Query 022041
Match_columns 303
No_of_seqs 131 out of 1146
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 13:06:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2exn_A Hypothetical protein BO 100.0 1.6E-33 5.6E-38 232.1 10.5 124 7-150 1-127 (136)
2 1oru_A YUAD protein; structura 99.8 1.2E-19 4E-24 158.0 15.4 116 163-296 66-186 (195)
3 1o65_A Hypothetical protein YI 99.3 3.5E-12 1.2E-16 114.2 10.5 106 164-294 67-177 (246)
4 3esg_A HUTD, putative uncharac 25.2 1.8E+02 0.006 24.3 6.7 49 5-54 29-84 (193)
5 1qd7_I S17 ribosomal protein; 22.6 45 0.0015 24.4 2.1 16 281-296 48-63 (89)
6 2cr8_A MDM4 protein; ZF-ranbp 17.9 15 0.0005 24.1 -1.2 32 201-232 6-37 (53)
7 2vqe_Q 30S ribosomal protein S 17.1 69 0.0024 24.1 2.2 16 281-296 49-64 (105)
8 3bbn_Q Ribosomal protein S17; 16.6 60 0.0021 25.8 1.8 18 278-296 104-121 (142)
9 3v2d_1 50S ribosomal protein L 16.4 56 0.0019 24.3 1.5 11 186-196 38-48 (98)
10 1v1c_A Obscurin; muscle, sarco 15.8 78 0.0027 22.1 2.0 31 266-296 4-39 (71)
No 1
>2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1
Probab=100.00 E-value=1.6e-33 Score=232.12 Aligned_cols=124 Identities=27% Similarity=0.473 Sum_probs=110.0
Q ss_pred EeeeeeeccCCCCCeeecceeeeeccCcccCceeEEEecCCceeeecCCcceeeEEEecCCcccccCCCCCCCceEEEEe
Q 022041 7 VKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPTGRSFMVIRA 86 (303)
Q Consensus 7 V~~L~iyPIKS~~g~~v~~~~~l~~~Gl~~DR~~~i~~~~g~~lt~r~~P~l~~i~~~~~~~~~~~~~~~~~~~~l~l~~ 86 (303)
|++|||||||||+|++| +++. .|||+|||+|++|+|+|||++|+|++|++.++. +.|+|++
T Consensus 1 v~~L~iYPIKSc~g~~l-~~a~------~~DR~wmlvd~~G~~lt~r~~P~Lali~~~~~~------------~~L~l~~ 61 (136)
T 2exn_A 1 MSTTAYQPIAECGATTQ-SEAA------AYQKRWLVANDAGQWLNRDLCPRLAEVSVELRM------------GYLVLKA 61 (136)
T ss_dssp CCCCCEEEETTTEEECC-GGGG------GTCCSEEEEETTSCEECTTTCGGGGCCEEEECS------------SEEEEEC
T ss_pred CceEEEeccccCCceec-CccC------ccCCcEEEEeCCCCEEEccCCccccEEEEEecC------------CEEEEEe
Confidence 57999999999999999 9987 999999999999999999999999999999863 4799999
Q ss_pred CCCceEEEeccCCC---CCccceEEecccccccccchHHHHHHHhhhCCCeEEEEecCCCCCCCCCc
Q 022041 87 PGMQALKISLSKPR---DIADGVSVWEWCGSALAEGAEASNWFTNYLGKPSRLVRYNAESETRPVDP 150 (303)
Q Consensus 87 p~~~~l~i~l~~~~---~~~~~~~~~~~~~~~~~~g~~~~~wlS~~lg~~~rLv~~~~~~~~r~~~~ 150 (303)
||++++.|++.+.. .....++||++.+++++||+++++|||+|||++|+|+++++... |..++
T Consensus 62 pg~~~l~vpl~~~~~~~~~~~~v~vw~~~~~a~d~g~~~~~W~S~~Lg~p~rLv~~~~~~~-R~~~~ 127 (136)
T 2exn_A 62 PGMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNHAGVPCRILKVHPDMA-EVRWP 127 (136)
T ss_dssp SSSCEEEEESSCCCSSCSCEEEEEETTEEEEEEECCHHHHHHHHHHTCSSEEEEEECTTTC-CCCCC
T ss_pred CCCceEEEECCCccccccCceeEEEeCCcceeEeccHHHHHHHHHHhCCCeEEEEcCCCCc-cccCc
Confidence 99999999997653 13457899999999999999999999999999999999987654 43433
No 2
>1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} SCOP: b.58.1.2
Probab=99.82 E-value=1.2e-19 Score=157.98 Aligned_cols=116 Identities=16% Similarity=0.098 Sum_probs=94.4
Q ss_pred CCceeeeeHhHHHHHHhHhCCC-CCCcceeceEEEeCC-CCCCCCCcceEEEcc-eEEEeeeeCCCcCcC--eeeCCCCC
Q 022041 163 CYPFMLLSQGSLDALNKLLKEP-IPINRFRPNILVDGC-EPFSEDLWTGIRINN-CTFQGVKLCDRCKVP--TINQDTGV 237 (303)
Q Consensus 163 ~~p~~lis~aSl~~l~~~l~~~-v~~~RFRpNIvv~g~-~pf~Ed~W~~l~IG~-~~l~~~~~c~RC~~~--~vdp~tg~ 237 (303)
..+++|++.+|++++++.++.+ +++.+||+||+++|. ..++++-|++|+||+ +.|+++.+|.||..+ ++++.++.
