Query 022042
Match_columns 303
No_of_seqs 335 out of 1851
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:35:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022042.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022042hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02674 adenylate kinase 100.0 1.2E-38 2.5E-43 276.6 24.8 203 84-287 31-243 (244)
2 PLN02459 probable adenylate ki 100.0 2.6E-36 5.5E-41 263.1 24.1 206 83-289 28-251 (261)
3 TIGR01351 adk adenylate kinase 100.0 6.4E-36 1.4E-40 257.1 23.4 201 87-287 2-209 (210)
4 PRK14526 adenylate kinase; Pro 100.0 1.3E-35 2.8E-40 254.1 22.8 203 85-289 1-209 (211)
5 PRK00279 adk adenylate kinase; 100.0 8.4E-35 1.8E-39 251.1 23.8 204 85-289 1-214 (215)
6 PRK14529 adenylate kinase; Pro 100.0 9.5E-35 2.1E-39 249.4 20.9 201 85-287 1-222 (223)
7 PTZ00088 adenylate kinase 1; P 100.0 3.5E-34 7.5E-39 247.9 23.4 204 82-286 4-228 (229)
8 PLN02842 nucleotide kinase 100.0 3.6E-34 7.8E-39 269.2 23.5 208 89-296 2-209 (505)
9 PRK14530 adenylate kinase; Pro 100.0 1.2E-32 2.5E-37 237.7 23.7 199 85-289 4-213 (215)
10 KOG3079 Uridylate kinase/adeny 100.0 1.3E-32 2.8E-37 223.1 21.6 185 81-289 5-193 (195)
11 PRK13808 adenylate kinase; Pro 100.0 1E-31 2.3E-36 241.8 24.2 190 85-293 1-197 (333)
12 KOG3078 Adenylate kinase [Nucl 100.0 2.9E-31 6.4E-36 225.5 19.7 213 83-297 14-232 (235)
13 PRK14528 adenylate kinase; Pro 100.0 4.1E-30 9E-35 216.8 23.1 179 84-286 1-185 (186)
14 PRK14532 adenylate kinase; Pro 100.0 1.3E-29 2.9E-34 214.2 23.5 180 85-288 1-186 (188)
15 PRK14531 adenylate kinase; Pro 100.0 1.4E-29 3.1E-34 213.1 23.2 174 85-287 3-182 (183)
16 cd01428 ADK Adenylate kinase ( 100.0 8.6E-30 1.9E-34 216.0 20.4 189 86-279 1-194 (194)
17 PRK14527 adenylate kinase; Pro 100.0 7.1E-29 1.5E-33 210.3 23.1 182 81-287 3-190 (191)
18 PLN02200 adenylate kinase fami 100.0 1.1E-28 2.4E-33 214.8 23.8 185 82-293 41-228 (234)
19 PRK02496 adk adenylate kinase; 100.0 2.4E-28 5.2E-33 205.8 24.4 176 84-287 1-182 (184)
20 TIGR01359 UMP_CMP_kin_fam UMP- 100.0 1.7E-28 3.6E-33 206.4 22.5 177 86-287 1-182 (183)
21 TIGR01360 aden_kin_iso1 adenyl 100.0 5E-27 1.1E-31 198.0 23.9 183 84-289 3-187 (188)
22 COG0563 Adk Adenylate kinase a 100.0 3E-27 6.5E-32 197.0 19.8 173 85-287 1-177 (178)
23 PF00406 ADK: Adenylate kinase 99.9 9.3E-27 2E-31 190.0 17.5 144 89-265 1-148 (151)
24 PRK01184 hypothetical protein; 99.8 8.6E-18 1.9E-22 141.4 21.1 176 84-293 1-182 (184)
25 PRK13973 thymidylate kinase; P 99.8 8.1E-17 1.7E-21 138.7 21.7 179 83-292 2-209 (213)
26 PRK13974 thymidylate kinase; P 99.7 4.5E-17 9.9E-22 140.1 15.4 179 84-294 3-211 (212)
27 COG0125 Tmk Thymidylate kinase 99.7 8.8E-17 1.9E-21 136.8 16.6 178 83-292 2-206 (208)
28 PRK08356 hypothetical protein; 99.7 9E-17 1.9E-21 136.5 14.9 174 84-290 5-193 (195)
29 PRK00081 coaE dephospho-CoA ki 99.7 1.2E-16 2.6E-21 135.7 14.6 165 84-289 2-193 (194)
30 PRK06217 hypothetical protein; 99.7 3.5E-16 7.5E-21 131.6 16.5 169 84-288 1-178 (183)
31 PRK03839 putative kinase; Prov 99.7 3.7E-16 8.1E-21 131.0 16.6 151 85-290 1-154 (180)
32 COG0703 AroK Shikimate kinase 99.7 7.3E-16 1.6E-20 126.0 16.6 166 84-291 2-170 (172)
33 PRK14734 coaE dephospho-CoA ki 99.7 4.9E-16 1.1E-20 132.4 16.1 167 84-292 1-197 (200)
34 PRK14730 coaE dephospho-CoA ki 99.7 6.9E-16 1.5E-20 131.0 16.4 163 85-287 2-192 (195)
35 COG1102 Cmk Cytidylate kinase 99.7 4.4E-15 9.6E-20 118.6 19.0 166 85-293 1-176 (179)
36 COG0237 CoaE Dephospho-CoA kin 99.7 1.4E-15 3E-20 128.9 15.5 169 84-293 2-196 (201)
37 PRK13949 shikimate kinase; Pro 99.7 3.8E-15 8.3E-20 123.6 17.7 161 85-286 2-168 (169)
38 PLN02924 thymidylate kinase 99.7 2.6E-15 5.7E-20 129.5 16.7 175 82-292 14-206 (220)
39 PRK14731 coaE dephospho-CoA ki 99.7 1.2E-15 2.6E-20 130.9 14.2 171 83-292 4-205 (208)
40 PTZ00451 dephospho-CoA kinase; 99.7 2.8E-15 6.2E-20 130.7 16.5 170 84-293 1-211 (244)
41 PRK00698 tmk thymidylate kinas 99.7 2.5E-15 5.5E-20 128.2 15.8 176 83-291 2-204 (205)
42 PLN02422 dephospho-CoA kinase 99.7 2.2E-15 4.8E-20 130.2 15.4 167 85-291 2-196 (232)
43 PRK08233 hypothetical protein; 99.7 1.8E-15 3.9E-20 126.7 12.7 169 83-289 2-177 (182)
44 PRK14733 coaE dephospho-CoA ki 99.6 1.3E-14 2.9E-19 123.2 17.2 168 84-291 6-200 (204)
45 PRK08118 topology modulation p 99.6 2.7E-15 5.8E-20 124.3 12.4 100 84-210 1-101 (167)
46 PRK04182 cytidylate kinase; Pr 99.6 2.3E-14 5E-19 119.7 18.2 113 85-209 1-113 (180)
47 PRK13975 thymidylate kinase; P 99.6 6.8E-14 1.5E-18 118.7 20.8 170 85-291 3-192 (196)
48 cd01672 TMPK Thymidine monopho 99.6 2.3E-14 4.9E-19 121.4 17.8 171 85-288 1-199 (200)
49 PRK13946 shikimate kinase; Pro 99.6 3E-14 6.6E-19 119.9 17.9 171 83-295 9-182 (184)
50 PRK13947 shikimate kinase; Pro 99.6 4.4E-14 9.5E-19 117.3 18.2 110 85-209 2-115 (171)
51 PRK03731 aroL shikimate kinase 99.6 3.8E-14 8.2E-19 117.8 17.7 164 85-289 3-170 (171)
52 TIGR00152 dephospho-CoA kinase 99.6 5.6E-15 1.2E-19 124.8 11.9 160 86-284 1-187 (188)
53 PRK04040 adenylate kinase; Pro 99.6 6.6E-14 1.4E-18 118.1 18.4 173 84-287 2-187 (188)
54 COG1936 Predicted nucleotide k 99.6 3.5E-14 7.6E-19 115.0 15.8 155 85-289 1-156 (180)
55 PRK00625 shikimate kinase; Pro 99.6 9.1E-14 2E-18 115.5 18.6 115 85-209 1-117 (173)
56 PRK13948 shikimate kinase; Pro 99.6 7.9E-14 1.7E-18 116.7 18.2 165 83-291 9-177 (182)
57 PRK14732 coaE dephospho-CoA ki 99.6 3.5E-14 7.6E-19 120.5 15.4 167 86-293 1-194 (196)
58 TIGR00041 DTMP_kinase thymidyl 99.6 2E-14 4.4E-19 121.9 13.5 166 84-283 3-195 (195)
59 TIGR02173 cyt_kin_arch cytidyl 99.6 2.1E-13 4.5E-18 113.0 18.6 113 85-209 1-113 (171)
60 PRK00131 aroK shikimate kinase 99.6 1.7E-13 3.6E-18 113.8 18.0 168 82-291 2-173 (175)
61 PRK13976 thymidylate kinase; P 99.6 4.7E-14 1E-18 120.8 15.0 173 85-294 1-206 (209)
62 PLN02199 shikimate kinase 99.6 3.7E-13 8.1E-18 119.2 20.9 182 83-300 101-299 (303)
63 KOG3220 Similar to bacterial d 99.6 1.3E-13 2.8E-18 113.9 16.0 169 84-292 1-197 (225)
64 PRK07933 thymidylate kinase; V 99.6 8.8E-14 1.9E-18 119.7 15.8 177 85-287 1-211 (213)
65 KOG3347 Predicted nucleotide k 99.6 1.4E-13 3.1E-18 108.4 14.6 108 85-210 8-115 (176)
66 PF01121 CoaE: Dephospho-CoA k 99.6 2.8E-14 6.1E-19 119.2 10.8 153 85-278 1-180 (180)
67 PRK05057 aroK shikimate kinase 99.6 4.2E-13 9.1E-18 111.7 17.6 162 84-288 4-170 (172)
68 PRK03333 coaE dephospho-CoA ki 99.5 1E-13 2.2E-18 129.8 14.4 168 84-292 1-195 (395)
69 cd02022 DPCK Dephospho-coenzym 99.5 4.7E-14 1E-18 118.2 10.1 116 86-209 1-143 (179)
70 PHA02530 pseT polynucleotide k 99.5 5.2E-14 1.1E-18 127.4 10.8 161 84-278 2-171 (300)
71 PRK06762 hypothetical protein; 99.5 2.5E-13 5.4E-18 112.3 13.4 156 84-287 2-162 (166)
72 COG3265 GntK Gluconate kinase 99.5 1.2E-13 2.5E-18 108.9 10.6 156 90-289 1-159 (161)
73 COG1428 Deoxynucleoside kinase 99.5 7.6E-14 1.6E-18 116.8 9.9 31 83-113 3-33 (216)
74 PF02223 Thymidylate_kin: Thym 99.5 1E-13 2.2E-18 116.8 10.8 160 89-283 1-186 (186)
75 KOG3354 Gluconate kinase [Carb 99.5 2.2E-13 4.8E-18 107.9 10.4 120 84-213 12-143 (191)
76 PRK08154 anaerobic benzoate ca 99.5 3.2E-12 7E-17 116.1 18.6 168 83-292 132-304 (309)
77 PRK12339 2-phosphoglycerate ki 99.5 3.7E-12 8.1E-17 108.0 15.9 124 83-209 2-141 (197)
78 cd02030 NDUO42 NADH:Ubiquinone 99.5 2.2E-12 4.7E-17 111.6 14.6 124 86-209 1-164 (219)
79 PF01202 SKI: Shikimate kinase 99.4 3.6E-12 7.9E-17 104.6 14.8 154 93-288 1-158 (158)
80 PRK14021 bifunctional shikimat 99.4 5.4E-12 1.2E-16 122.7 18.0 166 85-289 7-176 (542)
81 TIGR01313 therm_gnt_kin carboh 99.4 2.6E-12 5.6E-17 105.9 13.6 157 87-288 1-162 (163)
82 PRK10078 ribose 1,5-bisphospho 99.4 1.5E-12 3.2E-17 109.8 12.1 162 85-290 3-177 (186)
83 COG0283 Cmk Cytidylate kinase 99.4 2.3E-12 5E-17 108.2 12.6 38 85-122 5-42 (222)
84 PF13671 AAA_33: AAA domain; P 99.4 1.7E-12 3.6E-17 104.3 11.3 114 86-210 1-120 (143)
85 PRK07261 topology modulation p 99.4 6.4E-13 1.4E-17 110.5 8.7 101 85-210 1-101 (171)
86 smart00072 GuKc Guanylate kina 99.4 2.6E-12 5.7E-17 108.1 10.4 164 84-289 2-182 (184)
87 cd00464 SK Shikimate kinase (S 99.4 9.2E-12 2E-16 101.3 13.2 109 87-209 2-113 (154)
88 cd00227 CPT Chloramphenicol (C 99.4 1.6E-11 3.4E-16 102.5 14.4 124 84-209 2-132 (175)
89 KOG3327 Thymidylate kinase/ade 99.4 1.6E-11 3.5E-16 100.2 13.7 176 82-294 3-200 (208)
90 PRK05480 uridine/cytidine kina 99.4 1E-11 2.2E-16 106.6 13.2 39 82-120 4-45 (209)
91 TIGR03574 selen_PSTK L-seryl-t 99.4 1E-11 2.2E-16 109.5 13.4 109 86-209 1-117 (249)
92 cd01673 dNK Deoxyribonucleosid 99.3 2.3E-11 5E-16 103.0 13.8 117 86-209 1-146 (193)
93 PRK13477 bifunctional pantoate 99.3 2E-11 4.3E-16 116.7 14.2 41 82-122 282-322 (512)
94 PRK05541 adenylylsulfate kinas 99.3 1.1E-11 2.5E-16 103.4 10.1 109 81-207 4-121 (176)
95 PRK14738 gmk guanylate kinase; 99.3 9.5E-12 2.1E-16 106.6 9.7 166 82-290 11-195 (206)
96 PRK13951 bifunctional shikimat 99.3 8.7E-11 1.9E-15 112.7 17.1 109 85-208 1-112 (488)
97 PRK14737 gmk guanylate kinase; 99.3 1.3E-11 2.9E-16 103.9 10.0 163 82-288 2-183 (186)
98 cd02020 CMPK Cytidine monophos 99.3 2.5E-11 5.3E-16 97.8 10.0 103 86-208 1-103 (147)
99 PRK09825 idnK D-gluconate kina 99.3 6.9E-11 1.5E-15 98.7 13.0 163 84-293 3-172 (176)
100 COG2019 AdkA Archaeal adenylat 99.3 5.6E-10 1.2E-14 90.0 17.5 167 84-288 4-187 (189)
101 TIGR02322 phosphon_PhnN phosph 99.3 2.6E-10 5.6E-15 95.3 16.1 161 85-288 2-177 (179)
102 cd02021 GntK Gluconate kinase 99.3 5E-11 1.1E-15 96.7 11.1 114 86-209 1-119 (150)
103 PRK00023 cmk cytidylate kinase 99.3 3.8E-10 8.2E-15 97.9 16.6 40 83-122 3-42 (225)
104 COG0572 Udk Uridine kinase [Nu 99.2 1E-10 2.3E-15 99.2 12.4 122 82-209 6-149 (218)
105 COG4088 Predicted nucleotide k 99.2 1.2E-10 2.7E-15 96.9 11.6 114 84-209 1-123 (261)
106 TIGR00017 cmk cytidylate kinas 99.2 3.7E-10 8.1E-15 97.3 15.1 38 85-122 3-40 (217)
107 COG0194 Gmk Guanylate kinase [ 99.2 3.5E-10 7.5E-15 93.2 13.8 180 83-290 3-183 (191)
108 PRK06547 hypothetical protein; 99.2 4.9E-11 1.1E-15 99.1 8.8 124 81-209 12-139 (172)
109 PRK00300 gmk guanylate kinase; 99.2 1E-09 2.2E-14 93.8 17.1 167 82-290 3-185 (205)
110 PF13207 AAA_17: AAA domain; P 99.2 4.9E-12 1.1E-16 98.7 2.4 108 86-208 1-110 (121)
111 TIGR00235 udk uridine kinase. 99.2 2.9E-10 6.2E-15 97.5 13.3 39 81-119 3-44 (207)
112 PRK09518 bifunctional cytidyla 99.2 5.9E-11 1.3E-15 119.3 10.2 38 85-122 2-39 (712)
113 PRK11545 gntK gluconate kinase 99.2 1.6E-10 3.5E-15 95.3 11.1 156 90-289 1-160 (163)
114 KOG3877 NADH:ubiquinone oxidor 99.2 9.6E-10 2.1E-14 95.2 15.7 128 83-210 70-240 (393)
115 TIGR03263 guanyl_kin guanylate 99.2 1.9E-10 4.2E-15 96.1 11.3 162 85-288 2-179 (180)
116 PRK12338 hypothetical protein; 99.2 1.5E-09 3.1E-14 97.9 17.5 44 82-125 2-45 (319)
117 PRK11860 bifunctional 3-phosph 99.2 5.5E-10 1.2E-14 111.4 15.2 39 84-122 442-480 (661)
118 PRK06696 uridine kinase; Valid 99.1 3E-10 6.4E-15 98.5 10.7 42 80-121 18-64 (223)
119 PTZ00301 uridine kinase; Provi 99.1 2.9E-10 6.2E-15 97.4 10.2 37 84-120 3-46 (210)
120 cd02023 UMPK Uridine monophosp 99.1 9.3E-10 2E-14 93.6 12.3 35 86-120 1-38 (198)
121 PRK07667 uridine kinase; Provi 99.1 2E-09 4.4E-14 91.2 12.8 45 79-123 12-61 (193)
122 PRK04220 2-phosphoglycerate ki 99.1 1E-08 2.3E-13 91.6 17.1 43 82-124 90-132 (301)
123 PRK03846 adenylylsulfate kinas 99.1 1.1E-08 2.3E-13 87.1 16.1 108 82-204 22-138 (198)
124 PLN02348 phosphoribulokinase 99.0 3.1E-09 6.7E-14 98.0 12.7 39 71-109 34-74 (395)
125 PRK05416 glmZ(sRNA)-inactivati 99.0 1.4E-08 3E-13 91.0 16.1 96 83-208 5-106 (288)
126 cd02024 NRK1 Nicotinamide ribo 99.0 1.4E-09 3.1E-14 91.3 8.7 36 86-121 1-37 (187)
127 PRK12269 bifunctional cytidyla 99.0 6.3E-09 1.4E-13 105.3 14.6 40 83-122 33-72 (863)
128 PF13238 AAA_18: AAA domain; P 99.0 1.4E-09 3E-14 85.3 7.9 108 87-209 1-113 (129)
129 PHA03132 thymidine kinase; Pro 99.0 2.3E-08 4.9E-13 96.6 17.4 127 83-209 256-423 (580)
130 PRK00889 adenylylsulfate kinas 99.0 8.3E-09 1.8E-13 85.9 12.3 109 82-205 2-117 (175)
131 TIGR00455 apsK adenylylsulfate 99.0 3.7E-08 8E-13 82.7 16.0 111 82-204 16-132 (184)
132 COG0529 CysC Adenylylsulfate k 99.0 8.2E-09 1.8E-13 84.2 11.1 114 80-205 19-138 (197)
133 PRK05537 bifunctional sulfate 99.0 7.2E-09 1.6E-13 101.2 12.7 111 81-205 389-509 (568)
134 PRK07429 phosphoribulokinase; 98.9 2E-08 4.3E-13 91.6 13.4 40 80-119 4-46 (327)
135 PF07931 CPT: Chloramphenicol 98.9 1.2E-08 2.6E-13 84.6 10.4 122 85-209 2-131 (174)
136 PF08433 KTI12: Chromatin asso 98.9 3.7E-08 8E-13 87.6 14.1 112 84-209 1-120 (270)
137 TIGR03575 selen_PSTK_euk L-ser 98.9 1.2E-08 2.6E-13 93.2 10.6 34 87-120 2-41 (340)
138 PF00625 Guanylate_kin: Guanyl 98.9 1E-08 2.2E-13 86.1 8.9 26 84-109 2-27 (183)
139 PRK12337 2-phosphoglycerate ki 98.9 3.6E-07 7.9E-12 86.0 19.7 42 82-123 253-294 (475)
140 TIGR01663 PNK-3'Pase polynucle 98.9 2.1E-08 4.6E-13 96.5 11.6 102 81-210 366-470 (526)
141 PRK09270 nucleoside triphospha 98.8 2.9E-08 6.3E-13 86.4 11.0 29 81-109 30-58 (229)
142 COG0645 Predicted kinase [Gene 98.8 3.1E-08 6.6E-13 80.5 10.2 120 85-210 2-126 (170)
143 PF00485 PRK: Phosphoribulokin 98.8 2.5E-09 5.5E-14 90.7 3.9 24 86-109 1-24 (194)
144 PF01583 APS_kinase: Adenylyls 98.8 2.7E-08 5.8E-13 80.8 9.2 111 83-205 1-117 (156)
145 cd02027 APSK Adenosine 5'-phos 98.8 7.2E-08 1.6E-12 78.3 11.7 110 86-207 1-116 (149)
146 PF03668 ATP_bind_2: P-loop AT 98.8 5.1E-07 1.1E-11 79.8 16.3 102 84-214 1-109 (284)
147 PLN02772 guanylate kinase 98.8 7.6E-08 1.6E-12 88.8 11.3 67 218-288 249-317 (398)
148 PRK05439 pantothenate kinase; 98.7 2.2E-08 4.8E-13 90.4 7.0 41 80-120 82-129 (311)
149 PRK05506 bifunctional sulfate 98.7 8.6E-08 1.9E-12 95.4 11.8 114 80-205 456-575 (632)
150 cd02026 PRK Phosphoribulokinas 98.7 9.5E-08 2.1E-12 85.2 10.6 34 86-119 1-37 (273)
151 PRK15453 phosphoribulokinase; 98.7 5.2E-08 1.1E-12 86.2 8.5 39 82-120 3-46 (290)
152 COG2074 2-phosphoglycerate kin 98.7 2.1E-06 4.6E-11 73.9 17.8 50 76-125 81-130 (299)
153 COG4639 Predicted kinase [Gene 98.7 1.4E-07 3.1E-12 75.4 9.8 112 85-208 3-117 (168)
154 cd02019 NK Nucleoside/nucleoti 98.7 5E-08 1.1E-12 68.4 6.5 23 86-108 1-23 (69)
155 cd02025 PanK Pantothenate kina 98.7 1.6E-08 3.6E-13 87.4 4.6 34 86-119 1-41 (220)
156 TIGR00554 panK_bact pantothena 98.7 3E-08 6.5E-13 88.8 6.0 40 81-120 59-105 (290)
157 PF06414 Zeta_toxin: Zeta toxi 98.7 2.9E-08 6.4E-13 84.5 5.5 119 81-209 12-142 (199)
158 KOG3308 Uncharacterized protei 98.7 1.7E-07 3.6E-12 78.0 9.5 123 82-210 2-150 (225)
159 COG3709 Uncharacterized compon 98.6 1.6E-06 3.5E-11 69.8 14.4 90 163-290 94-183 (192)
160 cd02028 UMPK_like Uridine mono 98.6 2.1E-07 4.5E-12 77.9 8.6 36 86-121 1-41 (179)
161 PLN02318 phosphoribulokinase/u 98.6 4.5E-07 9.7E-12 87.5 10.9 40 80-119 61-101 (656)
162 PLN02165 adenylate isopentenyl 98.5 6.2E-07 1.3E-11 81.4 9.4 40 79-118 38-77 (334)
163 cd02029 PRK_like Phosphoribulo 98.4 6.5E-07 1.4E-11 78.7 7.6 35 86-120 1-40 (277)
164 PHA00729 NTP-binding motif con 98.4 1.9E-06 4.1E-11 74.2 9.6 114 82-210 15-141 (226)
165 COG1660 Predicted P-loop-conta 98.3 4.2E-05 9E-10 66.4 15.8 148 85-289 2-157 (286)
166 PF01591 6PF2K: 6-phosphofruct 98.3 9.6E-06 2.1E-10 69.9 11.0 151 83-260 11-179 (222)
167 PF13189 Cytidylate_kin2: Cyti 98.2 3.4E-06 7.4E-11 70.6 7.3 115 86-208 1-134 (179)
168 COG1072 CoaA Panthothenate kin 98.2 1.8E-06 3.9E-11 75.5 5.5 29 80-108 78-106 (283)
169 PRK09169 hypothetical protein; 98.2 3.4E-05 7.4E-10 83.2 15.7 112 81-208 2107-2220(2316)
170 PHA03136 thymidine kinase; Pro 98.2 6E-05 1.3E-09 69.3 15.0 24 186-209 190-213 (378)
171 KOG4235 Mitochondrial thymidin 98.2 0.0003 6.5E-09 58.6 17.5 26 185-210 151-176 (244)
172 TIGR03707 PPK2_P_aer polyphosp 98.1 0.00016 3.5E-09 62.6 15.1 155 81-276 28-207 (230)
173 PRK06761 hypothetical protein; 98.1 4.3E-05 9.3E-10 68.2 11.9 32 84-115 3-34 (282)
174 COG4185 Uncharacterized protei 98.1 2.9E-05 6.2E-10 62.6 9.5 141 85-263 3-148 (187)
175 PRK08099 bifunctional DNA-bind 98.1 2.7E-05 5.8E-10 73.2 10.4 44 70-113 202-248 (399)
176 PRK05800 cobU adenosylcobinami 98.1 2.7E-05 5.9E-10 64.5 9.0 26 85-110 2-27 (170)
177 TIGR01223 Pmev_kin_anim phosph 98.0 0.00035 7.5E-09 57.6 14.7 116 86-207 1-134 (182)
178 PF00004 AAA: ATPase family as 98.0 5.4E-06 1.2E-10 65.0 3.7 29 87-115 1-29 (132)
179 PF01745 IPT: Isopentenyl tran 98.0 3.1E-05 6.8E-10 65.5 8.2 121 84-208 1-138 (233)
180 TIGR03709 PPK2_rel_1 polyphosp 98.0 0.00039 8.4E-09 61.4 15.3 153 82-275 54-231 (264)
181 TIGR03708 poly_P_AMP_trns poly 98.0 0.00041 8.9E-09 66.5 16.5 168 81-292 37-235 (493)
182 PF13173 AAA_14: AAA domain 98.0 0.00013 2.7E-09 57.5 10.9 114 85-226 3-123 (128)
183 PRK00091 miaA tRNA delta(2)-is 97.9 1E-05 2.3E-10 73.2 4.5 36 83-118 3-38 (307)
184 KOG3062 RNA polymerase II elon 97.9 5.5E-05 1.2E-09 64.3 7.8 114 84-209 1-123 (281)
185 cd00071 GMPK Guanosine monopho 97.9 4.3E-05 9.2E-10 61.1 6.9 24 86-109 1-24 (137)
186 KOG0733 Nuclear AAA ATPase (VC 97.9 8.3E-05 1.8E-09 71.6 9.7 30 86-115 225-254 (802)
187 PTZ00322 6-phosphofructo-2-kin 97.9 0.00025 5.5E-09 71.1 13.7 39 83-121 214-257 (664)
188 PF13521 AAA_28: AAA domain; P 97.8 1.4E-05 3E-10 65.6 3.1 37 86-125 1-37 (163)
189 PLN02840 tRNA dimethylallyltra 97.8 1.9E-05 4E-10 74.0 4.3 36 82-117 19-54 (421)
190 PHA02575 1 deoxynucleoside mon 97.8 3.7E-05 8.1E-10 65.8 5.1 40 85-125 1-41 (227)
191 COG1618 Predicted nucleotide k 97.8 2.8E-05 6E-10 62.9 3.9 27 83-109 4-30 (179)
192 CHL00195 ycf46 Ycf46; Provisio 97.7 0.00022 4.7E-09 68.7 10.6 33 83-115 258-290 (489)
193 KOG0635 Adenosine 5'-phosphosu 97.7 9.4E-05 2E-09 59.0 6.6 29 80-108 27-55 (207)
194 PF03976 PPK2: Polyphosphate k 97.7 0.00014 3.1E-09 63.0 8.3 148 82-275 29-206 (228)
195 KOG0730 AAA+-type ATPase [Post 97.6 0.00058 1.3E-08 66.4 11.4 34 82-115 466-499 (693)
196 TIGR00174 miaA tRNA isopenteny 97.6 4.7E-05 1E-09 68.2 3.7 32 86-117 1-32 (287)
197 PLN02748 tRNA dimethylallyltra 97.6 5.5E-05 1.2E-09 72.1 4.2 36 82-117 20-55 (468)
198 COG3896 Chloramphenicol 3-O-ph 97.6 0.00069 1.5E-08 54.6 9.5 134 75-208 14-160 (205)
199 PRK12724 flagellar biosynthesi 97.6 0.00076 1.7E-08 63.3 11.2 107 83-198 222-344 (432)
200 KOG0744 AAA+-type ATPase [Post 97.6 5.4E-05 1.2E-09 67.7 3.3 26 85-110 178-203 (423)
201 COG3172 NadR Predicted ATPase/ 97.6 0.0041 8.8E-08 50.4 13.5 29 83-111 7-35 (187)
202 smart00382 AAA ATPases associa 97.5 7E-05 1.5E-09 58.4 3.4 27 85-111 3-29 (148)
203 PF07728 AAA_5: AAA domain (dy 97.5 8.9E-05 1.9E-09 59.0 3.9 27 87-113 2-28 (139)
204 KOG0707 Guanylate kinase [Nucl 97.5 0.00059 1.3E-08 58.4 8.9 70 223-293 156-225 (231)
205 PF05496 RuvB_N: Holliday junc 97.5 0.0001 2.2E-09 63.2 3.9 30 84-113 50-79 (233)
206 cd00544 CobU Adenosylcobinamid 97.5 0.00045 9.6E-09 57.2 7.6 25 86-110 1-25 (169)
207 PRK12323 DNA polymerase III su 97.5 0.0047 1E-07 61.0 15.5 28 83-110 37-64 (700)
208 TIGR00390 hslU ATP-dependent p 97.5 0.00011 2.5E-09 68.6 4.1 33 84-116 47-79 (441)
209 TIGR00150 HI0065_YjeE ATPase, 97.5 0.00015 3.2E-09 57.5 4.2 30 82-111 20-49 (133)
210 KOG1384 tRNA delta(2)-isopente 97.4 0.00033 7.1E-09 62.9 6.5 36 83-118 6-41 (348)
211 PF13401 AAA_22: AAA domain; P 97.4 0.00021 4.6E-09 55.9 4.8 25 84-108 4-28 (131)
212 COG0324 MiaA tRNA delta(2)-iso 97.4 0.00017 3.6E-09 64.9 4.6 36 83-118 2-37 (308)
213 TIGR03708 poly_P_AMP_trns poly 97.4 0.012 2.5E-07 56.7 17.3 152 81-275 296-474 (493)
214 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00013 2.9E-09 67.0 4.0 27 84-110 78-104 (361)
215 PLN02796 D-glycerate 3-kinase 97.4 0.00012 2.7E-09 66.8 3.7 38 82-119 98-140 (347)
216 PRK07003 DNA polymerase III su 97.4 0.0041 9E-08 62.3 14.5 28 84-111 38-65 (830)
217 PF08303 tRNA_lig_kinase: tRNA 97.4 0.0018 3.8E-08 52.8 9.9 32 87-118 2-34 (168)
218 PRK05201 hslU ATP-dependent pr 97.4 0.00016 3.4E-09 67.8 4.0 34 84-117 50-83 (443)
219 PLN00020 ribulose bisphosphate 97.3 0.00021 4.6E-09 65.7 4.2 38 82-119 146-185 (413)
220 KOG2702 Predicted panthothenat 97.3 0.00068 1.5E-08 58.0 6.9 25 85-109 120-144 (323)
221 PLN03046 D-glycerate 3-kinase; 97.3 0.00019 4.1E-09 67.1 3.7 37 83-119 211-252 (460)
222 PF03266 NTPase_1: NTPase; In 97.3 0.00027 5.8E-09 58.5 3.9 23 86-108 1-23 (168)
223 PF03308 ArgK: ArgK protein; 97.3 0.00031 6.8E-09 61.4 4.3 28 81-108 26-53 (266)
224 KOG0734 AAA+-type ATPase conta 97.3 0.00087 1.9E-08 63.8 7.3 34 82-115 335-368 (752)
225 PRK14729 miaA tRNA delta(2)-is 97.2 0.00036 7.9E-09 62.9 4.7 35 83-118 3-37 (300)
226 PRK14957 DNA polymerase III su 97.2 0.015 3.2E-07 56.9 16.0 27 84-110 38-64 (546)
227 PF02367 UPF0079: Uncharacteri 97.2 0.00036 7.8E-09 54.5 3.9 31 81-111 12-42 (123)
228 TIGR01650 PD_CobS cobaltochela 97.2 0.00028 6.1E-09 64.1 3.8 30 85-114 65-94 (327)
229 cd00009 AAA The AAA+ (ATPases 97.2 0.00039 8.4E-09 54.6 4.2 25 84-108 19-43 (151)
230 PRK10751 molybdopterin-guanine 97.2 0.00036 7.9E-09 57.8 4.1 28 82-109 4-31 (173)
231 PRK12402 replication factor C 97.2 0.011 2.3E-07 54.1 14.3 25 85-109 37-61 (337)
232 PF10662 PduV-EutP: Ethanolami 97.2 0.00028 6.1E-09 56.4 3.1 24 84-107 1-24 (143)
233 PHA02244 ATPase-like protein 97.2 0.00069 1.5E-08 62.5 5.9 35 85-119 120-154 (383)
234 TIGR01526 nadR_NMN_Atrans nico 97.2 0.00039 8.4E-09 63.7 4.4 30 84-113 162-191 (325)
235 KOG0737 AAA+-type ATPase [Post 97.2 0.0012 2.6E-08 60.2 7.3 33 83-115 126-158 (386)
236 PRK09087 hypothetical protein; 97.2 0.00084 1.8E-08 58.3 6.1 37 85-121 45-81 (226)
237 TIGR02881 spore_V_K stage V sp 97.2 0.00038 8.2E-09 61.8 4.0 25 84-108 42-66 (261)
238 PRK14964 DNA polymerase III su 97.2 0.019 4.2E-07 55.3 15.7 29 83-111 34-62 (491)
239 PRK14960 DNA polymerase III su 97.2 0.017 3.8E-07 57.2 15.6 28 84-111 37-64 (702)
240 TIGR02640 gas_vesic_GvpN gas v 97.1 0.00046 9.9E-09 61.3 4.1 29 85-113 22-50 (262)
241 PF03215 Rad17: Rad17 cell cyc 97.1 0.00053 1.1E-08 66.5 4.7 31 84-114 45-75 (519)
242 PRK11784 tRNA 2-selenouridine 97.1 0.0026 5.6E-08 58.7 9.0 108 84-209 141-257 (345)
243 PF00910 RNA_helicase: RNA hel 97.1 0.00039 8.4E-09 53.0 2.9 23 87-109 1-23 (107)
244 COG3911 Predicted ATPase [Gene 97.1 0.00051 1.1E-08 54.8 3.5 30 83-113 8-37 (183)
245 PF13245 AAA_19: Part of AAA d 97.1 0.00062 1.3E-08 48.5 3.7 25 84-108 10-35 (76)
246 PRK14963 DNA polymerase III su 97.1 0.023 5.1E-07 55.1 15.6 28 83-110 35-62 (504)
247 PF05729 NACHT: NACHT domain 97.1 0.00049 1.1E-08 55.8 3.6 23 86-108 2-24 (166)
248 COG2256 MGS1 ATPase related to 97.1 0.00055 1.2E-08 63.1 4.2 39 77-115 41-79 (436)
249 PRK03992 proteasome-activating 97.1 0.00058 1.2E-08 64.2 4.2 32 83-114 164-195 (389)
250 COG0464 SpoVK ATPases of the A 97.1 0.0025 5.4E-08 61.8 8.8 33 83-115 275-307 (494)
251 KOG1533 Predicted GTPase [Gene 97.1 0.0036 7.9E-08 53.8 8.5 22 87-108 5-26 (290)
252 PRK14965 DNA polymerase III su 97.1 0.021 4.6E-07 56.4 15.3 29 83-111 37-65 (576)
253 KOG0738 AAA+-type ATPase [Post 97.0 0.007 1.5E-07 55.8 10.7 31 85-115 246-276 (491)
254 COG1703 ArgK Putative periplas 97.0 0.00059 1.3E-08 60.6 3.8 31 78-108 45-75 (323)
255 PRK14951 DNA polymerase III su 97.0 0.033 7.1E-07 55.3 16.3 29 83-111 37-65 (618)
256 KOG1969 DNA replication checkp 97.0 0.0013 2.8E-08 64.8 6.3 31 85-115 327-357 (877)
257 PF03029 ATP_bind_1: Conserved 97.0 0.00042 9E-09 60.7 2.8 21 89-109 1-21 (238)
258 PRK09435 membrane ATPase/prote 97.0 0.00069 1.5E-08 62.0 4.3 28 81-108 53-80 (332)
259 PRK05342 clpX ATP-dependent pr 97.0 0.0006 1.3E-08 64.4 3.8 32 85-116 109-140 (412)
260 PRK14949 DNA polymerase III su 97.0 0.02 4.3E-07 58.6 14.7 29 83-111 37-65 (944)
261 CHL00181 cbbX CbbX; Provisiona 97.0 0.0012 2.5E-08 59.5 5.4 25 84-108 59-83 (287)
262 PHA03134 thymidine kinase; Pro 97.0 0.076 1.7E-06 48.4 16.9 25 83-107 12-36 (340)
263 PF01712 dNK: Deoxynucleoside 97.0 0.0002 4.3E-09 57.8 0.3 24 186-209 65-89 (146)
264 PF07726 AAA_3: ATPase family 97.0 0.00044 9.6E-09 54.1 2.1 27 87-113 2-28 (131)
265 PRK07764 DNA polymerase III su 97.0 0.017 3.7E-07 59.2 13.9 30 82-111 35-64 (824)
266 TIGR01242 26Sp45 26S proteasom 97.0 0.00093 2E-08 62.2 4.5 32 84-115 156-187 (364)
267 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0022 4.7E-08 56.1 6.6 33 84-116 21-58 (237)
268 TIGR00101 ureG urease accessor 97.0 0.00087 1.9E-08 57.0 4.0 25 84-108 1-25 (199)
269 TIGR01243 CDC48 AAA family ATP 96.9 0.0053 1.2E-07 62.5 10.3 33 83-115 486-518 (733)
270 PTZ00454 26S protease regulato 96.9 0.00095 2.1E-08 62.8 4.4 33 83-115 178-210 (398)
271 PF00448 SRP54: SRP54-type pro 96.9 0.0009 1.9E-08 56.8 3.9 25 84-108 1-25 (196)
272 PRK04195 replication factor C 96.9 0.00085 1.8E-08 64.9 4.2 32 84-115 39-70 (482)
273 KOG0739 AAA+-type ATPase [Post 96.9 0.0096 2.1E-07 53.1 10.2 38 85-122 167-206 (439)
274 cd03116 MobB Molybdenum is an 96.9 0.001 2.2E-08 54.5 3.9 25 84-108 1-25 (159)
275 PF03205 MobB: Molybdopterin g 96.9 0.00093 2E-08 53.5 3.6 24 85-108 1-24 (140)
276 PRK13695 putative NTPase; Prov 96.9 0.00093 2E-08 55.4 3.6 24 85-108 1-24 (174)
277 TIGR00635 ruvB Holliday juncti 96.9 0.0012 2.5E-08 59.8 4.6 29 84-112 30-58 (305)
278 TIGR00382 clpX endopeptidase C 96.9 0.00091 2E-08 63.0 3.9 31 85-115 117-147 (413)
279 PRK00771 signal recognition pa 96.9 0.0015 3.3E-08 62.0 5.4 26 83-108 94-119 (437)
280 PRK14086 dnaA chromosomal repl 96.9 0.0074 1.6E-07 59.4 10.2 38 86-123 316-360 (617)
281 COG0466 Lon ATP-dependent Lon 96.9 0.001 2.2E-08 65.4 4.2 38 81-118 347-386 (782)
282 COG1126 GlnQ ABC-type polar am 96.9 0.00091 2E-08 56.9 3.4 24 82-105 26-49 (240)
283 KOG0731 AAA+-type ATPase conta 96.9 0.0028 6E-08 63.3 7.1 35 82-116 342-376 (774)
284 COG4619 ABC-type uncharacteriz 96.8 0.00092 2E-08 54.7 3.1 24 84-107 29-52 (223)
285 cd01131 PilT Pilus retraction 96.8 0.0011 2.3E-08 56.4 3.6 24 86-109 3-26 (198)
286 PHA03135 thymidine kinase; Pro 96.8 0.031 6.8E-07 50.9 13.2 24 84-107 10-33 (343)
287 COG1855 ATPase (PilT family) [ 96.8 0.00089 1.9E-08 62.6 3.3 23 86-108 265-287 (604)
288 KOG0780 Signal recognition par 96.8 0.011 2.5E-07 54.3 10.2 113 77-198 94-225 (483)
289 cd00820 PEPCK_HprK Phosphoenol 96.8 0.0014 2.9E-08 49.9 3.7 22 84-105 15-36 (107)
290 PRK04328 hypothetical protein; 96.8 0.003 6.4E-08 55.7 6.5 33 84-116 23-60 (249)
291 TIGR03420 DnaA_homol_Hda DnaA 96.8 0.0015 3.2E-08 56.3 4.5 38 82-119 36-78 (226)
292 PF13191 AAA_16: AAA ATPase do 96.8 0.0011 2.4E-08 55.0 3.5 28 81-108 21-48 (185)
293 PRK00080 ruvB Holliday junctio 96.8 0.0013 2.9E-08 60.3 4.3 29 84-112 51-79 (328)
294 COG0378 HypB Ni2+-binding GTPa 96.8 0.0013 2.9E-08 55.0 3.8 33 84-116 13-49 (202)
295 TIGR02880 cbbX_cfxQ probable R 96.8 0.0013 2.9E-08 59.1 4.1 24 85-108 59-82 (284)
296 PRK06647 DNA polymerase III su 96.8 0.056 1.2E-06 53.3 15.7 30 82-111 36-65 (563)
297 KOG1532 GTPase XAB1, interacts 96.8 0.0018 3.9E-08 56.9 4.6 41 82-122 17-62 (366)
298 KOG1970 Checkpoint RAD17-RFC c 96.8 0.0013 2.7E-08 62.9 4.0 30 84-113 110-139 (634)
299 PRK10646 ADP-binding protein; 96.8 0.0018 3.9E-08 52.5 4.4 29 82-110 26-54 (153)
300 PRK07994 DNA polymerase III su 96.8 0.03 6.5E-07 55.8 13.7 28 84-111 38-65 (647)
301 PTZ00202 tuzin; Provisional 96.8 0.0054 1.2E-07 57.9 7.9 28 84-111 286-313 (550)
302 TIGR01241 FtsH_fam ATP-depende 96.8 0.0013 2.8E-08 63.8 4.2 32 84-115 88-119 (495)
303 PF07724 AAA_2: AAA domain (Cd 96.8 0.0017 3.7E-08 53.8 4.3 26 85-110 4-29 (171)
304 PRK06620 hypothetical protein; 96.8 0.0012 2.5E-08 56.9 3.4 30 85-114 45-74 (214)
305 PRK13342 recombination factor 96.7 0.0016 3.4E-08 61.8 4.4 34 82-115 34-67 (413)
306 TIGR03881 KaiC_arch_4 KaiC dom 96.7 0.0039 8.5E-08 53.9 6.6 23 84-106 20-42 (229)
307 PTZ00361 26 proteosome regulat 96.7 0.0017 3.6E-08 61.8 4.5 32 83-114 216-247 (438)
308 TIGR03015 pepcterm_ATPase puta 96.7 0.0014 3.1E-08 58.0 3.8 26 84-109 43-68 (269)
309 COG4240 Predicted kinase [Gene 96.7 0.0022 4.8E-08 54.9 4.7 41 82-122 48-94 (300)
310 PF08477 Miro: Miro-like prote 96.7 0.0016 3.4E-08 50.0 3.5 23 86-108 1-23 (119)
311 COG1116 TauB ABC-type nitrate/ 96.7 0.0012 2.7E-08 57.2 3.2 26 82-107 27-52 (248)
312 KOG2004 Mitochondrial ATP-depe 96.7 0.0014 3E-08 64.5 3.8 38 81-118 435-474 (906)
313 cd03115 SRP The signal recogni 96.7 0.0015 3.3E-08 54.0 3.7 31 86-116 2-37 (173)
314 PF06745 KaiC: KaiC; InterPro 96.7 0.0034 7.4E-08 54.3 5.9 36 84-119 19-60 (226)
315 KOG4238 Bifunctional ATP sulfu 96.7 0.0051 1.1E-07 55.9 7.0 132 84-230 50-198 (627)
316 PRK08903 DnaA regulatory inact 96.7 0.002 4.3E-08 55.8 4.4 34 85-118 43-81 (227)
317 KOG0991 Replication factor C, 96.7 0.0019 4E-08 55.6 4.0 31 78-108 42-72 (333)
318 PRK14952 DNA polymerase III su 96.7 0.11 2.4E-06 51.4 16.9 29 83-111 34-62 (584)
319 TIGR00362 DnaA chromosomal rep 96.7 0.08 1.7E-06 50.0 15.6 37 85-121 137-180 (405)
320 cd01124 KaiC KaiC is a circadi 96.7 0.0013 2.8E-08 54.8 3.1 30 87-116 2-36 (187)
321 COG0802 Predicted ATPase or ki 96.7 0.0024 5.2E-08 51.2 4.3 30 81-110 22-51 (149)
322 TIGR02655 circ_KaiC circadian 96.7 0.0027 5.9E-08 61.4 5.5 88 82-171 261-362 (484)
323 PF06309 Torsin: Torsin; Inte 96.7 0.0023 5.1E-08 49.9 4.1 29 80-108 49-77 (127)
324 PRK06067 flagellar accessory p 96.7 0.0047 1E-07 53.8 6.5 33 84-116 25-62 (234)
325 cd04163 Era Era subfamily. Er 96.7 0.0017 3.7E-08 52.1 3.5 23 84-106 3-25 (168)
326 PHA03138 thymidine kinase; Pro 96.7 0.021 4.5E-07 52.1 10.6 25 84-108 12-36 (340)
327 PRK08084 DNA replication initi 96.6 0.0022 4.8E-08 56.0 4.3 33 85-117 46-83 (235)
328 cd01918 HprK_C HprK/P, the bif 96.6 0.002 4.3E-08 52.0 3.6 32 84-116 14-45 (149)
329 COG1136 SalX ABC-type antimicr 96.6 0.0018 3.9E-08 55.8 3.5 25 82-106 29-53 (226)
330 PRK06893 DNA replication initi 96.6 0.0026 5.7E-08 55.3 4.6 32 85-116 40-76 (229)
331 PF13555 AAA_29: P-loop contai 96.6 0.0023 4.9E-08 43.5 3.3 22 86-107 25-46 (62)
332 cd01120 RecA-like_NTPases RecA 96.6 0.0016 3.5E-08 52.4 3.1 23 86-108 1-23 (165)
333 COG1223 Predicted ATPase (AAA+ 96.6 0.0057 1.2E-07 53.6 6.5 38 84-121 151-190 (368)
334 TIGR00073 hypB hydrogenase acc 96.6 0.0022 4.7E-08 54.8 4.0 27 83-109 21-47 (207)
335 TIGR00678 holB DNA polymerase 96.6 0.085 1.8E-06 44.1 13.7 29 82-110 12-40 (188)
336 PRK07940 DNA polymerase III su 96.6 0.058 1.2E-06 50.8 13.7 28 84-111 36-63 (394)
337 PRK14959 DNA polymerase III su 96.6 0.048 1E-06 54.0 13.6 28 84-111 38-65 (624)
338 PRK14974 cell division protein 96.6 0.0022 4.8E-08 58.9 4.2 27 82-108 138-164 (336)
339 PRK13768 GTPase; Provisional 96.6 0.0021 4.4E-08 56.9 3.8 25 84-108 2-26 (253)
340 TIGR02397 dnaX_nterm DNA polym 96.6 0.15 3.2E-06 47.0 16.4 29 83-111 35-63 (355)
341 PRK14493 putative bifunctional 96.6 0.0021 4.6E-08 57.4 3.8 25 84-108 1-25 (274)
342 KOG0735 AAA+-type ATPase [Post 96.6 0.011 2.5E-07 58.3 8.9 37 86-122 703-741 (952)
343 TIGR00064 ftsY signal recognit 96.6 0.0025 5.3E-08 57.0 4.2 27 82-108 70-96 (272)
344 TIGR00176 mobB molybdopterin-g 96.6 0.002 4.3E-08 52.5 3.3 23 86-108 1-23 (155)
345 PRK10416 signal recognition pa 96.6 0.0025 5.4E-08 58.2 4.2 27 82-108 112-138 (318)
346 TIGR00750 lao LAO/AO transport 96.6 0.0026 5.5E-08 57.7 4.2 28 81-108 31-58 (300)
347 COG3839 MalK ABC-type sugar tr 96.5 0.0019 4.1E-08 59.1 3.2 24 83-106 28-51 (338)
348 PRK08116 hypothetical protein; 96.5 0.022 4.8E-07 50.8 10.0 37 85-121 115-156 (268)
349 CHL00176 ftsH cell division pr 96.5 0.0026 5.7E-08 63.3 4.5 32 84-115 216-247 (638)
350 KOG1534 Putative transcription 96.5 0.0091 2E-07 50.6 6.9 31 86-116 5-40 (273)
351 COG2326 Uncharacterized conser 96.5 0.17 3.7E-06 44.1 14.8 110 81-212 71-203 (270)
352 PRK15455 PrkA family serine pr 96.5 0.0022 4.8E-08 62.3 3.8 27 82-108 101-127 (644)
353 PRK12377 putative replication 96.5 0.0041 8.9E-08 54.7 5.2 38 85-122 102-144 (248)
354 COG2255 RuvB Holliday junction 96.5 0.0024 5.3E-08 56.4 3.6 26 86-111 54-79 (332)
355 PF01695 IstB_IS21: IstB-like 96.5 0.0047 1E-07 51.6 5.3 40 83-122 46-90 (178)
356 PRK14490 putative bifunctional 96.5 0.0026 5.6E-08 59.4 4.0 28 82-109 3-30 (369)
357 cd01130 VirB11-like_ATPase Typ 96.5 0.0026 5.5E-08 53.4 3.6 27 82-108 23-49 (186)
358 TIGR03689 pup_AAA proteasome A 96.5 0.0022 4.8E-08 62.0 3.6 29 83-111 215-243 (512)
359 PRK14962 DNA polymerase III su 96.5 0.003 6.4E-08 60.8 4.4 27 84-110 36-62 (472)
360 COG1124 DppF ABC-type dipeptid 96.5 0.0024 5.3E-08 55.2 3.4 24 83-106 32-55 (252)
361 PRK14961 DNA polymerase III su 96.5 0.0033 7.1E-08 58.6 4.4 28 83-110 37-64 (363)
362 PRK06526 transposase; Provisio 96.5 0.0037 8.1E-08 55.2 4.6 39 83-121 97-140 (254)
363 PRK14953 DNA polymerase III su 96.4 0.22 4.8E-06 48.2 16.9 27 84-110 38-64 (486)
364 PF00005 ABC_tran: ABC transpo 96.4 0.0021 4.6E-08 50.7 2.6 26 83-108 10-35 (137)
365 PF01926 MMR_HSR1: 50S ribosom 96.4 0.0028 6.1E-08 48.6 3.2 21 86-106 1-21 (116)
366 PRK14956 DNA polymerase III su 96.4 0.0033 7.2E-08 60.1 4.3 28 84-111 40-67 (484)
367 TIGR03499 FlhF flagellar biosy 96.4 0.0033 7.2E-08 56.5 4.0 26 83-108 193-218 (282)
368 COG1222 RPT1 ATP-dependent 26S 96.4 0.0052 1.1E-07 56.0 5.1 43 84-126 185-229 (406)
369 COG1219 ClpX ATP-dependent pro 96.4 0.0033 7.1E-08 56.5 3.8 31 86-116 99-129 (408)
370 PRK09183 transposase/IS protei 96.4 0.0052 1.1E-07 54.5 5.1 37 84-120 102-143 (259)
371 TIGR01166 cbiO cobalt transpor 96.4 0.003 6.6E-08 53.0 3.5 26 83-108 17-42 (190)
372 COG1763 MobB Molybdopterin-gua 96.4 0.003 6.5E-08 51.7 3.3 25 84-108 2-26 (161)
373 cd01983 Fer4_NifH The Fer4_Nif 96.4 0.0039 8.4E-08 45.5 3.7 31 86-116 1-34 (99)
374 TIGR01618 phage_P_loop phage n 96.4 0.0027 5.8E-08 54.8 3.1 33 83-117 11-43 (220)
375 PRK04296 thymidine kinase; Pro 96.4 0.0034 7.4E-08 53.0 3.6 24 85-108 3-26 (190)
376 KOG0743 AAA+-type ATPase [Post 96.4 0.0025 5.5E-08 59.6 3.0 29 87-115 238-266 (457)
377 PHA02544 44 clamp loader, smal 96.4 0.004 8.7E-08 56.6 4.3 30 83-112 42-71 (316)
378 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.4 0.0033 7.1E-08 54.0 3.5 26 83-108 29-54 (218)
379 TIGR00960 3a0501s02 Type II (G 96.4 0.0032 7E-08 54.0 3.5 26 83-108 28-53 (216)
380 TIGR00763 lon ATP-dependent pr 96.4 0.0038 8.2E-08 63.9 4.5 31 83-113 346-376 (775)
381 PLN03025 replication factor C 96.4 0.0037 8E-08 57.1 4.0 25 84-108 34-58 (319)
382 COG1120 FepC ABC-type cobalami 96.3 0.0035 7.6E-08 55.2 3.5 27 82-108 26-52 (258)
383 cd03292 ABC_FtsE_transporter F 96.3 0.0035 7.6E-08 53.6 3.5 26 83-108 26-51 (214)
384 PRK10463 hydrogenase nickel in 96.3 0.0042 9.1E-08 55.7 4.1 27 82-108 102-128 (290)
385 TIGR01243 CDC48 AAA family ATP 96.3 0.0036 7.8E-08 63.7 4.1 32 83-114 211-242 (733)
386 cd03225 ABC_cobalt_CbiO_domain 96.3 0.0037 7.9E-08 53.4 3.6 26 83-108 26-51 (211)
387 COG3842 PotA ABC-type spermidi 96.3 0.0031 6.7E-08 58.0 3.2 24 83-106 30-53 (352)
388 PRK00149 dnaA chromosomal repl 96.3 0.018 4E-07 55.2 8.7 37 86-122 150-193 (450)
