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISD 40 (176)
T ss_pred hhhcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhh
Confidence 569999999998632 22 22447888887
No 12
>PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional
Probab=25.12 E-value=84 Score=29.64 Aligned_cols=36 Identities=31% Similarity=0.254 Sum_probs=31.2
Q ss_pred CceEEeeeeeeccCCCCCeeecceeee-eccCcccCce
Q 022041 3 AAAKVKSIFVYPIKSCRGISVCQQAPL-TPTGFRWDRQ 39 (303)
Q Consensus 3 ~~~~V~~L~iyPIKS~~g~~v~~~~~l-~~~Gl~~DR~ 39 (303)
+|++|.+|++-|-++..-.++ ++..+ ...|+.+|+.
T Consensus 161 ~~~~VlsI~is~~~gi~K~~v-~~~~~v~~~GieGD~H 197 (308)
T PRK14499 161 KTAKVVSINISRQKGTPKEPV-EEAVLIENHGIEGDAH 197 (308)
T ss_pred CCCEEEEEEeCCCCCccceec-CceEEEccCCCCCCcC
Confidence 578999999999999999999 87655 5789999984
No 13
>TIGR03635 S17_bact 30S ribosomal protein S17. This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17.
Probab=24.24 E-value=68 Score=23.35 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.5
Q ss_pred CEEecCCeEEEeEecC
Q 022041 281 KVLKLGDPVFVMRKVN 296 (303)
Q Consensus 281 ~~I~VGD~V~v~~~~~ 296 (303)
...++||.|.|.+.+|
T Consensus 47 ~~~k~GD~V~I~ecrP 62 (71)
T TIGR03635 47 NECKVGDVVRIIETRP 62 (71)
T ss_pred CCCCCCCEEEEEEcCC
Confidence 3799999999988665
No 14
>PF14952 zf-tcix: Putative treble-clef, zinc-finger, Zn-binding
Probab=23.63 E-value=22 Score=23.41 Aligned_cols=19 Identities=21% Similarity=0.676 Sum_probs=16.3
Q ss_pred EcceEEEeeeeCCCcCcCe
Q 022041 212 INNCTFQGVKLCDRCKVPT 230 (303)
Q Consensus 212 IG~~~l~~~~~c~RC~~~~ 230 (303)
||-.+++.++.|+.|...|
T Consensus 3 l~k~TlRGirkCp~CGt~N 21 (44)
T PF14952_consen 3 LGKPTLRGIRKCPKCGTYN 21 (44)
T ss_pred cchhhHhccccCCcCcCcc
Confidence 5667789999999999987
No 15
>CHL00142 rps17 ribosomal protein S17; Validated
Probab=23.31 E-value=69 Score=24.19 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=14.2
Q ss_pred CCCEEecCCeEEEeEecC
Q 022041 279 NGKVLKLGDPVFVMRKVN 296 (303)
Q Consensus 279 ~G~~I~VGD~V~v~~~~~ 296 (303)
+....++||.|.+.+.+|
T Consensus 47 e~n~~~~GD~V~I~e~RP 64 (84)
T CHL00142 47 EENECNIGDQVLIEETRP 64 (84)
T ss_pred CCCCCCCCCEEEEEEcCC
Confidence 334799999999988664
No 16
>COG4110 Uncharacterized protein involved in stress response [General function prediction only]
Probab=22.56 E-value=1.9e+02 Score=24.70 Aligned_cols=38 Identities=16% Similarity=0.401 Sum_probs=28.0
Q ss_pred eeEEEecCCcccccCCCCCCCceEEEEeCCCceEEEeccCC
Q 022041 59 ALVETELPNEAFLEGWEPTGRSFMVIRAPGMQALKISLSKP 99 (303)
Q Consensus 59 ~~i~~~~~~~~~~~~~~~~~~~~l~l~~p~~~~l~i~l~~~ 99 (303)
.||-+.|-.+ ...|... ++.++|..|+.+++++.|+..
T Consensus 114 vLi~aFIYEG--~~~w~~~-dGvvTik~P~~~~I~~qm~e~ 151 (200)
T COG4110 114 VLIYAFIYEG--VPSWDKT-DGVVTIKVPDQPPIETQLTEG 151 (200)
T ss_pred eeeEEEEecC--CcCcccc-CCEEEEecCCCCceEEEccCC
Confidence 6677766332 2346665 689999999999999999754
No 17
>PRK05610 rpsQ 30S ribosomal protein S17; Reviewed
Probab=21.82 E-value=78 Score=23.85 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=14.2
Q ss_pred CCCEEecCCeEEEeEecC
Q 022041 279 NGKVLKLGDPVFVMRKVN 296 (303)
Q Consensus 279 ~G~~I~VGD~V~v~~~~~ 296 (303)
+....++||.|.+.+.+|
T Consensus 50 ~~n~~k~GD~V~I~e~rP 67 (84)
T PRK05610 50 ENNEAKIGDVVRIMETRP 67 (84)
T ss_pred CCCCCCCCCEEEEEEccc
Confidence 334799999999988655
No 18
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=21.77 E-value=51 Score=22.77 Aligned_cols=13 Identities=38% Similarity=0.491 Sum_probs=10.2
Q ss_pred eeeeCCCcCcCee
Q 022041 219 GVKLCDRCKVPTI 231 (303)
Q Consensus 219 ~~~~c~RC~~~~v 231 (303)
+-..|+||..+|-
T Consensus 23 le~KCPrCK~vN~ 35 (60)
T COG4416 23 LEKKCPRCKEVNE 35 (60)
T ss_pred eeecCCccceeee
Confidence 4568999998863
No 19
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=20.37 E-value=64 Score=24.40 Aligned_cols=26 Identities=27% Similarity=0.120 Sum_probs=14.1
Q ss_pred cccceeeEEeecCCCCCEEecCCeEEEeE
Q 022041 265 IYFGQNLVWKDNLSNGKVLKLGDPVFVMR 293 (303)
Q Consensus 265 ~~fG~~~~v~~~~~~G~~I~VGD~V~v~~ 293 (303)
..+|+|.... +....++-||.|+|-.
T Consensus 47 ~~vGIfGk~~---~~d~~L~~GDRVEIYR 72 (84)
T PF03658_consen 47 NKVGIFGKLV---KLDTVLRDGDRVEIYR 72 (84)
T ss_dssp SEEEEEE-S-----TT-B--TT-EEEEE-
T ss_pred ceeeeeeeEc---CCCCcCCCCCEEEEec
Confidence 3578877776 5556899999999965
Done!