T Consensus 66 ~r~V~l~~~e~~~~~~~~~g~~~l~~g~fgeNl~v~Gi~~~~~l~iG~~l~iG~~a~leVt~~~~pC~~~~~~i~~~~~~ 145 (195)
T 1oru_A 66 RRQISIVSIEECNEIALKMGVPRILPEWLGANVAVSGMPDLTSLKEGSRIIFPSGAALLCEGENDPCIQPGEVIQSYYPD 145 (195)
T ss_dssp CCCEEEEEHHHHHHHHHHHTCSCCCGGGGTCSEEEESCTTGGGCCTTCEEECTTSCEEEEEEECCCCHHHHHHHHHHSTT
T ss_pred CceEEECCHHHHHHHHHHcCCCCCCcccccCCEEEeCCCChhhCCCCCEEEECCCEEEEEeeccCCCCCCccccchhccc
Confidence 3579999999999999999876 999999999999998 666666689999997 999999999999984 45654421
Q ss_pred CCCChHHHHHHhhcccccCcccccCCccccceeeEEeecCCCCCEEecCCeEEEeEecC
Q 022041 238 AGPEPSETLRQIRSDKVLRPNQKQQGKIYFGQNLVWKDNLSNGKVLKLGDPVFVMRKVN 296 (303)
Q Consensus 238 ~~~~pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~v~~~~~~G~~I~VGD~V~v~~~~~ 296 (303)
.+...+.+.+.. ...||+|+.|. ++| .|++||.|+++.+..
T Consensus 146 -~~g~~~~~~~~~-------------~~r~G~~~rVl---~~G-~I~~GD~v~l~~~~~ 186 (195)
T 1oru_A 146 -QPKLASAFVRHA-------------LGIRGIVCIVE---RPG-AVYTGDEIEVHSYQR 186 (195)
T ss_dssp -STTHHHHHHHHS-------------TTSSCEEEEEE---ECE-EEETTCEEEEEEEC-
T ss_pred -ccchHHHHHhhc-------------cCCccEEEEEe---cCc-eEcCCCEEEEEeCCC
Confidence 144556665532 23699999999 899 999999999997654
No 3
>1o65_A Hypothetical protein YIIM; structural genomics, unknown function; 2.33A {Escherichia coli} SCOP: b.58.1.2 PDB: 1o67_A
Probab=99.34 E-value=3.5e-12 Score=114.16 Aligned_cols=106 Identities=10% Similarity=0.111 Sum_probs=89.4
Q ss_pred CceeeeeHhHHHHHHhHhCC---CCCCcceeceEEEeCCCCCCCCCc--ceEEEcceEEEeeeeCCCcCcCeeeCCCCCC
Q 022041 164 YPFMLLSQGSLDALNKLLKE---PIPINRFRPNILVDGCEPFSEDLW--TGIRINNCTFQGVKLCDRCKVPTINQDTGVA 238 (303)
Q Consensus 164 ~p~~lis~aSl~~l~~~l~~---~v~~~RFRpNIvv~g~~pf~Ed~W--~~l~IG~~~l~~~~~c~RC~~~~vdp~tg~~ 238 (303)
..+++++.+|++.+++.++. .+++.+||-||+++|.. +++-| ++++||++.|+++.+|.+|.-++.. +|.