389 KOG0733 Nuclear AAA ATPase (VC 96.3 0.0032 7E-08 61.0 3.4 31 85-115 546-576 (802)
390 TIGR02673 FtsE cell division A 96.3 0.0037 8E-08 53.5 3.5 26 83-108 27-52 (214)
391 PRK06645 DNA polymerase III su 96.3 0.0043 9.4E-08 60.1 4.3 29 83-111 42-70 (507)
392 cd03229 ABC_Class3 This class 96.3 0.004 8.8E-08 51.8 3.6 27 82-108 24-50 (178)
393 PF13086 AAA_11: AAA domain; P 96.3 0.0042 9.2E-08 53.2 3.8 26 83-108 16-41 (236)
394 PRK14494 putative molybdopteri 96.3 0.0043 9.3E-08 53.8 3.7 25 84-108 1-25 (229)
395 cd03269 ABC_putative_ATPase Th 96.3 0.004 8.7E-08 53.1 3.6 26 83-108 25-50 (210)
396 PRK06305 DNA polymerase III su 96.3 0.11 2.5E-06 49.7 13.8 28 84-111 39-66 (451)
397 cd03224 ABC_TM1139_LivF_branch 96.3 0.0041 8.8E-08 53.5 3.6 26 83-108 25-50 (222)
398 PRK07133 DNA polymerase III su 96.3 0.055 1.2E-06 54.4 11.8 28 84-111 40-67 (725)
399 COG2087 CobU Adenosyl cobinami 96.3 0.027 5.8E-07 46.0 7.9 29 85-113 1-29 (175)
400 TIGR02211 LolD_lipo_ex lipopro 96.2 0.0042 9E-08 53.5 3.5 26 83-108 30-55 (221)
401 cd03261 ABC_Org_Solvent_Resist 96.2 0.0041 8.8E-08 54.1 3.5 26 83-108 25-50 (235)
402 cd03260 ABC_PstB_phosphate_tra 96.2 0.0042 9.1E-08 53.7 3.6 26 83-108 25-50 (227)
403 PRK08181 transposase; Validate 96.2 0.0078 1.7E-07 53.6 5.3 40 83-122 105-149 (269)
404 cd03259 ABC_Carb_Solutes_like 96.2 0.0042 9.2E-08 53.1 3.6 26 83-108 25-50 (213)
405 PHA03133 thymidine kinase; Pro 96.2 0.082 1.8E-06 48.5 11.8 27 83-109 39-65 (368)
406 cd03226 ABC_cobalt_CbiO_domain 96.2 0.0042 9E-08 52.9 3.4 26 83-108 25-50 (205)
407 cd03264 ABC_drug_resistance_li 96.2 0.0039 8.5E-08 53.2 3.3 23 86-108 27-49 (211)
408 PF04665 Pox_A32: Poxvirus A32 96.2 0.0048 1E-07 53.8 3.8 27 82-108 11-37 (241)
409 cd03219 ABC_Mj1267_LivG_branch 96.2 0.0039 8.5E-08 54.2 3.3 26 83-108 25-50 (236)
410 cd03301 ABC_MalK_N The N-termi 96.2 0.0044 9.6E-08 53.0 3.6 26 83-108 25-50 (213)
411 TIGR02655 circ_KaiC circadian 96.2 0.011 2.3E-07 57.3 6.6 33 84-116 21-59 (484)
412 TIGR03608 L_ocin_972_ABC putat 96.2 0.0043 9.3E-08 52.7 3.5 26 83-108 23-48 (206)
413 PRK06921 hypothetical protein; 96.2 0.011 2.3E-07 52.7 6.1 38 84-121 117-160 (266)
414 cd03235 ABC_Metallic_Cations A 96.2 0.0039 8.5E-08 53.3 3.2 26 83-108 24-49 (213)
415 cd03222 ABC_RNaseL_inhibitor T 96.2 0.0043 9.2E-08 51.8 3.3 26 83-108 24-49 (177)
416 cd03256 ABC_PhnC_transporter A 96.2 0.0044 9.6E-08 54.0 3.5 26 83-108 26-51 (241)
417 COG0714 MoxR-like ATPases [Gen 96.2 0.0048 1E-07 56.6 3.9 30 84-113 43-72 (329)
418 PRK11629 lolD lipoprotein tran 96.2 0.0045 9.7E-08 53.8 3.5 26 83-108 34-59 (233)
419 PHA02624 large T antigen; Prov 96.2 0.0059 1.3E-07 59.6 4.6 33 83-115 430-462 (647)
420 cd03293 ABC_NrtD_SsuB_transpor 96.2 0.0044 9.4E-08 53.4 3.4 26 83-108 29-54 (220)
421 cd03223 ABCD_peroxisomal_ALDP 96.2 0.0048 1E-07 50.8 3.5 26 83-108 26-51 (166)
422 cd03263 ABC_subfamily_A The AB 96.2 0.0046 9.9E-08 53.2 3.5 26 83-108 27-52 (220)
423 cd03262 ABC_HisP_GlnQ_permease 96.2 0.0046 1E-07 52.8 3.5 26 83-108 25-50 (213)
424 PRK13541 cytochrome c biogenes 96.2 0.0048 1E-07 52.1 3.5 26 83-108 25-50 (195)
425 cd03247 ABCC_cytochrome_bd The 96.2 0.0049 1.1E-07 51.3 3.5 27 82-108 26-52 (178)
426 cd03283 ABC_MutS-like MutS-lik 96.2 0.0044 9.4E-08 52.7 3.3 22 85-106 26-47 (199)
427 TIGR02315 ABC_phnC phosphonate 96.2 0.0046 1E-07 54.0 3.5 26 83-108 27-52 (243)
428 PRK08533 flagellar accessory p 96.2 0.005 1.1E-07 53.6 3.7 23 84-106 24-46 (230)
429 cd03257 ABC_NikE_OppD_transpor 96.2 0.0045 9.8E-08 53.4 3.4 26 83-108 30-55 (228)
430 cd03238 ABC_UvrA The excision 96.2 0.0048 1E-07 51.4 3.4 24 83-106 20-43 (176)
431 cd04155 Arl3 Arl3 subfamily. 96.2 0.0046 9.9E-08 50.6 3.3 24 84-107 14-37 (173)
432 cd03230 ABC_DR_subfamily_A Thi 96.2 0.005 1.1E-07 50.9 3.5 26 83-108 25-50 (173)
433 PRK10867 signal recognition pa 96.2 0.0057 1.2E-07 58.1 4.2 35 82-116 98-138 (433)
434 cd01394 radB RadB. The archaea 96.2 0.0061 1.3E-07 52.3 4.1 26 83-108 18-43 (218)
435 PF00308 Bac_DnaA: Bacterial d 96.2 0.082 1.8E-06 45.6 11.2 38 86-123 36-80 (219)
436 PRK15177 Vi polysaccharide exp 96.2 0.0048 1E-07 53.0 3.5 26 83-108 12-37 (213)
437 TIGR02012 tigrfam_recA protein 96.2 0.023 5E-07 51.8 8.0 38 83-120 54-96 (321)
438 TIGR01425 SRP54_euk signal rec 96.2 0.0059 1.3E-07 57.8 4.3 27 82-108 98-124 (429)
439 PF06068 TIP49: TIP49 C-termin 96.2 0.0057 1.2E-07 56.3 4.0 26 84-109 50-75 (398)
440 cd03296 ABC_CysA_sulfate_impor 96.2 0.0048 1E-07 53.8 3.5 26 83-108 27-52 (239)
441 COG2884 FtsE Predicted ATPase 96.2 0.0058 1.3E-07 51.1 3.7 27 82-108 26-52 (223)
442 cd03265 ABC_DrrA DrrA is the A 96.1 0.005 1.1E-07 53.0 3.6 26 83-108 25-50 (220)
443 cd03258 ABC_MetN_methionine_tr 96.1 0.0049 1.1E-07 53.5 3.5 26 83-108 30-55 (233)
444 TIGR03864 PQQ_ABC_ATP ABC tran 96.1 0.005 1.1E-07 53.6 3.5 26 83-108 26-51 (236)
445 PF01443 Viral_helicase1: Vira 96.1 0.0037 8E-08 54.0 2.7 22 87-108 1-22 (234)
446 COG2909 MalT ATP-dependent tra 96.1 0.11 2.4E-06 52.6 13.1 88 85-173 38-140 (894)
447 PRK14722 flhF flagellar biosyn 96.1 0.0055 1.2E-07 57.0 3.9 26 83-108 136-161 (374)
448 PRK10247 putative ABC transpor 96.1 0.0052 1.1E-07 53.2 3.6 25 83-107 32-56 (225)
449 PRK13540 cytochrome c biogenes 96.1 0.0053 1.1E-07 52.1 3.6 27 82-108 25-51 (200)
450 PF02492 cobW: CobW/HypB/UreG, 96.1 0.005 1.1E-07 51.3 3.4 22 85-106 1-22 (178)
451 cd03232 ABC_PDR_domain2 The pl 96.1 0.0051 1.1E-07 51.9 3.4 24 83-106 32-55 (192)
452 PRK13341 recombination factor 96.1 0.0063 1.4E-07 61.5 4.6 36 82-117 50-85 (725)
453 PRK10787 DNA-binding ATP-depen 96.1 0.0058 1.2E-07 62.4 4.3 32 83-114 348-379 (784)
454 PRK13851 type IV secretion sys 96.1 0.004 8.8E-08 57.4 3.0 28 82-109 160-187 (344)
455 cd03246 ABCC_Protease_Secretio 96.1 0.0056 1.2E-07 50.7 3.6 26 83-108 27-52 (173)
456 PRK07952 DNA replication prote 96.1 0.0086 1.9E-07 52.6 4.9 37 85-121 100-141 (244)
457 TIGR02237 recomb_radB DNA repa 96.1 0.0068 1.5E-07 51.6 4.2 33 84-116 12-49 (209)
458 COG1117 PstB ABC-type phosphat 96.1 0.0052 1.1E-07 52.3 3.3 25 83-107 32-56 (253)
459 cd03250 ABCC_MRP_domain1 Domai 96.1 0.0054 1.2E-07 52.1 3.5 27 82-108 29-55 (204)
460 PRK14250 phosphate ABC transpo 96.1 0.0052 1.1E-07 53.7 3.5 26 83-108 28-53 (241)
461 TIGR01978 sufC FeS assembly AT 96.1 0.0052 1.1E-07 53.6 3.5 25 83-107 25-49 (243)
462 TIGR03410 urea_trans_UrtE urea 96.1 0.0053 1.1E-07 53.2 3.4 26 83-108 25-50 (230)
463 PRK14247 phosphate ABC transpo 96.1 0.0053 1.2E-07 53.9 3.5 26 83-108 28-53 (250)
464 cd03268 ABC_BcrA_bacitracin_re 96.1 0.0057 1.2E-07 52.1 3.6 25 83-107 25-49 (208)
465 cd03218 ABC_YhbG The ABC trans 96.1 0.0056 1.2E-07 53.1 3.5 26 83-108 25-50 (232)
466 PRK14242 phosphate transporter 96.1 0.0054 1.2E-07 54.0 3.5 25 83-107 31-55 (253)
467 TIGR02323 CP_lyasePhnK phospho 96.1 0.0054 1.2E-07 54.0 3.4 26 83-108 28-53 (253)
468 PRK11248 tauB taurine transpor 96.1 0.0055 1.2E-07 54.1 3.5 26 83-108 26-51 (255)
469 PRK11264 putative amino-acid A 96.1 0.0056 1.2E-07 53.7 3.6 26 83-108 28-53 (250)
470 PRK11124 artP arginine transpo 96.1 0.0057 1.2E-07 53.5 3.5 26 83-108 27-52 (242)
471 PRK10584 putative ABC transpor 96.1 0.0058 1.2E-07 52.9 3.5 26 83-108 35-60 (228)
472 COG0467 RAD55 RecA-superfamily 96.1 0.006 1.3E-07 54.0 3.7 33 84-116 23-60 (260)
473 PF01078 Mg_chelatase: Magnesi 96.1 0.0056 1.2E-07 52.0 3.3 25 84-108 22-46 (206)
474 TIGR03771 anch_rpt_ABC anchore 96.1 0.0058 1.3E-07 52.8 3.5 26 83-108 5-30 (223)
475 PRK11889 flhF flagellar biosyn 96.1 0.0063 1.4E-07 56.8 3.9 26 83-108 240-265 (436)
476 TIGR02770 nickel_nikD nickel i 96.0 0.0057 1.2E-07 53.1 3.4 26 83-108 11-36 (230)
477 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.0059 1.3E-07 49.0 3.3 27 82-108 24-50 (144)
478 cd03214 ABC_Iron-Siderophores_ 96.0 0.0063 1.4E-07 50.7 3.6 26 83-108 24-49 (180)
479 PRK13539 cytochrome c biogenes 96.0 0.0061 1.3E-07 52.0 3.5 26 83-108 27-52 (207)
480 PRK11331 5-methylcytosine-spec 96.0 0.0056 1.2E-07 58.0 3.5 26 84-109 194-219 (459)
481 cd03216 ABC_Carb_Monos_I This 96.0 0.0064 1.4E-07 49.9 3.5 26 83-108 25-50 (163)
482 cd03215 ABC_Carb_Monos_II This 96.0 0.0062 1.3E-07 50.9 3.4 26 83-108 25-50 (182)
483 cd03114 ArgK-like The function 96.0 0.0059 1.3E-07 49.4 3.2 22 87-108 2-23 (148)
484 PF00437 T2SE: Type II/IV secr 96.0 0.0059 1.3E-07 54.3 3.5 27 82-108 125-151 (270)
485 TIGR00959 ffh signal recogniti 96.0 0.0074 1.6E-07 57.3 4.2 35 82-116 97-137 (428)
486 cd03254 ABCC_Glucan_exporter_l 96.0 0.0063 1.4E-07 52.6 3.5 26 83-108 28-53 (229)
487 TIGR03005 ectoine_ehuA ectoine 96.0 0.0062 1.3E-07 53.6 3.5 26 83-108 25-50 (252)
488 cd03237 ABC_RNaseL_inhibitor_d 96.0 0.0063 1.4E-07 53.5 3.5 26 83-108 24-49 (246)
489 cd03234 ABCG_White The White s 96.0 0.0066 1.4E-07 52.5 3.6 27 82-108 31-57 (226)
490 PRK11701 phnK phosphonate C-P 96.0 0.006 1.3E-07 53.9 3.4 26 83-108 31-56 (258)
491 PRK10744 pstB phosphate transp 96.0 0.0062 1.3E-07 53.9 3.5 26 83-108 38-63 (260)
492 PRK09493 glnQ glutamine ABC tr 96.0 0.0064 1.4E-07 53.1 3.5 26 83-108 26-51 (240)
493 PRK10908 cell division protein 96.0 0.0066 1.4E-07 52.3 3.5 26 83-108 27-52 (222)
494 PRK10771 thiQ thiamine transpo 96.0 0.0063 1.4E-07 52.8 3.4 26 83-108 24-49 (232)
495 cd03233 ABC_PDR_domain1 The pl 96.0 0.006 1.3E-07 51.9 3.2 27 82-108 31-57 (202)
496 TIGR01184 ntrCD nitrate transp 96.0 0.0066 1.4E-07 52.7 3.5 26 83-108 10-35 (230)
497 cd03266 ABC_NatA_sodium_export 96.0 0.0066 1.4E-07 52.1 3.5 26 83-108 30-55 (218)
498 smart00173 RAS Ras subfamily o 96.0 0.0067 1.4E-07 49.1 3.4 21 86-106 2-22 (164)
499 PRK10895 lipopolysaccharide AB 96.0 0.0066 1.4E-07 53.0 3.5 26 83-108 28-53 (241)
500 cd03297 ABC_ModC_molybdenum_tr 96.0 0.0059 1.3E-07 52.3 3.2 24 85-108 24-47 (214)
No 1
>PLN02674 adenylate kinase
Probab=100.00 E-value=1.2e-38 Score=276.63 Aligned_cols=203 Identities=37% Similarity=0.694 Sum_probs=189.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE 163 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~ 163 (303)
.++|+|.|+|||||+|+|+.|+++||+.||++++++++++..+++.|..+.+++..|..+|++.+..++.+++.+..+ .
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~-~ 109 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC-Q 109 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc-C
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999988766 5
Q ss_pred CcEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH----hhhc
Q 022042 164 NGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLT 235 (303)
Q Consensus 164 ~~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~----~rL~ 235 (303)
+|||+||||++..|++.|++ .+..+|.+|+|++|.+++.+|+..|+.|+.+|+.||..|+||..++.+ ++|.
T Consensus 110 ~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L~ 189 (244)
T PLN02674 110 KGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 189 (244)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCccc
Confidence 89999999999999998765 357899999999999999999999999999999999999999877654 3788
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHH
Q 022042 236 KRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL 287 (303)
Q Consensus 236 ~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l 287 (303)
+|.||.++.+++|++.|+++..++.++|.. .++.||+++++++|+++|..+|
T Consensus 190 ~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 190 QRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred cCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999976 6889999999999999998876
No 2
>PLN02459 probable adenylate kinase
Probab=100.00 E-value=2.6e-36 Score=263.05 Aligned_cols=206 Identities=34% Similarity=0.559 Sum_probs=187.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC-C
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD-S 161 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~-~ 161 (303)
+++.|+|.|+|||||||+|+.|+++||+.+|++++++++++..+++.|..++.++..|..+|++++..++.+++.+.. +
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~ 107 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEE 107 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhccccc
Confidence 346788999999999999999999999999999999999999999999999999999999999999999999998752 3
Q ss_pred CCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccC-------------CCCCc-
Q 022042 162 QENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKY-------------SPPET- 227 (303)
Q Consensus 162 ~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~-------------~~p~~- 227 (303)
...||||||||++..|++.|.... .++.||+|+++.+++++|+..|+.++.||+.||..+ +||..
T Consensus 108 ~~~g~iLDGFPRt~~Qa~~Le~~~-~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~~ 186 (261)
T PLN02459 108 GESGFILDGFPRTVRQAEILEGVT-DIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLP 186 (261)
T ss_pred CCceEEEeCCCCCHHHHHHHHhcC-CCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCCCCC
Confidence 468999999999999999998764 689999999999999999999999999999999853 55432
Q ss_pred -hHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042 228 -DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN 289 (303)
Q Consensus 228 -~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~ 289 (303)
+.+..+|.+|.+|.++.+++|++.|+++..++.++|.. .++.||+++++++|+++|.++|..
T Consensus 187 ~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~ 251 (261)
T PLN02459 187 PPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNL 251 (261)
T ss_pred CcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhch
Confidence 34567899999999999999999999999999999976 688999999999999999998864
No 3
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=6.4e-36 Score=257.15 Aligned_cols=201 Identities=50% Similarity=0.801 Sum_probs=186.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCCcE
Q 022042 87 IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 166 (303)
Q Consensus 87 I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~ 166 (303)
|+|.|+|||||||+|+.|+++||+.+|++++++++.+...++.+..+.+++..|..++++++..++.+++.+....+.+|
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~ 81 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGF 81 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcE
Confidence 78999999999999999999999999999999999998889999999999999999999999999999998865546899
Q ss_pred EEcCCCCCHHHHHHHHHhCC-CCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchH----HHhhhccCCCCc
Q 022042 167 LLDGYPRSLSQATALKKYGF-QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDE----IAARLTKRFDDT 241 (303)
Q Consensus 167 Vldg~p~~~~~~~~l~~~~~-~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~----i~~rL~~r~~d~ 241 (303)
||||||++..|++.|.+... .++.+|+|++|++++.+|+.+|+.|+.||+.||..++||..++ ..++|..|.+|.
T Consensus 82 ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD~ 161 (210)
T TIGR01351 82 ILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDT 161 (210)
T ss_pred EEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCCC
Confidence 99999999999999988766 6999999999999999999999999999999999999987554 346788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHH
Q 022042 242 EEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL 287 (303)
Q Consensus 242 ~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l 287 (303)
++.+++|++.|+++..++.++|.. .++.||+++++++|++.|.+.|
T Consensus 162 ~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 162 EEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 999999999999999999999976 6889999999999999998876
No 4
>PRK14526 adenylate kinase; Provisional
Probab=100.00 E-value=1.3e-35 Score=254.11 Aligned_cols=203 Identities=29% Similarity=0.538 Sum_probs=186.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~ 164 (303)
|.|+|+|+|||||||+|+.|++.|++.++++++++++....+++.+..+.+++..|..+|++.+..++.+++....+ .+
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~-~~ 79 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKN-ND 79 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccc-cC
Confidence 36889999999999999999999999999999999999988999999999999999999999999999999987765 68
Q ss_pred cEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH----hhhccCCCC
Q 022042 165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTKRFDD 240 (303)
Q Consensus 165 ~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~----~rL~~r~~d 240 (303)
+|||||||++..|++.|.+... ...+|+|++|++++.+|+..|+.|+.||+.||..++||..++.+ .+|.+|.||
T Consensus 80 g~ilDGfPR~~~Qa~~l~~~~~-~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD 158 (211)
T PRK14526 80 NFILDGFPRNINQAKALDKFLP-NIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDD 158 (211)
T ss_pred cEEEECCCCCHHHHHHHHHhcC-CCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCC
Confidence 8999999999999999987532 24688899999999999999999999999999999999877654 578899999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042 241 TEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN 289 (303)
Q Consensus 241 ~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~ 289 (303)
.+|.+++|++.|+++..++.++|.. .++.||+++++++|+++|.+.|.+
T Consensus 159 ~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~ 209 (211)
T PRK14526 159 KEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK 209 (211)
T ss_pred CHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 9999999999999999999999975 688999999999999999998864
No 5
>PRK00279 adk adenylate kinase; Reviewed
Probab=100.00 E-value=8.4e-35 Score=251.10 Aligned_cols=204 Identities=46% Similarity=0.834 Sum_probs=187.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~ 164 (303)
|+|+|.|+|||||||+|+.|+++||+.++++++++++.+..+++.+..+.+++..|..++++.+..++.+++.+..+ .+
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~-~~ 79 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDC-KN 79 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCc-cC
Confidence 47999999999999999999999999999999999999998999999999999999999999999999999988765 45
Q ss_pred cEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHh----hhcc
Q 022042 165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAA----RLTK 236 (303)
Q Consensus 165 ~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~----rL~~ 236 (303)
+|||||||++..|+..|.+ .+..++.+|+|+++.+++.+|+..|..|+.||..||..++||..++.+. +|..
T Consensus 80 g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~ 159 (215)
T PRK00279 80 GFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQ 159 (215)
T ss_pred CEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccC
Confidence 8999999999999988843 4567899999999999999999999999999999999999998776653 4788
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042 237 RFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN 289 (303)
Q Consensus 237 r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~ 289 (303)
|.+|.++.+++|+..|+.+..++.++|.. .++.||++.++++|+++|.+.|..
T Consensus 160 r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 160 RADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred CCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999986 588999999999999999998763
No 6
>PRK14529 adenylate kinase; Provisional
Probab=100.00 E-value=9.5e-35 Score=249.45 Aligned_cols=201 Identities=35% Similarity=0.577 Sum_probs=176.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~ 164 (303)
|.|+|.|+|||||||+|+.|+++||+.+++.++++++.+..+++.+..+++++..|..+|++++..++.+++.+.. .+
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~--~~ 78 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDG--KN 78 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccC--CC
Confidence 4689999999999999999999999999999999999988899999999999999999999999999999998876 68
Q ss_pred cEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCC-CCCchH-----HHhhh
Q 022042 165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYS-PPETDE-----IAARL 234 (303)
Q Consensus 165 ~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~-~p~~~~-----i~~rL 234 (303)
||||||||++..|++.|.. .+..||.+|+|++|.+++.+|+..|+.++.+|..|+..+. ||..++ +.++|
T Consensus 79 g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l 158 (223)
T PRK14529 79 GWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGEL 158 (223)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCcc
Confidence 9999999999999998765 4678999999999999999999999999998876655544 443322 23578
Q ss_pred ccCCCCc-HHHHHHHHHHHHHH---HHHHHHHhhc-------ceEEEcCCCCHHHHHHHHHHHH
Q 022042 235 TKRFDDT-EEKVKLRLKTHHHN---VEAVLSLYED-------VTVEVNGSVNKEDVFAQIDVAL 287 (303)
Q Consensus 235 ~~r~~d~-~e~~~~r~~~~~~~---~~~~~~~~~~-------~~~~Id~~~s~eev~~~I~~~l 287 (303)
.+|.||. +|.+++|++.|+++ ..++.++|.. .++.||+++++++|+++|.++|
T Consensus 159 ~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l 222 (223)
T PRK14529 159 STRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL 222 (223)
T ss_pred ccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 8999996 78999999999987 4477788872 6899999999999999998876
No 7
>PTZ00088 adenylate kinase 1; Provisional
Probab=100.00 E-value=3.5e-34 Score=247.93 Aligned_cols=204 Identities=34% Similarity=0.607 Sum_probs=180.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCC-C
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP-D 160 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~-~ 160 (303)
+.||.|+|+|+|||||||+|+.|+++||+.+|++|+++++.+..+++.+..+++++..|..+|++.+..++.+++.+. .
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~ 83 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTD 83 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhcc
Confidence 456889999999999999999999999999999999999999888999999999999999999999999999999873 3
Q ss_pred CCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceeccc------C-CCCCc----hH
Q 022042 161 SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVK------Y-SPPET----DE 229 (303)
Q Consensus 161 ~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~------~-~~p~~----~~ 229 (303)
+...+|||||||++..|+..+.+.. .++++|+|+++.+++++|+..|+.|+.||+.||.. + .||.. .+
T Consensus 84 ~~~~g~iLDGfPRt~~Qa~~l~~~~-~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c~ 162 (229)
T PTZ00088 84 DCFKGFILDGFPRNLKQCKELGKIT-NIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCE 162 (229)
T ss_pred ccCceEEEecCCCCHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCccc
Confidence 3468899999999999999987654 79999999999999999999999999999999986 3 33321 11
Q ss_pred HH---hhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhc--c-eEEE---cCCCCHHHHHHHHHHH
Q 022042 230 IA---ARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED--V-TVEV---NGSVNKEDVFAQIDVA 286 (303)
Q Consensus 230 i~---~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~-~~~I---d~~~s~eev~~~I~~~ 286 (303)
.+ ++|.+|.||.++.+++|++.|+++..++.++|.. . ++.+ |+++++++|++.|.+.
T Consensus 163 ~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 228 (229)
T PTZ00088 163 GCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQR 228 (229)
T ss_pred ccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhh
Confidence 11 3788999999999999999999999999999975 5 6666 7999999999988764
No 8
>PLN02842 nucleotide kinase
Probab=100.00 E-value=3.6e-34 Score=269.22 Aligned_cols=208 Identities=61% Similarity=1.000 Sum_probs=197.3
Q ss_pred EEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCCcEEE
Q 022042 89 ISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLL 168 (303)
Q Consensus 89 I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~Vl 168 (303)
|+|+|||||||+|+.|+++||+.+++++++++.++..+++.|..+++++..|..++++.+..++.+++....+..++|||
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~IL 81 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWLL 81 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999876655688999
Q ss_pred cCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHH
Q 022042 169 DGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLR 248 (303)
Q Consensus 169 dg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r 248 (303)
||||++..|++.|.+.+..||++|+|+++++++++|+.+|..|+.||..||..++||..++...+|..|.+|.++.+++|
T Consensus 82 DGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~IkkR 161 (505)
T PLN02842 82 DGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKAR 161 (505)
T ss_pred eCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHHHH
Confidence 99999999999998888889999999999999999999999999999999999999998888889999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHhhhh
Q 022042 249 LKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKS 296 (303)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~~~~ 296 (303)
++.|+++..++.++|.+.++.||++.++++|+++|.+.|.+.+.++..
T Consensus 162 L~~Y~~~t~pIl~~Y~~rl~~IDAsqs~EeVfeeI~~iL~~~L~~~~~ 209 (505)
T PLN02842 162 LQIYKKNAEAILSTYSDIMVKIDGNRPKEVVFEEISSLLSQIQKDATK 209 (505)
T ss_pred HHHHHHHhhhHHHhcCcEEEEEECCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999988999999999999999999999998887654
No 9
>PRK14530 adenylate kinase; Provisional
Probab=100.00 E-value=1.2e-32 Score=237.74 Aligned_cols=199 Identities=41% Similarity=0.715 Sum_probs=177.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH-----HcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEI-----AAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP 159 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~-----~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~ 159 (303)
++|+|+|+|||||||+|+.|+++||+.+++++++++... ..++.++. +.+++..|..++++....++...+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~- 81 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD- 81 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc-
Confidence 379999999999999999999999999999999999876 23444554 66778899999999888888877654
Q ss_pred CCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHh----hhc
Q 022042 160 DSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAA----RLT 235 (303)
Q Consensus 160 ~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~----rL~ 235 (303)
..+||+||||++..+++.|.... .++++|+|++|.+++++|+.+|+.++.+|+.||..++||..++.++ ||.
T Consensus 82 ---~~~~IldG~pr~~~q~~~l~~~~-~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~ 157 (215)
T PRK14530 82 ---ADGFVLDGYPRNLEQAEYLESIT-DLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELI 157 (215)
T ss_pred ---CCCEEEcCCCCCHHHHHHHHHhc-CCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCccc
Confidence 46899999999999998887643 5899999999999999999999999999999999999998887766 899
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042 236 KRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN 289 (303)
Q Consensus 236 ~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~ 289 (303)
.|.+|.++.+++|+..|+++..++.++|.. .++.||+++++++|++.|...|.+
T Consensus 158 ~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 213 (215)
T PRK14530 158 QRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD 213 (215)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999976 688999999999999999988864
No 10
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-32 Score=223.05 Aligned_cols=185 Identities=40% Similarity=0.711 Sum_probs=169.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHc-CCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCC
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA-GSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP 159 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~-~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~ 159 (303)
...+++|+|.|+|||||.|+|..++++||+.|+|+++++|..... +++.|..+++++.+|..+|.+++..++++.+.+.
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~ 84 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSS 84 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhc
Confidence 456789999999999999999999999999999999999999988 9999999999999999999999999999999887
Q ss_pred CCCCCcEEEcCCCCCHHHHHHHHHhCC-CCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCC
Q 022042 160 DSQENGWLLDGYPRSLSQATALKKYGF-QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF 238 (303)
Q Consensus 160 ~~~~~~~Vldg~p~~~~~~~~l~~~~~-~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~ 238 (303)
.. .++++|||||+..+|...|++.-. .+++++|+||+.|++++|+..|... ..|.
T Consensus 85 ~~-~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~-----------------------~~R~ 140 (195)
T KOG3079|consen 85 GD-SNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQS-----------------------NSRS 140 (195)
T ss_pred CC-CCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhccc-----------------------CCCC
Confidence 65 345999999999999999998655 6999999999999999999999631 1267
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042 239 DDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN 289 (303)
Q Consensus 239 ~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~ 289 (303)
||+.+.+++|++.|+....+++++|+. ++..|+++.++++|+.++...+..
T Consensus 141 DDn~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 141 DDNEESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred CCchHHHHHHHHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999999999987 888999999999999999988754
No 11
>PRK13808 adenylate kinase; Provisional
Probab=100.00 E-value=1e-31 Score=241.82 Aligned_cols=190 Identities=36% Similarity=0.629 Sum_probs=169.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~ 164 (303)
|.|+|+|+|||||||+|+.|++.||+.+|+++++++..+..+++.+..+.+++..|..+|++++..++.+++.+..+ ..
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~-~~ 79 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDA-AN 79 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc-cC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999988776 67
Q ss_pred cEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCC-CCceecccCCCCCchHHHhhhccCCC
Q 022042 165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPV-TGKIYHVKYSPPETDEIAARLTKRFD 239 (303)
Q Consensus 165 ~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~-~g~~~~~~~~~p~~~~i~~rL~~r~~ 239 (303)
||||||||++..|++.|+. .+..||++|+|++|++++++|+..|..+.. +| ...|.+
T Consensus 80 G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg------------------~~~R~D 141 (333)
T PRK13808 80 GFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARG------------------EEVRAD 141 (333)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccC------------------CccCCC
Confidence 9999999999999987764 456899999999999999999998853211 11 124678
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 022042 240 DTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNLLEQ 293 (303)
Q Consensus 240 d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~~l~~ 293 (303)
|.++.+.+|+..|+++..++.++|.+ .++.||++.++++|+++|...|..++..
T Consensus 142 D~~E~i~kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~~ 197 (333)
T PRK13808 142 DTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGAA 197 (333)
T ss_pred CCHHHHHHHHHHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhCC
Confidence 88999999999999999999999987 6889999999999999999999987764
No 12
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=99.98 E-value=2.9e-31 Score=225.55 Aligned_cols=213 Identities=43% Similarity=0.783 Sum_probs=195.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~ 162 (303)
++..++|.|+||+||+|+|.+|++.|++.|++++++++..+..+++.+..+.+.+..|..++|+++..++...+....+
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~- 92 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRC- 92 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhcccccc-
Confidence 6778999999999999999999999999999999999999999999999999999999999999999977777777755
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCc---hHHHh-hhccCC
Q 022042 163 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPET---DEIAA-RLTKRF 238 (303)
Q Consensus 163 ~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~---~~i~~-rL~~r~ 238 (303)
.++|++||||++..++..+.+.+..+|.||.|++|++.+.+|+..|+.|+.+|+.||..|+||.. +++.. .|.+|.
T Consensus 93 ~~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr~ 172 (235)
T KOG3078|consen 93 QKGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQRE 172 (235)
T ss_pred ccccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcCc
Confidence 68999999999999999999989999999999999999999999999999999999999999998 55544 499999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHHHHHhhhhc
Q 022042 239 DDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNLLEQRKSA 297 (303)
Q Consensus 239 ~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~~l~~~~~~ 297 (303)
+|.++.+++|++.|+++..++.++|.. .+..+++.. .++||..+...+.+.+.++.+.
T Consensus 173 dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~~~~~~~ 232 (235)
T KOG3078|consen 173 DDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKVPEREQK 232 (235)
T ss_pred cccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhhhhhhhh
Confidence 999999999999999999999999976 566777777 8999999999999888776543
No 13
>PRK14528 adenylate kinase; Provisional
Probab=99.97 E-value=4.1e-30 Score=216.77 Aligned_cols=179 Identities=36% Similarity=0.610 Sum_probs=162.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE 163 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~ 163 (303)
|++|+|+|+|||||||+|+.|+++||+++++++++++..+..+++.+..+..++..|..++++.+..++.+++.+..+ .
T Consensus 1 ~~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~-~ 79 (186)
T PRK14528 1 MKNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADC-K 79 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCc-c
Confidence 367999999999999999999999999999999999999999999999999999999999999999999999988766 5
Q ss_pred CcEEEcCCCCCHHHHHHHHHh----CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042 164 NGWLLDGYPRSLSQATALKKY----GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD 239 (303)
Q Consensus 164 ~~~Vldg~p~~~~~~~~l~~~----~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~ 239 (303)
.+||+||||++..|++.+++. +..+|.+|+|++|++++.+|+..|... ..|.+
T Consensus 80 ~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~-----------------------~gr~d 136 (186)
T PRK14528 80 NGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEI-----------------------EGRAD 136 (186)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccc-----------------------cCCCC
Confidence 789999999999999987653 467999999999999999999998632 24568
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHH
Q 022042 240 DTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVA 286 (303)
Q Consensus 240 d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~ 286 (303)
|.+|.+.+|+..|+....++.++|.. .++.||+++++++|++.|.+.
T Consensus 137 d~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~ 185 (186)
T PRK14528 137 DNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKE 185 (186)
T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHh
Confidence 88999999999999999999999975 799999999999999988764
No 14
>PRK14532 adenylate kinase; Provisional
Probab=99.97 E-value=1.3e-29 Score=214.16 Aligned_cols=180 Identities=41% Similarity=0.665 Sum_probs=160.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~ 164 (303)
|.|+|.|+|||||||+|+.|+++||+.++++|+++++.+..+++.+..+++++..|..++++.+..++.+.+....+ ++
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 79 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEA-AG 79 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc-cC
Confidence 36899999999999999999999999999999999999988899999999999999999999999999999977765 78
Q ss_pred cEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042 165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD 240 (303)
Q Consensus 165 ~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d 240 (303)
+||+||||++..|++.+.+ .+..||++|+|++|++++.+|+.+|..+ ..|.++
T Consensus 80 g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~-----------------------~~r~dd 136 (188)
T PRK14532 80 GAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEE-----------------------QGRPDD 136 (188)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCc-----------------------CCCCCC
Confidence 9999999999999987653 4678999999999999999999988521 135677
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHH
Q 022042 241 TEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALT 288 (303)
Q Consensus 241 ~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~ 288 (303)
..+.+.+|+..|+.+..++.++|.. .++.||+++++++|+++|.+.|.
T Consensus 137 ~~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 137 NPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence 7888999999999999999888865 67889999999999999998874
No 15
>PRK14531 adenylate kinase; Provisional
Probab=99.97 E-value=1.4e-29 Score=213.08 Aligned_cols=174 Identities=34% Similarity=0.623 Sum_probs=156.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~ 164 (303)
++|+|+|+|||||||+|+.|+++||+.+|++++++++.+..+++.+..+..++..|..++++.+..++.+.+.... ++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~--~~ 80 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALN--SG 80 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcc--CC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999888886643 57
Q ss_pred cEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042 165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD 240 (303)
Q Consensus 165 ~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d 240 (303)
+|||||||++..|+..|+. .+..++.+|+|+||++++.+|+..|. |.+|
T Consensus 81 g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~---------------------------r~dD 133 (183)
T PRK14531 81 GWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG---------------------------RADD 133 (183)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC---------------------------CCCC
Confidence 8999999999999987765 35568999999999999999999884 3467
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHH
Q 022042 241 TEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL 287 (303)
Q Consensus 241 ~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l 287 (303)
.++.+.+|+..|++...++.++|.. .++.||+++++++|+++|.+.|
T Consensus 134 ~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 134 NEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 7899999999999999999999975 6889999999999999998775
No 16
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.97 E-value=8.6e-30 Score=216.03 Aligned_cols=189 Identities=47% Similarity=0.839 Sum_probs=170.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCCc
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENG 165 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~ 165 (303)
+|+|+|+|||||||+|+.|+++||+.++++++++++.+...++.+..+.+.+..+..++++.+..++...+.... .+.+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~-~~~~ 79 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPD-CKKG 79 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhccc-ccCC
Confidence 478999999999999999999999999999999999988888899999999999999999999999999887765 3578
Q ss_pred EEEcCCCCCHHHHHHHHHhCC---CCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcH
Q 022042 166 WLLDGYPRSLSQATALKKYGF---QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTE 242 (303)
Q Consensus 166 ~Vldg~p~~~~~~~~l~~~~~---~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~ 242 (303)
||+||||++..|+..|.+... .++++|+|++|++++.+|+.+|..++.+|..||. +..+....+|..|.+|..
T Consensus 80 ~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~----~~~~~~~~~l~~r~dd~~ 155 (194)
T cd01428 80 FILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHL----GKDDVTGEPLSQRSDDNE 155 (194)
T ss_pred EEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCc----CCCcccCCccccCCCCCH
Confidence 999999999999999988665 7999999999999999999999999999999998 333345667888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--cceEEEcCCCCHHHH
Q 022042 243 EKVKLRLKTHHHNVEAVLSLYE--DVTVEVNGSVNKEDV 279 (303)
Q Consensus 243 e~~~~r~~~~~~~~~~~~~~~~--~~~~~Id~~~s~eev 279 (303)
+.+++|+..|+.+..++.++|. ..++.||+++++++|
T Consensus 156 ~~i~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v 194 (194)
T cd01428 156 ETIKKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV 194 (194)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence 9999999999999999999998 478899999988764
No 17
>PRK14527 adenylate kinase; Provisional
Probab=99.97 E-value=7.1e-29 Score=210.27 Aligned_cols=182 Identities=36% Similarity=0.627 Sum_probs=162.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~ 160 (303)
..++++|+|.|+|||||||+|+.|+++||+.+++.+++++.....+++.+..+..++..|..++++.+..++.+.+....
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~ 82 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGME 82 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence 34678999999999999999999999999999999999999988888999999999999999999999999999887765
Q ss_pred CCCCcEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhcc
Q 022042 161 SQENGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTK 236 (303)
Q Consensus 161 ~~~~~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~ 236 (303)
+ .+||+||||++..|++.+.. .+..++.+|+|++|++++.+|+.+|... ..
T Consensus 83 ~--~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~-----------------------~~ 137 (191)
T PRK14527 83 P--VRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQ-----------------------EG 137 (191)
T ss_pred C--CcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCccc-----------------------CC
Confidence 4 57999999999999887654 4567889999999999999999998521 24
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHH
Q 022042 237 RFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL 287 (303)
Q Consensus 237 r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l 287 (303)
|.+|.++.+.+|++.|+++..++.++|.+ .++.||+++++++|+++|...|
T Consensus 138 r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 138 RSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred CCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 66788999999999999999999999985 6899999999999999998775
No 18
>PLN02200 adenylate kinase family protein
Probab=99.97 E-value=1.1e-28 Score=214.79 Aligned_cols=185 Identities=32% Similarity=0.632 Sum_probs=164.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~ 161 (303)
+.+++|+|+|+|||||||+|+.|+++||+.||++++++++.+...++.+..+.+.+..|..++++.+..++.+++....
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~- 119 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSD- 119 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-
Confidence 4567999999999999999999999999999999999999998888899999999999999999999888888887543
Q ss_pred CCCcEEEcCCCCCHHHHHHHHHh-CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042 162 QENGWLLDGYPRSLSQATALKKY-GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD 240 (303)
Q Consensus 162 ~~~~~Vldg~p~~~~~~~~l~~~-~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d 240 (303)
+.+|||||||++..|+..+.+. +..||.+|+|+++++++.+|+.+|+. .|.++
T Consensus 120 -~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~-------------------------~r~dd 173 (234)
T PLN02200 120 -NNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQ-------------------------GRVDD 173 (234)
T ss_pred -CCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcC-------------------------CCCCC
Confidence 4689999999999999888764 45799999999999999999998852 24466
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 022042 241 TEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNLLEQ 293 (303)
Q Consensus 241 ~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~~l~~ 293 (303)
..+.+++|++.|.+...++.++|.. .++.||+++++++|++.|.+.+...+..
T Consensus 174 ~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~~~~~ 228 (234)
T PLN02200 174 NIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAACEAM 228 (234)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcCCc
Confidence 7899999999999999999999975 6899999999999999999998876543
No 19
>PRK02496 adk adenylate kinase; Provisional
Probab=99.97 E-value=2.4e-28 Score=205.82 Aligned_cols=176 Identities=38% Similarity=0.705 Sum_probs=158.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE 163 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~ 163 (303)
|++|+|+|+|||||||+|+.|+++||+.++++++++++.+..+++.+..+..++..|..++++.+..++.+++.+..+ .
T Consensus 1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~-~ 79 (184)
T PRK02496 1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDA-A 79 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc-c
Confidence 468999999999999999999999999999999999999988899999999999999999999999999999987666 4
Q ss_pred CcEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042 164 NGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD 239 (303)
Q Consensus 164 ~~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~ 239 (303)
.+||+||||++..|+..+.. .+..|+++|+|++|++++.+|+..|. +.+
T Consensus 80 ~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~---------------------------~~d 132 (184)
T PRK02496 80 NGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARG---------------------------RKD 132 (184)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCC---------------------------CCC
Confidence 78999999999999877765 34579999999999999999999884 235
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHH
Q 022042 240 DTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL 287 (303)
Q Consensus 240 d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l 287 (303)
+.++.+++|+..|+.+..++.++|.. .++.||+++++++|+++|...|
T Consensus 133 d~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l 182 (184)
T PRK02496 133 DTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAAL 182 (184)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 66889999999999999999999964 6789999999999999998876
No 20
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.97 E-value=1.7e-28 Score=206.45 Aligned_cols=177 Identities=33% Similarity=0.649 Sum_probs=156.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCCc
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENG 165 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~ 165 (303)
+|+|+|+|||||||+|+.|+++||+.++++++++++.+..+++.+..+++++..|..+|++.+..++.+.+.... +.+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~--~~~ 78 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADG--SKK 78 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccC--CCc
Confidence 478999999999999999999999999999999999988888899999999999999999999999988887654 678
Q ss_pred EEEcCCCCCHHHHHHHHHh---CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcH
Q 022042 166 WLLDGYPRSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTE 242 (303)
Q Consensus 166 ~Vldg~p~~~~~~~~l~~~---~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~ 242 (303)
||+||||++..++..|.+. +..||.+|||++|++++.+|+.+|... ..+.++..
T Consensus 79 ~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~-----------------------~~r~dd~~ 135 (183)
T TIGR01359 79 FLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQS-----------------------SGRVDDNI 135 (183)
T ss_pred EEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCcc-----------------------CCCCCCCH
Confidence 9999999999999887653 357999999999999999999998521 12345678
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHH
Q 022042 243 EKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL 287 (303)
Q Consensus 243 e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l 287 (303)
+.+++|+..|.+...++.++|.. .++.||+++++++|+++|.+.+
T Consensus 136 e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 136 ESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence 89999999999999999998864 6889999999999999998775
No 21
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.96 E-value=5e-27 Score=198.00 Aligned_cols=183 Identities=40% Similarity=0.662 Sum_probs=159.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE 163 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~ 163 (303)
.++|+|+|+|||||||+|+.|+++||+.+++.+++++..+..+++.+..+...+..+..++++.+...+.+.+......+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTS 82 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcC
Confidence 35899999999999999999999999999999999999877777788888888888988998888888888877665567
Q ss_pred CcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHH
Q 022042 164 NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEE 243 (303)
Q Consensus 164 ~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e 243 (303)
.+||+||||++..++..+......|+++|||++|++++.+|+.+|.. ...|.++.++
T Consensus 83 ~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~-----------------------~~~r~d~~~~ 139 (188)
T TIGR01360 83 KGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAE-----------------------TSGRVDDNEK 139 (188)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccc-----------------------cCCCCCCCHH
Confidence 89999999999999998887666799999999999999999998852 1125567788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042 244 KVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN 289 (303)
Q Consensus 244 ~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~ 289 (303)
.+.+|+..|+.+..++.++|.. .++.||++.++++++++|...|+.
T Consensus 140 ~~~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 187 (188)
T TIGR01360 140 TIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAIDK 187 (188)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 9999999999999998888864 778899999999999999998864
No 22
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.96 E-value=3e-27 Score=196.99 Aligned_cols=173 Identities=47% Similarity=0.788 Sum_probs=160.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~ 164 (303)
|+|+|.|+|||||||+|+.|+++|+++|+|.+++++......++.+..++.++..|..++++.+...+..++.+.++..
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~- 79 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKA- 79 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccC-
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999988755
Q ss_pred cEEEcCCCCCHHHHHHHHHh----CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042 165 GWLLDGYPRSLSQATALKKY----GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD 240 (303)
Q Consensus 165 ~~Vldg~p~~~~~~~~l~~~----~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d 240 (303)
++|+||||++..++..+++. +..+|.++.++++.+.++.|+..|.. |.+|
T Consensus 80 ~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~--------------------------r~dd 133 (178)
T COG0563 80 GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV--------------------------REDD 133 (178)
T ss_pred eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc--------------------------cccC
Confidence 99999999999999988763 67889999999999999999998851 5688
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHH
Q 022042 241 TEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVAL 287 (303)
Q Consensus 241 ~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l 287 (303)
.++.+++|+..|++...++..+|. +.||+.++++++++.+.+.+
T Consensus 134 ~~~~~~~R~~~y~~~~~pli~~y~---~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 134 NEETVKKRLKVYHEQTAPLIEYYS---VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred CHHHHHHHHHHHHhcccchhhhhe---eeccCCCCHHHHHHHHHHhh
Confidence 999999999999999999999997 78999999999999998765
No 23
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.95 E-value=9.3e-27 Score=189.96 Aligned_cols=144 Identities=50% Similarity=0.891 Sum_probs=130.0
Q ss_pred EEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCCcEEE
Q 022042 89 ISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLL 168 (303)
Q Consensus 89 I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~Vl 168 (303)
|.|+|||||||+|+.|+++||+.+|++++++++.+..+++.|..+++.+.+|..+|++.+..++..++.+. ....||||
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~-~~~~g~il 79 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQP-PCNRGFIL 79 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSG-GTTTEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhh-cccceeee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999987 44799999
Q ss_pred cCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHH
Q 022042 169 DGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEK 244 (303)
Q Consensus 169 dg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~ 244 (303)
||||++..|+..|.+ ....|+.+|+|+|+++++.+|+.. |..+.
T Consensus 80 dGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~--------------------------------d~~~~ 127 (151)
T PF00406_consen 80 DGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ--------------------------------DNEEV 127 (151)
T ss_dssp ESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT--------------------------------GSHHH
T ss_pred eeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc--------------------------------CCHHH
Confidence 999999999999998 788999999999999999999875 34788
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 022042 245 VKLRLKTHHHNVEAVLSLYED 265 (303)
Q Consensus 245 ~~~r~~~~~~~~~~~~~~~~~ 265 (303)
+++|++.|+++..++.++|..
T Consensus 128 i~~Rl~~y~~~~~~i~~~y~~ 148 (151)
T PF00406_consen 128 IKKRLEEYRENTEPILDYYKE 148 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999964
No 24
>PRK01184 hypothetical protein; Provisional
Probab=99.81 E-value=8.6e-18 Score=141.41 Aligned_cols=176 Identities=19% Similarity=0.235 Sum_probs=117.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHc-CCc-----chHHHHHHHHcCCCcChHHHHHHHHHHHc
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA-GSE-----NGKRAKEHMEKGQLVPDEIVVTMVKERLS 157 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~-~~~-----~~~~i~~~~~~g~~~~~~~~~~~l~~~l~ 157 (303)
|++|+|+|+|||||||+++ +++++|++++++++++++.+.. +.+ ++....+.... +....+..++...+.
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~i~ 76 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKE---LGMDAVAKRTVPKIR 76 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHH---HChHHHHHHHHHHHH
Confidence 5689999999999999987 7789999999999999998643 221 34444333322 122333344444454
Q ss_pred CCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccC
Q 022042 158 QPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKR 237 (303)
Q Consensus 158 ~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r 237 (303)
. ..+..+|+||+ +...+.+.+.+....+..+|+|+||.+++.+|+..|... .
T Consensus 77 ~--~~~~~vvidg~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~-~------------------------ 128 (184)
T PRK01184 77 E--KGDEVVVIDGV-RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRS-D------------------------ 128 (184)
T ss_pred h--cCCCcEEEeCC-CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCC-C------------------------
Confidence 4 22577999999 788888777665434568999999999999999987410 0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 022042 238 FDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQ 293 (303)
Q Consensus 238 ~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~ 293 (303)
.....+.+.+|...+.. ....+.+...-++|+++++++++.+++.+.+..++..
T Consensus 129 d~~~~~~~~~r~~~q~~--~~~~~~~~~ad~vI~N~~~~~~l~~~v~~~~~~~~~~ 182 (184)
T PRK01184 129 DPKSWEELEERDERELS--WGIGEVIALADYMIVNDSTLEEFRARVRKLLERILRS 182 (184)
T ss_pred ChhhHHHHHHHHHHHhc--cCHHHHHHhcCEEEeCCCCHHHHHHHHHHHHHHHhcc
Confidence 00124555555544321 0012222233467788999999999999999877653
No 25
>PRK13973 thymidylate kinase; Provisional
Probab=99.77 E-value=8.1e-17 Score=138.69 Aligned_cols=179 Identities=22% Similarity=0.313 Sum_probs=112.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---CCceeeh--------HHHHHHHHHcC--CcchHHHHHHHHcCCCcChHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY---GLVHIAA--------GDLLRAEIAAG--SENGKRAKEHMEKGQLVPDEIVV 149 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~--------d~l~~~~~~~~--~~~~~~i~~~~~~g~~~~~~~~~ 149 (303)
++++|+|+|++||||||+++.|+++| |+.++.+ ++++++.+... ...+......+-.+ ...+.+.
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~ 79 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVE 79 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHH
Confidence 36799999999999999999999999 7777655 56666654431 11222222222111 0112223
Q ss_pred HHHHHHHcCCCCCCCcEEEcCC----------CC--CHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCC
Q 022042 150 TMVKERLSQPDSQENGWLLDGY----------PR--SLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVT 214 (303)
Q Consensus 150 ~~l~~~l~~~~~~~~~~Vldg~----------p~--~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~ 214 (303)
..+...+.. +..+|.|.| ++ ...++..+.. ....||++|||++|++++.+|+.+|......
T Consensus 80 ~~i~~~l~~----g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~ 155 (213)
T PRK13973 80 EVIRPALAR----GKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTP 155 (213)
T ss_pred HHHHHHHHC----CCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCcc
Confidence 334444433 445666753 22 2234444443 2357999999999999999999988521100
Q ss_pred CceecccCCCCCchHHHhhhccCCC-CcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042 215 GKIYHVKYSPPETDEIAARLTKRFD-DTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE 292 (303)
Q Consensus 215 g~~~~~~~~~p~~~~i~~rL~~r~~-d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~ 292 (303)
.+.+ +..+..+++.+.|.+. .+.|...+++||+++++++|.++|.++|.+.+.
T Consensus 156 ---------------------~~~e~~~~~~~~~~~~~y~~l----~~~~~~~~~~Ida~~~~e~V~~~I~~~i~~~~~ 209 (213)
T PRK13973 156 ---------------------DRFEKEDLAFHEKRREAFLQI----AAQEPERCVVIDATASPEAVAAEIWAAVDQRLL 209 (213)
T ss_pred ---------------------CchhhchHHHHHHHHHHHHHH----HHhCCCcEEEEcCCCCHHHHHHHHHHHHHHHHh
Confidence 0111 2345555556555543 344555678899999999999999999988765
No 26
>PRK13974 thymidylate kinase; Provisional
Probab=99.75 E-value=4.5e-17 Score=140.14 Aligned_cols=179 Identities=18% Similarity=0.250 Sum_probs=110.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceee--hHHHHHHHHHcCCcchHHHHHHHHc--CCCcChHHHHHHH--HH---
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIA--AGDLLRAEIAAGSENGKRAKEHMEK--GQLVPDEIVVTMV--KE--- 154 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~--~d~l~~~~~~~~~~~~~~i~~~~~~--g~~~~~~~~~~~l--~~--- 154 (303)
+.+|+|.|++||||||+++.|++.+.....- -..++......+++.|+.+++++.. +...++.....++ .+
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~ 82 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQ 82 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHH
Confidence 5799999999999999999999988421110 0011111123467788888888853 2233333322222 11
Q ss_pred ----HHcCCCCCCCcEEE----------cCCCCCH--HHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 022042 155 ----RLSQPDSQENGWLL----------DGYPRSL--SQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTG 215 (303)
Q Consensus 155 ----~l~~~~~~~~~~Vl----------dg~p~~~--~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g 215 (303)
.+......+..+|. +|+|+.. .++..+.. .+..||++|||+||++++.+|+..|..
T Consensus 83 ~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~d----- 157 (212)
T PRK13974 83 HVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKP----- 157 (212)
T ss_pred HHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccc-----
Confidence 12211122333343 4566543 23444433 356799999999999999999987631
Q ss_pred ceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 022042 216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNLLEQ 293 (303)
Q Consensus 216 ~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~~l~~ 293 (303)
| .+.++...|.+...+.+.+|.. .+++||+++++++|+++|.++|.+.+.+
T Consensus 158 ------------------------D---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~~~~ 210 (212)
T PRK13974 158 ------------------------D---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNNFSN 210 (212)
T ss_pred ------------------------C---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence 1 1223344455555555555543 6788999999999999999999987655
Q ss_pred h
Q 022042 294 R 294 (303)
Q Consensus 294 ~ 294 (303)
+
T Consensus 211 ~ 211 (212)
T PRK13974 211 K 211 (212)
T ss_pred c
Confidence 3
No 27
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.74 E-value=8.8e-17 Score=136.78 Aligned_cols=178 Identities=23% Similarity=0.352 Sum_probs=116.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---CCceeehHHHHHHHHHcCCcchHHHHHHHHcC-CCcChHHH--------HH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKG-QLVPDEIV--------VT 150 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g-~~~~~~~~--------~~ 150 (303)
++++|+|+|..||||||+++.|+++| |+.++-. ..+.+++.++.+++.+.++ ..+.+... .+
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~t------rEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~ 75 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLT------REPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQ 75 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE------eCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999988 4333311 1244677888888887775 23322221 12
Q ss_pred HHHHHHcCCCCCCCcEEEcCCCC------------CHHHHHHHHHhCC---CCcEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 022042 151 MVKERLSQPDSQENGWLLDGYPR------------SLSQATALKKYGF---QPDLFILLEVPEDTLVERVVGRRLDPVTG 215 (303)
Q Consensus 151 ~l~~~l~~~~~~~~~~Vldg~p~------------~~~~~~~l~~~~~---~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g 215 (303)
.+.+.+......+..+|.|.|-. ...+...+.+... .||+++|||+|+++.++|+.+|+..
T Consensus 76 h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~---- 151 (208)
T COG0125 76 HLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGEL---- 151 (208)
T ss_pred HHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCc----
Confidence 22333333333356677776422 2334443444444 8999999999999999999998631
Q ss_pred ceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042 216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE 292 (303)
Q Consensus 216 ~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~ 292 (303)
..+.+. ++. ..++..++.+..+.+.+...+++||++.++++|.++|.++|.+.+.
T Consensus 152 -------------------~~r~E~-~~~--~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~l~ 206 (208)
T COG0125 152 -------------------RDRFEK-EDD--EFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKERLG 206 (208)
T ss_pred -------------------cchhhh-HHH--HHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHHhhc
Confidence 001111 111 2233444455556666766789999999999999999999988764
No 28
>PRK08356 hypothetical protein; Provisional
Probab=99.73 E-value=9e-17 Score=136.55 Aligned_cols=174 Identities=17% Similarity=0.214 Sum_probs=107.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcC----C---cchHH----HHHHHHcCCCcCh----HHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAG----S---ENGKR----AKEHMEKGQLVPD----EIV 148 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~----~---~~~~~----i~~~~~~g~~~~~----~~~ 148 (303)
.++|+|+|+|||||||+|++|+ ++|+.+|++++.+++..... + ..+.. ...++..+..+++ +.+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~ 83 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDIL 83 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHH
Confidence 4689999999999999999996 58999999998655432221 0 11111 1233444444442 444
Q ss_pred HHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCch
Q 022042 149 VTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETD 228 (303)
Q Consensus 149 ~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~ 228 (303)
.....+.+.. ...+++||+ ++..++..|... ...+|||++|.+++.+|+.+|..... |
T Consensus 84 ~~~~~~~~~~----~~~ividG~-r~~~q~~~l~~~---~~~vi~l~~~~~~~~~Rl~~R~~~~~-----------~--- 141 (195)
T PRK08356 84 IRLAVDKKRN----CKNIAIDGV-RSRGEVEAIKRM---GGKVIYVEAKPEIRFERLRRRGAEKD-----------K--- 141 (195)
T ss_pred HHHHHHHhcc----CCeEEEcCc-CCHHHHHHHHhc---CCEEEEEECCHHHHHHHHHhcCCccc-----------c---
Confidence 4555555532 235999999 999999888764 24899999999999999998852100 0
Q ss_pred HHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042 229 EIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL 290 (303)
Q Consensus 229 ~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~ 290 (303)
+ ....+.+.+++..... ...........-++|+++.+++++.++|.+++..+
T Consensus 142 -----~----~~~~e~~~~~~~~~~~-l~~~~~~~~~aD~vI~N~~~~e~~~~~i~~~~~~~ 193 (195)
T PRK08356 142 -----G----IKSFEDFLKFDEWEEK-LYHTTKLKDKADFVIVNEGTLEELRKKVEEILREL 193 (195)
T ss_pred -----c----cccHHHHHHHHHHHHH-hhhhhhHHHhCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 0 0013333333221111 10011111122345667789999999999988764
No 29
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.72 E-value=1.2e-16 Score=135.67 Aligned_cols=165 Identities=21% Similarity=0.287 Sum_probs=107.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCC-----cCh-------------
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VPD------------- 145 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~-----~~~------------- 145 (303)
|++|+|+|++||||||+++.|++ +|++++++|.+.++.+..+.+....+.+.+..+.. +..
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 80 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA 80 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence 46899999999999999999988 99999999999999888777666666665543211 211
Q ss_pred -----HHHHHHHHHH----HcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 022042 146 -----EIVVTMVKER----LSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGK 216 (303)
Q Consensus 146 -----~~~~~~l~~~----l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~ 216 (303)
..+...+... +..... ...+|+|. |...+ . .+ ...+|.+|++++|++++.+|+.+|+
T Consensus 81 ~~~L~~i~hP~v~~~~~~~~~~~~~-~~~vv~e~-pll~e-~-~~---~~~~D~vi~V~a~~e~~~~Rl~~R~------- 146 (194)
T PRK00081 81 RKKLEAILHPLIREEILEQLQEAES-SPYVVLDI-PLLFE-N-GL---EKLVDRVLVVDAPPETQLERLMARD------- 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-CCEEEEEe-hHhhc-C-Cc---hhhCCeEEEEECCHHHHHHHHHHcC-------
Confidence 1122222222 222111 24466664 21111 0 01 1247999999999999999999884
Q ss_pred eecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHH
Q 022042 217 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTN 289 (303)
Q Consensus 217 ~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~ 289 (303)
..+.+.+..|+..+....... ....++|+++++++++.+++.+.+++
T Consensus 147 ----------------------~~s~e~~~~ri~~Q~~~~~~~----~~ad~vI~N~g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 147 ----------------------GLSEEEAEAIIASQMPREEKL----ARADDVIDNNGDLEELRKQVERLLQE 193 (194)
T ss_pred ----------------------CCCHHHHHHHHHHhCCHHHHH----HhCCEEEECCCCHHHHHHHHHHHHHh
Confidence 123456666666543322211 11236789999999999999888754
No 30
>PRK06217 hypothetical protein; Validated
Probab=99.72 E-value=3.5e-16 Score=131.60 Aligned_cols=169 Identities=20% Similarity=0.282 Sum_probs=103.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE 163 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~ 163 (303)
|++|+|+|++||||||+|+.|++++|+++++.|++++.. .+..+ +...+++.....+.+.+.. +
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~----~ 64 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP--TDPPF----------TTKRPPEERLRLLLEDLRP----R 64 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc--CCCCc----------cccCCHHHHHHHHHHHHhc----C
Confidence 478999999999999999999999999999999988641 11111 1112344444444444432 4
Q ss_pred CcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHH
Q 022042 164 NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEE 243 (303)
Q Consensus 164 ~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e 243 (303)
.+||+||++..... .+ ...+|.+|||++|.+++++|+.+|.... .|+. .. .. ... .....
T Consensus 65 ~~~vi~G~~~~~~~--~~---~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~-~~~~-~~-~~-~~~-----------e~~~~ 124 (183)
T PRK06217 65 EGWVLSGSALGWGD--PL---EPLFDLVVFLTIPPELRLERLRLREFQR-YGNR-IL-PG-GDM-----------HKASL 124 (183)
T ss_pred CCEEEEccHHHHHH--HH---HhhCCEEEEEECCHHHHHHHHHcCcccc-cCcc-cC-CC-CCH-----------HHHHH
Confidence 57999998643211 11 2248899999999999999999986432 1110 00 00 000 00111
Q ss_pred HHHHHHHHHHH------HH---HHHHHHhhcceEEEcCCCCHHHHHHHHHHHHH
Q 022042 244 KVKLRLKTHHH------NV---EAVLSLYEDVTVEVNGSVNKEDVFAQIDVALT 288 (303)
Q Consensus 244 ~~~~r~~~~~~------~~---~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~ 288 (303)
.+.++...|.. .. ..+...+...++.+++..+++++.++|.+.|.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~ 178 (183)
T PRK06217 125 EFLEWAASYDTAGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLA 178 (183)
T ss_pred HHHHHHHhccCCCCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHh
Confidence 22232222221 11 11222233467788999999999998888874
No 31
>PRK03839 putative kinase; Provisional
Probab=99.72 E-value=3.7e-16 Score=131.00 Aligned_cols=151 Identities=22% Similarity=0.282 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~ 164 (303)
|+|+|+|+|||||||+++.|++++|++++++|+++++. ..+..... .+ +.....+...+.+... +.
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~-----~~~~~~~~---~~-----~~~~~~l~~~~~~~~~-~~ 66 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK-----GIGEEKDD---EM-----EIDFDKLAYFIEEEFK-EK 66 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc-----CCcccCCh---hh-----hcCHHHHHHHHHHhcc-CC
Confidence 37999999999999999999999999999999988652 11111000 00 1112233333332222 46
Q ss_pred cEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHH
Q 022042 165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEK 244 (303)
Q Consensus 165 ~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~ 244 (303)
++|+||+... + ..++.+|||+++++++.+|+..|.... . +..+.
T Consensus 67 ~vIidG~~~~------l----~~~~~vi~L~~~~~~~~~Rl~~R~~~~-------------------~-------~~~~~ 110 (180)
T PRK03839 67 NVVLDGHLSH------L----LPVDYVIVLRAHPKIIKERLKERGYSK-------------------K-------KILEN 110 (180)
T ss_pred CEEEEecccc------c----cCCCEEEEEECCHHHHHHHHHHcCCCH-------------------H-------HHHHH
Confidence 6999997432 1 248899999999999999998874210 0 00011
Q ss_pred HHHHHHHHHHHHHHHHHHh--hcceEEEcCC-CCHHHHHHHHHHHHHHH
Q 022042 245 VKLRLKTHHHNVEAVLSLY--EDVTVEVNGS-VNKEDVFAQIDVALTNL 290 (303)
Q Consensus 245 ~~~r~~~~~~~~~~~~~~~--~~~~~~Id~~-~s~eev~~~I~~~l~~~ 290 (303)
...++... .+.+.| ...++.||++ .++++++++|.+.+...
T Consensus 111 ~~~~~~~~-----~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~~~ 154 (180)
T PRK03839 111 VEAELVDV-----CLCEALEEKEKVIEVDTTGKTPEEVVEEILELIKSG 154 (180)
T ss_pred HHHHHHHH-----HHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHhcC
Confidence 11111110 111222 2357889986 69999999999888654
No 32
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.71 E-value=7.3e-16 Score=125.97 Aligned_cols=166 Identities=23% Similarity=0.288 Sum_probs=104.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQ 162 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~~ 162 (303)
.+.|+++|++||||||+++.||+.+|+.++|+|.++.+. .+..+.+++.. |..-....-...+.+.+..
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~------~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~---- 71 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKR------TGMSIAEIFEEEGEEGFRRLETEVLKELLEE---- 71 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHH------HCcCHHHHHHHHhHHHHHHHHHHHHHHHhhc----
Confidence 357899999999999999999999999999999999885 44666666665 3222222222333333322
Q ss_pred CCcEEEcC--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042 163 ENGWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD 240 (303)
Q Consensus 163 ~~~~Vldg--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d 240 (303)
+..+|-.| ..........+...+ .+|||++|.+++++|+......| +.+..+.
T Consensus 72 ~~~ViaTGGG~v~~~enr~~l~~~g----~vv~L~~~~e~l~~Rl~~~~~RP---------------------ll~~~~~ 126 (172)
T COG0703 72 DNAVIATGGGAVLSEENRNLLKKRG----IVVYLDAPFETLYERLQRDRKRP---------------------LLQTEDP 126 (172)
T ss_pred CCeEEECCCccccCHHHHHHHHhCC----eEEEEeCCHHHHHHHhccccCCC---------------------cccCCCh
Confidence 23455554 224445555566554 89999999999999998443211 2221121
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHH
Q 022042 241 TEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLL 291 (303)
Q Consensus 241 ~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l 291 (303)
.+.++..++...+++.... .++++.+...++++++|.+.+...+
T Consensus 127 -----~~~l~~L~~~R~~~Y~e~a--~~~~~~~~~~~~v~~~i~~~l~~~~ 170 (172)
T COG0703 127 -----REELEELLEERQPLYREVA--DFIIDTDDRSEEVVEEILEALEGSL 170 (172)
T ss_pred -----HHHHHHHHHHHHHHHHHhC--cEEecCCCCcHHHHHHHHHHHHHhc
Confidence 2223333444444444433 3556666555899998888886543
No 33
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.71 E-value=4.9e-16 Score=132.38 Aligned_cols=167 Identities=23% Similarity=0.358 Sum_probs=111.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChH-----------------
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE----------------- 146 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~----------------- 146 (303)
|++|+|+|++||||||+++.|++ +|+++++.|++.++.+..+.+....+.+.+..+...++.
T Consensus 1 m~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~ 79 (200)
T PRK14734 1 MLRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQ 79 (200)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHH
Confidence 35899999999999999999987 899999999999999888877777777666554332211
Q ss_pred ------HHHHHH----HHHHcCCCCCC-CcEEEcCCCCCHHHHHHHHHhC--CCCcEEEEEEcCHHHHHHHHhcCCCCCC
Q 022042 147 ------IVVTMV----KERLSQPDSQE-NGWLLDGYPRSLSQATALKKYG--FQPDLFILLEVPEDTLVERVVGRRLDPV 213 (303)
Q Consensus 147 ------~~~~~l----~~~l~~~~~~~-~~~Vldg~p~~~~~~~~l~~~~--~~pd~vI~L~~~~e~~~~Rl~~R~~~~~ 213 (303)
++...+ ...+......+ ..++++ .|. +.+.+ ..+|.+||+++|.+++++|+.+|+
T Consensus 80 ~~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e-~pl-------L~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~---- 147 (200)
T PRK14734 80 TALLNAITHPRIAEETARRFNEARAQGAKVAVYD-MPL-------LVEKGLDRKMDLVVVVDVDVEERVRRLVEKR---- 147 (200)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEE-eec-------eeEcCccccCCeEEEEECCHHHHHHHHHHcC----
Confidence 011111 11111111112 223333 221 11111 257999999999999999999884
Q ss_pred CCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042 214 TGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE 292 (303)
Q Consensus 214 ~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~ 292 (303)
+-+.+.+..|+..+...... .....++|+++++++++.+++...++++++
T Consensus 148 -------------------------g~s~e~~~~ri~~Q~~~~~k----~~~ad~vI~N~g~~e~l~~~v~~~~~~~~~ 197 (200)
T PRK14734 148 -------------------------GLDEDDARRRIAAQIPDDVR----LKAADIVVDNNGTREQLLAQVDGLIAEILS 197 (200)
T ss_pred -------------------------CCCHHHHHHHHHhcCCHHHH----HHhCCEEEECcCCHHHHHHHHHHHHHHHHh
Confidence 12356667777666544222 122346789999999999999999887764
No 34
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.70 E-value=6.9e-16 Score=130.97 Aligned_cols=163 Identities=21% Similarity=0.234 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCC------cCh-------------
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL------VPD------------- 145 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~------~~~------------- 145 (303)
++|+|+|++||||||+++.|++.+|++++++|++.++.+..+.+....+.+.+..... +..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 5799999999999999999999899999999999999988888777777766643221 111
Q ss_pred -----HHHHHHH----HHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 022042 146 -----EIVVTMV----KERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGK 216 (303)
Q Consensus 146 -----~~~~~~l----~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~ 216 (303)
+++...+ ...+.... ....+|+|- |...+. .+. ..+|.+|+++||.+++.+|+.+|+
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~~-~~~~vv~e~-pll~E~--~~~---~~~D~ii~V~a~~e~r~~Rl~~R~------- 147 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQLK-SNPIVVLVI-PLLFEA--KLT---DLCSEIWVVDCSPEQQLQRLIKRD------- 147 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC-CCCEEEEEe-HHhcCc--chH---hCCCEEEEEECCHHHHHHHHHHcC-------
Confidence 0111222 22222221 123455553 211110 011 147999999999999999999884
Q ss_pred eecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHH
Q 022042 217 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVAL 287 (303)
Q Consensus 217 ~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l 287 (303)
..+.+.+.+|+..+..... .-...-++|+++++++++.+++.+++
T Consensus 148 ----------------------g~s~e~~~~ri~~Q~~~~~----k~~~aD~vI~N~g~~e~l~~qv~~~l 192 (195)
T PRK14730 148 ----------------------GLTEEEAEARINAQWPLEE----KVKLADVVLDNSGDLEKLYQQVDQLL 192 (195)
T ss_pred ----------------------CCCHHHHHHHHHhCCCHHH----HHhhCCEEEECCCCHHHHHHHHHHHH
Confidence 1224555666654332111 11112357899999999999998775
No 35
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.69 E-value=4.4e-15 Score=118.64 Aligned_cols=166 Identities=25% Similarity=0.317 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcC--hHHHHHHHHHHHcCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP--DEIVVTMVKERLSQPDSQ 162 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~--~~~~~~~l~~~l~~~~~~ 162 (303)
|+|.|.|+|||||||+|+.||++||+.+++.+.++|+..+. .|..+.++..-.+.-| |..+.....+...
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e---~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~----- 72 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARE---RGMSLEEFSRYAEEDPEIDKEIDRRQKELAK----- 72 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHH---cCCCHHHHHHHHhcCchhhHHHHHHHHHHHH-----
Confidence 57999999999999999999999999999999999987654 2333333222221111 2222222222222
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcH
Q 022042 163 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTE 242 (303)
Q Consensus 163 ~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~ 242 (303)
.+.+|++|.-. -++.. ...|+.|||.+|.+++.+|+.+|.. . +..
T Consensus 73 ~~nvVlegrLA-----~Wi~k--~~adlkI~L~Apl~vRa~Ria~REg-----i-----------------------~~~ 117 (179)
T COG1102 73 EGNVVLEGRLA-----GWIVR--EYADLKIWLKAPLEVRAERIAKREG-----I-----------------------DVD 117 (179)
T ss_pred cCCeEEhhhhH-----HHHhc--cccceEEEEeCcHHHHHHHHHHhcC-----C-----------------------CHH
Confidence 46789998421 11221 3589999999999999999999851 1 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh----c---ceEEEcC-CCCHHHHHHHHHHHHHHHHHh
Q 022042 243 EKVKLRLKTHHHNVEAVLSLYE----D---VTVEVNG-SVNKEDVFAQIDVALTNLLEQ 293 (303)
Q Consensus 243 e~~~~r~~~~~~~~~~~~~~~~----~---~~~~Id~-~~s~eev~~~I~~~l~~~l~~ 293 (303)
+...+-...-..+.+.+.+.|+ + .-++||. ..++++|+..|...+..+..+
T Consensus 118 ~a~~~~~~RE~se~kRY~~~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid~~~~~ 176 (179)
T COG1102 118 EALAETVEREESEKKRYKKIYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDALSIK 176 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccceeeEEEEecccCCHHHHHHHHHHHHHhhccc
Confidence 2221111111222222333332 1 2345665 468899999888888766543
No 36
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.68 E-value=1.4e-15 Score=128.86 Aligned_cols=169 Identities=24% Similarity=0.319 Sum_probs=111.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcCh------------------
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD------------------ 145 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~------------------ 145 (303)
|++|+|+|.+||||||+|+.+++ +|++++++|+++++....+.+....+.+.+.....-.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 67999999999999999999998 99999999999999888776655555554432221001
Q ss_pred -----HHHHHHHHHHHc-CCCCCCCcEEEcCCCCCHHHHHHHHHhCC--CCcEEEEEEcCHHHHHHHHhcCCCCCCCCce
Q 022042 146 -----EIVVTMVKERLS-QPDSQENGWLLDGYPRSLSQATALKKYGF--QPDLFILLEVPEDTLVERVVGRRLDPVTGKI 217 (303)
Q Consensus 146 -----~~~~~~l~~~l~-~~~~~~~~~Vldg~p~~~~~~~~l~~~~~--~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~ 217 (303)
.+...++...+. ........+++-..| .|.+.+. .+|.+|+++||+++.++|+.+|.
T Consensus 81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~eip-------lL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~-------- 145 (201)
T COG0237 81 RLKLEKILHPLIRAEIKVVIDGARSPYVVLEIP-------LLFEAGGEKYFDKVIVVYAPPEIRLERLMKRD-------- 145 (201)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCceEEEch-------HHHhccccccCCEEEEEECCHHHHHHHHHhcC--------
Confidence 111222222210 000111223333333 2333321 27899999999999999999985
Q ss_pred ecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 022042 218 YHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQ 293 (303)
Q Consensus 218 ~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~ 293 (303)
..+.+....++..+....+. +.-.-++++++.+++...+++.+.+..++..
T Consensus 146 ---------------------~~~~e~~~~~~~~Q~~~~ek----~~~ad~vi~n~~~i~~l~~~i~~~~~~~~~~ 196 (201)
T COG0237 146 ---------------------GLDEEDAEARLASQRDLEEK----LALADVVIDNDGSIENLLEQIEKLLKELLGL 196 (201)
T ss_pred ---------------------CCCHHHHHHHHHhcCCHHHH----HhhcCChhhcCCCHHHHHHHHHHHHHHHHhh
Confidence 23455666666655544443 2222357899999999999999999888764
No 37
>PRK13949 shikimate kinase; Provisional
Probab=99.68 E-value=3.8e-15 Score=123.57 Aligned_cols=161 Identities=17% Similarity=0.234 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQE 163 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~~~ 163 (303)
+.|+|+|+|||||||+++.|++.+++.+++.|.++.+.. +..+.+++.. |.....+....++.+ +.. .
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~------~~~~~~~~~~~g~~~fr~~e~~~l~~-l~~----~ 70 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRF------HKTVGDIFAERGEAVFRELERNMLHE-VAE----F 70 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHH------CccHHHHHHHhCHHHHHHHHHHHHHH-HHh----C
Confidence 579999999999999999999999999999999887642 2233333332 322222222233333 221 2
Q ss_pred CcEEE-cC--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC-CCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042 164 NGWLL-DG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR-LDPVTGKIYHVKYSPPETDEIAARLTKRFD 239 (303)
Q Consensus 164 ~~~Vl-dg--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~-~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~ 239 (303)
.++|+ +| ++........+.+ .+++|||++|.+++++|+..+. ..| +.. +
T Consensus 71 ~~~vis~Ggg~~~~~~~~~~l~~----~~~vi~L~~~~~~~~~Ri~~~~~~RP---------------------~~~--~ 123 (169)
T PRK13949 71 EDVVISTGGGAPCFFDNMELMNA----SGTTVYLKVSPEVLFVRLRLAKQQRP---------------------LLK--G 123 (169)
T ss_pred CCEEEEcCCcccCCHHHHHHHHh----CCeEEEEECCHHHHHHHHhcCCCCCC---------------------CCC--C
Confidence 34555 54 5566666666764 3589999999999999997532 111 111 1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCC-CCHHHHHHHHHHH
Q 022042 240 DTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGS-VNKEDVFAQIDVA 286 (303)
Q Consensus 240 d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~-~s~eev~~~I~~~ 286 (303)
...+.+...+...++.+.++++.. -++||.+ .++++++++|.+.
T Consensus 124 ~~~~~~~~~i~~l~~~R~~~Y~~a---d~~id~~~~~~~e~~~~I~~~ 168 (169)
T PRK13949 124 KSDEELLDFIIEALEKRAPFYRQA---KIIFNADKLEDESQIEQLVQR 168 (169)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhC---CEEEECCCCCHHHHHHHHHHh
Confidence 112223334444455555554442 2556644 5888888888764
No 38
>PLN02924 thymidylate kinase
Probab=99.67 E-value=2.6e-15 Score=129.50 Aligned_cols=175 Identities=17% Similarity=0.205 Sum_probs=105.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHH-------HH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMV-------KE 154 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l-------~~ 154 (303)
+.+++|+|+|.+||||||+++.|++++....+.+ .++++ ...++..|..+++++..+..+.+....-++ ..
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~ 91 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRS 91 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999996443332 11111 122466777788777655433332211000 11
Q ss_pred HHcCCCCCCCcEEEcCCCC-----------CHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCC
Q 022042 155 RLSQPDSQENGWLLDGYPR-----------SLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYS 223 (303)
Q Consensus 155 ~l~~~~~~~~~~Vldg~p~-----------~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~ 223 (303)
.+......+..+|.|.|.. ..++...+......||++||||+|++++.+|...+.