T Consensus 67 rqV~l~~~E~~~~~~~~~g~~~~~l~pg~fgENLtv~Gl~--~~~l~iG~rlrIG~avLeVTq~r~PC~~~~~~--~g~- 141 (246)
T 1o65_A 67 RALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDGLT--ESNVYMGDIFRWGEALIQVSQPRSPCYKLNYH--FDI- 141 (246)
T ss_dssp GSEEEEETHHHHHHHHHCGGGGGGCSTTTTCCSEEESSCC--TTTCBTTCEEEETTEEEEEEEECCCCTHHHHH--TTC-
T ss_pred CeEEECCHHHHHHHHHHhCCCcccCCcccccCCEEECCcc--hhhCCCCCEEEECCEEEEEEeCcCccHhHHHH--hcC-
Confidence 45999999999999998876 48999999999999974 44557 8999999999999999999988765 333
Q ss_pred CCChHHHHHHhhcccccCcccccCCccccceeeEEeecCCCCCEEecCCeEEEeEe
Q 022041 239 GPEPSETLRQIRSDKVLRPNQKQQGKIYFGQNLVWKDNLSNGKVLKLGDPVFVMRK 294 (303)
Q Consensus 239 ~~~pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~v~~~~~~G~~I~VGD~V~v~~~ 294 (303)
++..+.+.+. ..+|+|+.|. ++| .|++||.|+++++
T Consensus 142 -~~~~~~~~~~---------------~r~G~y~rVl---~~G-~V~~GD~v~l~~r 177 (246)
T 1o65_A 142 -SDIAQLMQNT---------------GKVGWLYSVI---APG-KVSADAPLELVSR 177 (246)
T ss_dssp -TTHHHHHHHH---------------TCCCEEEEEE---ECE-EEETTSCEEEEEC
T ss_pred -cCHHHHHhhC---------------CCcEEEEEEe---eCc-EEcCCCEEEEecC
Confidence 3555666553 2689999999 899 9999999999987
No 4
>3esg_A HUTD, putative uncharacterized protein; beta barrel, unknown function; 1.80A {Pseudomonas fluorescens} SCOP: b.82.1.0
Probab=25.24 E-value=1.8e+02 Score=24.30 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=38.0
Q ss_pred eEEeeeeeeccCCCCC--eeecceeeeeccC-c----ccCceeEEEecCCceeeecC
Q 022041 5 AKVKSIFVYPIKSCRG--ISVCQQAPLTPTG-F----RWDRQWMVINNNGRAYTQRN 54 (303)
Q Consensus 5 ~~V~~L~iyPIKS~~g--~~v~~~~~l~~~G-l----~~DR~~~i~~~~g~~lt~r~ 54 (303)
|+=.+|++||-.+.+. -++ +.|++...| | -+||..++++++|-.++...
T Consensus 29 G~TrEI~~~P~~~~~~F~wRi-SiA~V~~~g~FS~FpG~dR~l~lL~G~gl~L~~~g 84 (193)
T 3esg_A 29 GSTEEITRDAGTGLEGFGWRL-SIADIGESGGFSSFAGYQRVITVIQGAGMVLTVDG 84 (193)
T ss_dssp EEEEEEEECCCBTTTBCSEEE-EEEEECSSEECCCCTTCEEEEEEEESSCEEEEETT
T ss_pred eEEEEEEEcCCCcCCCceEEE-EEEEEcCCCCCCCCCCceEEEEEEcCCcEEEEeCC
Confidence 5667899999865443 677 889999888 3 36999999998887777543
No 5
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=22.61 E-value=45 Score=24.43 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=13.3
Q ss_pred CEEecCCeEEEeEecC
Q 022041 281 KVLKLGDPVFVMRKVN 296 (303)
Q Consensus 281 ~~I~VGD~V~v~~~~~ 296 (303)
...++||.|.|.+.+|
T Consensus 48 n~~k~GD~V~I~E~RP 63 (89)
T 1qd7_I 48 NEAKVGDIVKIMETRP 63 (89)
T ss_pred cCCCCCCEEEEEEccc
Confidence 3899999999988654
No 6
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=17.87 E-value=15 Score=24.13 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=21.1