T Consensus 92 ~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~-------------- 157 (220)
T PLN02924 92 LMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGG-------------- 157 (220)
T ss_pred HHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc--------------
Confidence 1222222366788887543 122333344445679999999999999999954221
Q ss_pred CCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042 224 PPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE 292 (303)
Q Consensus 224 ~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~ 292 (303)
++ . +..+. .+++...+ ..+.+ ..+.+||++.++++|.++|.+.|.+.+.
T Consensus 158 --------~~----~-E~~~~-~~rv~~~Y---~~la~---~~~~vIDa~~sieeV~~~I~~~I~~~l~ 206 (220)
T PLN02924 158 --------ER----Y-EKLEF-QKKVAKRF---QTLRD---SSWKIIDASQSIEEVEKKIREVVLDTVQ 206 (220)
T ss_pred --------cc----c-ccHHH-HHHHHHHH---HHHhh---cCEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 00 0 11222 22222222 22221 3467889999999999999999988765
No 39
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.67 E-value=1.2e-15 Score=130.91 Aligned_cols=171 Identities=16% Similarity=0.231 Sum_probs=106.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc--------CC-CcChH-------
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK--------GQ-LVPDE------- 146 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~--------g~-~~~~~------- 146 (303)
.+++|+|+|++||||||+++.|.+ +|+.+++.|.+.++....+......+...+.. |. .+...
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf 82 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF 82 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence 457899999999999999999986 89999999999888765544332233322211 10 01100
Q ss_pred -----------HHH----HHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCC
Q 022042 147 -----------IVV----TMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLD 211 (303)
Q Consensus 147 -----------~~~----~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~ 211 (303)
++. ..+...+......+..+|+-+.|.-.+. . + ...+|.+|++++|.+++.+|+.+|+
T Consensus 83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~-~-~---~~~~d~ii~V~a~~e~~~~Rl~~R~-- 155 (208)
T PRK14731 83 SDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFES-G-G---DAGLDFIVVVAADTELRLERAVQRG-- 155 (208)
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeec-C-c---hhcCCeEEEEECCHHHHHHHHHHcC--
Confidence 011 1112222221112223444333321110 0 1 1247999999999999999999985
Q ss_pred CCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHH
Q 022042 212 PVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLL 291 (303)
Q Consensus 212 ~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l 291 (303)
..+.+.+.+|++.+......+. . ..++|+++++++++.+++.+.+..++
T Consensus 156 ---------------------------~~s~e~~~~Ri~~q~~~~~~~~-~---ad~vI~N~g~~e~l~~~i~~~~~~~~ 204 (208)
T PRK14731 156 ---------------------------MGSREEIRRRIAAQWPQEKLIE-R---ADYVIYNNGTLDELKAQTEQLYQVLL 204 (208)
T ss_pred ---------------------------CCCHHHHHHHHHHcCChHHHHH-h---CCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 1236677777776655444432 1 24678899999999999999998876
Q ss_pred H
Q 022042 292 E 292 (303)
Q Consensus 292 ~ 292 (303)
.
T Consensus 205 ~ 205 (208)
T PRK14731 205 Q 205 (208)
T ss_pred H
Confidence 3
No 40
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.67 E-value=2.8e-15 Score=130.70 Aligned_cols=170 Identities=14% Similarity=0.146 Sum_probs=109.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCC-----CcChH------------
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ-----LVPDE------------ 146 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~-----~~~~~------------ 146 (303)
|++|+|+|.+||||||+++.|.+++|+++|++|.+.++.+..+.+....+.+.+.... .+...
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~ 80 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQA 80 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHH
Confidence 4689999999999999999999989999999999999988877666555655442211 11111
Q ss_pred ------HHHHHH----HHHHcC---------CCCCC-CcEEEcCCCCCHHHHHHHHHh--CCCCcEEEEEEcCHHHHHHH
Q 022042 147 ------IVVTMV----KERLSQ---------PDSQE-NGWLLDGYPRSLSQATALKKY--GFQPDLFILLEVPEDTLVER 204 (303)
Q Consensus 147 ------~~~~~l----~~~l~~---------~~~~~-~~~Vldg~p~~~~~~~~l~~~--~~~pd~vI~L~~~~e~~~~R 204 (303)
++...+ ...+.+ ....+ ..+|+|. |.- ++.. ...+|.+|++++|.+++.+|
T Consensus 81 ~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~ev-PLL------~E~~~~~~~~D~iv~V~a~~e~ri~R 153 (244)
T PTZ00451 81 RRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDA-PTL------FETKTFTYFVSASVVVSCSEERQIER 153 (244)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEe-chh------hccCchhhcCCeEEEEECCHHHHHHH
Confidence 111111 112211 00111 2466664 211 1111 12469999999999999999
Q ss_pred HhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCC--CCHHHHHHH
Q 022042 205 VVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGS--VNKEDVFAQ 282 (303)
Q Consensus 205 l~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~--~s~eev~~~ 282 (303)
+.+|+ ..+.+.+++|+..+...... -...-++|+|+ ++++++.++
T Consensus 154 L~~R~-----------------------------g~s~eea~~Ri~~Q~~~~ek----~~~aD~VI~N~~~g~~~~L~~~ 200 (244)
T PTZ00451 154 LRKRN-----------------------------GFSKEEALQRIGSQMPLEEK----RRLADYIIENDSADDLDELRGS 200 (244)
T ss_pred HHHcC-----------------------------CCCHHHHHHHHHhCCCHHHH----HHhCCEEEECCCCCCHHHHHHH
Confidence 99884 22356667777654332221 11123578888 999999999
Q ss_pred HHHHHHHHHHh
Q 022042 283 IDVALTNLLEQ 293 (303)
Q Consensus 283 I~~~l~~~l~~ 293 (303)
+.+.+..+.++
T Consensus 201 v~~~~~~~~~~ 211 (244)
T PTZ00451 201 VCDCVAWMSRQ 211 (244)
T ss_pred HHHHHHHHHhh
Confidence 99998776543
No 41
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.67 E-value=2.5e-15 Score=128.25 Aligned_cols=176 Identities=22% Similarity=0.306 Sum_probs=99.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCC---ceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcCh-HHHH-------H
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGL---VHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPD-EIVV-------T 150 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~---~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~-~~~~-------~ 150 (303)
++++|+|+|++||||||+++.|+++++. .++.. .. ..+...++.+++.+.. ...... .... .
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~-----~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 75 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFT-----RE-PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQ 75 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEe-----eC-CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999998732 22211 00 1123455555555542 111111 1111 1
Q ss_pred HHHHHHcCCCCCCCcEEEcCCCCC------------HHHHHHHHHh---CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 022042 151 MVKERLSQPDSQENGWLLDGYPRS------------LSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTG 215 (303)
Q Consensus 151 ~l~~~l~~~~~~~~~~Vldg~p~~------------~~~~~~l~~~---~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g 215 (303)
.+.+.+......+..+|+|.|... ..+...+... ...||++|||++|++++.+|+.+|+..
T Consensus 76 ~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~---- 151 (205)
T PRK00698 76 HLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGEL---- 151 (205)
T ss_pred HHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCc----
Confidence 111111111123567888854321 2222233322 257999999999999999999998510
Q ss_pred ceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHH
Q 022042 216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLL 291 (303)
Q Consensus 216 ~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l 291 (303)
++ .........+++. ..+..+.+.+...+++||++.+++++.++|.+.|.+++
T Consensus 152 ----------------~~----~~~~~~~~~~~~~---~~y~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~i~~~~ 204 (205)
T PRK00698 152 ----------------DR----IEQEGLDFFERVR---EGYLELAEKEPERIVVIDASQSLEEVHEDILAVIKAWL 204 (205)
T ss_pred ----------------ch----hhhhhHHHHHHHH---HHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 00 0000112222222 22333333444467889999999999999999998765
No 42
>PLN02422 dephospho-CoA kinase
Probab=99.67 E-value=2.2e-15 Score=130.18 Aligned_cols=167 Identities=20% Similarity=0.221 Sum_probs=107.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCC-----cCh--------------
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VPD-------------- 145 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~-----~~~-------------- 145 (303)
++|+|+|++||||||+++.|+ ++|++++++|++.++.+..+++....+.+.+..... +..
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 479999999999999999998 589999999999999988876655555555432211 111
Q ss_pred ----HHHHHHHHHHHc----CCC-CCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 022042 146 ----EIVVTMVKERLS----QPD-SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGK 216 (303)
Q Consensus 146 ----~~~~~~l~~~l~----~~~-~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~ 216 (303)
+++...+...+. +.. .....+|+|- |.-.+ . .....+|.+|+++||.+++.+|+.+|+
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~ei-pLL~E-~----~~~~~~D~vI~V~a~~e~ri~RL~~R~------- 147 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDI-PLLFE-T----KMDKWTKPVVVVWVDPETQLERLMARD------- 147 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEe-hhhhh-c----chhhhCCEEEEEECCHHHHHHHHHHcC-------
Confidence 112222222221 111 1123455553 32111 0 011247999999999999999999985
Q ss_pred eecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHH
Q 022042 217 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLL 291 (303)
Q Consensus 217 ~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l 291 (303)
..+.+.+.+|++.+...... -....++|+|+++++++.+++.+.+++++
T Consensus 148 ----------------------g~s~eea~~Ri~~Q~~~eek----~~~AD~VI~N~gs~e~L~~qv~~ll~~l~ 196 (232)
T PLN02422 148 ----------------------GLSEEQARNRINAQMPLDWK----RSKADIVIDNSGSLEDLKQQFQKVLEKIR 196 (232)
T ss_pred ----------------------CCCHHHHHHHHHHcCChhHH----HhhCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence 12355666666544332111 11123678999999999999999887764
No 43
>PRK08233 hypothetical protein; Provisional
Probab=99.65 E-value=1.8e-15 Score=126.71 Aligned_cols=169 Identities=17% Similarity=0.231 Sum_probs=94.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCC-ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGL-VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~-~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~ 161 (303)
++++|+|+|++||||||+|+.|+++++. ..+..|..... .....+..+...+... +......+...+.....
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 74 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFD------NCPEDICKWIDKGANY-SEWVLTPLIKDIQELIA 74 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcc------cCchhhhhhhhccCCh-hhhhhHHHHHHHHHHHc
Confidence 4579999999999999999999999963 33333322110 0111223333333322 22222333333322211
Q ss_pred C-CCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042 162 Q-ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD 240 (303)
Q Consensus 162 ~-~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d 240 (303)
. +..+|+.++|...... ..+..+|++|||++|.+++++|+.+|... +.
T Consensus 75 ~~~~~~vivd~~~~~~~~----~~~~~~d~~i~l~~~~~~~~~R~~~R~~~---------------------------~~ 123 (182)
T PRK08233 75 KSNVDYIIVDYPFAYLNS----EMRQFIDVTIFIDTPLDIAMARRILRDFK---------------------------ED 123 (182)
T ss_pred CCCceEEEEeeehhhccH----HHHHHcCEEEEEcCCHHHHHHHHHHHHhh---------------------------hc
Confidence 1 1244454444332211 12224789999999999999998877421 00
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH----hh-cceEEEcCCCCHHHHHHHHHHHHHH
Q 022042 241 TEEKVKLRLKTHHHNVEAVLSL----YE-DVTVEVNGSVNKEDVFAQIDVALTN 289 (303)
Q Consensus 241 ~~e~~~~r~~~~~~~~~~~~~~----~~-~~~~~Id~~~s~eev~~~I~~~l~~ 289 (303)
..+.+.+++..|.....+.+.. +. ...++||++.++++++++|.+.+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~~ 177 (182)
T PRK08233 124 TGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEEIINQIEEELYR 177 (182)
T ss_pred cccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHHh
Confidence 1122334455554433333222 11 2457799999999999999998764
No 44
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.64 E-value=1.3e-14 Score=123.23 Aligned_cols=168 Identities=14% Similarity=0.176 Sum_probs=105.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCC----CcCh--------------
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ----LVPD-------------- 145 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~----~~~~-------------- 145 (303)
|++|+|+|++||||||+++.|++++|+.+++.|.+.++.+.. ......+.+.+.... .+..
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~ 84 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAK 84 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHH
Confidence 578999999999999999999998999999999999888654 222233332222111 1111
Q ss_pred ----HHHHHHH----HHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCce
Q 022042 146 ----EIVVTMV----KERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKI 217 (303)
Q Consensus 146 ----~~~~~~l----~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~ 217 (303)
.++...+ ...+... ....+|+|- |.-.+.- +. ....+|.+|++.||.++..+|+.+|+
T Consensus 85 ~~Le~i~HP~V~~~~~~~~~~~--~~~~vv~ei-pLL~E~~--~~-~~~~~D~vi~V~a~~e~ri~Rl~~Rd-------- 150 (204)
T PRK14733 85 KWLEDYLHPVINKEIKKQVKES--DTVMTIVDI-PLLGPYN--FR-HYDYLKKVIVIKADLETRIRRLMERD-------- 150 (204)
T ss_pred HHHHhhhhHHHHHHHHHHHHhc--CCCeEEEEe-chhhhcc--Cc-hhhhCCEEEEEECCHHHHHHHHHHcC--------
Confidence 1122222 2222221 123455654 2111100 00 01247899999999999999999885
Q ss_pred ecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCC-CHHHHHHHHHHHHHHHH
Q 022042 218 YHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSV-NKEDVFAQIDVALTNLL 291 (303)
Q Consensus 218 ~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~-s~eev~~~I~~~l~~~l 291 (303)
..+++.+.+|+..+....+.... .-++|++++ +++++.+++.+.++++.
T Consensus 151 ---------------------~~s~~~a~~ri~~Q~~~eek~~~----aD~VI~N~g~~~~~l~~~~~~~~~~~~ 200 (204)
T PRK14733 151 ---------------------GKNRQQAVAFINLQISDKEREKI----ADFVIDNTELTDQELESKLITTINEIT 200 (204)
T ss_pred ---------------------CCCHHHHHHHHHhCCCHHHHHHh----CCEEEECcCCCHHHHHHHHHHHHHHHH
Confidence 22356667777665543332221 236789999 99999999999988874
No 45
>PRK08118 topology modulation protein; Reviewed
Probab=99.64 E-value=2.7e-15 Score=124.26 Aligned_cols=100 Identities=28% Similarity=0.458 Sum_probs=74.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE 163 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~ 163 (303)
|+.|+|+|++||||||+|+.|++++|++++++|+++.. ..+..++++.+..++.+.+. .
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~----------------~~w~~~~~~~~~~~~~~~~~-----~ 59 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK----------------PNWEGVPKEEQITVQNELVK-----E 59 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc----------------cCCcCCCHHHHHHHHHHHhc-----C
Confidence 46899999999999999999999999999999988753 11233445544455544443 3
Q ss_pred CcEEEcC-CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCC
Q 022042 164 NGWLLDG-YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRL 210 (303)
Q Consensus 164 ~~~Vldg-~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~ 210 (303)
.+||+|| |+.... ..+. .+|.+|||++|.+++..|+.+|..
T Consensus 60 ~~wVidG~~~~~~~--~~l~----~~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 60 DEWIIDGNYGGTMD--IRLN----AADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred CCEEEeCCcchHHH--HHHH----hCCEEEEEeCCHHHHHHHHHHHHH
Confidence 5799999 544432 1233 489999999999999999998853
No 46
>PRK04182 cytidylate kinase; Provisional
Probab=99.64 E-value=2.3e-14 Score=119.66 Aligned_cols=113 Identities=28% Similarity=0.414 Sum_probs=70.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~ 164 (303)
|+|+|+|.+||||||+++.|++++|+++++.+++++............+.+. +...+. +...+...+......++
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~ 75 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKY---AEEDPE--IDKEIDRRQLEIAEKED 75 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHH---hhcCch--HHHHHHHHHHHHHhcCC
Confidence 4899999999999999999999999999999998887654322111122221 211111 11111111111111246
Q ss_pred cEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 165 ~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
++|++|.-... +.. ..++++|||++|.+++.+|+..|.
T Consensus 76 ~~Vi~g~~~~~-----~~~--~~~~~~V~l~a~~e~~~~Rl~~r~ 113 (180)
T PRK04182 76 NVVLEGRLAGW-----MAK--DYADLKIWLKAPLEVRAERIAERE 113 (180)
T ss_pred CEEEEEeecce-----Eec--CCCCEEEEEECCHHHHHHHHHhcc
Confidence 78888731111 111 127899999999999999999874
No 47
>PRK13975 thymidylate kinase; Provisional
Probab=99.63 E-value=6.8e-14 Score=118.73 Aligned_cols=170 Identities=19% Similarity=0.239 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHH-------HHHHc
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMV-------KERLS 157 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l-------~~~l~ 157 (303)
++|+|+|++||||||+++.|+++++..+... ..++..+..+++++..+ ...+.....++ ...+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~--------~~~~~~g~~ir~~~~~~-~~~~~~~~~~f~~~r~~~~~~i~ 73 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAFWTCE--------PTDGKIGKLIREILSGS-KCDKETLALLFAADRVEHVKEIE 73 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeeEC--------CCCChHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998532110 11223344444444333 11111110000 00111
Q ss_pred CCCCCCCcEEEcCCCCC-----------HHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCC
Q 022042 158 QPDSQENGWLLDGYPRS-----------LSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPE 226 (303)
Q Consensus 158 ~~~~~~~~~Vldg~p~~-----------~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~ 226 (303)
.... ...+|+|.|... ......+......||++|||+++++++.+|+..|..+
T Consensus 74 ~~~~-~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~--------------- 137 (196)
T PRK13975 74 EDLK-KRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKE--------------- 137 (196)
T ss_pred HHHc-CCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCcc---------------
Confidence 1111 256888875321 1122223333457999999999999999999987410
Q ss_pred chHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHh-hcceEEEcCC-CCHHHHHHHHHHHHHHHH
Q 022042 227 TDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY-EDVTVEVNGS-VNKEDVFAQIDVALTNLL 291 (303)
Q Consensus 227 ~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~-~~~~~~Id~~-~s~eev~~~I~~~l~~~l 291 (303)
..+..+..++..+.|.+... ...++ ...+++||++ .++++++++|.+.|.+.+
T Consensus 138 -----------~~~~~~~~~~~~~~y~~~~~-~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~~ 192 (196)
T PRK13975 138 -----------IFEKKEFLKKVQEKYLELAN-NEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDKI 192 (196)
T ss_pred -----------ccchHHHHHHHHHHHHHHHh-hcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 01112333333334433322 11112 1246789985 899999999998886543
No 48
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.63 E-value=2.3e-14 Score=121.42 Aligned_cols=171 Identities=22% Similarity=0.281 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCceeehHHHHHHHHHcCCcchHHHHHHHHcCC---CcChHH-------HHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ---LVPDEI-------VVTM 151 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~---~~~~~~-------~~~~ 151 (303)
|+|+|+|++||||||+++.|++++ |+.++.... ...+..+..+++++.... ..+... ....
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 74 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH 74 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence 579999999999999999999998 554443311 112223444444444321 111100 0011
Q ss_pred HHHHHcCCCCCCCcEEEcCCCCC------------HHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 022042 152 VKERLSQPDSQENGWLLDGYPRS------------LSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGK 216 (303)
Q Consensus 152 l~~~l~~~~~~~~~~Vldg~p~~------------~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~ 216 (303)
+.+.+......+..+|+|.++.. ..+...+.. ....|+++|||+++++++.+|+.+|.....
T Consensus 75 ~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~--- 151 (200)
T cd01672 75 VEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDR--- 151 (200)
T ss_pred HHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcch---
Confidence 11112111123567888854321 122222222 234799999999999999999998852100
Q ss_pred eecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHH
Q 022042 217 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALT 288 (303)
Q Consensus 217 ~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~ 288 (303)
.... .....+++ ...+..+...+...+++||++.+++++.++|.+.|.
T Consensus 152 --------------------~~~~-~~~~~~~~---~~~y~~~~~~~~~~~~~id~~~~~e~i~~~i~~~i~ 199 (200)
T cd01672 152 --------------------DEQE-GLEFHERV---REGYLELAAQEPERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred --------------------hhhh-hHHHHHHH---HHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHh
Confidence 0001 11122222 222333333433457889999999999999988774
No 49
>PRK13946 shikimate kinase; Provisional
Probab=99.63 E-value=3e-14 Score=119.90 Aligned_cols=171 Identities=19% Similarity=0.166 Sum_probs=101.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDS 161 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~ 161 (303)
.++.|+|+|++||||||+++.|++++|+++++.|.++.... +.... +++.. |.....+.....+...+..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~----e~~~~~ge~~~~~~e~~~l~~l~~~--- 79 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIA----EIFAAYGEPEFRDLERRVIARLLKG--- 79 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHH----HHHHHHCHHHHHHHHHHHHHHHHhc---
Confidence 34589999999999999999999999999999998776542 22222 22221 2111111122223322221
Q ss_pred CCCcEEEcCCC--CCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042 162 QENGWLLDGYP--RSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD 239 (303)
Q Consensus 162 ~~~~~Vldg~p--~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~ 239 (303)
+..+|.+|.. ........+.. ..++|||++|.+++.+|+..|...+. .. ..
T Consensus 80 -~~~Vi~~ggg~~~~~~~r~~l~~----~~~~v~L~a~~e~~~~Rl~~r~~rp~---------------------~~-~~ 132 (184)
T PRK13946 80 -GPLVLATGGGAFMNEETRAAIAE----KGISVWLKADLDVLWERVSRRDTRPL---------------------LR-TA 132 (184)
T ss_pred -CCeEEECCCCCcCCHHHHHHHHc----CCEEEEEECCHHHHHHHhcCCCCCCc---------------------CC-CC
Confidence 3445555432 33344444443 34789999999999999988752211 00 01
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHhhh
Q 022042 240 DTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRK 295 (303)
Q Consensus 240 d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~~~ 295 (303)
+..+. ++...+...+++..| .+.....+.+++++++.|.+.+..++.+..
T Consensus 133 ~~~~~----i~~~~~~R~~~y~~~--dl~i~~~~~~~~~~~~~i~~~i~~~~~~~~ 182 (184)
T PRK13946 133 DPKET----LARLMEERYPVYAEA--DLTVASRDVPKEVMADEVIEALAAYLEKEE 182 (184)
T ss_pred ChHHH----HHHHHHHHHHHHHhC--CEEEECCCCCHHHHHHHHHHHHHHhhcccc
Confidence 11222 233333333333333 233345678999999999999998876643
No 50
>PRK13947 shikimate kinase; Provisional
Probab=99.62 E-value=4.4e-14 Score=117.29 Aligned_cols=110 Identities=18% Similarity=0.261 Sum_probs=69.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQE 163 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~~~ 163 (303)
+.|+|+|+|||||||+++.|++.+|+.+++.|.+++.. .|..+.+++.. +.....+.....+ ..+.. .
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~------~g~~~~~~~~~~ge~~~~~~e~~~~-~~l~~----~ 70 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKM------TGMTVAEIFEKDGEVRFRSEEKLLV-KKLAR----L 70 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhh------cCCcHHHHHHHhChHHHHHHHHHHH-HHHhh----c
Confidence 46999999999999999999999999999999987664 22233333332 2111111111222 22221 1
Q ss_pred CcEEE-cC--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 164 NGWLL-DG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 164 ~~~Vl-dg--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
...|+ .| ++........+.+. +.+|||+++++++.+|+..|.
T Consensus 71 ~~~vi~~g~g~vl~~~~~~~l~~~----~~vv~L~~~~~~l~~Rl~~r~ 115 (171)
T PRK13947 71 KNLVIATGGGVVLNPENVVQLRKN----GVVICLKARPEVILRRVGKKK 115 (171)
T ss_pred CCeEEECCCCCcCCHHHHHHHHhC----CEEEEEECCHHHHHHHhcCCC
Confidence 22333 22 33334445555543 479999999999999998764
No 51
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.62 E-value=3.8e-14 Score=117.75 Aligned_cols=164 Identities=15% Similarity=0.180 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~ 164 (303)
..|+|+|++||||||+++.|++++|+++++.|.++.... +..+.+++... ..+.+...-...+... ....
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~------g~~~~~~~~~~---g~~~~~~~e~~~~~~~-~~~~ 72 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTS------NMTVAEIVERE---GWAGFRARESAALEAV-TAPS 72 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh------CCCHHHHHHHH---CHHHHHHHHHHHHHHh-cCCC
Confidence 468899999999999999999999999999999887642 22222222211 1122222212222111 1123
Q ss_pred cEEEcC--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccC-C-CC
Q 022042 165 GWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKR-F-DD 240 (303)
Q Consensus 165 ~~Vldg--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r-~-~d 240 (303)
.+|..| +.........+.. .+++|||++|++++.+|+..|..+. ++ |. +... . ++
T Consensus 73 ~vi~~ggg~vl~~~~~~~l~~----~~~~v~l~~~~~~~~~Rl~~r~~~~--~r--------p~-------~~~~~~~~~ 131 (171)
T PRK03731 73 TVIATGGGIILTEENRHFMRN----NGIVIYLCAPVSVLANRLEANPEED--QR--------PT-------LTGKPISEE 131 (171)
T ss_pred eEEECCCCccCCHHHHHHHHh----CCEEEEEECCHHHHHHHHccccccc--cC--------Cc-------CCCCChHHH
Confidence 334344 3333334444443 4589999999999999998763210 00 00 0000 0 01
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHH
Q 022042 241 TEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTN 289 (303)
Q Consensus 241 ~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~ 289 (303)
..+.+++|...|.. + ..++||++.++++++++|.+.+.+
T Consensus 132 ~~~~~~~r~~~y~~--------~--a~~~Id~~~~~e~v~~~i~~~l~~ 170 (171)
T PRK03731 132 VAEVLAEREALYRE--------V--AHHIIDATQPPSQVVSEILSALAQ 170 (171)
T ss_pred HHHHHHHHHHHHHH--------h--CCEEEcCCCCHHHHHHHHHHHHhc
Confidence 12222222222221 1 237889999999999999888753
No 52
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.61 E-value=5.6e-15 Score=124.76 Aligned_cols=160 Identities=24% Similarity=0.292 Sum_probs=101.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcC-----CCcCh---------------
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKG-----QLVPD--------------- 145 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g-----~~~~~--------------- 145 (303)
+|+|+|.+||||||+++.|++..|++++++|++.++.+..+.+....+.+.+... ..+..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 4889999999999999999998779999999999998888776655555444321 11110
Q ss_pred ---H----HHHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCcee
Q 022042 146 ---E----IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIY 218 (303)
Q Consensus 146 ---~----~~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~ 218 (303)
. .+...+...+.+....+..+|++. |..... .....+|.+|+++++.+++.+|+.+|.
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~-pll~e~-----~~~~~~D~vv~V~~~~~~~~~Rl~~R~--------- 145 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDV-PLLFEN-----KLRSLCDRVIVVDVSPQLQLERLMQRD--------- 145 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEc-hHhhhC-----CcHHhCCEEEEEECCHHHHHHHHHHcC---------
Confidence 0 111222333333222123455543 322110 111247899999999999999999885
Q ss_pred cccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHH
Q 022042 219 HVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQID 284 (303)
Q Consensus 219 ~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~ 284 (303)
+.+.+.+.+|+..+...... -...-++|+++++++++.+++.
T Consensus 146 --------------------~~s~~~~~~r~~~q~~~~~~----~~~ad~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 146 --------------------NLTEEEVQKRLASQMDIEER----LARADDVIDNSATLADLVKQLE 187 (188)
T ss_pred --------------------CCCHHHHHHHHHhcCCHHHH----HHhCCEEEECCCCHHHHHHHHh
Confidence 12355666666665432211 1112367889999999988875
No 53
>PRK04040 adenylate kinase; Provisional
Probab=99.61 E-value=6.6e-14 Score=118.06 Aligned_cols=173 Identities=17% Similarity=0.170 Sum_probs=101.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh--CCceeehHHHHHHHHHcCCc--chHHHHHHHHcCCCcChHHHHHHHHHHHcCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY--GLVHIAAGDLLRAEIAAGSE--NGKRAKEHMEKGQLVPDEIVVTMVKERLSQP 159 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l--g~~~i~~d~l~~~~~~~~~~--~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~ 159 (303)
|++|+|+|+|||||||+++.|++++ ++.+++.++++++......- ....+++ ........+.......+.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~----l~~~~~~~~~~~a~~~i~~~ 77 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRK----LPPEEQKELQREAAERIAEM 77 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhh----CChhhhHHHHHHHHHHHHHh
Confidence 6799999999999999999999999 89999999998876544221 1122211 11111112222333333332
Q ss_pred CCCCCcEEEcCCCCCH--------HHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH
Q 022042 160 DSQENGWLLDGYPRSL--------SQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA 231 (303)
Q Consensus 160 ~~~~~~~Vldg~p~~~--------~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~ 231 (303)
. .++.+|+|++.... .....+. ...||.+|+|+++++++++|..+..
T Consensus 78 ~-~~~~~~~~~h~~i~~~~g~~~~~~~~~~~--~l~pd~ii~l~a~p~~i~~Rrl~d~---------------------- 132 (188)
T PRK04040 78 A-GEGPVIVDTHATIKTPAGYLPGLPEWVLE--ELNPDVIVLIEADPDEILMRRLRDE---------------------- 132 (188)
T ss_pred h-cCCCEEEeeeeeeccCCCCcCCCCHHHHh--hcCCCEEEEEeCCHHHHHHHHhccc----------------------
Confidence 2 24558899842100 0111122 2369999999999999988887420
Q ss_pred hhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEc-CCCCHHHHHHHHHHHH
Q 022042 232 ARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVN-GSVNKEDVFAQIDVAL 287 (303)
Q Consensus 232 ~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id-~~~s~eev~~~I~~~l 287 (303)
...|..+..+.++.+++........+....+..+++|. .++.+++.+++|.++|
T Consensus 133 --~R~R~~es~e~I~~~~~~a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 133 --TRRRDVETEEDIEEHQEMNRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred --ccCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 00133455666666666544433322222232344443 3344888888887765
No 54
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.61 E-value=3.5e-14 Score=115.01 Aligned_cols=155 Identities=23% Similarity=0.317 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~ 164 (303)
|+|+|+|.||+||||+|+.|+ ++|+.+++..+++.+.- ......+ ......+..+.+...+...+ ...
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~-----~~~~~de-~r~s~~vD~d~~~~~le~~~-----~~~ 68 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENG-----LYTEYDE-LRKSVIVDVDKLRKRLEELL-----REG 68 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcC-----CeeccCC-ccceEEeeHHHHHHHHHHHh-----ccC
Confidence 589999999999999999999 89999999998876531 0000000 00011112222222223222 135
Q ss_pred cEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHH
Q 022042 165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEK 244 (303)
Q Consensus 165 ~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~ 244 (303)
..|+|++ +......+|+||.|.++++++.+||.+|++++. .+.+.+
T Consensus 69 ~~Ivd~H---------~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~e---------------KI~ENv---------- 114 (180)
T COG1936 69 SGIVDSH---------LSHLLPDCDLVVVLRADPEVLYERLKGRGYSEE---------------KILENV---------- 114 (180)
T ss_pred CeEeech---------hhhcCCCCCEEEEEcCCHHHHHHHHHHcCCCHH---------------HHHHHH----------
Confidence 6888985 232222479999999999999999999975321 111100
Q ss_pred HHHHHHHHHHHHHHHHHHhhcceEEEc-CCCCHHHHHHHHHHHHHH
Q 022042 245 VKLRLKTHHHNVEAVLSLYEDVTVEVN-GSVNKEDVFAQIDVALTN 289 (303)
Q Consensus 245 ~~~r~~~~~~~~~~~~~~~~~~~~~Id-~~~s~eev~~~I~~~l~~ 289 (303)
-.+.+.. ......+.+ +.++.|| .+.+++++++.|.+++..
T Consensus 115 eAEi~~v---i~~EA~E~~-~~v~evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 115 EAEILDV---ILIEAVERF-EAVIEVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred HHHHHHH---HHHHHHHhc-CceEEEECCCCCHHHHHHHHHHHHcc
Confidence 0001111 111223334 4567777 468999999999999874
No 55
>PRK00625 shikimate kinase; Provisional
Probab=99.61 E-value=9.1e-14 Score=115.52 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~ 164 (303)
|.|+|+|+|||||||+++.|++++|++++++|+++++..... ....+.+++.... .+.+...-...+..... ..
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~G---e~~fr~~E~~~l~~l~~-~~ 74 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYG---EEGFCREEFLALTSLPV-IP 74 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHC---HHHHHHHHHHHHHHhcc-CC
Confidence 469999999999999999999999999999999998753221 1123444443321 12222221122222222 33
Q ss_pred cEEEcC--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 165 GWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 165 ~~Vldg--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
.+|.+| .+........+.. ...+|||++|.+++.+|+..|.
T Consensus 75 ~VIs~GGg~~~~~e~~~~l~~----~~~Vv~L~~~~e~l~~Rl~~R~ 117 (173)
T PRK00625 75 SIVALGGGTLMIEPSYAHIRN----RGLLVLLSLPIATIYQRLQKRG 117 (173)
T ss_pred eEEECCCCccCCHHHHHHHhc----CCEEEEEECCHHHHHHHHhcCC
Confidence 455454 2233333333432 3579999999999999999874
No 56
>PRK13948 shikimate kinase; Provisional
Probab=99.61 E-value=7.9e-14 Score=116.72 Aligned_cols=165 Identities=18% Similarity=0.140 Sum_probs=99.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDS 161 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~ 161 (303)
.+..|+|+|++||||||+++.|++++|+.++++|.++++.. |..+.+++.. |.....+.....+...+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~------g~si~~if~~~Ge~~fR~~E~~~l~~l~~~--- 79 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVT------GKSIPEIFRHLGEAYFRRCEAEVVRRLTRL--- 79 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH------hCCHHHHHHHhCHHHHHHHHHHHHHHHHhc---
Confidence 34689999999999999999999999999999999887753 3344444443 3222222222323332221
Q ss_pred CCCcEEEcC--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042 162 QENGWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD 239 (303)
Q Consensus 162 ~~~~~Vldg--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~ 239 (303)
...+|..| .+........+.+. ..+|||+++++++.+|+..+. .| +... .
T Consensus 80 -~~~VIa~GgG~v~~~~n~~~l~~~----g~vV~L~~~~e~l~~Rl~~~~-RP---------------------ll~~-~ 131 (182)
T PRK13948 80 -DYAVISLGGGTFMHEENRRKLLSR----GPVVVLWASPETIYERTRPGD-RP---------------------LLQV-E 131 (182)
T ss_pred -CCeEEECCCcEEcCHHHHHHHHcC----CeEEEEECCHHHHHHHhcCCC-CC---------------------CCCC-C
Confidence 23344443 33334444445543 479999999999999994321 11 1111 1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcC-CCCHHHHHHHHHHHHHHHH
Q 022042 240 DTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNG-SVNKEDVFAQIDVALTNLL 291 (303)
Q Consensus 240 d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~-~~s~eev~~~I~~~l~~~l 291 (303)
+. ..++...++...+++.. ..++|++ +.+++++.++|.+.+...+
T Consensus 132 ~~----~~~l~~l~~~R~~~Y~~---a~~~i~t~~~~~~ei~~~i~~~l~~~~ 177 (182)
T PRK13948 132 DP----LGRIRTLLNEREPVYRQ---ATIHVSTDGRRSEEVVEEIVEKLWAWA 177 (182)
T ss_pred Ch----HHHHHHHHHHHHHHHHh---CCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 11 12344444444444432 2345664 4799999999999987754
No 57
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.60 E-value=3.5e-14 Score=120.47 Aligned_cols=167 Identities=17% Similarity=0.192 Sum_probs=105.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCC-----cC----------------
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VP---------------- 144 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~-----~~---------------- 144 (303)
.|+|+|++||||||+++.|++ +|+.+++.|.+.++.+..+.+....+.+.+..... +.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 378999999999999999965 79999999999999887776655555554432211 11
Q ss_pred --hHHHHHHHHHH----HcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCcee
Q 022042 145 --DEIVVTMVKER----LSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIY 218 (303)
Q Consensus 145 --~~~~~~~l~~~----l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~ 218 (303)
..++...+... +.... .+..+|+|. |.-.+. . + ...+|.+||+++|.+++.+|+.+|+
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~~~-~~~~vi~e~-pLL~E~-~-~---~~~~D~vi~V~a~~e~r~~RL~~R~--------- 143 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQTTA-EGKLVIWEV-PLLFET-D-A---YTLCDATVTVDSDPEESILRTISRD--------- 143 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHHHh-cCCcEEEEe-eeeeEc-C-c---hhhCCEEEEEECCHHHHHHHHHHcC---------
Confidence 11122222222 21111 123455553 321110 0 1 1147999999999999999999884
Q ss_pred cccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 022042 219 HVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQ 293 (303)
Q Consensus 219 ~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~ 293 (303)
..+.+.+..|+....... +.-...-++|+++++++++..++.+.++++++.
T Consensus 144 --------------------g~s~e~a~~ri~~Q~~~~----~k~~~aD~vI~N~~~~~~l~~~v~~l~~~~~~~ 194 (196)
T PRK14732 144 --------------------GMKKEDVLARIASQLPIT----EKLKRADYIVRNDGNREGLKEECKILYSTLLKK 194 (196)
T ss_pred --------------------CCCHHHHHHHHHHcCCHH----HHHHhCCEEEECCCCHHHHHHHHHHHHHHHHHh
Confidence 123566666665543211 111112367889999999999999998877653
No 58
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.59 E-value=2e-14 Score=121.88 Aligned_cols=166 Identities=18% Similarity=0.227 Sum_probs=88.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC---ceeehHHHHHHHHHcCCcchHHHHHHHHcCC--CcChHH---H-----HH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGL---VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ--LVPDEI---V-----VT 150 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~---~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~--~~~~~~---~-----~~ 150 (303)
+++|+|+|++||||||+++.|+++++. .++-. ....+++.+..+++++..+. ...+.. + ..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~ 76 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT------REPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHE 76 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE------eCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999999843 22211 00112344445554433221 111110 0 01
Q ss_pred HHHHHHcCCCCCCCcEEEcCCC----------CC--HHHHHHHHHhCC--CCcEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 022042 151 MVKERLSQPDSQENGWLLDGYP----------RS--LSQATALKKYGF--QPDLFILLEVPEDTLVERVVGRRLDPVTGK 216 (303)
Q Consensus 151 ~l~~~l~~~~~~~~~~Vldg~p----------~~--~~~~~~l~~~~~--~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~ 216 (303)
.+.+.+......+..+|+|.|. +. ..+...+..... .||++|||+++++++.+|+..|...
T Consensus 77 ~~~~~i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~~----- 151 (195)
T TIGR00041 77 HLEDKIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGEL----- 151 (195)
T ss_pred HHHHHHHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCCc-----
Confidence 1122222222224567788532 11 122233333222 4999999999999999999988520
Q ss_pred eecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHH
Q 022042 217 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQI 283 (303)
Q Consensus 217 ~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I 283 (303)
++ ......+. ++...+.+..+.+. ...+++||+++++++|.++|
T Consensus 152 ---------------~~---~~~~~~~~----~~~~~~~y~~~~~~-~~~~~~id~~~~~e~v~~~i 195 (195)
T TIGR00041 152 ---------------DR---EEFEKLDF----FEKVRQRYLELADK-EKSIHVIDATNSVEEVEQDI 195 (195)
T ss_pred ---------------ch---HHHHHHHH----HHHHHHHHHHHHcC-CCcEEEEeCCCCHHHHHhhC
Confidence 00 00000111 11122222333332 33678899999999998764
No 59
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.59 E-value=2.1e-13 Score=112.99 Aligned_cols=113 Identities=25% Similarity=0.306 Sum_probs=71.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~ 164 (303)
|+|+|+|++||||||+|+.|++++|+++++.++++++...........+........ .+...+...+......+.
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~ 75 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENP-----EIDKKIDRRIHEIALKEK 75 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCc-----HHHHHHHHHHHHHHhcCC
Confidence 479999999999999999999999999999998887754432111111111111111 111222222222211246
Q ss_pred cEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 165 ~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
.+|++|.-... +. ...+|++|||++|.+++.+|+.+|.
T Consensus 76 ~~Vi~g~~~~~-----~~--~~~~d~~v~v~a~~~~r~~R~~~R~ 113 (171)
T TIGR02173 76 NVVLESRLAGW-----IV--REYADVKIWLKAPLEVRARRIAKRE 113 (171)
T ss_pred CEEEEecccce-----ee--cCCcCEEEEEECCHHHHHHHHHHcc
Confidence 78999842221 11 2247899999999999999999885
No 60
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.58 E-value=1.7e-13 Score=113.76 Aligned_cols=168 Identities=21% Similarity=0.274 Sum_probs=94.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPD 160 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~ 160 (303)
..++.|+|+|++||||||+|+.|++++|+.+++.|+++.... +.... +++.. |.....+.....+......
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~--g~~~~----~~~~~~g~~~~~~~~~~~~~~l~~~-- 73 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARA--GKSIP----EIFEEEGEAAFRELEEEVLAELLAR-- 73 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc--CCCHH----HHHHHHCHHHHHHHHHHHHHHHHhc--
Confidence 356799999999999999999999999999999999886532 22222 22211 2111111122222222221
Q ss_pred CCCCcEEEcCC--CCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCC
Q 022042 161 SQENGWLLDGY--PRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF 238 (303)
Q Consensus 161 ~~~~~~Vldg~--p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~ 238 (303)
...+|..|. .........+.. ...+|||++|.+.+.+|+.+|...+ +.. .
T Consensus 74 --~~~vi~~g~~~~~~~~~r~~l~~----~~~~v~l~~~~~~~~~R~~~~~~r~---------------------~~~-~ 125 (175)
T PRK00131 74 --HNLVISTGGGAVLREENRALLRE----RGTVVYLDASFEELLRRLRRDRNRP---------------------LLQ-T 125 (175)
T ss_pred --CCCEEEeCCCEeecHHHHHHHHh----CCEEEEEECCHHHHHHHhcCCCCCC---------------------cCC-C
Confidence 223444331 112222233322 3489999999999999998764210 000 1
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEc-CCCCHHHHHHHHHHHHHHHH
Q 022042 239 DDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVN-GSVNKEDVFAQIDVALTNLL 291 (303)
Q Consensus 239 ~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id-~~~s~eev~~~I~~~l~~~l 291 (303)
++..+. +..+.....+....+. .+.|| ++.+++++.+.|.+.|+.+.
T Consensus 126 ~~~~~~----~~~~~~~~~~~~~~~~--dl~idt~~~~~~e~~~~I~~~v~~~~ 173 (175)
T PRK00131 126 NDPKEK----LRDLYEERDPLYEEVA--DITVETDGRSPEEVVNEILEKLEAAW 173 (175)
T ss_pred CChHHH----HHHHHHHHHHHHHhhc--CeEEeCCCCCHHHHHHHHHHHHHhhc
Confidence 112222 2222222223222221 24455 56899999999999998654
No 61
>PRK13976 thymidylate kinase; Provisional
Probab=99.58 E-value=4.7e-14 Score=120.81 Aligned_cols=173 Identities=14% Similarity=0.090 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC-----ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHH-HH-------HH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGL-----VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEI-VV-------TM 151 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~-----~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~-~~-------~~ 151 (303)
++|+|+|..||||||+++.|++.|.- .++-. ....++.+++.+++++.....+.... .. ..
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~------~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~ 74 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT------REPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREH 74 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe------eCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999998732 11100 11234556666766665321122111 00 11
Q ss_pred HHHHHcCCCCCCCcEEEcCCCC------------CHHHHHHHHH--hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCce
Q 022042 152 VKERLSQPDSQENGWLLDGYPR------------SLSQATALKK--YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKI 217 (303)
Q Consensus 152 l~~~l~~~~~~~~~~Vldg~p~------------~~~~~~~l~~--~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~ 217 (303)
+.+.+......+..+|.|.|.. ...+...+.. ....||++|||++|+++..+|+.+++.+
T Consensus 75 ~~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~~e------ 148 (209)
T PRK13976 75 FVKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNGYE------ 148 (209)
T ss_pred HHHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccchh------
Confidence 1111221112356677776432 2223333332 1347999999999999999998543210
Q ss_pred ecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcC---CCC---HHHHHHHHHHHHHHHH
Q 022042 218 YHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNG---SVN---KEDVFAQIDVALTNLL 291 (303)
Q Consensus 218 ~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~---~~s---~eev~~~I~~~l~~~l 291 (303)
....+.++ ...+.+..+...+.+.++.||+ +++ +++|.++|.+.|.+.+
T Consensus 149 ---------------------~~~~~~l~----~v~~~Y~~l~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~ 203 (209)
T PRK13976 149 ---------------------FMDLEFYD----KVRKGFREIVIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVT 203 (209)
T ss_pred ---------------------cccHHHHH----HHHHHHHHHHHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHH
Confidence 01123322 2233333444455556777887 345 9999999999999888
Q ss_pred Hhh
Q 022042 292 EQR 294 (303)
Q Consensus 292 ~~~ 294 (303)
..+
T Consensus 204 ~~~ 206 (209)
T PRK13976 204 KDK 206 (209)
T ss_pred HHh
Confidence 543
No 62
>PLN02199 shikimate kinase
Probab=99.58 E-value=3.7e-13 Score=119.16 Aligned_cols=182 Identities=15% Similarity=0.154 Sum_probs=110.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDS 161 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~ 161 (303)
....|+|+|.+||||||+++.|++.+|+++|++|.++++... |..+.+++.. |.....+...+.+.+.. .
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-----G~sI~eIf~~~GE~~FR~~E~e~L~~L~----~ 171 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-----GTSVAEIFVHHGENFFRGKETDALKKLS----S 171 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-----CCCHHHHHHHhCHHHHHHHHHHHHHHHH----h
Confidence 356899999999999999999999999999999999988632 3344444443 32222222333333322 1
Q ss_pred CCCcEEEcC--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCC-
Q 022042 162 QENGWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF- 238 (303)
Q Consensus 162 ~~~~~Vldg--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~- 238 (303)
....+|-.| .+........+. . ..+|||+++.+++.+|+.....+ .| .|....
T Consensus 172 ~~~~VIStGGG~V~~~~n~~~L~-~----G~vV~Ldas~E~l~~RL~~~~~~---~R----------------PLL~~~~ 227 (303)
T PLN02199 172 RYQVVVSTGGGAVIRPINWKYMH-K----GISIWLDVPLEALAHRIAAVGTD---SR----------------PLLHDES 227 (303)
T ss_pred cCCEEEECCCcccCCHHHHHHHh-C----CeEEEEECCHHHHHHHHhhcCCC---CC----------------CcCCCCC
Confidence 123344444 223333333343 2 37999999999999999852110 00 111111
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEc-------------CCCCHHHHHHHHHHHHHHHHHhhhhcccc
Q 022042 239 DDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVN-------------GSVNKEDVFAQIDVALTNLLEQRKSALGS 300 (303)
Q Consensus 239 ~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id-------------~~~s~eev~~~I~~~l~~~l~~~~~~~~~ 300 (303)
.+.......++...++...+++.. .+ +.|+ .+.++++++.+|.+.+..++.+.+.+..+
T Consensus 228 ~d~~~~~~~~L~~L~~~R~plY~~-Ad--~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~~~~~~~~~ 299 (303)
T PLN02199 228 GDAYSVAFKRLSAIWDERGEAYTN-AN--ARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEKEETMEIP 299 (303)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHh-CC--EEEecccccccccccccCCCCHHHHHHHHHHHHHHHHhhccccccC
Confidence 111111234555556666666555 33 3344 45899999999999999999876654443
No 63
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.58 E-value=1.3e-13 Score=113.87 Aligned_cols=169 Identities=24% Similarity=0.261 Sum_probs=116.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHH----------------
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEI---------------- 147 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~---------------- 147 (303)
|.+|+++|..||||||+++.+. ++|+++|++|.+.|+..+++++..+.+.+.|......++..
T Consensus 1 M~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~ 79 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK 79 (225)
T ss_pred CeEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence 4689999999999999999995 89999999999999999999998888888776653333211
Q ss_pred ------------HHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 022042 148 ------------VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTG 215 (303)
Q Consensus 148 ------------~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g 215 (303)
...++++-+.-.....+.+|+| .|.-++- . +.+ ....+|.+.||.++-++|+.+|+
T Consensus 80 r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlD-iPLLFE~-~-~~~---~~~~tvvV~cd~~~Ql~Rl~~Rd------ 147 (225)
T KOG3220|consen 80 RQALNKITHPAIRKEMFKEILKLLLRGYRVIVLD-IPLLFEA-K-LLK---ICHKTVVVTCDEELQLERLVERD------ 147 (225)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEe-chHHHHH-h-HHh---heeeEEEEEECcHHHHHHHHHhc------
Confidence 1111122111122222334444 4432222 1 111 24578999999999999999985
Q ss_pred ceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042 216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE 292 (303)
Q Consensus 216 ~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~ 292 (303)
...++..+.|+..+....+..... -++||+++++++..+++..++..+-+
T Consensus 148 -----------------------~lse~dAe~Rl~sQmp~~~k~~~a----~~Vi~Nng~~~~l~~qv~~v~~~~~~ 197 (225)
T KOG3220|consen 148 -----------------------ELSEEDAENRLQSQMPLEKKCELA----DVVIDNNGSLEDLYEQVEKVLALLQK 197 (225)
T ss_pred -----------------------cccHHHHHHHHHhcCCHHHHHHhh----heeecCCCChHHHHHHHHHHHHHhcc
Confidence 234677777777766544433322 36899999999999999988876544
No 64
>PRK07933 thymidylate kinase; Validated
Probab=99.57 E-value=8.8e-14 Score=119.69 Aligned_cols=177 Identities=19% Similarity=0.178 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCceeehHHHHHHHHHcCCcchHHHHHHHHcCC--CcChHHHHHHH--H----
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ--LVPDEIVVTMV--K---- 153 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~--~~~~~~~~~~l--~---- 153 (303)
|+|+|+|+.||||||+++.|+++| |..++-.. +....+++.++.+++.+.... ...+.....++ .
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~----~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~ 76 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLA----FPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAG 76 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEe----cCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhh
Confidence 589999999999999999999998 33332110 000023445555555554321 10000000000 0
Q ss_pred --HHHcCCCCCCCcEEEcCCCCCH-----------------HHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCCC
Q 022042 154 --ERLSQPDSQENGWLLDGYPRSL-----------------SQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLD 211 (303)
Q Consensus 154 --~~l~~~~~~~~~~Vldg~p~~~-----------------~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~~ 211 (303)
..+......+..+|.|.|...- .+...+.. ....||++||||+++++..+|+.+|+..
T Consensus 77 ~~~~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~ 156 (213)
T PRK07933 77 ARDELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAAQ 156 (213)
T ss_pred hHHHHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhccc
Confidence 1111111225567778743211 11122222 1237999999999999999999988521
Q ss_pred CCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHh-hcceEEEcCCCCHHHHHHHHHHHH
Q 022042 212 PVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY-EDVTVEVNGSVNKEDVFAQIDVAL 287 (303)
Q Consensus 212 ~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~-~~~~~~Id~~~s~eev~~~I~~~l 287 (303)
. .+.. .+ +.....+..++ ..+.+..+.+.+ ...+++||++.++++|.++|.+.|
T Consensus 157 ~-~~~~-------------~d----~~E~~~~f~~~----v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~~~ 211 (213)
T PRK07933 157 D-ADRA-------------RD----AYERDDGLQQR----TGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAAAL 211 (213)
T ss_pred c-CCcc-------------cc----cccccHHHHHH----HHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHHHh
Confidence 0 0000 00 11111222222 222233333332 447788999999999999998766
No 65
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.56 E-value=1.4e-13 Score=108.37 Aligned_cols=108 Identities=24% Similarity=0.377 Sum_probs=76.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~ 164 (303)
+.|+|+|.||+||||+|++||+.+|+.+|.+++++++..-. ....+- .+...+.++.+...+...+.+ +
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~-----~gyDE~-y~c~i~DEdkv~D~Le~~m~~-----G 76 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLY-----EGYDEE-YKCHILDEDKVLDELEPLMIE-----G 76 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcch-----hccccc-ccCccccHHHHHHHHHHHHhc-----C
Confidence 48999999999999999999999999999999999874110 000000 011234556666777777654 6
Q ss_pred cEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCC
Q 022042 165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRL 210 (303)
Q Consensus 165 ~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~ 210 (303)
|.|+|-+.... |.+. .+|+|+.|.||-+++++||..|.+
T Consensus 77 g~IVDyHgCd~-----Fper--wfdlVvVLr~~~s~LY~RL~sRgY 115 (176)
T KOG3347|consen 77 GNIVDYHGCDF-----FPER--WFDLVVVLRTPNSVLYDRLKSRGY 115 (176)
T ss_pred CcEEeecccCc-----cchh--heeEEEEEecCchHHHHHHHHcCC
Confidence 78888532221 1111 378999999999999999999974
No 66
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.56 E-value=2.8e-14 Score=119.23 Aligned_cols=153 Identities=22% Similarity=0.316 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCC-----cCh--------------
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VPD-------------- 145 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~-----~~~-------------- 145 (303)
|+|+|+|..||||||+++.|++ +|++++++|.+.++.+..+.+....+.+.+..... +..
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 5899999999999999999988 99999999999999888777766666666543221 111
Q ss_pred ----HHHHHHH----HHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCce
Q 022042 146 ----EIVVTMV----KERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKI 217 (303)
Q Consensus 146 ----~~~~~~l----~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~ 217 (303)
.++...+ ...+..... ...+|+|. |.-.+. .+. ..+|.+|++.||.++..+|+.+|+
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~~~-~~~~v~e~-pLL~E~--~~~---~~~D~vi~V~a~~e~ri~Rl~~R~-------- 144 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRNKS-EKVVVVEI-PLLFES--GLE---KLCDEVIVVYAPEEIRIKRLMERD-------- 144 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHS-TSEEEEE--TTTTTT--TGG---GGSSEEEEEE--HHHHHHHHHHHH--------
T ss_pred HHHHHHHhHHHHHHHHHHHHhccC-CCEEEEEc-chhhhh--hHh---hhhceEEEEECCHHHHHHHHHhhC--------
Confidence 1122222 222222221 24566664 211110 011 247999999999999999999884
Q ss_pred ecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHH
Q 022042 218 YHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKED 278 (303)
Q Consensus 218 ~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~ee 278 (303)
+-+.+.+..|+..+....+.... .-++|+|++++++
T Consensus 145 ---------------------~~~~~~~~~ri~~Q~~~~~k~~~----ad~vI~N~g~~~~ 180 (180)
T PF01121_consen 145 ---------------------GLSEEEAEARIASQMPDEEKRKR----ADFVIDNNGSLEE 180 (180)
T ss_dssp ---------------------TSTHHHHHHHHHTS--HHHHHHH-----SEEEE-SSHHH-
T ss_pred ---------------------CCcHHHHHHHHHhCCCHHHHHHh----CCEEEECCCCCCC
Confidence 23366677777766554443222 2367899988764
No 67
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.55 E-value=4.2e-13 Score=111.69 Aligned_cols=162 Identities=17% Similarity=0.234 Sum_probs=94.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQ 162 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~~ 162 (303)
+..|+|.|++||||||+++.|++.+|+.+++.|..+.+.. +.. +..++.. |.....+.....+.. +..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~--g~~----i~~~~~~~g~~~fr~~e~~~l~~-l~~---- 72 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GAD----IGWVFDVEGEEGFRDREEKVINE-LTE---- 72 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHh--CcC----HhHHHHHhCHHHHHHHHHHHHHH-HHh----
Confidence 4579999999999999999999999999999998766532 111 2222221 211111111122222 221
Q ss_pred CCcEEEc-CC--CCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042 163 ENGWLLD-GY--PRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD 239 (303)
Q Consensus 163 ~~~~Vld-g~--p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~ 239 (303)
...+|+. |. +........+.+ .+.+|||++|.+++.+|+..+...|. .. ..
T Consensus 73 ~~~~vi~~ggg~v~~~~~~~~l~~----~~~vv~L~~~~e~~~~Ri~~~~~rP~---------------------~~-~~ 126 (172)
T PRK05057 73 KQGIVLATGGGSVKSRETRNRLSA----RGVVVYLETTIEKQLARTQRDKKRPL---------------------LQ-VD 126 (172)
T ss_pred CCCEEEEcCCchhCCHHHHHHHHh----CCEEEEEeCCHHHHHHHHhCCCCCCC---------------------CC-CC
Confidence 2234443 32 223333445554 34899999999999999976542211 11 01
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcC-CCCHHHHHHHHHHHHH
Q 022042 240 DTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNG-SVNKEDVFAQIDVALT 288 (303)
Q Consensus 240 d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~-~~s~eev~~~I~~~l~ 288 (303)
+..+ .+...++...+++..+.+ ++||+ ..+++++.++|.+.+.
T Consensus 127 ~~~~----~~~~l~~~R~~~Y~~~Ad--~~idt~~~s~~ei~~~i~~~l~ 170 (172)
T PRK05057 127 DPRE----VLEALANERNPLYEEIAD--VTIRTDDQSAKVVANQIIHMLE 170 (172)
T ss_pred CHHH----HHHHHHHHHHHHHHhhCC--EEEECCCCCHHHHHHHHHHHHh
Confidence 1111 244444555555555433 45665 4799999999888775
No 68
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.54 E-value=1e-13 Score=129.77 Aligned_cols=168 Identities=18% Similarity=0.259 Sum_probs=103.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCC-----cCh-------------
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VPD------------- 145 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~-----~~~------------- 145 (303)
|++|+|+|++||||||+++.|++ +|+++|++|.+.++.+..+......+.+.+..+.. +..
T Consensus 1 m~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~ 79 (395)
T PRK03333 1 MLRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEA 79 (395)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHH
Confidence 45799999999999999999987 89999999999999888765544444444322211 111
Q ss_pred -----HHHHHHHH----HHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 022042 146 -----EIVVTMVK----ERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGK 216 (303)
Q Consensus 146 -----~~~~~~l~----~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~ 216 (303)
.++...+. +.+... .++.+|+.+.|.-.+.. + ...+|.+|||++|.+++++|+.+|+.
T Consensus 80 ~~~le~i~hP~I~~~i~~~i~~~--~~~~vvv~eipLL~E~~--~---~~~~D~iI~V~ap~e~ri~Rl~~rRg------ 146 (395)
T PRK03333 80 RAVLNGIVHPLVGARRAELIAAA--PEDAVVVEDIPLLVESG--M---APLFHLVVVVDADVEVRVRRLVEQRG------ 146 (395)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc--CCCCEEEEEeeeeecCC--c---hhhCCEEEEEECCHHHHHHHHHhcCC------
Confidence 11122222 222222 13456665544221110 1 12478999999999999999988531
Q ss_pred eecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042 217 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE 292 (303)
Q Consensus 217 ~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~ 292 (303)
.+.+....++..+...... ... ..++|+++++++++..++.+.++.++.
T Consensus 147 -----------------------~s~~~a~~ri~~Q~~~e~k--~~~--AD~vIdN~~s~e~l~~~v~~~l~~~~~ 195 (395)
T PRK03333 147 -----------------------MAEADARARIAAQASDEQR--RAV--ADVWLDNSGTPDELVEAVRALWADRLL 195 (395)
T ss_pred -----------------------CCHHHHHHHHHhcCChHHH--HHh--CCEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 1123333444332211111 111 236788999999999999988877654
No 69
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.53 E-value=4.7e-14 Score=118.22 Aligned_cols=116 Identities=23% Similarity=0.356 Sum_probs=76.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCC-----cC----------------
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VP---------------- 144 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~-----~~---------------- 144 (303)
+|+|+|++||||||+++.|++ +|++++++|++.++....+......+.+.+..... +.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 488999999999999999998 99999999999999888777776666666543221 11
Q ss_pred --hHHHHHHHHHHH----cCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 145 --DEIVVTMVKERL----SQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 145 --~~~~~~~l~~~l----~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
...+...+...+ ..... ...+|+|. |...+.. +. ..+|.+|++++|.+++.+|+..|+
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~~~~-~~~vive~-plL~e~~--~~---~~~D~vv~V~a~~~~ri~Rl~~Rd 143 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAEARK-EKVVVLDI-PLLFETG--LE---KLVDRVIVVDAPPEIQIERLMKRD 143 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC-CCEEEEEe-hHhhcCC--cH---HhCCeEEEEECCHHHHHHHHHHcC
Confidence 112222222222 22111 23455554 2111100 11 247899999999999999999885
No 70
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.53 E-value=5.2e-14 Score=127.37 Aligned_cols=161 Identities=16% Similarity=0.105 Sum_probs=98.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh-CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l-g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~ 162 (303)
+++|++.|+|||||||+|+.|++++ ++.+++.|++.+.. ......+.. .+... ....+.......+......
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~-~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~l~~ 74 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSL-FGHGEWGEY--KFTKE----KEDLVTKAQEAAALAALKS 74 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHh-cCCCccccc--ccChH----HHHHHHHHHHHHHHHHHHc
Confidence 3689999999999999999999999 89999998865443 221111100 00000 0111112222222221123
Q ss_pred CCcEEEcCCCCCHHHHHHHHHh---CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042 163 ENGWLLDGYPRSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD 239 (303)
Q Consensus 163 ~~~~Vldg~p~~~~~~~~l~~~---~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~ 239 (303)
+..+|+|+++....+...|... ....-.+|+|+++.+++.+|+.+|..+ .
T Consensus 75 g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~---------------------------~ 127 (300)
T PHA02530 75 GKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGER---------------------------A 127 (300)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcC---------------------------C
Confidence 5779999988877777665442 112223799999999999999998522 1
Q ss_pred CcHHHHH---HHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHH
Q 022042 240 DTEEKVK---LRLKTHHHNVEAVLSLYED--VTVEVNGSVNKED 278 (303)
Q Consensus 240 d~~e~~~---~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~ee 278 (303)
...+.++ +|++.|.....+++..+.. .++.+|.++++.+
T Consensus 128 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~ 171 (300)
T PHA02530 128 VPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAK 171 (300)
T ss_pred CCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEECCCcCcC
Confidence 2244444 6777777666666666643 4666777766554
No 71
>PRK06762 hypothetical protein; Provisional
Probab=99.52 E-value=2.5e-13 Score=112.28 Aligned_cols=156 Identities=15% Similarity=0.200 Sum_probs=91.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh--CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY--GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l--g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~ 161 (303)
|++|+|+|+|||||||+|+.|++++ ++.+++.|.+.+......... + ....+.+.......+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~~----------~-~~~~~~~~~~~~~~~~---- 66 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGP----------G-NLSIDLIEQLVRYGLG---- 66 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCCC----------C-CcCHHHHHHHHHHHHh----
Confidence 5689999999999999999999999 566777766654332110000 0 0111222222222222
Q ss_pred CCCcEEEcCCCCCHHH---HHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCC
Q 022042 162 QENGWLLDGYPRSLSQ---ATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF 238 (303)
Q Consensus 162 ~~~~~Vldg~p~~~~~---~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~ 238 (303)
.+..+|+|+.-..... ...+.+....+..+|||++|.+++.+|..+|... .
T Consensus 67 ~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~--------------------------~ 120 (166)
T PRK06762 67 HCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKS--------------------------H 120 (166)
T ss_pred CCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhccccc--------------------------c
Confidence 2566888885222222 2333333344778999999999999999988520 0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHH
Q 022042 239 DDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVAL 287 (303)
Q Consensus 239 ~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l 287 (303)
...++.+..+++.. +.+ ..+ ..+.++.+.++++|+++|...+
T Consensus 121 ~~~~~~l~~~~~~~----~~~-~~~--~~~~~~~~~~~~~v~~~i~~~~ 162 (166)
T PRK06762 121 EFGEDDMRRWWNPH----DTL-GVI--GETIFTDNLSLKDIFDAILTDI 162 (166)
T ss_pred cCCHHHHHHHHhhc----CCc-CCC--CeEEecCCCCHHHHHHHHHHHh
Confidence 11133333333221 111 011 2245567789999999998765
No 72
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.2e-13 Score=108.92 Aligned_cols=156 Identities=19% Similarity=0.196 Sum_probs=99.7
Q ss_pred EcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHH---HHHHHHHHHcCCCCCCCcE
Q 022042 90 SGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEI---VVTMVKERLSQPDSQENGW 166 (303)
Q Consensus 90 ~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~---~~~~l~~~l~~~~~~~~~~ 166 (303)
+|..||||||+++.|++++|+.+|+-|++...... +.|..|.++.|+. ++..+.+.+......++..
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi----------~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~ 70 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANI----------EKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHV 70 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHH----------HHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCce
Confidence 48999999999999999999999999988755322 2678898888775 4444455555433334434
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHH
Q 022042 167 LLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVK 246 (303)
Q Consensus 167 Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~ 246 (303)
|+-+-.........+...... -.+|||+.+.+++.+|+..|..|.+.......+| +-|+....
T Consensus 71 vi~CSALKr~YRD~LR~~~~~-~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ll~SQf---------a~LE~P~~------- 133 (161)
T COG3265 71 VIACSALKRSYRDLLREANPG-LRFVYLDGDFDLILERMKARKGHFMPASLLDSQF---------ATLEEPGA------- 133 (161)
T ss_pred EEecHHHHHHHHHHHhccCCC-eEEEEecCCHHHHHHHHHhcccCCCCHHHHHHHH---------HHhcCCCC-------
Confidence 443321222222223332211 3589999999999999999986644221111000 00111101
Q ss_pred HHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHH
Q 022042 247 LRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTN 289 (303)
Q Consensus 247 ~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~ 289 (303)
+..++.||.+.+++++++++...|..
T Consensus 134 -----------------de~vi~idi~~~~e~vv~~~~~~l~~ 159 (161)
T COG3265 134 -----------------DEDVLTIDIDQPPEEVVAQALAWLKE 159 (161)
T ss_pred -----------------CCCEEEeeCCCCHHHHHHHHHHHHhc
Confidence 11478899999999999999888764
No 73
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.51 E-value=7.6e-14 Score=116.81 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHI 113 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i 113 (303)
..++|+|.|+.|+||||+|+.|+++||..++
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence 3579999999999999999999999997554
No 74
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.51 E-value=1e-13 Score=116.82 Aligned_cols=160 Identities=22% Similarity=0.241 Sum_probs=92.1
Q ss_pred EEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHH------------HHHHHHHHH
Q 022042 89 ISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEI------------VVTMVKERL 156 (303)
Q Consensus 89 I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~------------~~~~l~~~l 156 (303)
|+|..||||||+++.|++++....+.. +......+++.|..+++++.......... +...+...+
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~---~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l 77 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKV---IITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPAL 77 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEE---EEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcc---cccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999983222110 00001123445556666655322222211 112223333
Q ss_pred cCCCCCCCcEEEcCCC------------CCHHHHHHHHHhCC--CCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccC
Q 022042 157 SQPDSQENGWLLDGYP------------RSLSQATALKKYGF--QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKY 222 (303)
Q Consensus 157 ~~~~~~~~~~Vldg~p------------~~~~~~~~l~~~~~--~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~ 222 (303)
.. +..+|+|.|- ........+..... .||++|||++++++..+|+.+|...
T Consensus 78 ~~----g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~----------- 142 (186)
T PF02223_consen 78 KR----GKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEK----------- 142 (186)
T ss_dssp HT----TSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSST-----------
T ss_pred cC----CCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCcc-----------
Confidence 32 6678888521 12334433443322 8999999999999999999998620
Q ss_pred CCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHH
Q 022042 223 SPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQI 283 (303)
Q Consensus 223 ~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I 283 (303)
++..+.-...+...++.+..+.+ +...+++||++.++++|.++|
T Consensus 143 ----------------~~~~~~~~~~~~~~~~~y~~l~~-~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 143 ----------------DDEEEEDLEYLRRVREAYLELAK-DPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp ----------------TTTTTHHHHHHHHHHHHHHHHHH-TTTTEEEEETTS-HHHHHHHH
T ss_pred ----------------chHHHHHHHHHHHHHHHHHHHHc-CCCCEEEEECCCCHHHHHhhC
Confidence 01111222234444444555555 566889999999999999886
No 75
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=2.2e-13 Score=107.90 Aligned_cols=120 Identities=23% Similarity=0.280 Sum_probs=82.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHH---HHHHHHHHcCCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIV---VTMVKERLSQPD 160 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~---~~~l~~~l~~~~ 160 (303)
+-.|+|.|++||||||+++.|+++|++.+++.|++..... .+.+..|.++.|+.. ...+...+....
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~N----------veKM~~GipLnD~DR~pWL~~i~~~~~~~l 81 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPAN----------VEKMTQGIPLNDDDRWPWLKKIAVELRKAL 81 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHH----------HHHHhcCCCCCcccccHHHHHHHHHHHHHh
Confidence 3489999999999999999999999999999998865543 236788888877653 333333333333
Q ss_pred CCCCcEEEcCCCCCHHHHHHHHH------hCCCC---cEEEEEEcCHHHHHHHHhcCCCCCC
Q 022042 161 SQENGWLLDGYPRSLSQATALKK------YGFQP---DLFILLEVPEDTLVERVVGRRLDPV 213 (303)
Q Consensus 161 ~~~~~~Vldg~p~~~~~~~~l~~------~~~~p---d~vI~L~~~~e~~~~Rl~~R~~~~~ 213 (303)
..++++|+-+-.........+.. .+..| -.+|||.++.+++.+|+..|..|.+
T Consensus 82 ~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFM 143 (191)
T KOG3354|consen 82 ASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFM 143 (191)
T ss_pred hcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccC
Confidence 34788888763222222222332 11122 3589999999999999999986544
No 76
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.48 E-value=3.2e-12 Score=116.10 Aligned_cols=168 Identities=14% Similarity=0.149 Sum_probs=96.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDS 161 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~ 161 (303)
....|+|+|++||||||+++.|++++|++++++|..+.+. .|..+.+++.. |...........+...+..
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~------~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~--- 202 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIERE------AGLSVSEIFALYGQEGYRRLERRALERLIAE--- 202 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHH------hCCCHHHHHHHHCHHHHHHHHHHHHHHHHhh---
Confidence 4468999999999999999999999999999999877653 22223333322 2111112222223332322
Q ss_pred CCCcEEE-cCC--CCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCC
Q 022042 162 QENGWLL-DGY--PRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF 238 (303)
Q Consensus 162 ~~~~~Vl-dg~--p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~ 238 (303)
...+|+ .|. +........+.. ..++|||++|.+++.+|+.+|..... +.. .
T Consensus 203 -~~~~VI~~Ggg~v~~~~~~~~l~~----~~~~V~L~a~~e~~~~Rl~~r~~~rp--------------------~~~-~ 256 (309)
T PRK08154 203 -HEEMVLATGGGIVSEPATFDLLLS----HCYTVWLKASPEEHMARVRAQGDLRP--------------------MAD-N 256 (309)
T ss_pred -CCCEEEECCCchhCCHHHHHHHHh----CCEEEEEECCHHHHHHHHhcCCCCCC--------------------CCC-C
Confidence 222344 432 222222223332 34799999999999999988742100 000 0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCC-CHHHHHHHHHHHHHHHHH
Q 022042 239 DDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSV-NKEDVFAQIDVALTNLLE 292 (303)
Q Consensus 239 ~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~-s~eev~~~I~~~l~~~l~ 292 (303)
++..+.+++.+ ....++++. .-++||++. +++++.++|...+..++.
T Consensus 257 ~~~~e~i~~~~----~~R~~~y~~---ad~~I~t~~~s~ee~~~~I~~~l~~~~~ 304 (309)
T PRK08154 257 REAMEDLRRIL----ASREPLYAR---ADAVVDTSGLTVAQSLARLRELVRPALG 304 (309)
T ss_pred CChHHHHHHHH----HHHHHHHHh---CCEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence 11223333322 222333333 224567654 999999999999977653
No 77
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.45 E-value=3.7e-12 Score=108.03 Aligned_cols=124 Identities=13% Similarity=0.130 Sum_probs=74.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcch-HHHHHHHHcCCCcCh----H----------H
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENG-KRAKEHMEKGQLVPD----E----------I 147 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~-~~i~~~~~~g~~~~~----~----------~ 147 (303)
.+++|+|.|+|||||||+|+.|++++|+.++..+|++++.+......+ ......+..|..+++ . .
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~ 81 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA 81 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999877533322 111111111111111 1 1
Q ss_pred HHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEc-CHHHHHHHHhcCC
Q 022042 148 VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEV-PEDTLVERVVGRR 209 (303)
Q Consensus 148 ~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~-~~e~~~~Rl~~R~ 209 (303)
+..-+...+......+..+|+|+..............+ ..+++|.+ +++...+|+..|.
T Consensus 82 v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~~~~---v~~i~l~v~d~e~lr~Rl~~R~ 141 (197)
T PRK12339 82 IMPGINRVIRRALLNGEDLVIESLYFHPPMIDENRTNN---IRAFYLYIRDAELHRSRLADRI 141 (197)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHhcC---eEEEEEEeCCHHHHHHHHHHHh
Confidence 11111111222222377899998544444433222222 24566655 6778889999886
No 78
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.45 E-value=2.2e-12 Score=111.61 Aligned_cols=124 Identities=22% Similarity=0.257 Sum_probs=66.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHH--HHHcCCcchH------HHHHHHHcCC---CcChHHHHHHH--
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRA--EIAAGSENGK------RAKEHMEKGQ---LVPDEIVVTMV-- 152 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~--~~~~~~~~~~------~i~~~~~~g~---~~~~~~~~~~l-- 152 (303)
+|+|.|..||||||+++.|+++++..++........ ....+...++ .++++..+.. .........++
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~ 80 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS 80 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence 488999999999999999999998755533211100 0011122221 1333333221 11111111111
Q ss_pred -----HHHHcCCCCCCCcEEEcCCCCCH------------------HHHHHHHH----hCCCCcEEEEEEcCHHHHHHHH
Q 022042 153 -----KERLSQPDSQENGWLLDGYPRSL------------------SQATALKK----YGFQPDLFILLEVPEDTLVERV 205 (303)
Q Consensus 153 -----~~~l~~~~~~~~~~Vldg~p~~~------------------~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl 205 (303)
...+......+..+|+|++...- .....+.+ ....||++|||+++++++.+|+
T Consensus 81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri 160 (219)
T cd02030 81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI 160 (219)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence 11111122235678989853211 01111111 1257999999999999999999
Q ss_pred hcCC
Q 022042 206 VGRR 209 (303)
Q Consensus 206 ~~R~ 209 (303)
.+|+
T Consensus 161 ~~R~ 164 (219)
T cd02030 161 KKRG 164 (219)
T ss_pred HHcC
Confidence 9885
No 79
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.44 E-value=3.6e-12 Score=104.59 Aligned_cols=154 Identities=22% Similarity=0.255 Sum_probs=91.1
Q ss_pred CCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCCCCCcEEEcC-
Q 022042 93 PASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQENGWLLDG- 170 (303)
Q Consensus 93 pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~~~~~~Vldg- 170 (303)
|||||||+++.||+.+|++++++|+++.+. .|..+.+++.. |.....+.....+.+.+.. ...+|..|
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~------~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~----~~~VIa~GG 70 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEER------TGMSISEIFAEEGEEAFRELESEALRELLKE----NNCVIACGG 70 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHH------HTSHHHHHHHHHHHHHHHHHHHHHHHHHHCS----SSEEEEE-T
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHH------hCCcHHHHHHcCChHHHHHHHHHHHHHHhcc----CcEEEeCCC
Confidence 799999999999999999999999998774 34555555543 2111122333444443333 24455443
Q ss_pred -CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHH
Q 022042 171 -YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRL 249 (303)
Q Consensus 171 -~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~ 249 (303)
.+......+.+.+.+ .+|||+++++++.+|+..+...| +. .+ ........
T Consensus 71 G~~~~~~~~~~L~~~g----~vI~L~~~~~~l~~Rl~~~~~Rp---------------------~l---~~-~~~~~~~~ 121 (158)
T PF01202_consen 71 GIVLKEENRELLKENG----LVIYLDADPEELAERLRARDNRP---------------------LL---KG-KMEHEEIL 121 (158)
T ss_dssp TGGGSHHHHHHHHHHS----EEEEEE--HHHHHHHHHHHCTSG---------------------GT---CS-HHHHHHHH
T ss_pred CCcCcHHHHHHHHhCC----EEEEEeCCHHHHHHHHhCCCCCC---------------------CC---CC-CChHHHHH
Confidence 445556666666444 79999999999999998764211 00 11 11111112
Q ss_pred HHHHHHHHHHHHHhhcceEEEcCCCCH-HHHHHHHHHHHH
Q 022042 250 KTHHHNVEAVLSLYEDVTVEVNGSVNK-EDVFAQIDVALT 288 (303)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~Id~~~s~-eev~~~I~~~l~ 288 (303)
..+. ...++++.+. .++++.+... ++++++|.+.|+
T Consensus 122 ~~~~-~R~~~Y~~~a--~~~v~~~~~~~~~i~~~i~~~l~ 158 (158)
T PF01202_consen 122 ELLF-EREPLYEQAA--DIVVDTDGSPPEEIAEEILEFLK 158 (158)
T ss_dssp HHHH-HHHHHHHHHS--SEEEETSSCHHHHHHHHHHHHH-
T ss_pred HHHH-HHHHHHHhcC--eEEEeCCCCCHHHHHHHHHHHhC
Confidence 2222 3444444443 3456666655 999999988874
No 80
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.44 E-value=5.4e-12 Score=122.70 Aligned_cols=166 Identities=18% Similarity=0.194 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQE 163 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~~~ 163 (303)
..|+|+|+|||||||+++.||+++|++++++|+++.+. .|..+.+++.. |...+.+.-.+.+.+.+.. .
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~------~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~----~ 76 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIERE------IGMSIPSYFEEYGEPAFREVEADVVADMLED----F 76 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHH------HCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc----C
Confidence 47999999999999999999999999999999998875 35556666644 4322233333333332221 2
Q ss_pred CcEEEcC--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCc
Q 022042 164 NGWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDT 241 (303)
Q Consensus 164 ~~~Vldg--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~ 241 (303)
+.+|-.| .+........+.+....-..+|||+++++++.+|+..+...| +... +.
T Consensus 77 ~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RP---------------------ll~~--~~ 133 (542)
T PRK14021 77 DGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRP---------------------MLNG--DA 133 (542)
T ss_pred CeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCC---------------------CCCC--Cc
Confidence 3344344 333333343332211112379999999999999997543111 1111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcceEEEcC-CCCHHHHHHHHHHHHHH
Q 022042 242 EEKVKLRLKTHHHNVEAVLSLYEDVTVEVNG-SVNKEDVFAQIDVALTN 289 (303)
Q Consensus 242 ~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~-~~s~eev~~~I~~~l~~ 289 (303)
. +++...++...+++..+.+ ++|++ ..++++++++|.+.+..
T Consensus 134 ~----~~~~~l~~~R~~~Y~~~Ad--~~i~~~~~~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 134 N----KRWKKLFKQRDPVFRQVAN--VHVHTRGLTPQAAAKKLIDMVAE 176 (542)
T ss_pred H----HHHHHHHHHHHHHHHhhCC--EEEECCCCCHHHHHHHHHHHHHh
Confidence 1 2344444445555544433 34554 46999999999888864
No 81
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.44 E-value=2.6e-12 Score=105.86 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=86.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcCh---HHHHHHHHHHHcCCCCCC
Q 022042 87 IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD---EIVVTMVKERLSQPDSQE 163 (303)
Q Consensus 87 I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~---~~~~~~l~~~l~~~~~~~ 163 (303)
|+|.|++||||||+++.|++.++..+++.|++....... ....+....+ +.+...+.+.+......+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 70 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIE----------KMSAGIPLNDDDRWPWLQNLNDASTAAAAKN 70 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHH----------HHHcCCCCChhhHHHHHHHHHHHHHHHHhcC
Confidence 568999999999999999999999999998874321000 0000110000 011111111221111113
Q ss_pred CcEEEc-CCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcH
Q 022042 164 NGWLLD-GYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTE 242 (303)
Q Consensus 164 ~~~Vld-g~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~ 242 (303)
...|++ ++. .......+...+ ....+|||++|.+++.+|+..|..+. ...
T Consensus 71 ~~~Vi~~t~~-~~~~r~~~~~~~-~~~~~i~l~~~~e~~~~R~~~R~~~~---------------------------~~~ 121 (163)
T TIGR01313 71 KVGIITCSAL-KRHYRDILREAE-PNLHFIYLSGDKDVILERMKARKGHF---------------------------MKA 121 (163)
T ss_pred CCEEEEeccc-HHHHHHHHHhcC-CCEEEEEEeCCHHHHHHHHHhccCCC---------------------------CCH
Confidence 333555 443 233333444333 23347999999999999999885110 012
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-cceEEEcCCCCHHHHHHHHHHHHH
Q 022042 243 EKVKLRLKTHHHNVEAVLSLYE-DVTVEVNGSVNKEDVFAQIDVALT 288 (303)
Q Consensus 243 e~~~~r~~~~~~~~~~~~~~~~-~~~~~Id~~~s~eev~~~I~~~l~ 288 (303)
+.+...+..+. .+ .+. ..+++||++.+++++.++|.+.|.
T Consensus 122 ~~i~~~~~~~~---~~---~~~e~~~~~id~~~~~~~~~~~~~~~~~ 162 (163)
T TIGR01313 122 DMLESQFAALE---EP---LADETDVLRVDIDQPLEGVEEDCIAVVL 162 (163)
T ss_pred HHHHHHHHHhC---CC---CCCCCceEEEECCCCHHHHHHHHHHHHh
Confidence 22222222211 00 011 146889999999999999888764
No 82
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.43 E-value=1.5e-12 Score=109.82 Aligned_cols=162 Identities=12% Similarity=0.080 Sum_probs=89.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHH----cC-CcchHHHHHHHHcCCCcChHHH-------HHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA----AG-SENGKRAKEHMEKGQLVPDEIV-------VTMV 152 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~----~~-~~~~~~i~~~~~~g~~~~~~~~-------~~~l 152 (303)
.+|+|+||+||||||+++.|+..++..++..+..+..... .. ...++...+..+.+.....+.. ..-+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~~ 82 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIEI 82 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHHH
Confidence 4789999999999999999999877655444332221100 00 0111121122222211100000 0012
Q ss_pred HHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHh
Q 022042 153 KERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAA 232 (303)
Q Consensus 153 ~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~ 232 (303)
...+.. +..+|++|.-.. ...+.+....+..+|||++|.+++.+|+..|..
T Consensus 83 ~~~l~~----g~~VI~~G~~~~---~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~---------------------- 133 (186)
T PRK10078 83 DLWLHA----GFDVLVNGSRAH---LPQARARYQSALLPVCLQVSPEILRQRLENRGR---------------------- 133 (186)
T ss_pred HHHHhC----CCEEEEeChHHH---HHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCC----------------------
Confidence 333322 456888775111 112222222355789999999999999987731
Q ss_pred hhccCCCCcHHHHHHHHHHHHHHHHHHHHHhh-cceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042 233 RLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE-DVTVEVNGSVNKEDVFAQIDVALTNL 290 (303)
Q Consensus 233 rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~-~~~~~Id~~~s~eev~~~I~~~l~~~ 290 (303)
...+.+.+|++.+. .|. ...++|+++++++++.++|.+.+..-
T Consensus 134 -------~~~~~i~~rl~r~~--------~~~~ad~~vi~~~~s~ee~~~~i~~~l~~~ 177 (186)
T PRK10078 134 -------ENASEINARLARAA--------RYQPQDCHTLNNDGSLRQSVDTLLTLLHLS 177 (186)
T ss_pred -------CCHHHHHHHHHHhh--------hhccCCEEEEeCCCCHHHHHHHHHHHHhhc
Confidence 12345666664321 111 23467888899999999998888653
No 83
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.43 E-value=2.3e-12 Score=108.20 Aligned_cols=38 Identities=34% Similarity=0.572 Sum_probs=36.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE 122 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~ 122 (303)
++|.|-||.||||||+|+.||++||+.|++.+.++|..
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~ 42 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV 42 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence 79999999999999999999999999999999988865
No 84
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.42 E-value=1.7e-12 Score=104.32 Aligned_cols=114 Identities=25% Similarity=0.360 Sum_probs=72.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcch---HHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENG---KRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~---~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~ 162 (303)
+|+++|+|||||||+++.|++.++..+|+.|++.........+.. ...... ..+.+...+...+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~---- 69 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEER-------AYQILNAAIRKALRN---- 69 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHH-------HHHHHHHHHHHHHHT----
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHH-------HHHHHHHHHHHHHHc----
Confidence 588999999999999999999999999999988765432111100 000000 011223334444433
Q ss_pred CCcEEEcCCCCCHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCC
Q 022042 163 ENGWLLDGYPRSLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRL 210 (303)
Q Consensus 163 ~~~~Vldg~p~~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~ 210 (303)
+..+|+|...........+.+ ....+..+|+|+++.+++.+|+..|..
T Consensus 70 g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~ 120 (143)
T PF13671_consen 70 GNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNR 120 (143)
T ss_dssp T-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHC
T ss_pred CCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCC
Confidence 567889864444444333333 233466899999999999999999863
No 85
>PRK07261 topology modulation protein; Provisional
Probab=99.42 E-value=6.4e-13 Score=110.50 Aligned_cols=101 Identities=22% Similarity=0.283 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~ 164 (303)
++|+|+|++||||||+|+.|++.+|+++++.|.+.... .....+.+.+...+...+.+ .
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~----------------~~~~~~~~~~~~~~~~~~~~-----~ 59 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP----------------NWQERDDDDMIADISNFLLK-----H 59 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc----------------ccccCCHHHHHHHHHHHHhC-----C
Confidence 47999999999999999999999999999988764210 11122334444555554433 3
Q ss_pred cEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCC
Q 022042 165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRL 210 (303)
Q Consensus 165 ~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~ 210 (303)
.||+||..........+. ..|.+|||++|.++++.|+.+|..
T Consensus 60 ~wIidg~~~~~~~~~~l~----~ad~vI~Ld~p~~~~~~R~lkR~~ 101 (171)
T PRK07261 60 DWIIDGNYSWCLYEERMQ----EADQIIFLNFSRFNCLYRAFKRYL 101 (171)
T ss_pred CEEEcCcchhhhHHHHHH----HCCEEEEEcCCHHHHHHHHHHHHH
Confidence 499999655433333344 368999999999999999998853
No 86
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.38 E-value=2.6e-12 Score=108.09 Aligned_cols=164 Identities=18% Similarity=0.293 Sum_probs=97.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh--CCcee--ehHHHHHHHHHcCCcc----hHHHHHHHHcCCCcChHH--------
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY--GLVHI--AAGDLLRAEIAAGSEN----GKRAKEHMEKGQLVPDEI-------- 147 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l--g~~~i--~~d~l~~~~~~~~~~~----~~~i~~~~~~g~~~~~~~-------- 147 (303)
++.|+|.||+||||+|+++.|.+.+ ++.++ .+..-.+.....+.+. .+.+.+.+..|..+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 3579999999999999999999986 23222 1111111100111111 145555556555443221
Q ss_pred HHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEE-cCHHHHHHHHhcCCCCCCCCceecccCCCCC
Q 022042 148 VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLE-VPEDTLVERVVGRRLDPVTGKIYHVKYSPPE 226 (303)
Q Consensus 148 ~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~-~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~ 226 (303)
....+.+.+.. ++.+|+|..+....++... ...| ++|||. .+.+++.+|+.+|.
T Consensus 82 ~~~~i~~~~~~----~~~~ild~~~~~~~~l~~~---~~~~-~vIfi~~~s~~~l~~rl~~R~----------------- 136 (184)
T smart00072 82 SKETIRQVAEQ----GKHCLLDIDPQGVKQLRKA---QLYP-IVIFIAPPSSEELERRLRGRG----------------- 136 (184)
T ss_pred CHHHHHHHHHc----CCeEEEEECHHHHHHHHHh---CCCc-EEEEEeCcCHHHHHHHHHhcC-----------------
Confidence 12233444433 6778999877666555432 2233 688887 55667888888764
Q ss_pred chHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHH
Q 022042 227 TDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTN 289 (303)
Q Consensus 227 ~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~ 289 (303)
++..+.+++|+........ .+...-.+|.++ ++++.++++.++|.+
T Consensus 137 ------------~~~~~~i~~rl~~a~~~~~----~~~~fd~~I~n~-~l~~~~~~l~~~i~~ 182 (184)
T smart00072 137 ------------TETAERIQKRLAAAQKEAQ----EYHLFDYVIVND-DLEDAYEELKEILEA 182 (184)
T ss_pred ------------CCCHHHHHHHHHHHHHHHh----hhccCCEEEECc-CHHHHHHHHHHHHHh
Confidence 4457778888887544432 222223456665 789998888888864
No 87
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.38 E-value=9.2e-12 Score=101.26 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=66.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCCcE
Q 022042 87 IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 166 (303)
Q Consensus 87 I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~ 166 (303)
|+|+|++||||||+++.|++.+|+.+++.|.++...... .. .+++... ..+.+.......+..... ..++
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~----~~~~~~~---~~~~~~~~e~~~~~~~~~-~~~~ 71 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SI----PEIFAEE---GEEGFRELEREVLLLLLT-KENA 71 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CH----HHHHHHH---CHHHHHHHHHHHHHHHhc-cCCc
Confidence 789999999999999999999999999999988765321 11 1222211 112222211111211112 2344
Q ss_pred EEc-C--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 167 LLD-G--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 167 Vld-g--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
|++ | +.........+. ...++|||++|.+++.+|+.+|.