Q ss_pred CCCCCCcceEEEcceEEEeeeeCCCcCcCeee
Q 022041 201 PFSEDLWTGIRINNCTFQGVKLCDRCKVPTIN 232 (303)
Q Consensus 201 pf~Ed~W~~l~IG~~~l~~~~~c~RC~~~~vd 232 (303)
.=.||.|+-.+-+...-=..+.|.||-..--|
T Consensus 6 ~~~eD~WkC~~C~k~N~Pl~ryC~rCwaLRk~ 37 (53)
T 2cr8_A 6 SGSEDEWQCTECKKFNSPSKRYCFRCWALRKD 37 (53)
T ss_dssp SCCSCCEECSSSCCEECSSCCBCTTTCCBCCC
T ss_pred CCCcceeecccccccCCCccchhHHHHHhhcc
Confidence 34688897666654333356789999876544
No 7
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Probab=17.15 E-value=69 Score=24.14 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.2
Q ss_pred CEEecCCeEEEeEecC
Q 022041 281 KVLKLGDPVFVMRKVN 296 (303)
Q Consensus 281 ~~I~VGD~V~v~~~~~ 296 (303)
...++||.|.|.+.+|
T Consensus 49 n~~k~GD~V~I~E~RP 64 (105)
T 2vqe_Q 49 EKYKLGDVVEIIESRP 64 (105)
T ss_dssp CCCCTTCEEEEEEEEE
T ss_pred CCCCCCCEEEEEEccc
Confidence 3799999999988654
No 8
>3bbn_Q Ribosomal protein S17; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=16.64 E-value=60 Score=25.85 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=14.5
Q ss_pred CCCCEEecCCeEEEeEecC
Q 022041 278 SNGKVLKLGDPVFVMRKVN 296 (303)
Q Consensus 278 ~~G~~I~VGD~V~v~~~~~ 296 (303)
... ..++||.|.|.+.+|
T Consensus 104 e~n-~~kvGD~V~I~E~RP 121 (142)
T 3bbn_Q 104 PDN-QFKVGDVVRLEKSRP 121 (142)
T ss_dssp TTC-CCCTTEEEEEEECCC
T ss_pred CCC-CCCCCCEEEEEEccC
Confidence 344 899999999998654
No 9
>3v2d_1 50S ribosomal protein L28; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_1 2v47_1 2v49_1 2wdi_1 2wdj_1 2wdl_1 2wdn_1 2wh2_1 2wh4_1 2wrj_1 2wrl_1 2wro_1 2wrr_1 2x9s_1 2x9u_1 2xqe_1 2xtg_1 2xux_1 2y0v_1 2y0x_1 ...
Probab=16.43 E-value=56 Score=24.34 Aligned_cols=11 Identities=27% Similarity=0.299 Sum_probs=9.0
Q ss_pred CCcceeceEEE
Q 022041 186 PINRFRPNILV 196 (303)
Q Consensus 186 ~~~RFRpNIvv 196 (303)
.-++|+|||-=
T Consensus 38 TkR~f~PNLqk 48 (98)
T 3v2d_1 38 SKRRQYPNLQK 48 (98)
T ss_dssp EEEEECCCEEE
T ss_pred ccceeccceEE
Confidence 57899999973
No 10
>1v1c_A Obscurin; muscle, sarcomere, adapter, myogenesis, SH3-domain; NMR {Homo sapiens}
Probab=15.78 E-value=78 Score=22.13 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=19.8
Q ss_pred ccceeeEEeec--CCCC---CEEecCCeEEEeEecC
Q 022041 266 YFGQNLVWKDN--LSNG---KVLKLGDPVFVMRKVN 296 (303)
Q Consensus 266 ~fG~~~~v~~~--~~~G---~~I~VGD~V~v~~~~~ 296 (303)
.|=+|.++.+- .+.+ ..++.||.|+|++...
T Consensus 4 ~~~~Y~v~aDy~p~~~~~~ei~lk~Gd~VeVl~k~~ 39 (71)
T 1v1c_A 4 IFDIYVVTADYLPLGAEQDAITLREGQYVEVLDAAH 39 (71)
T ss_dssp CCCEEEESSCBCCCSCCTTBCCBCTTCEEEEEEEEE
T ss_pred EeeEEEEEecccccCCCcceeeecCCCEEEEEEcCC
Confidence 56667655431 1222 3599999999998654
Done!