T Consensus 72 vi~~g~~~i~~~~~~~~~~----~~~~~i~l~~~~e~~~~R~~~r~ 113 (154)
T cd00464 72 VIATGGGAVLREENRRLLL----ENGIVVWLDASPEELLERLARDK 113 (154)
T ss_pred EEECCCCccCcHHHHHHHH----cCCeEEEEeCCHHHHHHHhccCC
Confidence 554 3 222222222222 24589999999999999998874
No 88
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.37 E-value=1.6e-11 Score=102.49 Aligned_cols=124 Identities=11% Similarity=0.168 Sum_probs=70.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCc--eeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChH---HHHHHHHHHHc
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLV--HIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDE---IVVTMVKERLS 157 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~--~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~---~~~~~l~~~l~ 157 (303)
..+|+|+|+|||||||+++.|++.++.. +++.|++..............+ .+.. +...+.. .....+...+.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~y~~~~~~~~ 79 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGI--EFDGDGGVSPGPEFRLLEGAWYEAVA 79 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhccccccc--ccCccCCcccchHHHHHHHHHHHHHH
Confidence 3589999999999999999999998654 4567766554211100000000 0000 0001111 12233333333
Q ss_pred CCCCCCCcEEEcC-CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 158 QPDSQENGWLLDG-YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 158 ~~~~~~~~~Vldg-~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
.....+..+|+|. ++........+......+-.+|||+||.+++.+|+.+|.
T Consensus 80 ~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~ 132 (175)
T cd00227 80 AMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARG 132 (175)
T ss_pred HHHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcC
Confidence 3334477899996 442222223344333345679999999999999999885
No 89
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.37 E-value=1.6e-11 Score=100.23 Aligned_cols=176 Identities=21% Similarity=0.247 Sum_probs=114.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHH-----------H
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVV-----------T 150 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~-----------~ 150 (303)
.+..+|++.|..+|||||+|..|.+.+. .... ...+..+....+..|..+..++.+...+++..+. .
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~-~~~~-~~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~ 80 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESLI-PGLD-PAELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS 80 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHHH-hccC-hHHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence 3456899999999999999999999873 2222 2334444455678888898888887777766543 2
Q ss_pred HHHHHHcCCCCCCCcEEEcCCCC-----------CHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceec
Q 022042 151 MVKERLSQPDSQENGWLLDGYPR-----------SLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYH 219 (303)
Q Consensus 151 ~l~~~l~~~~~~~~~~Vldg~p~-----------~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~ 219 (303)
++.+.+.+ +..+|+|.|-. ..+++..++..-.+||+++||+++++. ..|..+++.
T Consensus 81 ~i~e~l~k----g~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~-~a~rggfG~--------- 146 (208)
T KOG3327|consen 81 LIKEKLAK----GTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPED-AARRGGFGE--------- 146 (208)
T ss_pred HHHHHHhc----CCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHH-HHHhcCcch---------
Confidence 33444433 56689997532 233333344455789999999999998 444444431
Q ss_pred ccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHhh
Q 022042 220 VKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQR 294 (303)
Q Consensus 220 ~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~~ 294 (303)
+|. + ...++++...+++. +...-...+.++|++.++++|.++|..+++..+...
T Consensus 147 ------------Ery-----e-~v~fqekv~~~~q~---l~r~e~~~~~~vDAs~sve~V~~~V~~i~e~~~~~~ 200 (208)
T KOG3327|consen 147 ------------ERY-----E-TVAFQEKVLVFFQK---LLRKEDLNWHVVDASKSVEKVHQQVRSLVENVLSEP 200 (208)
T ss_pred ------------hHH-----H-HHHHHHHHHHHHHH---HHhccCCCeEEEecCccHHHHHHHHHHHHHHhccCC
Confidence 111 1 22223333333222 222233467899999999999999999999887653
No 90
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.37 E-value=1e-11 Score=106.60 Aligned_cols=39 Identities=31% Similarity=0.465 Sum_probs=32.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC---CceeehHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLLR 120 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg---~~~i~~d~l~~ 120 (303)
.++.+|+|.|++||||||+++.|++.++ +.+++.|+++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~ 45 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYK 45 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence 5688999999999999999999999983 45677777654
No 91
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.37 E-value=1e-11 Score=109.49 Aligned_cols=109 Identities=20% Similarity=0.303 Sum_probs=64.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CC--ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042 86 KIMISGAPASGKGTQCELIKEKY---GL--VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l---g~--~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~ 160 (303)
+|+|+|+|||||||+|+.|++.+ |+ .+++.|. ++..+.. +.......+ .+.....+...+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~-lr~~~~~---~~~~~e~~~-------~~~~~~~i~~~l~~-- 67 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDL-IRESFPV---WKEKYEEFI-------RDSTLYLIKTALKN-- 67 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHH-HHHHhHH---hhHHhHHHH-------HHHHHHHHHHHHhC--
Confidence 47899999999999999999987 33 4455543 3332211 000011111 12223344444433
Q ss_pred CCCCcEEEcCCCCCHHHHHH---HHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 161 SQENGWLLDGYPRSLSQATA---LKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 161 ~~~~~~Vldg~p~~~~~~~~---l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
+..+|+|+.......... +......+.++|||++|.+++.+|...|.
T Consensus 68 --~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~ 117 (249)
T TIGR03574 68 --KYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERG 117 (249)
T ss_pred --CCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCC
Confidence 456888985433222222 22233357789999999999999998774
No 92
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.34 E-value=2.3e-11 Score=102.96 Aligned_cols=117 Identities=21% Similarity=0.204 Sum_probs=63.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcCh--H--H---HHHHHHHHHcC
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD--E--I---VVTMVKERLSQ 158 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~--~--~---~~~~l~~~l~~ 158 (303)
+|+|+|++||||||+++.|++++|+.++.-..- .....+..+++++.+...... + . ....+.+.+..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~------~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~ 74 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVE------PDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEH 74 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCcccccccc------ccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 488999999999999999999888654422110 000011112222221100000 0 0 11111222221
Q ss_pred CCCCCCcEEEcCCCCCHH------------------HHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 159 PDSQENGWLLDGYPRSLS------------------QATALKK----YGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 159 ~~~~~~~~Vldg~p~~~~------------------~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
...+..+|+|.++.... ....+.. ....||++|||+++++++.+|+.+|.
T Consensus 75 -~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~ 146 (193)
T cd01673 75 -LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRG 146 (193)
T ss_pred -cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 22356788998654211 0001111 13579999999999999999999885
No 93
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.33 E-value=2e-11 Score=116.74 Aligned_cols=41 Identities=29% Similarity=0.451 Sum_probs=38.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE 122 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~ 122 (303)
..+++|+|.|++||||||+|+.|+++||+.+++.|.++|..
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 46789999999999999999999999999999999998874
No 94
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.31 E-value=1.1e-11 Score=103.35 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=63.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHH----HHHH
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEI----VVTM 151 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~----~~~~ 151 (303)
..++.+|+|+|++||||||+++.|+++++ ..+++.|.+ ++.+... +....... ....
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~-r~~~~~~-------------~~~~~~~~~~~~~~~~ 69 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL-REILGHY-------------GYDKQSRIEMALKRAK 69 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH-HhhcCCC-------------CCCHHHHHHHHHHHHH
Confidence 34678999999999999999999999885 556665544 3322110 00000110 1111
Q ss_pred HHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhc
Q 022042 152 VKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVG 207 (303)
Q Consensus 152 l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~ 207 (303)
+...+. ..+..+|+|+.. .......+......+.++|||+++++++.+|+.+
T Consensus 70 l~~~l~---~~g~~VI~~~~~-~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 70 LAKFLA---DQGMIVIVTTIS-MFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred HHHHHH---hCCCEEEEEeCC-cHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchh
Confidence 222222 224568888753 2222222222223456899999999999999753
No 95
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.31 E-value=9.5e-12 Score=106.58 Aligned_cols=166 Identities=22% Similarity=0.280 Sum_probs=91.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCce-eehHHHHHHHHHcCCc--------chHHHHHHHHcCCCcChHH----H
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVH-IAAGDLLRAEIAAGSE--------NGKRAKEHMEKGQLVPDEI----V 148 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~-i~~d~l~~~~~~~~~~--------~~~~i~~~~~~g~~~~~~~----~ 148 (303)
..+++|+|+||+||||||+++.|.+. +..+ +......+. ...+.. -...+...+..+..+.... .
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~-~~~~~~~~~~ttr~-~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~ 88 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER-KLPFHFVVTATTRP-KRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNY 88 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc-CCcccccccccCCC-CCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCce
Confidence 35678999999999999999999764 2211 100000000 000000 0112222333333221100 0
Q ss_pred ----HHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcC--HHHHHHHHhcCCCCCCCCceecccC
Q 022042 149 ----VTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVP--EDTLVERVVGRRLDPVTGKIYHVKY 222 (303)
Q Consensus 149 ----~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~--~e~~~~Rl~~R~~~~~~g~~~~~~~ 222 (303)
...+...+.. +..+|+|.-. .-+..+.+. .||.++++.+| .+++.+|+.+|.
T Consensus 89 YGt~~~~i~~~~~~----g~~vi~~~~~---~g~~~l~~~--~pd~~~if~~pps~e~l~~Rl~~R~------------- 146 (206)
T PRK14738 89 YGVPKAPVRQALAS----GRDVIVKVDV---QGAASIKRL--VPEAVFIFLAPPSMDELTRRLELRR------------- 146 (206)
T ss_pred ecCCHHHHHHHHHc----CCcEEEEcCH---HHHHHHHHh--CCCeEEEEEeCCCHHHHHHHHHHcC-------------
Confidence 1122323322 5557776532 233334433 37887777765 557899998874
Q ss_pred CCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042 223 SPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL 290 (303)
Q Consensus 223 ~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~ 290 (303)
++..+.+.+|+..++..... .+...++.||++.++++++++|.+.|...
T Consensus 147 ----------------~~~~~~~~~Rl~~~~~e~~~---~~~~~~~iId~~~~~e~v~~~i~~~l~~~ 195 (206)
T PRK14738 147 ----------------TESPEELERRLATAPLELEQ---LPEFDYVVVNPEDRLDEAVAQIMAIISAE 195 (206)
T ss_pred ----------------CCCHHHHHHHHHHHHHHHhc---ccCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 23356777788776554332 12224678999999999999999999765
No 96
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.31 E-value=8.7e-11 Score=112.66 Aligned_cols=109 Identities=22% Similarity=0.316 Sum_probs=67.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQE 163 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~~~ 163 (303)
|.|+|+|++||||||+++.|++++|+.++++|+++.+. .|..+.+++.. |.....+...+.+.+.... .
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~------~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~----~ 70 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERR------EGRSVRRIFEEDGEEYFRLKEKELLRELVER----D 70 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHH------cCCCHHHHHHHhhhHHHHHHHHHHHHHHhhc----C
Confidence 47999999999999999999999999999999998763 33333443332 2211122222222222111 1
Q ss_pred CcEEEcC--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcC
Q 022042 164 NGWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (303)
Q Consensus 164 ~~~Vldg--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R 208 (303)
..+|-.| ..........+.+ +.+|||+++.+++.+|+..+
T Consensus 71 ~~Vis~Gggvv~~~~~r~~l~~-----~~vI~L~as~e~l~~Rl~~~ 112 (488)
T PRK13951 71 NVVVATGGGVVIDPENRELLKK-----EKTLFLYAPPEVLMERVTTE 112 (488)
T ss_pred CEEEECCCccccChHHHHHHhc-----CeEEEEECCHHHHHHHhccC
Confidence 2233233 2223334444442 46999999999999999754
No 97
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.30 E-value=1.3e-11 Score=103.86 Aligned_cols=163 Identities=18% Similarity=0.282 Sum_probs=86.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcc--------hHHHHHHHHcCCCcChHH------
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSEN--------GKRAKEHMEKGQLVPDEI------ 147 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~--------~~~i~~~~~~g~~~~~~~------ 147 (303)
.++++|+|+||+|||||||++.|.+++.-.+++....-|.. ..+... .+.+.+.+..+..+....
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~-r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~Y 80 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP-RPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYY 80 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC-CCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeee
Confidence 35789999999999999999999988732233332222211 111111 122333333333221100
Q ss_pred --HHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCc--EEEEEEcC-HHHHHHHHhcCCCCCCCCceecccC
Q 022042 148 --VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPD--LFILLEVP-EDTLVERVVGRRLDPVTGKIYHVKY 222 (303)
Q Consensus 148 --~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd--~vI~L~~~-~e~~~~Rl~~R~~~~~~g~~~~~~~ 222 (303)
-..-+...+. .++.+|+|--+....+ +... .|+ ++|||..| .+++.+|+.+|+
T Consensus 81 Gt~~~~i~~~~~----~g~~~i~d~~~~g~~~---l~~~--~~~~~~~Ifi~pps~e~l~~RL~~R~------------- 138 (186)
T PRK14737 81 GTPKAFIEDAFK----EGRSAIMDIDVQGAKI---IKEK--FPERIVTIFIEPPSEEEWEERLIHRG------------- 138 (186)
T ss_pred cCcHHHHHHHHH----cCCeEEEEcCHHHHHH---HHHh--CCCCeEEEEEECCCHHHHHHHHHhcC-------------
Confidence 1111222222 2455666643322222 2222 233 46666664 566677776664
Q ss_pred CCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHH
Q 022042 223 SPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALT 288 (303)
Q Consensus 223 ~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~ 288 (303)
.+.++.+++|++....+... ... .-++|+++ ++++..+++..+|.
T Consensus 139 ----------------~~s~e~i~~Rl~~~~~e~~~-~~~---~D~vI~N~-dle~a~~ql~~ii~ 183 (186)
T PRK14737 139 ----------------TDSEESIEKRIENGIIELDE-ANE---FDYKIIND-DLEDAIADLEAIIC 183 (186)
T ss_pred ----------------CCCHHHHHHHHHHHHHHHhh-hcc---CCEEEECc-CHHHHHHHHHHHHh
Confidence 44577888888876543321 112 23566777 89999888887764
No 98
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.28 E-value=2.5e-11 Score=97.83 Aligned_cols=103 Identities=23% Similarity=0.302 Sum_probs=63.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCCc
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENG 165 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~ 165 (303)
+|+|+|++||||||+|+.|++++|+++++.+.+..+.... ... ...... ..++.+...+.+ +. ....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~------~~~-~~~~~~-~i~~~l~~~~~~-~~----~~~~ 67 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGK------LAS-EVAAIP-EVRKALDERQRE-LA----KKPG 67 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHH------HHH-HhcccH-hHHHHHHHHHHH-Hh----hCCC
Confidence 4889999999999999999999999999998443322110 000 000000 001112222222 21 1456
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcC
Q 022042 166 WLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (303)
Q Consensus 166 ~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R 208 (303)
||+||...... + ....+++|||++|++++.+|+.+|
T Consensus 68 ~Vidg~~~~~~----~---~~~~~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 68 IVLEGRDIGTV----V---FPDADLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred EEEEeeeeeeE----E---cCCCCEEEEEECCHHHHHHHHHHH
Confidence 99998532110 1 124689999999999999999885
No 99
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.28 E-value=6.9e-11 Score=98.67 Aligned_cols=163 Identities=17% Similarity=0.187 Sum_probs=95.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChH-------HHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE-------IVVTMVKERL 156 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~-------~~~~~l~~~l 156 (303)
+.+++|+|++||||||+++.|+..++..+++.+++.... .++ .+..|....++ .+.......+
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~---------~~r-~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 72 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAK---------NID-KMSQGIPLTDEDRLPWLERLNDASYSLY 72 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHh---------HHH-HHhcCCCCCcccchHHHHHHHHHHHHHH
Confidence 347899999999999999999999998888877653211 011 11122211111 1111222111
Q ss_pred cCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhcc
Q 022042 157 SQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTK 236 (303)
Q Consensus 157 ~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~ 236 (303)
.. ...|+|+..+-. ......+.+.+ .+..+|||+++.+++.+|+.+|..|..
T Consensus 73 ~~---~~~g~iv~s~~~-~~~R~~~r~~~-~~~~~v~l~a~~~~l~~Rl~~R~~~~~----------------------- 124 (176)
T PRK09825 73 KK---NETGFIVCSSLK-KQYRDILRKSS-PNVHFLWLDGDYETILARMQRRAGHFM----------------------- 124 (176)
T ss_pred hc---CCCEEEEEEecC-HHHHHHHHhhC-CCEEEEEEeCCHHHHHHHHhcccCCCC-----------------------
Confidence 11 146777766532 22233333333 466899999999999999999963211
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 022042 237 RFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQ 293 (303)
Q Consensus 237 r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~ 293 (303)
..+.+...+..+ ++. ..-+..++.||++.+++++.+++...+..++..
T Consensus 125 ----~~~vl~~Q~~~~----e~~-~~~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 172 (176)
T PRK09825 125 ----PPDLLQSQFDAL----ERP-CADEHDIARIDVNHDIENVTEQCRQAVQAFRQA 172 (176)
T ss_pred ----CHHHHHHHHHHc----CCC-CCCcCCeEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence 122222111111 100 000113789999999999999999988877654
No 100
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=99.28 E-value=5.6e-10 Score=89.98 Aligned_cols=167 Identities=19% Similarity=0.235 Sum_probs=97.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh-CCceeehHHHHHHHHHcC--CcchHHHHHHHHcCCCcChHHHHHHH---HHHHc
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRAEIAAG--SENGKRAKEHMEKGQLVPDEIVVTMV---KERLS 157 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l-g~~~i~~d~l~~~~~~~~--~~~~~~i~~~~~~g~~~~~~~~~~~l---~~~l~ 157 (303)
+++++|+|.||+||||+++.+.+.+ .+.+++.++++.+..... -+..+.++ .+|.+....+. ..++.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~R-------klp~e~Q~~lq~~Aa~rI~ 76 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEMR-------KLPLENQRELQAEAAKRIA 76 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHHh-------cCCHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998 888899999987754321 11222221 12333322222 22222
Q ss_pred CCCCCCCcEEEcC----------CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCc
Q 022042 158 QPDSQENGWLLDG----------YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPET 227 (303)
Q Consensus 158 ~~~~~~~~~Vldg----------~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~ 227 (303)
+.. .-+|+|. +|-...+. +. ...||.++.|.++++.++.|..+.. .
T Consensus 77 ~~~---~~iivDtH~~IkTP~GylpgLP~~V--l~--~l~pd~ivllEaDp~~Il~RR~~D~---~-------------- 132 (189)
T COG2019 77 EMA---LEIIVDTHATIKTPAGYLPGLPSWV--LE--ELNPDVIVLLEADPEEILERRLRDS---R-------------- 132 (189)
T ss_pred Hhh---hceEEeccceecCCCccCCCCcHHH--HH--hcCCCEEEEEeCCHHHHHHHHhccc---c--------------
Confidence 221 2267774 12222222 22 2359999999999999887765431 0
Q ss_pred hHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcC-CCCHHHHHHHHHHHHH
Q 022042 228 DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNG-SVNKEDVFAQIDVALT 288 (303)
Q Consensus 228 ~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~-~~s~eev~~~I~~~l~ 288 (303)
..|..+..|.+..+.+..+--.-...-.++..+.+|.+ ++.+++-..+|...|+
T Consensus 133 -------r~Rd~es~e~i~eHqe~nR~aA~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~ 187 (189)
T COG2019 133 -------RDRDVESVEEIREHQEMNRAAAMAYAILLGATVKIVENHEGDPEEAAEEIVELLD 187 (189)
T ss_pred -------cccccccHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHh
Confidence 12334456666555443332222222333444555544 5788888888888775
No 101
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.27 E-value=2.6e-10 Score=95.35 Aligned_cols=161 Identities=15% Similarity=0.163 Sum_probs=84.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCc---eeehHHHHHHHHHcCCcc----hHHHHHHHHcCCCcC--------hHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLV---HIAAGDLLRAEIAAGSEN----GKRAKEHMEKGQLVP--------DEIVV 149 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~---~i~~d~l~~~~~~~~~~~----~~~i~~~~~~g~~~~--------~~~~~ 149 (303)
.+|+|+|++||||||+++.|+..++.. .+....+.+.....+... ...+......+.... ....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~- 80 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIP- 80 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccCh-
Confidence 378999999999999999999987532 110000000000000000 011111111221100 0001
Q ss_pred HHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchH
Q 022042 150 TMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDE 229 (303)
Q Consensus 150 ~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~ 229 (303)
..+...+. .+..+|+|+... ....+.+.. ....+|||+++.+++.+|+..|..
T Consensus 81 ~~i~~~~~----~g~~vv~~g~~~---~~~~~~~~~-~~~~~i~l~~~~~~~~~Rl~~R~~------------------- 133 (179)
T TIGR02322 81 AEIDQWLE----AGDVVVVNGSRA---VLPEARQRY-PNLLVVNITASPDVLAQRLAARGR------------------- 133 (179)
T ss_pred HHHHHHHh----cCCEEEEECCHH---HHHHHHHHC-CCcEEEEEECCHHHHHHHHHHcCC-------------------
Confidence 11222222 256688888532 122232222 234799999999999999998741
Q ss_pred HHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHH
Q 022042 230 IAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALT 288 (303)
Q Consensus 230 i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~ 288 (303)
...+.+.+|+..+..... ....+++|+++.+++++.++|.+.+.
T Consensus 134 ----------~~~~~~~~rl~~~~~~~~-----~~~~~~vi~~~~~~ee~~~~i~~~l~ 177 (179)
T TIGR02322 134 ----------ESREEIEERLARSARFAA-----APADVTTIDNSGSLEVAGETLLRLLR 177 (179)
T ss_pred ----------CCHHHHHHHHHHHhhccc-----ccCCEEEEeCCCCHHHHHHHHHHHHc
Confidence 113455555543221110 11234557888999999999998875
No 102
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.27 E-value=5e-11 Score=96.74 Aligned_cols=114 Identities=22% Similarity=0.246 Sum_probs=69.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcC---hHHHHHHHHHHHc-CCCC
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP---DEIVVTMVKERLS-QPDS 161 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~---~~~~~~~l~~~l~-~~~~ 161 (303)
+|+|+|+|||||||+|+.|++.++..+++.|.+....... .+..+.... .+.+...+..... ....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIA----------KMAAGIPLNDEDRWPWLQALTDALLAKLAS 70 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHH----------HHHcCCCCCccchhhHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999998876532100 011111111 0111111111111 1111
Q ss_pred CCCcEEEcCCCCCHHHHHHHHHhC-CCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 162 QENGWLLDGYPRSLSQATALKKYG-FQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 162 ~~~~~Vldg~p~~~~~~~~l~~~~-~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
.+..+|+|...........+.... ..+..+|||+++.+++.+|+.+|.
T Consensus 71 ~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~ 119 (150)
T cd02021 71 AGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARK 119 (150)
T ss_pred CCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcc
Confidence 256788886323334444444431 235579999999999999999985
No 103
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.25 E-value=3.8e-10 Score=97.91 Aligned_cols=40 Identities=33% Similarity=0.591 Sum_probs=36.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE 122 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~ 122 (303)
.+++|+|.|++||||||+++.|+++||+.+++.+.+++..
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~ 42 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAV 42 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHH
Confidence 3579999999999999999999999999999999987763
No 104
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.25 E-value=1e-10 Score=99.23 Aligned_cols=122 Identities=19% Similarity=0.215 Sum_probs=68.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc---eeehHHHHHHHHHc------C----Cc-------chHHHHHHHHcCC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV---HIAAGDLLRAEIAA------G----SE-------NGKRAKEHMEKGQ 141 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~---~i~~d~l~~~~~~~------~----~~-------~~~~i~~~~~~g~ 141 (303)
.+..+|+|.|++||||||+|+.|.+.|+.. .|+.|+++...-.. . .+ +.+.+. .+..|.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~-~L~~g~ 84 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLK-DLKQGK 84 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHH-HHHcCC
Confidence 345799999999999999999999999854 67777776532110 0 00 001111 122233
Q ss_pred CcChHHHHHHHHHHHcC--CCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 142 LVPDEIVVTMVKERLSQ--PDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 142 ~~~~~~~~~~l~~~l~~--~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
.+..-.+.-....+..+ .......+|++|+-...+ +.+.+ ..|+.||++++.++++.|...|.
T Consensus 85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~---~~d~kIfvdtd~D~RliRri~RD 149 (218)
T COG0572 85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRD---LMDLKIFVDTDADVRLIRRIKRD 149 (218)
T ss_pred cccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHh---hcCEEEEEeCCccHHHHHHHHHH
Confidence 22211111111111100 111246688899522111 11222 36899999999999999988875
No 105
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.23 E-value=1.2e-10 Score=96.87 Aligned_cols=114 Identities=20% Similarity=0.124 Sum_probs=63.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh---CCceeehHH-HHHHHHHcC--CcchHHHHHHHHcCCCcChHHHHHHHHHHHc
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY---GLVHIAAGD-LLRAEIAAG--SENGKRAKEHMEKGQLVPDEIVVTMVKERLS 157 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d~-l~~~~~~~~--~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~ 157 (303)
|+.|+++|+|||||||+|+.|++.+ +...++... ..+-.+... ....+..++.+ .+-....+..+++
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~-------~ks~~rlldSalk 73 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESF-------LKSVERLLDSALK 73 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHH-------HHHHHHHHHHHhc
Confidence 4689999999999999999999988 333333322 111111100 00111111111 1122234444443
Q ss_pred CCCCCCCcEEEcCCC---CCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 158 QPDSQENGWLLDGYP---RSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 158 ~~~~~~~~~Vldg~p---~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
+.-+|+|... .-..|..........+.++||+.+|.++|++|-..|.
T Consensus 74 -----n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erg 123 (261)
T COG4088 74 -----NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERG 123 (261)
T ss_pred -----ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCC
Confidence 2345666521 1122332233334467899999999999999986664
No 106
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.23 E-value=3.7e-10 Score=97.33 Aligned_cols=38 Identities=32% Similarity=0.529 Sum_probs=35.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE 122 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~ 122 (303)
++|.|.|++||||||+++.|+++||+.+++.+++++..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 68999999999999999999999999999999887654
No 107
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.22 E-value=3.5e-10 Score=93.20 Aligned_cols=180 Identities=17% Similarity=0.233 Sum_probs=100.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~ 162 (303)
++++|+|+||+|+||||+++.|-+..+ ..+|+....|.- +++...| .+...+..+.+..++. +...-
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~SVS~TTR~p-R~gEv~G-------~dY~Fvs~~EF~~~i~----~~~fL 69 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK-LRFSVSATTRKP-RPGEVDG-------VDYFFVTEEEFEELIE----RDEFL 69 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC-eEEEEEeccCCC-CCCCcCC-------ceeEeCCHHHHHHHHh----cCCcE
Confidence 578999999999999999999999884 445554444431 2222222 0112223333333322 11000
Q ss_pred CCcEEEcC-CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCc
Q 022042 163 ENGWLLDG-YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDT 241 (303)
Q Consensus 163 ~~~~Vldg-~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~ 241 (303)
...-+..+ |......++.....| ..++|+++.+-.++ +.+.. ...+.+...||+.+++..||..|..|.
T Consensus 70 E~a~~~gnyYGT~~~~ve~~~~~G----~~vildId~qGa~q-vk~~~-----p~~v~IFi~pPs~eeL~~RL~~Rgtds 139 (191)
T COG0194 70 EWAEYHGNYYGTSREPVEQALAEG----KDVILDIDVQGALQ-VKKKM-----PNAVSIFILPPSLEELERRLKGRGTDS 139 (191)
T ss_pred EEEEEcCCcccCcHHHHHHHHhcC----CeEEEEEehHHHHH-HHHhC-----CCeEEEEEcCCCHHHHHHHHHccCCCC
Confidence 11112222 222333333333333 23444444432221 11111 134566677888888888888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042 242 EEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL 290 (303)
Q Consensus 242 ~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~ 290 (303)
++.+.+|+...+.+...... |+ ++|. |.+++..++++..++...
T Consensus 140 ~e~I~~Rl~~a~~Ei~~~~~-fd---yviv-Ndd~e~a~~~l~~ii~ae 183 (191)
T COG0194 140 EEVIARRLENAKKEISHADE-FD---YVIV-NDDLEKALEELKSIILAE 183 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CC---EEEE-CccHHHHHHHHHHHHHHH
Confidence 99999999998887665443 32 2232 357888888888887654
No 108
>PRK06547 hypothetical protein; Provisional
Probab=99.22 E-value=4.9e-11 Score=99.11 Aligned_cols=124 Identities=16% Similarity=0.176 Sum_probs=70.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHH-HHHcCCCcChHHHHHHHHHHHcC-
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKE-HMEKGQLVPDEIVVTMVKERLSQ- 158 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~-~~~~g~~~~~~~~~~~l~~~l~~- 158 (303)
...+++|+|.|++||||||+++.|++.+++.++++|+++...- .-......+.+ ++..|....-. ..........
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~-~~~~~~~~l~~~~l~~g~~~~~~--yd~~~~~~~~~ 88 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWH-GLAAASEHVAEAVLDEGRPGRWR--WDWANNRPGDW 88 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccc-cCChHHHHHHHHHHhCCCCceec--CCCCCCCCCCc
Confidence 3557899999999999999999999999999999998874310 00111111222 22222211000 0000000000
Q ss_pred -CCCCCCcEEEcCCCCCHHHH-HHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 159 -PDSQENGWLLDGYPRSLSQA-TALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 159 -~~~~~~~~Vldg~p~~~~~~-~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
.......+|++|......+. ..+.+. ..-++|||++|.+++++|+.+|.
T Consensus 89 ~~l~~~~vVIvEG~~al~~~~r~~~d~~--g~v~~I~ld~~~~vr~~R~~~Rd 139 (172)
T PRK06547 89 VSVEPGRRLIIEGVGSLTAANVALASLL--GEVLTVWLDGPEALRKERALARD 139 (172)
T ss_pred EEeCCCCeEEEEehhhccHHHHHHhccC--CCEEEEEEECCHHHHHHHHHhcC
Confidence 01123568889842222222 122211 12389999999999999999985
No 109
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.22 E-value=1e-09 Score=93.78 Aligned_cols=167 Identities=20% Similarity=0.272 Sum_probs=87.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCC----c----chHHHHHHHHcCCCcC-----hHH-
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGS----E----NGKRAKEHMEKGQLVP-----DEI- 147 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~----~----~~~~i~~~~~~g~~~~-----~~~- 147 (303)
+.+.+|+|.|++||||||+++.|++.++..++......++. ..+. + ....+.+....+..+. +..
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p-~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 81 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAP-RPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYY 81 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCC-CCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccc
Confidence 34578999999999999999999998753222222111110 0000 0 0122222222222110 000
Q ss_pred --HHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCC
Q 022042 148 --VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPP 225 (303)
Q Consensus 148 --~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p 225 (303)
....+...+.. +..+|+|.-+.. ...+.+....+-.++++.++.+++.+|+..|.
T Consensus 82 ~~~~~~i~~~l~~----g~~vi~dl~~~g---~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~---------------- 138 (205)
T PRK00300 82 GTPRSPVEEALAA----GKDVLLEIDWQG---ARQVKKKMPDAVSIFILPPSLEELERRLRGRG---------------- 138 (205)
T ss_pred cCcHHHHHHHHHc----CCeEEEeCCHHH---HHHHHHhCCCcEEEEEECcCHHHHHHHHHhcC----------------
Confidence 01122222222 444566643222 22233222222223334566777788877764
Q ss_pred CchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042 226 ETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL 290 (303)
Q Consensus 226 ~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~ 290 (303)
.+.++.+++|+..+....... ..|+ ++|.+ .+++++.+++..++...
T Consensus 139 -------------~~~~~~i~~rl~~~~~~~~~~-~~~d---~vi~n-~~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 139 -------------TDSEEVIARRLAKAREEIAHA-SEYD---YVIVN-DDLDTALEELKAIIRAE 185 (205)
T ss_pred -------------CCCHHHHHHHHHHHHHHHHhH-HhCC---EEEEC-CCHHHHHHHHHHHHHHH
Confidence 355778888888877655432 2332 22333 48999999999999876
No 110
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.21 E-value=4.9e-12 Score=98.72 Aligned_cols=108 Identities=24% Similarity=0.413 Sum_probs=60.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHc--CCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA--GSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE 163 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~--~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~ 163 (303)
+|+|+|+|||||||+|+.|+++||++++++|+++...... .......... ..+.+...+..... ....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~--~~~~ 70 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIERDDDEREYIDA--------DIDLLDDILEQLQN--KPDN 70 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHGCTTCCHHHHH--------HHHHHHHHHHHHHE--TTT-
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccccCcchhhHHHH--------HHHHHHHHHHhhhc--cCCC
Confidence 5899999999999999999999999999999954211100 0000000000 01112222222222 2225
Q ss_pred CcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcC
Q 022042 164 NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (303)
Q Consensus 164 ~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R 208 (303)
..||+||.-. ......+. ..+.+||++++.+++.+|+.+|
T Consensus 71 ~~~ii~g~~~-~~~~~~~~----~~~~~i~l~~~~~~~~~~~~~R 110 (121)
T PF13207_consen 71 DNWIIDGSYE-SEMEIRLP----EFDHVIYLDAPDEECRERRLKR 110 (121)
T ss_dssp -EEEEECCSC-HCCHSCCH----HGGCEEEEEEEEHHHHHHHHHH
T ss_pred CeEEEeCCCc-cchhhhhh----cCCEEEEEECCCHHHHHHHHHH
Confidence 6799999311 10000011 2467999999998665555554
No 111
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.21 E-value=2.9e-10 Score=97.48 Aligned_cols=39 Identities=31% Similarity=0.403 Sum_probs=32.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC---CceeehHHHH
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLL 119 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg---~~~i~~d~l~ 119 (303)
.+++.+|+|.|++||||||+++.|+..++ ..+++.|+.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~ 44 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY 44 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence 45668999999999999999999999875 4567777654
No 112
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.20 E-value=5.9e-11 Score=119.25 Aligned_cols=38 Identities=21% Similarity=0.410 Sum_probs=35.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE 122 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~ 122 (303)
++|+|.|||||||||+|+.|+++||+.+++.+.+++..
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~ 39 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC 39 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence 48999999999999999999999999999999888764
No 113
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.20 E-value=1.6e-10 Score=95.30 Aligned_cols=156 Identities=13% Similarity=0.091 Sum_probs=84.4
Q ss_pred EcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChH---HHHHHHHHHHcCC-CCCCCc
Q 022042 90 SGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE---IVVTMVKERLSQP-DSQENG 165 (303)
Q Consensus 90 ~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~---~~~~~l~~~l~~~-~~~~~~ 165 (303)
+|++||||||+++.|++.+|..+++.|.+....... ....|....+. .+...+.+..... ...+..
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIE----------KMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVS 70 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhc----------cccCCCCCChhhHHHHHHHHHHHHHHHHHcCCce
Confidence 599999999999999999999999887653211000 00111111110 1111111111110 111334
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHH
Q 022042 166 WLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKV 245 (303)
Q Consensus 166 ~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~ 245 (303)
+|+..+. .......+.+ ...+..+|||++|.+++.+|+.+|..+. ...+.+
T Consensus 71 viv~s~~-~~~~r~~~~~-~~~~~~~v~l~a~~~~l~~Rl~~R~~~~---------------------------a~~~vl 121 (163)
T PRK11545 71 LIVCSAL-KKHYRDLLRE-GNPNLSFIYLKGDFDVIESRLKARKGHF---------------------------FKTQML 121 (163)
T ss_pred EEEEecc-hHHHHHHHHc-cCCCEEEEEEECCHHHHHHHHHhccCCC---------------------------CCHHHH
Confidence 5554442 2222333333 3346689999999999999999996221 012222
Q ss_pred HHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHH
Q 022042 246 KLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTN 289 (303)
Q Consensus 246 ~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~ 289 (303)
...+. .+++.... +..++.||+..+++++.+.+...+.+
T Consensus 122 ~~Q~~----~~ep~~~~-e~~~~~id~~~~~~~~~~~~~~~~~~ 160 (163)
T PRK11545 122 VTQFE----TLQEPGAD-ETDVLVVDIDQPLEGVVASTIEVIKK 160 (163)
T ss_pred HHHHH----HcCCCCCC-CCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 21111 11111000 01367899999999999999888855
No 114
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=99.19 E-value=9.6e-10 Score=95.21 Aligned_cols=128 Identities=19% Similarity=0.260 Sum_probs=74.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceee---hHHHHHHHHHc-------CCcch---HHHHHHHHcC-CCcCh---
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA---AGDLLRAEIAA-------GSENG---KRAKEHMEKG-QLVPD--- 145 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~---~d~l~~~~~~~-------~~~~~---~~i~~~~~~g-~~~~~--- 145 (303)
..++|++.|+.|||||++|+.||+++|+.++. +|+++-...-. .-+.. -.++.+..+- ..+..
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~Q 149 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAMQ 149 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHHH
Confidence 45799999999999999999999999987764 44332211000 00000 0122121111 00000
Q ss_pred -HHH---HHHHHHHHcCCCCCCCcEEEcCCCC-CHHHHHHHHH---------------------hCCCCcEEEEEEcCHH
Q 022042 146 -EIV---VTMVKERLSQPDSQENGWLLDGYPR-SLSQATALKK---------------------YGFQPDLFILLEVPED 199 (303)
Q Consensus 146 -~~~---~~~l~~~l~~~~~~~~~~Vldg~p~-~~~~~~~l~~---------------------~~~~pd~vI~L~~~~e 199 (303)
.++ .....+++......++|+|++.-|. ....++.+.. ....|.+|||||+|..
T Consensus 150 ~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~Pv~ 229 (393)
T KOG3877|consen 150 DRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTPVN 229 (393)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCCcH
Confidence 011 1112344445555689999997553 2222332222 1257999999999999
Q ss_pred HHHHHHhcCCC
Q 022042 200 TLVERVVGRRL 210 (303)
Q Consensus 200 ~~~~Rl~~R~~ 210 (303)
.+++++++|+.
T Consensus 230 ~v~~~Ik~rg~ 240 (393)
T KOG3877|consen 230 KVLENIKRRGN 240 (393)
T ss_pred HHHHHHHhcCC
Confidence 99999999964
No 115
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.19 E-value=1.9e-10 Score=96.11 Aligned_cols=162 Identities=19% Similarity=0.212 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcc--------hHHHHHHHHcCCCcCh-----H---HH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSEN--------GKRAKEHMEKGQLVPD-----E---IV 148 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~--------~~~i~~~~~~g~~~~~-----~---~~ 148 (303)
.+|+|.|++||||||+++.|++.++..++......++.. .+... ...+.+.+..+..+.. . ..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 80 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPR-PGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP 80 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCC-CCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence 479999999999999999999977544443322222110 01000 1122222333322211 0 01
Q ss_pred HHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCch
Q 022042 149 VTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETD 228 (303)
Q Consensus 149 ~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~ 228 (303)
...+...+.+ +..+|+|.- ......+.+....+..++++..+.+.+.+|+..|.
T Consensus 81 ~~~i~~~~~~----g~~vi~d~~---~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~------------------- 134 (180)
T TIGR03263 81 KSPVEEALAA----GKDVLLEID---VQGARQVKKKFPDAVSIFILPPSLEELERRLRKRG------------------- 134 (180)
T ss_pred HHHHHHHHHC----CCeEEEECC---HHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcC-------------------
Confidence 1223333332 556777742 22223333333233345555667788888887764
Q ss_pred HHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHH
Q 022042 229 EIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALT 288 (303)
Q Consensus 229 ~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~ 288 (303)
++.++.+++|+..+..+.+. ... .-++|.++ ++++..+++.+.+.
T Consensus 135 ----------~~~~~~i~~rl~~~~~~~~~-~~~---~d~~i~n~-~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 135 ----------TDSEEVIERRLAKAKKEIAH-ADE---FDYVIVND-DLEKAVEELKSIIL 179 (180)
T ss_pred ----------CCCHHHHHHHHHHHHHHHhc-ccc---CcEEEECC-CHHHHHHHHHHHHh
Confidence 34466788888776544321 111 23445554 78999988887764
No 116
>PRK12338 hypothetical protein; Provisional
Probab=99.19 E-value=1.5e-09 Score=97.93 Aligned_cols=44 Identities=23% Similarity=0.407 Sum_probs=39.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHc
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA 125 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~ 125 (303)
++|.+|+|.|+|||||||+|+.|++++|+.++..++.+++.+..
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~ 45 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRG 45 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcC
Confidence 45789999999999999999999999999999788888886654
No 117
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.17 E-value=5.5e-10 Score=111.39 Aligned_cols=39 Identities=36% Similarity=0.468 Sum_probs=36.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE 122 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~ 122 (303)
.++|.|.||+||||||+++.|+++||+.+++.+.+++..
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 468999999999999999999999999999999999876
No 118
>PRK06696 uridine kinase; Validated
Probab=99.15 E-value=3e-10 Score=98.55 Aligned_cols=42 Identities=29% Similarity=0.431 Sum_probs=34.0
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCc--eeehHHHHHH
Q 022042 80 ATVEPLKIMISGAPASGKGTQCELIKEKY---GLV--HIAAGDLLRA 121 (303)
Q Consensus 80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l---g~~--~i~~d~l~~~ 121 (303)
....+++|+|.|++||||||+|+.|++.+ |.. ++++|+++..
T Consensus 18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 18 NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 34568899999999999999999999999 544 4557877643
No 119
>PTZ00301 uridine kinase; Provisional
Probab=99.14 E-value=2.9e-10 Score=97.41 Aligned_cols=37 Identities=32% Similarity=0.293 Sum_probs=29.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh----C---CceeehHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY----G---LVHIAAGDLLR 120 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l----g---~~~i~~d~l~~ 120 (303)
-++|+|.|++||||||+|+.|++++ | ...++.|++.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~ 46 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR 46 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence 3689999999999999999998876 2 23566776654
No 120
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.12 E-value=9.3e-10 Score=93.57 Aligned_cols=35 Identities=34% Similarity=0.399 Sum_probs=29.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CCceeehHHHHH
Q 022042 86 KIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLR 120 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d~l~~ 120 (303)
+|+|+|++||||||+++.|+..+ +..+++.|++..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 47899999999999999999987 367788887653
No 121
>PRK07667 uridine kinase; Provisional
Probab=99.08 E-value=2e-09 Score=91.20 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=35.9
Q ss_pred cccCCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHHHHHH
Q 022042 79 SATVEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAEI 123 (303)
Q Consensus 79 ~~~~~~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~~~~~ 123 (303)
..+....+|+|.|++||||||+|+.|++.++ ...++.|+++....
T Consensus 12 ~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~ 61 (193)
T PRK07667 12 KHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERN 61 (193)
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhh
Confidence 3344557999999999999999999999873 45888998776543
No 122
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=99.07 E-value=1e-08 Score=91.61 Aligned_cols=43 Identities=26% Similarity=0.436 Sum_probs=34.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA 124 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~ 124 (303)
+.|++|+|.|++||||||+|..|+++||+..+-..|.+++.+.
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R 132 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMR 132 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHH
Confidence 5689999999999999999999999999974433555554444
No 123
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.05 E-value=1.1e-08 Score=87.13 Aligned_cols=108 Identities=11% Similarity=0.107 Sum_probs=59.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcCh--HHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD--EIVVTMVKE 154 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l-----g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~--~~~~~~l~~ 154 (303)
.++.+|+|+|.+||||||+++.|+..+ +..+++.|++..... .. . + ..+. ......+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~-~~--~----------~-~~~~~~~~~~~~l~~ 87 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLC-SD--L----------G-FSDADRKENIRRVGE 87 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhh-hc--C----------C-cCcccHHHHHHHHHH
Confidence 467799999999999999999999986 245565555442211 10 0 0 0010 111111111
Q ss_pred HHcCCCCCCCcEEEcCCCC-CHHHHHHHHHhCCCCcE-EEEEEcCHHHHHHH
Q 022042 155 RLSQPDSQENGWLLDGYPR-SLSQATALKKYGFQPDL-FILLEVPEDTLVER 204 (303)
Q Consensus 155 ~l~~~~~~~~~~Vldg~p~-~~~~~~~l~~~~~~pd~-vI~L~~~~e~~~~R 204 (303)
........+ ..|+..|.. .....+.+.+......+ +|||++|.+++.+|
T Consensus 88 ~a~~~~~~G-~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 88 VAKLMVDAG-LVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEAR 138 (198)
T ss_pred HHHHHhhCC-CEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhc
Confidence 111111123 344555543 23444445443322234 79999999999999
No 124
>PLN02348 phosphoribulokinase
Probab=99.03 E-value=3.1e-09 Score=97.96 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=30.6
Q ss_pred cchhhhhhcc--cCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 71 SANFQVLASA--TVEPLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 71 ~~~~~~~~~~--~~~~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
|...+..+.. ..++.+|+|.|++||||||+++.|++.||
T Consensus 34 ~~~~~~~~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 34 PAASSVVVALAADDGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred chhHHHHHhhccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3344443333 35778999999999999999999999986
No 125
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.02 E-value=1.4e-08 Score=91.00 Aligned_cols=96 Identities=16% Similarity=0.271 Sum_probs=56.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCC-CC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP-DS 161 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~-~~ 161 (303)
.+.+|+|+|++||||||+++.|. ..|+..++-- +...+..+ .+.+... ..
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~~---------------------------~~~L~~~l-~~~~~~~~~~ 55 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDNL---------------------------PPSLLPKL-VELLAQSGGI 55 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH-HcCCeEECCc---------------------------CHHHHHHH-HHHHHhcCCC
Confidence 34589999999999999999996 4687766321 11111111 1111111 11
Q ss_pred CCCcEEEcCCCC-----CHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcC
Q 022042 162 QENGWLLDGYPR-----SLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (303)
Q Consensus 162 ~~~~~Vldg~p~-----~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R 208 (303)
..-.+++|-... .......+.+.+ ....+|||+++.+++++|+..+
T Consensus 56 ~~~av~iD~r~~~~~~~~~~~~~~L~~~g-~~~~iI~L~a~~e~L~~Rl~~~ 106 (288)
T PRK05416 56 RKVAVVIDVRSRPFFDDLPEALDELRERG-IDVRVLFLDASDEVLIRRYSET 106 (288)
T ss_pred CCeEEEEccCchhhHHHHHHHHHHHHHcC-CcEEEEEEECCHHHHHHHHhhc
Confidence 123466665221 112333344443 3346899999999999999753
No 126
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.01 E-value=1.4e-09 Score=91.32 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=32.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-CCceeehHHHHHH
Q 022042 86 KIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRA 121 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l-g~~~i~~d~l~~~ 121 (303)
+|+|.|++||||||+|+.|++.+ +..+|++|+++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~ 37 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP 37 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence 47899999999999999999999 6889999988654
No 127
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=99.00 E-value=6.3e-09 Score=105.33 Aligned_cols=40 Identities=28% Similarity=0.542 Sum_probs=37.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE 122 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~ 122 (303)
..++|+|.||+||||||+|+.||++||+.+++++.++|..
T Consensus 33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 3469999999999999999999999999999999999875
No 128
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=99.00 E-value=1.4e-09 Score=85.32 Aligned_cols=108 Identities=20% Similarity=0.288 Sum_probs=53.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHH-cCCcchHHHHHHHHcCCCcChHH---HHHHHHHHHcCCCCC
Q 022042 87 IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA-AGSENGKRAKEHMEKGQLVPDEI---VVTMVKERLSQPDSQ 162 (303)
Q Consensus 87 I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~-~~~~~~~~i~~~~~~g~~~~~~~---~~~~l~~~l~~~~~~ 162 (303)
|+|.|++||||||+|+.|+++++. .+..... .+......-............+. +...+..... ....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 72 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGD-------IIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIR-RMNK 72 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCH-------HHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHH-HHTT
T ss_pred CEEECCCCCCHHHHHHHHHHHHCc-------HHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhc-cccc
Confidence 789999999999999999999821 2211111 11111100000011112222222 2222222211 1122
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhCCCCcEE-EEEEcCHHHHHHHHhcCC
Q 022042 163 ENGWLLDGYPRSLSQATALKKYGFQPDLF-ILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 163 ~~~~Vldg~p~~~~~~~~l~~~~~~pd~v-I~L~~~~e~~~~Rl~~R~ 209 (303)
...+|+|+...... ........ |||+||++++.+|+.+|.
T Consensus 73 ~~~~iid~~~~~~~-------~~~~~~~~~i~L~~~~e~~~~R~~~R~ 113 (129)
T PF13238_consen 73 GRNIIIDGILSNLE-------LERLFDIKFIFLDCSPEELRKRLKKRG 113 (129)
T ss_dssp TSCEEEEESSEEEC-------ETTEEEESSEEEE--HHHHHHHHHCTT
T ss_pred CCcEEEecccchhc-------ccccceeeEEEEECCHHHHHHHHHhCC
Confidence 56789998532110 00012223 999999999999999986
No 129
>PHA03132 thymidine kinase; Provisional
Probab=99.00 E-value=2.3e-08 Score=96.63 Aligned_cols=127 Identities=17% Similarity=0.172 Sum_probs=67.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCC---CcChHHHH----------
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ---LVPDEIVV---------- 149 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~---~~~~~~~~---------- 149 (303)
..++|+|+|+.||||||+++.|++.+|..++-..+=......-.+..+..+.+.+..+. ..+...+.
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~Pf 335 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFATPF 335 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHH
Confidence 46899999999999999999999998544432211000000000123444444444321 11111110
Q ss_pred HHHH---HHH-------cCCCCCCCcEEEcCCCCCH-H---------------H-HHHHHHhC-CCCcEEEEEEcCHHHH
Q 022042 150 TMVK---ERL-------SQPDSQENGWLLDGYPRSL-S---------------Q-ATALKKYG-FQPDLFILLEVPEDTL 201 (303)
Q Consensus 150 ~~l~---~~l-------~~~~~~~~~~Vldg~p~~~-~---------------~-~~~l~~~~-~~pd~vI~L~~~~e~~ 201 (303)
..+. +.+ ......+..+|+|.|+... . . ...+.... ..||++|||+++++++
T Consensus 336 l~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~pe~a 415 (580)
T PHA03132 336 RALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNSEEN 415 (580)
T ss_pred HHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCHHHH
Confidence 0001 111 1111234567778754211 1 1 12222222 3589999999999999
Q ss_pred HHHHhcCC
Q 022042 202 VERVVGRR 209 (303)
Q Consensus 202 ~~Rl~~R~ 209 (303)
++|+.+|+
T Consensus 416 lkRIkkRg 423 (580)
T PHA03132 416 LRRVKKRG 423 (580)
T ss_pred HHHHHhcC
Confidence 99999885
No 130
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.98 E-value=8.3e-09 Score=85.94 Aligned_cols=109 Identities=15% Similarity=0.191 Sum_probs=60.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHH--HHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVV--TMVKE 154 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~--~~l~~ 154 (303)
..+.+|+|+|++||||||+++.|+..+ | +.+++.|.+- +.+..+..+...-+ ...+. ..+..
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~-~~~~~~~~~~~~~r----------~~~~~~~~~~a~ 70 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR-TNLSKGLGFSKEDR----------DTNIRRIGFVAN 70 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH-HHHhcCCCCChhhH----------HHHHHHHHHHHH
Confidence 346799999999999999999999987 2 4567776553 32221111100000 00000 11111
Q ss_pred HHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHH
Q 022042 155 RLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERV 205 (303)
Q Consensus 155 ~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl 205 (303)
.+.. .+..+++|+.-......+.+.... ..-.+|||++|.+++.+|.
T Consensus 71 ~~~~---~g~~vi~~~~~~~~~~~~~l~~~~-~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 71 LLTR---HGVIVLVSAISPYRETREEVRANI-GNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred HHHh---CCCEEEEecCCCCHHHHHHHHhhc-CCeEEEEEcCCHHHHHHhC
Confidence 1211 244566665322233334444433 2346999999999999994
No 131
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.97 E-value=3.7e-08 Score=82.72 Aligned_cols=111 Identities=10% Similarity=0.069 Sum_probs=62.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERL 156 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l 156 (303)
..+.+|+|+|++||||||+++.|+..+ | ..+++.|.+- ..+..+..+...- .......+....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r-~~l~~~~~~~~~~-----------~~~~~~~~~~~~ 83 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR-HGLNKDLGFSEED-----------RKENIRRIGEVA 83 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH-hhhccccCCCHHH-----------HHHHHHHHHHHH
Confidence 456899999999999999999999987 3 3455555433 2221111111000 000111111111
Q ss_pred cCCCCCCCcEEEcCCCCCHHHHHHHHHhCC-CCcEEEEEEcCHHHHHHH
Q 022042 157 SQPDSQENGWLLDGYPRSLSQATALKKYGF-QPDLFILLEVPEDTLVER 204 (303)
Q Consensus 157 ~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~-~pd~vI~L~~~~e~~~~R 204 (303)
......+..+|+|..-....+...+..... .+.++|||++|.+++.+|
T Consensus 84 ~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 84 KLFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred HHHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh
Confidence 112223667788863233444444544321 245789999999999998
No 132
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.96 E-value=8.2e-09 Score=84.19 Aligned_cols=114 Identities=15% Similarity=0.167 Sum_probs=62.7
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCcee-ehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHH
Q 022042 80 ATVEPLKIMISGAPASGKGTQCELIKEKY---GLVHI-AAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKER 155 (303)
Q Consensus 80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l---g~~~i-~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~ 155 (303)
...++.+|+++|.+||||||+|..|.++| |+..+ =-+|-+|.-+..+-.+.+. |....-.....
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~e------------dR~eniRRvae 86 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSRE------------DRIENIRRVAE 86 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChH------------HHHHHHHHHHH
Confidence 34567899999999999999999999988 54332 2235555544332222111 11100000011
Q ss_pred HcCCCCCCCcEEEcCCCCCHHHHHHHHH--hCCCCcEEEEEEcCHHHHHHHH
Q 022042 156 LSQPDSQENGWLLDGYPRSLSQATALKK--YGFQPDLFILLEVPEDTLVERV 205 (303)
Q Consensus 156 l~~~~~~~~~~Vldg~p~~~~~~~~l~~--~~~~pd~vI~L~~~~e~~~~Rl 205 (303)
+.......+.+++..|-........+.. .+....+-||++||.++|.+|=
T Consensus 87 vAkll~daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RD 138 (197)
T COG0529 87 VAKLLADAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRD 138 (197)
T ss_pred HHHHHHHCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcC
Confidence 1111111455677765333332222222 2223457899999999999884
No 133
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.96 E-value=7.2e-09 Score=101.22 Aligned_cols=111 Identities=12% Similarity=0.133 Sum_probs=63.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCC------ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHH
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGL------VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKE 154 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~------~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~ 154 (303)
.+++.+|+|+|.+||||||+++.|++.++. .+++.|.+ +..+..+..+...-++ .....+..
T Consensus 389 ~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v-r~~l~ge~~f~~~er~-----------~~~~~l~~ 456 (568)
T PRK05537 389 HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV-RKHLSSELGFSKEDRD-----------LNILRIGF 456 (568)
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH-HHhccCCCCCCHHHHH-----------HHHHHHHH
Confidence 345679999999999999999999999985 77777655 4433222111111111 11111111
Q ss_pred HHcCCCCCCCcEEEcC-CCCCH--H-HHHHHHHhCCCCcEEEEEEcCHHHHHHHH
Q 022042 155 RLSQPDSQENGWLLDG-YPRSL--S-QATALKKYGFQPDLFILLEVPEDTLVERV 205 (303)
Q Consensus 155 ~l~~~~~~~~~~Vldg-~p~~~--~-~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl 205 (303)
........+.++|+|. +|... . ....+.+.+ ..++|||++|.+++.+|.
T Consensus 457 ~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g--~fivV~L~~p~e~l~~R~ 509 (568)
T PRK05537 457 VASEITKNGGIAICAPIAPYRATRREVREMIEAYG--GFIEVHVATPLEVCEQRD 509 (568)
T ss_pred HHHHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcC--CEEEEEEcCCHHHHHHhc
Confidence 1111112366777775 44321 1 122232222 225899999999999996
No 134
>PRK07429 phosphoribulokinase; Provisional
Probab=98.92 E-value=2e-08 Score=91.64 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=33.7
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHhC---CceeehHHHH
Q 022042 80 ATVEPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLL 119 (303)
Q Consensus 80 ~~~~~~~I~I~G~pGSGKSTla~~La~~lg---~~~i~~d~l~ 119 (303)
...++.+|+|+|++||||||+++.|++.++ ..++..|++.
T Consensus 4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 345678999999999999999999999987 4567777764
No 135
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.91 E-value=1.2e-08 Score=84.62 Aligned_cols=122 Identities=15% Similarity=0.182 Sum_probs=66.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC--CceeehHHHHHHHHHcCC--cchHHHHHHHHcCCCcC--hHHHHHHHHHHHcC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYG--LVHIAAGDLLRAEIAAGS--ENGKRAKEHMEKGQLVP--DEIVVTMVKERLSQ 158 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg--~~~i~~d~l~~~~~~~~~--~~~~~i~~~~~~g~~~~--~~~~~~~l~~~l~~ 158 (303)
.+|+|.|++.|||||+|+.|.+.+. +.++++|.++........ ..+-. +-..+.... ...+...+...+..
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~iaa 78 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLE---PAGDRPDGGPLFRRLYAAMHAAIAA 78 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEE---EETTSEEE-HHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCcccc---ccccCCchhHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999985 467888888774322100 00000 000000000 00111222222222
Q ss_pred CCCCCCcEEEcCCCCCHHH-HHHHHH-hCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 159 PDSQENGWLLDGYPRSLSQ-ATALKK-YGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 159 ~~~~~~~~Vldg~p~~~~~-~~~l~~-~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
....+..+|+|+......+ .+.|++ ....+-++|-+.||.+++.+|-..|.
T Consensus 79 ~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~Rg 131 (174)
T PF07931_consen 79 MARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARG 131 (174)
T ss_dssp HHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHT
T ss_pred HHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcC
Confidence 2223778999975444443 444533 34567789999999999999998886
No 136
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.90 E-value=3.7e-08 Score=87.57 Aligned_cols=112 Identities=23% Similarity=0.226 Sum_probs=58.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQ 158 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~ 158 (303)
|++|+|+|.|||||||+|+.|++.+ + ..+++.+.+. +.... +...-.+... ...+...+...+..
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~~~~-y~~~~~Ek~~------R~~l~s~v~r~ls~ 70 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---IDRND-YADSKKEKEA------RGSLKSAVERALSK 70 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----TTSS-S--GGGHHHH------HHHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cchhh-hhchhhhHHH------HHHHHHHHHHhhcc
Confidence 4689999999999999999999976 2 3456544443 11111 1100000000 11233334444433
Q ss_pred CCCCCCcEEEcCCCCC---HHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 159 PDSQENGWLLDGYPRS---LSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 159 ~~~~~~~~Vldg~p~~---~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
...+|+|+--.. ..+.-.+.+......++||++++.+.+++|=.+|.
T Consensus 71 ----~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~ 120 (270)
T PF08433_consen 71 ----DTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRP 120 (270)
T ss_dssp -----SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT
T ss_pred ----CeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccC
Confidence 467888973221 22232344445567789999999999999998885
No 137
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.89 E-value=1.2e-08 Score=93.20 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=29.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC------CceeehHHHHH
Q 022042 87 IMISGAPASGKGTQCELIKEKYG------LVHIAAGDLLR 120 (303)
Q Consensus 87 I~I~G~pGSGKSTla~~La~~lg------~~~i~~d~l~~ 120 (303)
++|+|+|||||||+++.|++.+. +.+++.|+++.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 67999999999999999998875 34889998874
No 138
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.87 E-value=1e-08 Score=86.07 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
+..|+|+||+||||+|++++|.+.++
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 45789999999999999999999875
No 139
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.86 E-value=3.6e-07 Score=85.99 Aligned_cols=42 Identities=24% Similarity=0.502 Sum_probs=33.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEI 123 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~ 123 (303)
.+|.+|+|.|++|+||||++..|+.++|+.++-..|.+++.+
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~l 294 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVL 294 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHH
Confidence 468999999999999999999999999998553334444433
No 140
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.86 E-value=2.1e-08 Score=96.55 Aligned_cols=102 Identities=18% Similarity=0.217 Sum_probs=73.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~ 160 (303)
...+.+|++.|+|||||||+|+.+++.+|+.+|+.|.+-. .+.......+.+..
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------------------~~~~~~~a~~~L~~-- 419 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------------------TQNCLTACERALDQ-- 419 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------------------HHHHHHHHHHHHhC--
Confidence 3467899999999999999999999999999999987621 01122333444433
Q ss_pred CCCCcEEEcCCCCCHHHHHHH---HHhCCCCcEEEEEEcCHHHHHHHHhcCCC
Q 022042 161 SQENGWLLDGYPRSLSQATAL---KKYGFQPDLFILLEVPEDTLVERVVGRRL 210 (303)
Q Consensus 161 ~~~~~~Vldg~p~~~~~~~~l---~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~ 210 (303)
+..+|+|.--....+...| .+....+-.+||+++|.+++.+|...|..
T Consensus 420 --G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 420 --GKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred --CCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence 7789999844444343333 23333466799999999999999998853
No 141
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.84 E-value=2.9e-08 Score=86.40 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=25.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
..++.+|+|.|++||||||+++.|+..+.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35678999999999999999999998874
No 142
>COG0645 Predicted kinase [General function prediction only]
Probab=98.84 E-value=3.1e-08 Score=80.51 Aligned_cols=120 Identities=20% Similarity=0.192 Sum_probs=72.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcCh--HHHHHHHHHHHcCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD--EIVVTMVKERLSQPDSQ 162 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~--~~~~~~l~~~l~~~~~~ 162 (303)
..+++.|.||+||||+|+.|++.+|..+|..|.+.+.. ..-.... -...|.+.+. ...+..+...-......
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L-~g~p~~~-----r~~~g~ys~~~~~~vy~~l~~~A~l~l~~ 75 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRL-FGVPEET-----RGPAGLYSPAATAAVYDELLGRAELLLSS 75 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHh-cCCcccc-----cCCCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 46889999999999999999999999999998776553 2200000 0001211111 11222222222222223
Q ss_pred CCcEEEcCCCCCHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCC
Q 022042 163 ENGWLLDGYPRSLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRL 210 (303)
Q Consensus 163 ~~~~Vldg~p~~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~ 210 (303)
+..+|+|+--....+...+.. ....+...|.++++.+++.+|+..|..
T Consensus 76 G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 76 GHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred CCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence 788999983233333332222 223356789999999999999999974
No 143
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.83 E-value=2.5e-09 Score=90.68 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 86 KIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg 109 (303)
+|+|+|++||||||+|+.|+..|+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999996
No 144
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.81 E-value=2.7e-08 Score=80.84 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=54.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHc
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLS 157 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~ 157 (303)
++.+|+|+|.+||||||+|+.|.++| | ..+++.|.+ +..+..+-.+...-+.... . ....+...+.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l-R~~l~~dl~fs~~dR~e~~-------r-r~~~~A~ll~ 71 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL-RHGLNADLGFSKEDREENI-------R-RIAEVAKLLA 71 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH-CTTTTTT--SSHHHHHHHH-------H-HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch-hhccCCCCCCCHHHHHHHH-------H-HHHHHHHHHH
Confidence 46799999999999999999999988 3 345555544 3222221111111000000 0 0011111121
Q ss_pred CCCCCCCcEEEcCCCCCHHHHHHHHHhC-CCCcEEEEEEcCHHHHHHHH
Q 022042 158 QPDSQENGWLLDGYPRSLSQATALKKYG-FQPDLFILLEVPEDTLVERV 205 (303)
Q Consensus 158 ~~~~~~~~~Vldg~p~~~~~~~~l~~~~-~~pd~vI~L~~~~e~~~~Rl 205 (303)
. ++..+|+.......+..+...+.. ....+.|||+||.+++.+|=
T Consensus 72 ~---~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD 117 (156)
T PF01583_consen 72 D---QGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRD 117 (156)
T ss_dssp H---TTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHT
T ss_pred h---CCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhC
Confidence 1 244455554322222222222211 11357999999999999994
No 145
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.81 E-value=7.2e-08 Score=78.26 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=59.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CC--ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042 86 KIMISGAPASGKGTQCELIKEKY---GL--VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l---g~--~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~ 160 (303)
+|+|+|.|||||||+|+.|++.+ |. .+++.|.+ +..+.....+... ........+........
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~-r~~l~~~~~~~~~-----------~~~~~~~~~~~~a~~l~ 68 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV-RHGLNKDLGFSRE-----------DREENIRRIAEVAKLLA 68 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH-HHhhhhccCCCcc-----------hHHHHHHHHHHHHHHHH
Confidence 47899999999999999999998 54 34444443 3322211100000 00011111111111111
Q ss_pred CCCCcEEEcCCCCCHHHHHHHHHhC-CCCcEEEEEEcCHHHHHHHHhc
Q 022042 161 SQENGWLLDGYPRSLSQATALKKYG-FQPDLFILLEVPEDTLVERVVG 207 (303)
Q Consensus 161 ~~~~~~Vldg~p~~~~~~~~l~~~~-~~pd~vI~L~~~~e~~~~Rl~~ 207 (303)
..+..+|+|..-....+...+.+.. ..+..+|||++|.+++.+|-.+
T Consensus 69 ~~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 69 DAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred hCCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence 2356678886323333333333321 2456789999999999999644
No 146
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.76 E-value=5.1e-07 Score=79.78 Aligned_cols=102 Identities=20% Similarity=0.356 Sum_probs=59.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcC-CCCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQ-PDSQ 162 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~-~~~~ 162 (303)
|.+|+|+|.+||||||..+.| +.+|+..|+- + |...+..++...... ....
T Consensus 1 m~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvDN--l-------------------------P~~Ll~~l~~~~~~~~~~~~ 52 (284)
T PF03668_consen 1 MELVIITGLSGAGKSTALRAL-EDLGYYCVDN--L-------------------------PPSLLPQLIELLAQSNSKIE 52 (284)
T ss_pred CeEEEEeCCCcCCHHHHHHHH-HhcCeeEEcC--C-------------------------cHHHHHHHHHHHHhcCCCCc
Confidence 458999999999999999999 4588877731 1 222222222221111 1111
Q ss_pred CCcEEEcCCC----CCH-HHHHHHHHhCCCCcEEEEEEcCHHHHHHHHh-cCCCCCCC
Q 022042 163 ENGWLLDGYP----RSL-SQATALKKYGFQPDLFILLEVPEDTLVERVV-GRRLDPVT 214 (303)
Q Consensus 163 ~~~~Vldg~p----~~~-~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~-~R~~~~~~ 214 (303)
.-.+++|--. ... .....+.+.+ ..-.++||+|+++++++|.. -|+.||..
T Consensus 53 ~~Ai~iD~R~~~~~~~~~~~~~~l~~~~-~~~~ilFLdA~d~~LirRy~eTRR~HPL~ 109 (284)
T PF03668_consen 53 KVAIVIDIRSREFFEDLFEALDELRKKG-IDVRILFLDASDEVLIRRYSETRRRHPLS 109 (284)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHhcC-CceEEEEEECChHHHHHHHHhccCCCCCC
Confidence 2336667411 111 1222233333 23469999999999999997 45556543
No 147
>PLN02772 guanylate kinase
Probab=98.76 E-value=7.6e-08 Score=88.83 Aligned_cols=67 Identities=22% Similarity=0.394 Sum_probs=42.8
Q ss_pred ecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHH--HHhhcceEEEcCCCCHHHHHHHHHHHHH
Q 022042 218 YHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL--SLYEDVTVEVNGSVNKEDVFAQIDVALT 288 (303)
Q Consensus 218 ~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~--~~~~~~~~~Id~~~s~eev~~~I~~~l~ 288 (303)
+.+.+.||+.+++.+||..|..+.++.+++|+..+..+..... ..| -++|.++ ++++.++++.++|.
T Consensus 249 v~IFI~PPSlEeLe~RL~~RGteseE~I~kRL~~A~~Ei~~~~~~~~f---D~vIvND-dLe~A~~~L~~iL~ 317 (398)
T PLN02772 249 IFIFICPPSMEELEKRLRARGTETEEQIQKRLRNAEAELEQGKSSGIF---DHILYND-NLEECYKNLKKLLG 317 (398)
T ss_pred EEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccCCC---CEEEECC-CHHHHHHHHHHHHh
Confidence 3444556666666666666667778999999998865433211 122 2344554 88888888887764
No 148
>PRK05439 pantothenate kinase; Provisional
Probab=98.73 E-value=2.2e-08 Score=90.35 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=33.5
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CceeehHHHHH
Q 022042 80 ATVEPLKIMISGAPASGKGTQCELIKEKYG-------LVHIAAGDLLR 120 (303)
Q Consensus 80 ~~~~~~~I~I~G~pGSGKSTla~~La~~lg-------~~~i~~d~l~~ 120 (303)
....+.+|+|+|++||||||+|+.|++.++ ..++++|+++.
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY 129 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence 345678999999999999999999998663 35788887764
No 149
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.73 E-value=8.6e-08 Score=95.40 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=64.0
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHH
Q 022042 80 ATVEPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKE 154 (303)
Q Consensus 80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l-----g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~ 154 (303)
...++.+|+++|.|||||||+|+.|++++ ++.+++.|++-. .+..+..+....+ ......+..
T Consensus 456 ~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~-~l~~~~~~~~~~r-----------~~~~~~l~~ 523 (632)
T PRK05506 456 KGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRH-GLNRDLGFSDADR-----------VENIRRVAE 523 (632)
T ss_pred hCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhh-ccCCCCCCCHHHH-----------HHHHHHHHH
Confidence 34468899999999999999999999997 346677766543 2221111111100 001111111
Q ss_pred HHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCC-CCcEEEEEEcCHHHHHHHH
Q 022042 155 RLSQPDSQENGWLLDGYPRSLSQATALKKYGF-QPDLFILLEVPEDTLVERV 205 (303)
Q Consensus 155 ~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~-~pd~vI~L~~~~e~~~~Rl 205 (303)
........+..+|+|..-......+.+.+... .+.++|||+++.+++.+|.
T Consensus 524 ~a~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 524 VARLMADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD 575 (632)
T ss_pred HHHHHHhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC
Confidence 11111122455777753222333344444322 2447999999999999993
No 150
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.72 E-value=9.5e-08 Score=85.23 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=28.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CCceeehHHHH
Q 022042 86 KIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLL 119 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d~l~ 119 (303)
+|+|+|++||||||+++.|+..+ +..++..|++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 47899999999999999999877 45577777654
No 151
>PRK15453 phosphoribulokinase; Provisional
Probab=98.71 E-value=5.2e-08 Score=86.18 Aligned_cols=39 Identities=13% Similarity=0.239 Sum_probs=32.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLR 120 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~~ 120 (303)
.++++|+|+|.+||||||+|+.|++.|+ ..+++.|++.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 4678999999999999999999998774 45677776654
No 152
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.71 E-value=2.1e-06 Score=73.94 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=41.3
Q ss_pred hhhcccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHc
Q 022042 76 VLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA 125 (303)
Q Consensus 76 ~~~~~~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~ 125 (303)
.+--..+.|.+|+|-|++|.||||+|..||.++|+.++=..|.+|+.+..
T Consensus 81 R~ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ 130 (299)
T COG2074 81 RRIRKMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRK 130 (299)
T ss_pred HHHhccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHH
Confidence 33445567899999999999999999999999999877666777777664
No 153
>COG4639 Predicted kinase [General function prediction only]
Probab=98.70 E-value=1.4e-07 Score=75.42 Aligned_cols=112 Identities=19% Similarity=0.106 Sum_probs=70.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~ 164 (303)
..+++.|++||||||+++... .....++++++-...-. ..+. ....+ .+..+.+++...+++....++
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~lg~---~~~~----e~sqk---~~~~~~~~l~~~l~qrl~~Gk 70 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLLLGV---SASK----ENSQK---NDELVWDILYKQLEQRLRRGK 70 (168)
T ss_pred eEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHHhhh---chhh----hhccc---cHHHHHHHHHHHHHHHHHcCC
Confidence 478999999999999998642 36788888877543210 0110 11111 233444555555544444588
Q ss_pred cEEEcCCCCCHHH---HHHHHHhCCCCcEEEEEEcCHHHHHHHHhcC
Q 022042 165 GWLLDGYPRSLSQ---ATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (303)
Q Consensus 165 ~~Vldg~p~~~~~---~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R 208 (303)
..|+|......++ ...+.........+|++|.|.+.|.+|-+.|
T Consensus 71 ~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~ 117 (168)
T COG4639 71 FTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR 117 (168)
T ss_pred eEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc
Confidence 8999986544333 3334444445567899999999999997644
No 154
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.70 E-value=5e-08 Score=68.45 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022042 86 KIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l 108 (303)
+|+|+|++||||||+++.|++.|
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999985
No 155
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.69 E-value=1.6e-08 Score=87.38 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=28.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC-------CceeehHHHH
Q 022042 86 KIMISGAPASGKGTQCELIKEKYG-------LVHIAAGDLL 119 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg-------~~~i~~d~l~ 119 (303)
+|+|.|++||||||+|+.|+..+. ..++++|++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 478999999999999999999883 3567777664
No 156
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.68 E-value=3e-08 Score=88.84 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=31.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CceeehHHHHH
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYG-------LVHIAAGDLLR 120 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg-------~~~i~~d~l~~ 120 (303)
...|.+|+|.|++||||||+|+.|...+. +..+++|....
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 45678999999999999999998876653 34567776543
No 157
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.67 E-value=2.9e-08 Score=84.49 Aligned_cols=119 Identities=20% Similarity=0.324 Sum_probs=62.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCceeehHHHHHHHHHcCCcchHHHHHHHHcCC-Cc----ChHHHHHHH
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ-LV----PDEIVVTMV 152 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~-~~----~~~~~~~~l 152 (303)
..+|..|+|.|+|||||||++..+...+ ++.+|+.|++.... +....+........ .. ...+...++
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~-----p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 86 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH-----PDYDELLKADPDEASELTQKEASRLAEKLI 86 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS-----TTHHHHHHHHCCCTHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc-----cchhhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999987 67889988764321 11111111000000 00 011222333
Q ss_pred HHHHcCCCCCCCcEEEcCCCCCHHHH----HHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 153 KERLSQPDSQENGWLLDGYPRSLSQA----TALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 153 ~~~l~~~~~~~~~~Vldg~p~~~~~~----~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
...+.+ +..+|+|+.-...... +.+++.|.. -.++++.++++..+.|+..|.
T Consensus 87 ~~a~~~----~~nii~E~tl~~~~~~~~~~~~~k~~GY~-v~l~~v~~~~e~s~~rv~~R~ 142 (199)
T PF06414_consen 87 EYAIEN----RYNIIFEGTLSNPSKLRKLIREAKAAGYK-VELYYVAVPPELSIERVRQRY 142 (199)
T ss_dssp HHHHHC----T--EEEE--TTSSHHHHHHHHHHHCTT-E-EEEEEE---HHHHHHHHHHHH
T ss_pred HHHHHc----CCCEEEecCCCChhHHHHHHHHHHcCCce-EEEEEEECCHHHHHHHHHHHH
Confidence 444433 5679999843433333 334445543 467899999999999999884
No 158
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=98.66 E-value=1.7e-07 Score=78.00 Aligned_cols=123 Identities=18% Similarity=0.203 Sum_probs=74.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh-CCceeehHHHHHHHHHcCC-----------------cchHHHHHHHHcCCCc
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRAEIAAGS-----------------ENGKRAKEHMEKGQLV 143 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l-g~~~i~~d~l~~~~~~~~~-----------------~~~~~i~~~~~~g~~~ 143 (303)
++..+|+|.|...|||||||+.|.+.| |+..|+-|+++...-+-.. .+.+.+.-++......
T Consensus 2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~ 81 (225)
T KOG3308|consen 2 MKTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNA 81 (225)
T ss_pred ceEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCcccc
Confidence 455799999999999999999999988 6788888887765322110 1123333444443333
Q ss_pred ChHHHHHHH--------HHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCC
Q 022042 144 PDEIVVTMV--------KERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRL 210 (303)
Q Consensus 144 ~~~~~~~~l--------~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~ 210 (303)
++ ....++ ....+........+++|||--.... -+. ...|..|++..+.+++.+|-..|..
T Consensus 82 ~~-ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~--p~~---~~~d~~im~~~~y~~~krRr~~Rt~ 150 (225)
T KOG3308|consen 82 PE-AREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYK--PQV---DLFDRIIMLTLDYETCKRRREARTY 150 (225)
T ss_pred ch-HhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecc--hhh---hhhhhheeeeccHHHHHHhhccccc
Confidence 22 111111 1112222223456889996311100 011 1357899999999999999988864
No 159
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.65 E-value=1.6e-06 Score=69.84 Aligned_cols=90 Identities=18% Similarity=0.166 Sum_probs=57.6
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcH
Q 022042 163 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTE 242 (303)
Q Consensus 163 ~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~ 242 (303)
+..+|.+|--...-++.... .--+++.|.++++++.+|+.+|+ .++.
T Consensus 94 G~vvl~NgSRa~Lp~arrry----~~Llvv~ita~p~VLaqRL~~RG-----------------------------REs~ 140 (192)
T COG3709 94 GDVVLVNGSRAVLPQARRRY----PQLLVVCITASPEVLAQRLAERG-----------------------------RESR 140 (192)
T ss_pred CCEEEEeccHhhhHHHHHhh----hcceeEEEecCHHHHHHHHHHhc-----------------------------cCCH
Confidence 45566666422222322221 12268999999999999999885 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042 243 EKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL 290 (303)
Q Consensus 243 e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~ 290 (303)
|.+..|+....... .-+..+..|||++.++...+++...|.+-
T Consensus 141 eeI~aRL~R~a~~~-----~~~~dv~~idNsG~l~~ag~~ll~~l~~~ 183 (192)
T COG3709 141 EEILARLARAARYT-----AGPGDVTTIDNSGELEDAGERLLALLHQD 183 (192)
T ss_pred HHHHHHHHhhcccc-----cCCCCeEEEcCCCcHHHHHHHHHHHHHhh
Confidence 66666665432211 11346889999999999998888877643
No 160
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.60 E-value=2.1e-07 Score=77.94 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=31.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-----CCceeehHHHHHH
Q 022042 86 KIMISGAPASGKGTQCELIKEKY-----GLVHIAAGDLLRA 121 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l-----g~~~i~~d~l~~~ 121 (303)
+|+|.|++||||||+|+.|++.+ +..+|+.|++.+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~ 41 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP 41 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence 47899999999999999999986 4578999999864
No 161
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.57 E-value=4.5e-07 Score=87.54 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=32.9
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh-CCceeehHHHH
Q 022042 80 ATVEPLKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLL 119 (303)
Q Consensus 80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l-g~~~i~~d~l~ 119 (303)
....+.+|+|.|++||||||+++.|+..+ +...|++|+..
T Consensus 61 ~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~ 101 (656)
T PLN02318 61 KNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN 101 (656)
T ss_pred cCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence 34456899999999999999999999987 45678887753
No 162
>PLN02165 adenylate isopentenyltransferase
Probab=98.50 E-value=6.2e-07 Score=81.38 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=35.5
Q ss_pred cccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHH
Q 022042 79 SATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (303)
Q Consensus 79 ~~~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l 118 (303)
..+.++.+|+|+||+||||||++..|++.+|..+|++|.+
T Consensus 38 ~~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 38 EQNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred ccCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 3455667999999999999999999999999999999876
No 163
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.43 E-value=6.5e-07 Score=78.66 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=29.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHHH
Q 022042 86 KIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLR 120 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~~ 120 (303)
+|+|+|.+||||||+++.|.+.|+ ..+|+.|++.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 488999999999999999998773 45677777665
No 164
>PHA00729 NTP-binding motif containing protein
Probab=98.40 E-value=1.9e-06 Score=74.15 Aligned_cols=114 Identities=11% Similarity=0.010 Sum_probs=62.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc--eeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV--HIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP 159 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~--~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~ 159 (303)
.....|+|+|+||+||||+|..|+++++.. .+..++.... . ......+.-+.+...+.......
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d---~-----------~~~~~fid~~~Ll~~L~~a~~~~ 80 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQ---Y-----------VQNSYFFELPDALEKIQDAIDND 80 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHh---c-----------CCcEEEEEHHHHHHHHHHHHhcC
Confidence 345689999999999999999999987521 1212211100 0 00011122222333333333221
Q ss_pred CCCCCcEEEcCCCCCHHH---H--------HHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCC
Q 022042 160 DSQENGWLLDGYPRSLSQ---A--------TALKKYGFQPDLFILLEVPEDTLVERVVGRRL 210 (303)
Q Consensus 160 ~~~~~~~Vldg~p~~~~~---~--------~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~ 210 (303)
. ...-+|+|++.-.... . ..........++++++.++++.+.+++..|+.
T Consensus 81 ~-~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~ 141 (226)
T PHA00729 81 Y-RIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGW 141 (226)
T ss_pred C-CCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCC
Confidence 1 1134688984321111 1 01111122478899999999999999999864
No 165
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.32 E-value=4.2e-05 Score=66.38 Aligned_cols=148 Identities=14% Similarity=0.251 Sum_probs=80.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHH-HcCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKER-LSQPDSQE 163 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~-l~~~~~~~ 163 (303)
.+|+|+|.+|||||+-.+.|. .+|+.+++ ++ |.+.+-.++.-. ..+.....
T Consensus 2 ~lvIVTGlSGAGKsvAl~~lE-DlGyycvD--NL-------------------------Pp~Llp~~~~~~~~~~~~~~k 53 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVLE-DLGYYCVD--NL-------------------------PPQLLPKLADLMLTLESRITK 53 (286)
T ss_pred cEEEEecCCCCcHHHHHHHHH-hcCeeeec--CC-------------------------CHHHHHHHHHHHhhcccCCce
Confidence 478999999999999999994 47877662 11 223222222211 11111112
Q ss_pred CcEEEcC----CCCCH-HHHHHHHHhCCCCcEEEEEEcCHHHHHHHHh-cCCCCCCCCceecccCCCCCchHHHhhhccC
Q 022042 164 NGWLLDG----YPRSL-SQATALKKYGFQPDLFILLEVPEDTLVERVV-GRRLDPVTGKIYHVKYSPPETDEIAARLTKR 237 (303)
Q Consensus 164 ~~~Vldg----~p~~~-~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~-~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r 237 (303)
-.+++|- |.... .....+.+.+..--.++||+++.+++++|.. .|+.||..+..
T Consensus 54 vAv~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~-------------------- 113 (286)
T COG1660 54 VAVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLSEDG-------------------- 113 (286)
T ss_pred EEEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCCccC--------------------
Confidence 3467773 22222 2233344443111358999999999999997 45555543320
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcC-CCCHHHHHHHHHHHHHH
Q 022042 238 FDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNG-SVNKEDVFAQIDVALTN 289 (303)
Q Consensus 238 ~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~-~~s~eev~~~I~~~l~~ 289 (303)
. +..-++.-++...++.+.-+ .+||. +.++-++-+.|...+..
T Consensus 114 -~-----l~~~I~~ERelL~pLk~~A~---~vIDTs~ls~~~Lr~~i~~~f~~ 157 (286)
T COG1660 114 -L-----LLEAIAKERELLAPLREIAD---LVIDTSELSVHELRERIRTRFLG 157 (286)
T ss_pred -c-----HHHHHHHHHHHHHHHHHHhh---hEeecccCCHHHHHHHHHHHHcc
Confidence 0 11222223333444443322 35664 57888877777776653
No 166
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.27 E-value=9.6e-06 Score=69.88 Aligned_cols=151 Identities=18% Similarity=0.210 Sum_probs=73.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHHHHHHcCC---------cchHHHHHHHHcCCCcChHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRAEIAAGS---------ENGKRAKEHMEKGQLVPDEIV 148 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~~~~~~~~---------~~~~~i~~~~~~g~~~~~~~~ 148 (303)
...+|++.|.|+.|||++|+.|++.| | ..+++++++-|+...... ..+..+++.+. ...+
T Consensus 11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a------~~~l 84 (222)
T PF01591_consen 11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIA------KEAL 84 (222)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHH------HHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHH------HHHH
Confidence 34689999999999999999999876 3 367999998887655411 11122222111 1111
Q ss_pred HHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhC-CCCcEEEEEE--cCHHHHHH-HHhcCCCCCCCCceecccCCC
Q 022042 149 VTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYG-FQPDLFILLE--VPEDTLVE-RVVGRRLDPVTGKIYHVKYSP 224 (303)
Q Consensus 149 ~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~-~~pd~vI~L~--~~~e~~~~-Rl~~R~~~~~~g~~~~~~~~~ 224 (303)
+-+...+... .+..-|+|+-..+....+.+.+.. .....++||+ |+++.+++ .+....... ..|.
T Consensus 85 -~dl~~~l~~~--~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~s---pDY~----- 153 (222)
T PF01591_consen 85 -EDLIEWLQEE--GGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNS---PDYK----- 153 (222)
T ss_dssp -HHHHHHHHTS----SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTS---GGGT-----
T ss_pred -HHHHHHHhcC--CCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCC---cccc-----
Confidence 2222233321 245678999777776665544421 0113455555 56555544 443221110 0010
Q ss_pred CCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHH
Q 022042 225 PETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260 (303)
Q Consensus 225 p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~ 260 (303)
+ ...++-.+.+.+|++.|...++++-
T Consensus 154 ----~------~~~e~A~~Df~~RI~~Ye~~YEpl~ 179 (222)
T PF01591_consen 154 ----G------MDPEEAIEDFKKRIEHYEKVYEPLD 179 (222)
T ss_dssp ----T------S-HHHHHHHHHHHHHHHHTT-----
T ss_pred ----c------CCHHHHHHHHHHHHHhhcccccccc
Confidence 0 0001134567789999999999887
No 167
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.24 E-value=3.4e-06 Score=70.59 Aligned_cols=115 Identities=18% Similarity=0.245 Sum_probs=56.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcC-------CcchHHHH--HH---HHcC-------CCcChH
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAG-------SENGKRAK--EH---MEKG-------QLVPDE 146 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~-------~~~~~~i~--~~---~~~g-------~~~~~~ 146 (303)
+|.|.|..|||++++|+.||++||+.+++- +++.+..... ..+.+... .+ +..+ ....++
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 688999999999999999999999999988 5655433321 01111111 11 1111 111122
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcC
Q 022042 147 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (303)
Q Consensus 147 ~~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R 208 (303)
.+.......+.+... .+.+|+.|.. .... +. +....+-|+|.+|.+.+.+|++++
T Consensus 80 ~~~~~~~~~i~~la~-~~~~Vi~GR~--a~~i--l~--~~~~~l~V~i~A~~~~Rv~ri~~~ 134 (179)
T PF13189_consen 80 KIFRAQSEIIRELAA-KGNCVIVGRC--ANYI--LR--DIPNVLHVFIYAPLEFRVERIMER 134 (179)
T ss_dssp HHHHHHHHHHHHHHH----EEEESTT--HHHH--TT--T-TTEEEEEEEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cCCEEEEecC--Hhhh--hC--CCCCeEEEEEECCHHHHHHHHHHH
Confidence 222322222222211 2456666632 1111 11 112357899999999999999987
No 168
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=98.23 E-value=1.8e-06 Score=75.52 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=25.7
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 80 ATVEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
....+.+|+|.|++|+||||+|+.|+..+
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll 106 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALL 106 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHH
Confidence 34567899999999999999999998876
No 169
>PRK09169 hypothetical protein; Validated
Probab=98.22 E-value=3.4e-05 Score=83.23 Aligned_cols=112 Identities=11% Similarity=-0.006 Sum_probs=80.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~ 160 (303)
......|+|+|.+|+||||+.+.|++++++.+++.|..+.+. .++.|.+++.... .+.+.....+.+.+.
T Consensus 2107 rL~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks------~GrkI~rIFa~eG-~FRe~Eaa~V~Dllr--- 2176 (2316)
T PRK09169 2107 RLGAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKK------IGKKIARIQALRG-LSPEQAAARVRDALR--- 2176 (2316)
T ss_pred HHhhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHH------hCCCHHHHHHhcC-chHHHHHHHHHHHhc---
Confidence 344568999999999999999999999999999999888774 5677777776544 555555556655552
Q ss_pred CCCCcEEEc-CC-CCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcC
Q 022042 161 SQENGWLLD-GY-PRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (303)
Q Consensus 161 ~~~~~~Vld-g~-p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R 208 (303)
...+|-. || .........+...| ++||++.+.+++.+|+.+.
T Consensus 2177 --~~vVLSTGGGav~~~enr~~L~~~G----lvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169 2177 --WEVVLPAEGFGAAVEQARQALGAKG----LRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred --CCeEEeCCCCcccCHHHHHHHHHCC----EEEEEECCHHHHHHHhccC
Confidence 1223333 22 33444455566554 7999999999999999754
No 170
>PHA03136 thymidine kinase; Provisional
Probab=98.20 E-value=6e-05 Score=69.26 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=22.0
Q ss_pred CCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 186 FQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 186 ~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
..||.+|||+++++++.+|+.+|.
T Consensus 190 p~pD~IIyL~l~~e~~~~RI~kRg 213 (378)
T PHA03136 190 PHGGNIVIMDLDECEHAERIIARG 213 (378)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcC
Confidence 358999999999999999999995
No 171
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=98.20 E-value=0.0003 Score=58.58 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=23.2
Q ss_pred CCCCcEEEEEEcCHHHHHHHHhcCCC
Q 022042 185 GFQPDLFILLEVPEDTLVERVVGRRL 210 (303)
Q Consensus 185 ~~~pd~vI~L~~~~e~~~~Rl~~R~~ 210 (303)
...+|.+|||.+++++|.+|+..|..
T Consensus 151 ~v~~dgiIYLrasPetc~~Ri~~R~R 176 (244)
T KOG4235|consen 151 DVSLDGIIYLRASPETCYKRIYLRAR 176 (244)
T ss_pred ccccceEEEeecChHHHHHHHHHHhh
Confidence 36789999999999999999998853
No 172
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=98.11 E-value=0.00016 Score=62.60 Aligned_cols=155 Identities=16% Similarity=0.112 Sum_probs=83.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~ 160 (303)
...|.+|+|.|..||||+.+.+.|.+.++-..+.+-.+- .+...+.-...+........
T Consensus 28 ~~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~---------------------~pt~eE~~~p~lwRfw~~lP 86 (230)
T TIGR03707 28 TGARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALP---------------------KPSDRERTQWYFQRYVQHLP 86 (230)
T ss_pred cCCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCC---------------------CCCHHHHcChHHHHHHHhCC
Confidence 346889999999999999999999999864443321110 00001111111122222222
Q ss_pred CCCCcEEEcC-------------------CCCCHHHHHHHHHh---CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCcee
Q 022042 161 SQENGWLLDG-------------------YPRSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIY 218 (303)
Q Consensus 161 ~~~~~~Vldg-------------------~p~~~~~~~~l~~~---~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~ 218 (303)
..|...|+|+ +.+...++..|++. ....-+-+||+++.++..+|+.+|..++.+.-
T Consensus 87 ~~G~i~IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~W-- 164 (230)
T TIGR03707 87 AAGEIVLFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLKQW-- 164 (230)
T ss_pred CCCeEEEEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcccc--
Confidence 2233333332 11122233333331 22334678999999999999999876554311
Q ss_pred cccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhh---cceEEEcCCCCH
Q 022042 219 HVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE---DVTVEVNGSVNK 276 (303)
Q Consensus 219 ~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~---~~~~~Id~~~s~ 276 (303)
+.....-...+++..|...++.++..-. ..+++|+++..-
T Consensus 165 ------------------k~~~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~ 207 (230)
T TIGR03707 165 ------------------KLSPMDLASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDDKK 207 (230)
T ss_pred ------------------cCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHH
Confidence 1111122223456666666666554332 268889987543
No 173
>PRK06761 hypothetical protein; Provisional
Probab=98.11 E-value=4.3e-05 Score=68.21 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=26.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
.++|+|+|++||||||+++.|+++++...+++
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v 34 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEV 34 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEE
Confidence 35899999999999999999999997544433
No 174
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.10 E-value=2.9e-05 Score=62.58 Aligned_cols=141 Identities=18% Similarity=0.212 Sum_probs=75.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh--CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY--GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l--g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~ 162 (303)
...++.|+.||||||+...+-..+ ++.+|+.|++..+. .+..+....++. + ......+...+. .
T Consensus 3 ~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i-~p~~p~~~~i~A----~-----r~ai~~i~~~I~----~ 68 (187)
T COG4185 3 RLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQI-SPDNPTSAAIQA----A-----RVAIDRIARLID----L 68 (187)
T ss_pred eEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhc-CCCCchHHHHHH----H-----HHHHHHHHHHHH----c
Confidence 456788999999999965554444 57889999887653 222222111111 1 111122222222 2
Q ss_pred CCcEEEcC---CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042 163 ENGWLLDG---YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD 239 (303)
Q Consensus 163 ~~~~Vldg---~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~ 239 (303)
+.++..+. .+.-....+..+..|+...+.++.--+.|..++|+..|-.. ...+
T Consensus 69 ~~~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~------------------------GGH~ 124 (187)
T COG4185 69 GRPFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAK------------------------GGHD 124 (187)
T ss_pred CCCcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhc------------------------CCCC
Confidence 55666654 22333444444555544433333334557889999877421 1123
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHh
Q 022042 240 DTEEKVKLRLKTHHHNVEAVLSLY 263 (303)
Q Consensus 240 d~~e~~~~r~~~~~~~~~~~~~~~ 263 (303)
-.++.++.|+..-.++....+...
T Consensus 125 IpED~Ir~RY~rsle~l~~~l~l~ 148 (187)
T COG4185 125 IPEDKIRRRYRRSLELLAQALTLA 148 (187)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhc
Confidence 457778888877555555544443
No 175
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=98.08 E-value=2.7e-05 Score=73.21 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=34.0
Q ss_pred Ccchhhhhhccc---CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042 70 NSANFQVLASAT---VEPLKIMISGAPASGKGTQCELIKEKYGLVHI 113 (303)
Q Consensus 70 ~~~~~~~~~~~~---~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i 113 (303)
.|...|..-+.. -...+|+|+|++|||||||++.|+++||...+
T Consensus 202 ~p~~~w~~i~~~vr~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 202 NPFRYWEYIPTEVRPFFVRTVAILGGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred CHHHHHHhcCHHHhhCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 355556544333 24578999999999999999999999998765
No 176
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.05 E-value=2.7e-05 Score=64.54 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGL 110 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~ 110 (303)
++|+|+|++||||||+|..|+..++.
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~ 27 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGL 27 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCC
Confidence 57999999999999999999999874
No 177
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=98.03 E-value=0.00035 Score=57.56 Aligned_cols=116 Identities=17% Similarity=0.157 Sum_probs=70.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC---ceeehHHHHHHHHHcC-----------Ccch----HHHHHHHHcCCCcChHH
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGL---VHIAAGDLLRAEIAAG-----------SENG----KRAKEHMEKGQLVPDEI 147 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~---~~i~~d~l~~~~~~~~-----------~~~~----~~i~~~~~~g~~~~~~~ 147 (303)
+|+|+|..+|||-|++..|.+.|+. ..+...+-+++..... .+.. ..+-++.+....-....
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp~~ 80 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGF 80 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHHhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCccH
Confidence 5889999999999999999999874 2566655555444321 1111 11222222111112233
Q ss_pred HHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhc
Q 022042 148 VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVG 207 (303)
Q Consensus 148 ~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~ 207 (303)
+.+.+...+. ...||+++. |....+.+|......--+.|-+.++++++.+|.-.
T Consensus 81 F~r~~~~~~~-----~~v~iIsD~-Rr~~dv~~f~~~~g~~~~~VRV~AseetR~~Rgw~ 134 (182)
T TIGR01223 81 FCRKIVEGIS-----QPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWV 134 (182)
T ss_pred HHHHHHhccC-----CCEEEEeCC-CcccHHHHHHHHcCCceEEEEEecCHHHHHHHHHh
Confidence 4443333221 257888887 66667777776543344788999999999999844
No 178
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.00 E-value=5.4e-06 Score=64.99 Aligned_cols=29 Identities=28% Similarity=0.542 Sum_probs=25.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 87 IMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 87 I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
|+|.|+||+||||+++.|++.++.+++.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i 29 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEI 29 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccc
Confidence 67999999999999999999999766443
No 179
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.99 E-value=3.1e-05 Score=65.55 Aligned_cols=121 Identities=17% Similarity=0.204 Sum_probs=62.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHH-HHHcCC--cchH---------HHHHHHHcCCCcChHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRA-EIAAGS--ENGK---------RAKEHMEKGQLVPDEIVVTM 151 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~-~~~~~~--~~~~---------~i~~~~~~g~~~~~~~~~~~ 151 (303)
|.+++|.||+|+|||.+|-.||+++|.++|+.|.+.-- .+.-++ +... .-...+..|. ++.+...+.
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~ 79 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHER 79 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHH
T ss_pred CcEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHH
Confidence 46889999999999999999999999999998854211 011010 0000 0112344454 445556677
Q ss_pred HHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhC----CCCcEEEEEEcCHHHH-HHHHhcC
Q 022042 152 VKERLSQPDSQENGWLLDGYPRSLSQATALKKYG----FQPDLFILLEVPEDTL-VERVVGR 208 (303)
Q Consensus 152 l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~----~~pd~vI~L~~~~e~~-~~Rl~~R 208 (303)
+...+..... ++++|++|-. ..-...+.+.. ...-.++++.++.+.. +.|..+|
T Consensus 80 Li~~v~~~~~-~~~~IlEGGS--ISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~R 138 (233)
T PF01745_consen 80 LISEVNSYSA-HGGLILEGGS--ISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRR 138 (233)
T ss_dssp HHHHHHTTTT-SSEEEEEE----HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHH
T ss_pred HHHHHHhccc-cCceEEeCch--HHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHH
Confidence 7777777776 7899999842 22233333321 1122467777776544 5566555
No 180
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=97.98 E-value=0.00039 Score=61.43 Aligned_cols=153 Identities=12% Similarity=0.122 Sum_probs=82.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~ 161 (303)
..+.+|+|.|..||||..+.+.|.+.++-..+.+-.+ +.+...+.-...+.........
T Consensus 54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~---------------------~~Pt~eE~~~p~lWRfw~~lP~ 112 (264)
T TIGR03709 54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSF---------------------KAPSAEELDHDFLWRIHKALPE 112 (264)
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeC---------------------CCCCHHHHcCchHHHHHHhCCC
Confidence 4588999999999999999999999985443332111 0000011111111112222222
Q ss_pred CCCcEEEcC--C-----------------CCCHHHHHHHHHh---CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceec
Q 022042 162 QENGWLLDG--Y-----------------PRSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYH 219 (303)
Q Consensus 162 ~~~~~Vldg--~-----------------p~~~~~~~~l~~~---~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~ 219 (303)
.|...|+|+ | .+...++..|++. ....-+-+||+++.++..+|+.+|..++.+.-
T Consensus 113 ~G~i~IF~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~W--- 189 (264)
T TIGR03709 113 RGEIGIFNRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKNW--- 189 (264)
T ss_pred CCeEEEEcCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCcccc---
Confidence 233333332 1 1122222233331 22334678999999999999998875543211
Q ss_pred ccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHh---hcceEEEcCCCC
Q 022042 220 VKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY---EDVTVEVNGSVN 275 (303)
Q Consensus 220 ~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~---~~~~~~Id~~~s 275 (303)
+.....-...+++..|...++.++..= ...+++|+++..
T Consensus 190 -----------------k~s~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk 231 (264)
T TIGR03709 190 -----------------KFSPADLKERAYWDDYMEAYEDALTATSTKHAPWYVVPADDK 231 (264)
T ss_pred -----------------cCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCH
Confidence 111112233445667776666655442 236888998754
No 181
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.98 E-value=0.00041 Score=66.48 Aligned_cols=168 Identities=18% Similarity=0.115 Sum_probs=90.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC---CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHc
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLS 157 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg---~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~ 157 (303)
...+.+|+|.|..||||+++.+.|.+.++ +.+.+... +.+.+.-...+.....
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~------------------------P~~eE~~~~flwRfw~ 92 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGR------------------------PSDEERERPPMWRFWR 92 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCC------------------------CCHHHhcCcHHHHHHH
Confidence 45678999999999999999999999885 33333211 0001111111112222
Q ss_pred CCCCCCCcEEEcC--C-----------------CCCHHHHHHHHHh---CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 022042 158 QPDSQENGWLLDG--Y-----------------PRSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTG 215 (303)
Q Consensus 158 ~~~~~~~~~Vldg--~-----------------p~~~~~~~~l~~~---~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g 215 (303)
.....|...|+|+ | .+...++..|++. ....-+-+||+++.++..+|+.+|..++.+.
T Consensus 93 ~lP~~G~I~IFdRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k~ 172 (493)
T TIGR03708 93 RLPPKGKIGIFFGSWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPETR 172 (493)
T ss_pred hCCCCCeEEEEcCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccc
Confidence 2222233333332 1 1112222223331 2233467899999999999999997655431
Q ss_pred ceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhh---cceEEEcCCCC---HHHHHHHHHHHHHH
Q 022042 216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE---DVTVEVNGSVN---KEDVFAQIDVALTN 289 (303)
Q Consensus 216 ~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~---~~~~~Id~~~s---~eev~~~I~~~l~~ 289 (303)
- ......-...+++..|...++..+..-. ..+++|+++.. .-.|.+.|.+.|+.
T Consensus 173 W--------------------K~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~addK~~arl~v~~~il~~L~~ 232 (493)
T TIGR03708 173 W--------------------RVTPEDWKQLKVYDRYRKLAERMLRYTSTPYAPWTVVEGEDDRYRSLTVGRTLLAAIRA 232 (493)
T ss_pred c--------------------CCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHH
Confidence 1 0111122223356666666665554322 26888998753 33455556666665
Q ss_pred HHH
Q 022042 290 LLE 292 (303)
Q Consensus 290 ~l~ 292 (303)
.+.
T Consensus 233 ~l~ 235 (493)
T TIGR03708 233 RLA 235 (493)
T ss_pred HHh
Confidence 553
No 182
>PF13173 AAA_14: AAA domain
Probab=97.96 E-value=0.00013 Score=57.49 Aligned_cols=114 Identities=18% Similarity=0.310 Sum_probs=65.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC----CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYG----LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg----~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~ 160 (303)
++++|.|+.|+||||+++.+++.+. +.+++.++.-..... . .+ +...+.+....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~--------------~----~~--~~~~~~~~~~~-- 60 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA--------------D----PD--LLEYFLELIKP-- 60 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh--------------h----hh--hHHHHHHhhcc--
Confidence 4789999999999999999998875 677777655432110 0 00 11222222111
Q ss_pred CCCCcEEEcCC---CCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCC
Q 022042 161 SQENGWLLDGY---PRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPE 226 (303)
Q Consensus 161 ~~~~~~Vldg~---p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~ 226 (303)
....+++|.+ |......+.+.+.+ ++..|++..+......+ .......|+.......|.+
T Consensus 61 -~~~~i~iDEiq~~~~~~~~lk~l~d~~--~~~~ii~tgS~~~~l~~---~~~~~l~gr~~~~~l~Pls 123 (128)
T PF13173_consen 61 -GKKYIFIDEIQYLPDWEDALKFLVDNG--PNIKIILTGSSSSLLSK---DIAESLAGRVIEIELYPLS 123 (128)
T ss_pred -CCcEEEEehhhhhccHHHHHHHHHHhc--cCceEEEEccchHHHhh---cccccCCCeEEEEEECCCC
Confidence 2466888974 33333344444433 67788888887666543 1223445665555554443
No 183
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.92 E-value=1e-05 Score=73.21 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=32.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l 118 (303)
.+++|+|+||+||||||+|..|+++++..+|+.|.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 457899999999999999999999999999988863
No 184
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=97.88 E-value=5.5e-05 Score=64.26 Aligned_cols=114 Identities=19% Similarity=0.249 Sum_probs=63.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh---C---CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHc
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY---G---LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLS 157 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l---g---~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~ 157 (303)
|+.|+|+|-|.|||||.|+.|.+.| + ...|.-|+-+ .+......+..- .+..+...+...+.
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~desl--g~~~ns~y~~s~----------~EK~lRg~L~S~v~ 68 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESL--GIEKNSNYGDSQ----------AEKALRGKLRSAVD 68 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhc--CCCCcccccccH----------HHHHHHHHHHHHHH
Confidence 4689999999999999999999987 2 1222222211 001111111111 12234445555565
Q ss_pred CCCCCCCcEEEcCCC--CCHH-HHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 158 QPDSQENGWLLDGYP--RSLS-QATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 158 ~~~~~~~~~Vldg~p--~~~~-~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
.....+..+|+|... ..+. +.--..+....-.+|||..+|.+.+.+--.+|.
T Consensus 69 R~Lsk~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~ 123 (281)
T KOG3062|consen 69 RSLSKGDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSERE 123 (281)
T ss_pred hhcccCcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCC
Confidence 655667788888521 1100 000011122234579999999999988776664
No 185
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.88 E-value=4.3e-05 Score=61.06 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 86 KIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg 109 (303)
+|+|+||+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999999864
No 186
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=8.3e-05 Score=71.57 Aligned_cols=30 Identities=20% Similarity=0.500 Sum_probs=27.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
=|+|.||||||||.+|+.||.++|++++++
T Consensus 225 GvLlHGPPGCGKT~lA~AiAgel~vPf~~i 254 (802)
T KOG0733|consen 225 GVLLHGPPGCGKTSLANAIAGELGVPFLSI 254 (802)
T ss_pred ceeeeCCCCccHHHHHHHHhhhcCCceEee
Confidence 488999999999999999999999988765
No 187
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=97.86 E-value=0.00025 Score=71.14 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCC-----ceeehHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGL-----VHIAAGDLLRA 121 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~-----~~i~~d~l~~~ 121 (303)
...+|++.|.||+||||+++.|++.++. .++..+.+-+.
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~ 257 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRR 257 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhh
Confidence 3468999999999999999999998854 34444444443
No 188
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.81 E-value=1.4e-05 Score=65.64 Aligned_cols=37 Identities=30% Similarity=0.531 Sum_probs=25.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHc
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA 125 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~ 125 (303)
+|+|+|++|+||||+++.|++. |+.++ .+..+..+..
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~~~ 37 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREIIEE 37 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHHHHH
Confidence 4899999999999999999988 88877 5565555443
No 189
>PLN02840 tRNA dimethylallyltransferase
Probab=97.81 E-value=1.9e-05 Score=74.03 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=31.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD 117 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~ 117 (303)
.++++|+|.||+||||||++..|+++++..+|+.|.
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 345689999999999999999999999988888774
No 190
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.77 E-value=3.7e-05 Score=65.84 Aligned_cols=40 Identities=30% Similarity=0.326 Sum_probs=33.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCce-eehHHHHHHHHHc
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVH-IAAGDLLRAEIAA 125 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~-i~~d~l~~~~~~~ 125 (303)
|+|+|+|.|||||||+++.+.+. |.++ +++++.+++.+..
T Consensus 1 miI~i~G~~gsGKstva~~~~~~-g~~~~~~~~d~ik~~l~~ 41 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN-YNAVKYQLADPIKEILAI 41 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc-CCcEEEehhHHHHHHHHH
Confidence 58999999999999999999665 5566 9999988887653
No 191
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.76 E-value=2.8e-05 Score=62.85 Aligned_cols=27 Identities=41% Similarity=0.527 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
.+|.|+|+|+||+||||++..|++.+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 357999999999999999999998873
No 192
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.75 E-value=0.00022 Score=68.71 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
.|+-|++.||||+|||.+|+.+|..+|.+++.+
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l 290 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL 290 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 456789999999999999999999999876654
No 193
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=97.74 E-value=9.4e-05 Score=59.05 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=25.8
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 80 ATVEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+.+..+|+|+|.+||||||+|-.|.+.+
T Consensus 27 ~~qkGcviWiTGLSgSGKStlACaL~q~L 55 (207)
T KOG0635|consen 27 LKQKGCVIWITGLSGSGKSTLACALSQAL 55 (207)
T ss_pred hcCCCcEEEEeccCCCCchhHHHHHHHHH
Confidence 35677899999999999999999998877
No 194
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=97.74 E-value=0.00014 Score=62.96 Aligned_cols=148 Identities=16% Similarity=0.134 Sum_probs=74.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC---CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQ 158 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg---~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~ 158 (303)
..|.+|+|.|..||||+.+.+.|.+.++ +.+.+.+.--.+ +.-...+......
T Consensus 29 ~~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~e------------------------E~~~p~lwRfw~~ 84 (228)
T PF03976_consen 29 GIPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDE------------------------ELRRPFLWRFWRA 84 (228)
T ss_dssp HHEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HH------------------------HHTS-TTHHHHTT
T ss_pred CCcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChh------------------------HcCCCcHHHHHHh
Confidence 3568999999999999999999998874 333333211111 1111122223333
Q ss_pred CCCCCCcEEEcC--C-----------------CCCHHHHHHHHHh---CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 022042 159 PDSQENGWLLDG--Y-----------------PRSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGK 216 (303)
Q Consensus 159 ~~~~~~~~Vldg--~-----------------p~~~~~~~~l~~~---~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~ 216 (303)
....|...|+|+ | .+...++..|++. ....-+-+||+++.++..+|+.+|..++.+.-
T Consensus 85 lP~~G~I~if~rSWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~~p~~~w 164 (228)
T PF03976_consen 85 LPARGQIGIFDRSWYEDVLVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKEREEDPLKRW 164 (228)
T ss_dssp S--TT-EEEEES-GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSCCCGG
T ss_pred CCCCCEEEEEecchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHHhcCccccc
Confidence 333344455553 1 1112222223321 22234678999999999999998865443321
Q ss_pred eecccCCCCCchHHHhhhccCCCCcHHH--HHHHHHHHHHHHHHHHHHh---hcceEEEcCCCC
Q 022042 217 IYHVKYSPPETDEIAARLTKRFDDTEEK--VKLRLKTHHHNVEAVLSLY---EDVTVEVNGSVN 275 (303)
Q Consensus 217 ~~~~~~~~p~~~~i~~rL~~r~~d~~e~--~~~r~~~~~~~~~~~~~~~---~~~~~~Id~~~s 275 (303)
.-++.. ..+.+..|...++.++..- ...+++|+++..
T Consensus 165 ----------------------kv~~~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~dk 206 (228)
T PF03976_consen 165 ----------------------KVSPEDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPADDK 206 (228)
T ss_dssp ----------------------G--HHHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-SSH
T ss_pred ----------------------cCCHHHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCCCH
Confidence 111221 2234566666655555432 236888998754
No 195
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00058 Score=66.42 Aligned_cols=34 Identities=18% Similarity=0.437 Sum_probs=29.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
..|+-|++.|||||||||+|+.||..-++.++++
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv 499 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV 499 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeec
Confidence 3456799999999999999999999987777665
No 196
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.62 E-value=4.7e-05 Score=68.20 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=29.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCceeehHH
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGD 117 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~ 117 (303)
+|+|+||+|||||+++..|++.++..+|++|.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence 47899999999999999999999999999875
No 197
>PLN02748 tRNA dimethylallyltransferase
Probab=97.61 E-value=5.5e-05 Score=72.07 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=32.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD 117 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~ 117 (303)
.++.+|+|+||+|||||+++..|+++++..+|+.|.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 345689999999999999999999999999999984
No 198
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.59 E-value=0.00069 Score=54.62 Aligned_cols=134 Identities=11% Similarity=0.090 Sum_probs=74.5
Q ss_pred hhhhcccCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CceeehHHHHHHHHHcCCcchHH--HHH-HHHcC---CCcChH
Q 022042 75 QVLASATVEPLKIMISGAPASGKGTQCELIKEKYG--LVHIAAGDLLRAEIAAGSENGKR--AKE-HMEKG---QLVPDE 146 (303)
Q Consensus 75 ~~~~~~~~~~~~I~I~G~pGSGKSTla~~La~~lg--~~~i~~d~l~~~~~~~~~~~~~~--i~~-~~~~g---~~~~~~ 146 (303)
+..++...+..+|++-|.+-+|||++|..|.+-+. +-+|-+|.++..........+.- ... ...++ ..+...
T Consensus 14 ~~~~ag~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~g 93 (205)
T COG3896 14 LAAMAGMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPG 93 (205)
T ss_pred HHHHcCCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeech
Confidence 44566677788999999999999999999988764 45566666655443321111110 000 00111 111111
Q ss_pred HHHHH----HHHHHcCCCCCCCcEEEcCCCCCHHHHHH-HHHhCCCCcEEEEEEcCHHHHHHHHhcC
Q 022042 147 IVVTM----VKERLSQPDSQENGWLLDGYPRSLSQATA-LKKYGFQPDLFILLEVPEDTLVERVVGR 208 (303)
Q Consensus 147 ~~~~~----l~~~l~~~~~~~~~~Vldg~p~~~~~~~~-l~~~~~~pd~vI~L~~~~e~~~~Rl~~R 208 (303)
-+.+. ....+.....++..+|.|.+-.+..+... +......+..++-+.||.|++.+|-..|
T Consensus 94 pi~e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr 160 (205)
T COG3896 94 PILELAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRR 160 (205)
T ss_pred hHHHHHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhc
Confidence 11111 12222222223667888887655443322 2223334557888999999999887665
No 199
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00076 Score=63.32 Aligned_cols=107 Identities=21% Similarity=0.283 Sum_probs=56.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh----C--CceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY----G--LVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKER 155 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l----g--~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~ 155 (303)
++.+|+|+|++||||||++..|+..+ | ..+++.| ..+... ...+..+... +..+........+...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D-t~R~aA------~eQLk~yAe~lgvp~~~~~~~~~l~~~ 294 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD-NYRIAA------IEQLKRYADTMGMPFYPVKDIKKFKET 294 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc-chhhhH------HHHHHHHHHhcCCCeeehHHHHHHHHH
Confidence 45689999999999999999999765 2 2334444 333211 1122222222 1111111111233333
Q ss_pred HcCCCCCCCcEEEc--CCC-CCHHHHHHHHHhC----C-CC-cEEEEEEcCH
Q 022042 156 LSQPDSQENGWLLD--GYP-RSLSQATALKKYG----F-QP-DLFILLEVPE 198 (303)
Q Consensus 156 l~~~~~~~~~~Vld--g~p-~~~~~~~~l~~~~----~-~p-d~vI~L~~~~ 198 (303)
+... ....+++| |++ ++..+++.|.+.. . .+ ..++.|++..
T Consensus 295 l~~~--~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 295 LARD--GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred HHhC--CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 4321 23669999 653 6677777766521 1 12 3455666554
No 200
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=5.4e-05 Score=67.70 Aligned_cols=26 Identities=27% Similarity=0.669 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGL 110 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~ 110 (303)
.+|.+.||||+|||++|+.||+++.+
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhhee
Confidence 47999999999999999999999854
No 201
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=97.56 E-value=0.0041 Score=50.41 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
..++|.|.|+-.||||||++.|+..+|-.
T Consensus 7 F~K~VailG~ESsGKStLv~kLA~~fnt~ 35 (187)
T COG3172 7 FVKTVAILGGESSGKSTLVNKLANIFNTT 35 (187)
T ss_pred hheeeeeecCcccChHHHHHHHHHHhCCC
Confidence 45789999999999999999999999864
No 202
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.55 E-value=7e-05 Score=58.39 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
..++|.|++|+||||+++.|+..++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 478899999999999999999988543
No 203
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.53 E-value=8.9e-05 Score=59.03 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=24.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042 87 IMISGAPASGKGTQCELIKEKYGLVHI 113 (303)
Q Consensus 87 I~I~G~pGSGKSTla~~La~~lg~~~i 113 (303)
|+|.|+||+|||++++.|++.++..++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~ 28 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVI 28 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceE
Confidence 679999999999999999999987654
No 204
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.53 E-value=0.00059 Score=58.41 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=40.3
Q ss_pred CCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 022042 223 SPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQ 293 (303)
Q Consensus 223 ~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~ 293 (303)
.||......+||..|.-++++.+.+|++....+......-+.. -..+.+...+++...++...+..-..+
T Consensus 156 ~pps~~~~e~rl~~rgte~~~~l~~r~~sa~~e~~~~~~~g~~-d~~~~ns~~lee~~kel~~~~~~~~~~ 225 (231)
T KOG0707|consen 156 KPPSIKILEERLRARGTETEESLLKRLKSAEEEFEILENSGSF-DLVIVNSDRLEEAYKELEIFISSDDKE 225 (231)
T ss_pred cCCcchhHHHHhhccCcchHHHHHHHHHhhhhhhccccCCccc-cceecCCCchhhhhhhhhhhhhHHHHh
Confidence 3444444444444555677888888888555555544432211 233445478888888887777554443
No 205
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.49 E-value=0.0001 Score=63.19 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHI 113 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i 113 (303)
..-+++.||||+||||+|+.||+.+|..+.
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 346889999999999999999999986553
No 206
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.49 E-value=0.00045 Score=57.22 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGL 110 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~ 110 (303)
+++|+|++|||||++|..++...+.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~ 25 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGG 25 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3689999999999999999987653
No 207
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.0047 Score=61.03 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGL 110 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~ 110 (303)
.+..++|+|++|+||||+++.|++.+++
T Consensus 37 LpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 37 LHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3456789999999999999999999987
No 208
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.47 E-value=0.00011 Score=68.63 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=29.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAG 116 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d 116 (303)
|..|+|.||||+|||++|+.|++.++.+++.++
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd 79 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 79 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence 457999999999999999999999998887766
No 209
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.46 E-value=0.00015 Score=57.45 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=26.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
....+|+|.|..||||||+++.|++.+|..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 345689999999999999999999999863
No 210
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00033 Score=62.86 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=32.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l 118 (303)
+-++|+|+|+.|||||-|+--||.+|+..+|+.|.+
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkm 41 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKM 41 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccce
Confidence 457999999999999999999999999999988743
No 211
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.43 E-value=0.00021 Score=55.92 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...++|.|++|+|||++++.+++.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 3478899999999999999999987
No 212
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00017 Score=64.92 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=33.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l 118 (303)
.+.+|+|+||.+||||-+|-.||+++|..+||+|.+
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 467899999999999999999999999999999854
No 213
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.43 E-value=0.012 Score=56.71 Aligned_cols=152 Identities=11% Similarity=0.102 Sum_probs=84.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~ 160 (303)
...+.+|++.|..+|||....++|.+.++-..+.+-.+ +.+...+.-...+........
T Consensus 296 ~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~---------------------~~Pt~~E~~~~~lwRf~~~lP 354 (493)
T TIGR03708 296 RKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPI---------------------AAPTDEEKAQHYLWRFWRHIP 354 (493)
T ss_pred CCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeC---------------------CCcCHHHHcCcHHHHHHHhCC
Confidence 56789999999999999999999999885433322110 111111222222233333333
Q ss_pred CCCCcEEEcC-------------CCC------CHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCcee
Q 022042 161 SQENGWLLDG-------------YPR------SLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIY 218 (303)
Q Consensus 161 ~~~~~~Vldg-------------~p~------~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~ 218 (303)
..|...|+|. +-. ...++..|++ .....-+-+||+++.++..+|+.+|..+|.+.
T Consensus 355 ~~G~i~iFdRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~~r~~~p~k~--- 431 (493)
T TIGR03708 355 RRGRITIFDRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHIDKEEQLRRFEERENTPFKR--- 431 (493)
T ss_pred CCCeEEEEcCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEcCHHHHHHHHHHHhcCCccC---
Confidence 3344444443 211 1122222222 12233467899999999999999997655322
Q ss_pred cccCCCCCchHHHhhhccCCCCcHHH--HHHHHHHHHHHHHHHHHHhh---cceEEEcCCCC
Q 022042 219 HVKYSPPETDEIAARLTKRFDDTEEK--VKLRLKTHHHNVEAVLSLYE---DVTVEVNGSVN 275 (303)
Q Consensus 219 ~~~~~~p~~~~i~~rL~~r~~d~~e~--~~~r~~~~~~~~~~~~~~~~---~~~~~Id~~~s 275 (303)
...+++. ..+++..|...++..+..-. ..+++|.++.-
T Consensus 432 -------------------WK~t~~D~~~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~dK 474 (493)
T TIGR03708 432 -------------------YKITDEDWRNREKWDAYEDAVNDMIDRTSTIIAPWTLVEANDK 474 (493)
T ss_pred -------------------CcCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCCCh
Confidence 1222233 33456667666665554322 26788888753
No 214
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.42 E-value=0.00013 Score=66.99 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGL 110 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~ 110 (303)
.++++|.|||||||||+|+.|++.++.
T Consensus 78 r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999998854
No 215
>PLN02796 D-glycerate 3-kinase
Probab=97.42 E-value=0.00012 Score=66.81 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=31.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLL 119 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~ 119 (303)
..|.+|+|.|++||||||+++.|...+. ...|++|++.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 4678999999999999999999998874 3456776654
No 216
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.42 E-value=0.0041 Score=62.30 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
+..++|+|++|+||||+++.|++.+++.
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4567899999999999999999999864
No 217
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.41 E-value=0.0018 Score=52.84 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=26.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC-CceeehHHH
Q 022042 87 IMISGAPASGKGTQCELIKEKYG-LVHIAAGDL 118 (303)
Q Consensus 87 I~I~G~pGSGKSTla~~La~~lg-~~~i~~d~l 118 (303)
|+=++.+||||||++..|++-|| +-|+--|++
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI 34 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI 34 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence 44578999999999999999999 888855554
No 218
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.38 E-value=0.00016 Score=67.77 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=29.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD 117 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~ 117 (303)
|..|+|+||+|+||||+|+.|++.++.+++.+|.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 4689999999999999999999999887776653
No 219
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.34 E-value=0.00021 Score=65.66 Aligned_cols=38 Identities=42% Similarity=0.626 Sum_probs=31.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcee--ehHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHI--AAGDLL 119 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i--~~d~l~ 119 (303)
+.|..++|.||||||||.+|+.+++++|+.+| +..+++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~ 185 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE 185 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh
Confidence 55788999999999999999999999987654 444443
No 220
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=97.34 E-value=0.00068 Score=58.03 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
..+++.|+||+||||+|..+.++++
T Consensus 120 ~l~glag~pGtgkst~~a~v~~aWp 144 (323)
T KOG2702|consen 120 ELTGLAGRPGTGKSTRIAAVDNAWP 144 (323)
T ss_pred heeeeecCCCCcchhHHHHHHhhcc
Confidence 4799999999999999999998654
No 221
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.32 E-value=0.00019 Score=67.07 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=30.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLL 119 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~ 119 (303)
+|.+|+|.|+.||||||+++.|...+. ...|+.|++.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 689999999999999999999987662 4567777665
No 222
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.28 E-value=0.00027 Score=58.50 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022042 86 KIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l 108 (303)
.|+|+|.||+||||+.+.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 223
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.27 E-value=0.00031 Score=61.38 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=23.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..+..+|+|+|+||+||||+...|...|
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 3456799999999999999999999887
No 224
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00087 Score=63.83 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
+-|+=|+++||||+|||-||+.+|-+-|.+++.+
T Consensus 335 KLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~ 368 (752)
T KOG0734|consen 335 KLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYA 368 (752)
T ss_pred cCCCceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence 3456699999999999999999999999888764
No 225
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.25 E-value=0.00036 Score=62.88 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=30.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l 118 (303)
.+++|+|+||.|||||.+|-.||++ +..+||+|.+
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~ 37 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI 37 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence 3458999999999999999999999 4589998854
No 226
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.25 E-value=0.015 Score=56.93 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGL 110 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~ 110 (303)
+..++|+|++|+||||+|+.|++.+++
T Consensus 38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346789999999999999999999875
No 227
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.23 E-value=0.00036 Score=54.47 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=25.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
.+...+|++.|.-||||||+++.|++.+|..
T Consensus 12 l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 12 LKPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp HSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3556799999999999999999999999863
No 228
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.23 E-value=0.00028 Score=64.11 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~ 114 (303)
..|+|.|+||+||||+++.|++.+|.+++.
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~r 94 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVR 94 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence 468999999999999999999999987653
No 229
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.22 E-value=0.00039 Score=54.65 Aligned_cols=25 Identities=28% Similarity=0.591 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...++|.|++|+||||+++.+++.+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999987
No 230
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.22 E-value=0.00036 Score=57.80 Aligned_cols=28 Identities=14% Similarity=0.032 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
..+.+|.|+|++||||||+++.|...+.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 3466899999999999999999998773
No 231
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.22 E-value=0.011 Score=54.14 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
..++|.||+|+||||+++.+++.+.
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3578999999999999999999873
No 232
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.21 E-value=0.00028 Score=56.44 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
|++|.|.|+.|||||||++.|...
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCC
Confidence 568999999999999999999653
No 233
>PHA02244 ATPase-like protein
Probab=97.20 E-value=0.00069 Score=62.52 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLL 119 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~ 119 (303)
.-|+|.|++|+|||++|+.|+..+|.+++.+..+.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~ 154 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM 154 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh
Confidence 35788999999999999999999998888775443
No 234
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.19 E-value=0.00039 Score=63.72 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHI 113 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i 113 (303)
...|+|.|++|+||||+++.|++.+|..++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 468999999999999999999999998775
No 235
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0012 Score=60.19 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
.++-|.+.||||+|||-+|++++++-|..+|++
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv 158 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFINV 158 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence 446799999999999999999999998877755
No 236
>PRK09087 hypothetical protein; Validated
Probab=97.18 E-value=0.00084 Score=58.30 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=31.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRA 121 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~ 121 (303)
..++|.|++|||||++++.+++..+..+++.+++..+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~ 81 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSD 81 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchH
Confidence 4589999999999999999999999889988654433
No 237
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.18 E-value=0.00038 Score=61.76 Aligned_cols=25 Identities=24% Similarity=0.589 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...++|.||||+||||+|+.+++.+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999875
No 238
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.17 E-value=0.019 Score=55.33 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
.+.-++++|++|+||||+|+.||+.+++.
T Consensus 34 i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 34 IPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred CCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 34578899999999999999999988763
No 239
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.16 E-value=0.017 Score=57.22 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
+..++|+||+|+||||+|+.||+.+++.
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4578899999999999999999999864
No 240
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.13 E-value=0.00046 Score=61.32 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHI 113 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i 113 (303)
.-|+|.|+||+|||++|+.|++.+|.+++
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 35779999999999999999999987665
No 241
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.13 E-value=0.00053 Score=66.52 Aligned_cols=31 Identities=16% Similarity=0.374 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~ 114 (303)
..+++|+||+||||||..+.|++++|+.++.
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 3588999999999999999999999987653
No 242
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=97.12 E-value=0.0026 Score=58.66 Aligned_cols=108 Identities=19% Similarity=0.267 Sum_probs=68.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE 163 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~ 163 (303)
...+++.|+.|||||++...|.+. |..++++..+.+. .++.+|... ..++ .-..+...+...+..... .
T Consensus 141 ~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aeh---rGS~fG~~~-----~~qp-sQ~~Fe~~l~~~l~~~~~-~ 209 (345)
T PRK11784 141 FPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANH---RGSSFGRLG-----GPQP-SQKDFENLLAEALLKLDP-A 209 (345)
T ss_pred CceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhh---ccccccCCC-----CCCc-chHHHHHHHHHHHHcCCC-C
Confidence 356889999999999999999764 7788988776643 233343211 1111 122355556666666554 4
Q ss_pred CcEEEcC---------CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 164 NGWLLDG---------YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 164 ~~~Vldg---------~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
+.+++++ .|..+ +..+. -.-+|+|++|.+.+++|+.+-.
T Consensus 210 ~~i~vE~Es~~IG~~~lP~~l-----~~~m~--~~~~v~i~~~~e~Rv~~l~~~Y 257 (345)
T PRK11784 210 RPIVVEDESRRIGRVHLPEAL-----YEAMQ--QAPIVVVEAPLEERVERLLEDY 257 (345)
T ss_pred CeEEEEeccccccCccCCHHH-----HHHHh--hCCEEEEECCHHHHHHHHHHHh
Confidence 5677764 33222 22222 1248899999999999998765
No 243
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.11 E-value=0.00039 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Q 022042 87 IMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 87 I~I~G~pGSGKSTla~~La~~lg 109 (303)
|+|.|++|+|||++++.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988753
No 244
>COG3911 Predicted ATPase [General function prediction only]
Probab=97.10 E-value=0.00051 Score=54.85 Aligned_cols=30 Identities=20% Similarity=0.499 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHI 113 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i 113 (303)
++++++|+|.||+||||+...|++. |+..+
T Consensus 8 R~~~fIltGgpGaGKTtLL~aLa~~-Gfatv 37 (183)
T COG3911 8 RHKRFILTGGPGAGKTTLLAALARA-GFATV 37 (183)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHc-Cceee
Confidence 3468999999999999999999875 77654
No 245
>PF13245 AAA_19: Part of AAA domain
Probab=97.09 E-value=0.00062 Score=48.51 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=18.2
Q ss_pred CeEEEEEcCCCCCHH-HHHHHHHHHh
Q 022042 84 PLKIMISGAPASGKG-TQCELIKEKY 108 (303)
Q Consensus 84 ~~~I~I~G~pGSGKS-Tla~~La~~l 108 (303)
..+++|.|+|||||| |+++.++..+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 346778999999999 5555555544
No 246
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.09 E-value=0.023 Score=55.14 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGL 110 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~ 110 (303)
.+..++|+||||+||||+|+.|++.+++
T Consensus 35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 35 LGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3456789999999999999999999864
No 247
>PF05729 NACHT: NACHT domain
Probab=97.09 E-value=0.00049 Score=55.83 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022042 86 KIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l 108 (303)
+++|.|.+|+||||+++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 68899999999999999999877
No 248
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.09 E-value=0.00055 Score=63.08 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=29.7
Q ss_pred hhcccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 77 LASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 77 ~~~~~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
.+.......-.++-||||+||||+|+.|++..+..+.-+
T Consensus 41 r~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~ 79 (436)
T COG2256 41 RAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL 79 (436)
T ss_pred HHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEe
Confidence 333444444567899999999999999999998766544
No 249
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.06 E-value=0.00058 Score=64.20 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~ 114 (303)
.|.-|+|.||||+|||++|+.++..++..++.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~ 195 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIR 195 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEE
Confidence 34569999999999999999999999865543
No 250
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0025 Score=61.82 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
.+..|++.||||+|||.+|+.++..++..+++.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v 307 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISV 307 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEe
Confidence 345799999999999999999999887776654
No 251
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.06 E-value=0.0036 Score=53.78 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 022042 87 IMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 87 I~I~G~pGSGKSTla~~La~~l 108 (303)
-+|+|||||||||.|.-..+-|
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fl 26 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFL 26 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHH
Confidence 4699999999999997776654
No 252
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.06 E-value=0.021 Score=56.44 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
.+..++|+|++|+||||+++.|++.+++.
T Consensus 37 ~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 37 VAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 45678899999999999999999998764
No 253
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.007 Score=55.77 Aligned_cols=31 Identities=16% Similarity=0.392 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
+=|++.||||+|||-||+.++.+.|-.++++
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~tTFFNV 276 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECGTTFFNV 276 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence 4589999999999999999999998777665
No 254
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.04 E-value=0.00059 Score=60.63 Aligned_cols=31 Identities=29% Similarity=0.346 Sum_probs=27.0
Q ss_pred hcccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 78 ASATVEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 78 ~~~~~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+...++.+|+|+|+||+||||+...|..+|
T Consensus 45 ~p~tG~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 45 YPRTGNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred hhcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 4445567899999999999999999999988
No 255
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.04 E-value=0.033 Score=55.30 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
.+..++|+|++|+||||+++.|++.+++.
T Consensus 37 l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 37 LHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34578899999999999999999999863
No 256
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.03 E-value=0.0013 Score=64.81 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
++.+++||||.||||||+.+|++-||.++.+
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence 6889999999999999999999999988865
No 257
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.03 E-value=0.00042 Score=60.65 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.7
Q ss_pred EEcCCCCCHHHHHHHHHHHhC
Q 022042 89 ISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 89 I~G~pGSGKSTla~~La~~lg 109 (303)
|+||+||||||+|+.+.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999874
No 258
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.03 E-value=0.00069 Score=62.02 Aligned_cols=28 Identities=36% Similarity=0.461 Sum_probs=25.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..++.+|.|+|+|||||||++..|...+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999988776
No 259
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.01 E-value=0.0006 Score=64.38 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAG 116 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d 116 (303)
..|+|.||||+|||++|+.|++.++.+++.++
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id 140 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAIAD 140 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence 46889999999999999999999987776554
No 260
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.01 E-value=0.02 Score=58.56 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
-+..++|+|++|+||||+|+.|++.+++.
T Consensus 37 l~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 37 LHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 34567899999999999999999999764
No 261
>CHL00181 cbbX CbbX; Provisional
Probab=97.00 E-value=0.0012 Score=59.50 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
+..++|.|+||+||||+|+.+++.+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999875
No 262
>PHA03134 thymidine kinase; Provisional
Probab=96.99 E-value=0.076 Score=48.42 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
.-.+|.|.|+.|.||||.++.|+..
T Consensus 12 ~~~rvYlDG~~GvGKTT~~~~l~~~ 36 (340)
T PHA03134 12 RIVRIYLDGAYGIGKSTTGRVMASA 36 (340)
T ss_pred cEEEEEEeCCCcCCHHHHHHHHHHh
Confidence 3468999999999999999999864
No 263
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=96.99 E-value=0.0002 Score=57.82 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=19.3
Q ss_pred CC-CcEEEEEEcCHHHHHHHHhcCC
Q 022042 186 FQ-PDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 186 ~~-pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
.. ||++|||++|++++++|+.+|+
T Consensus 65 ~~~pdl~IYL~~~~e~~~~RI~kRg 89 (146)
T PF01712_consen 65 PKSPDLIIYLDASPETCLERIKKRG 89 (146)
T ss_dssp CHH-SEEEEEE--HHHHHHHHHHCT
T ss_pred hccCCeEEEEeCCHHHHHHHHHHhC
Confidence 45 9999999999999999999995
No 264
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.96 E-value=0.00044 Score=54.12 Aligned_cols=27 Identities=26% Similarity=0.533 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042 87 IMISGAPASGKGTQCELIKEKYGLVHI 113 (303)
Q Consensus 87 I~I~G~pGSGKSTla~~La~~lg~~~i 113 (303)
|+|.|+||.||||+++.||+.+|..+.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCcee
Confidence 679999999999999999999987654
No 265
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.96 E-value=0.017 Score=59.23 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
..+.-++|.|++|+||||+++.|++.|++.
T Consensus 35 ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 35 RINHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 334568899999999999999999999864
No 266
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.95 E-value=0.00093 Score=62.23 Aligned_cols=32 Identities=19% Similarity=0.407 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
|.-|+|.||||+|||++++.++..++..++.+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence 55699999999999999999999998766543
No 267
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.95 E-value=0.0022 Score=56.08 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAG 116 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d 116 (303)
.-.++|.|+||||||++|..++... | ..+++.+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 4589999999999999998765432 3 4556554
No 268
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.95 E-value=0.00087 Score=57.02 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
|..|+|+|++||||||+.+.|.+.+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999998875
No 269
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.95 E-value=0.0053 Score=62.50 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
.+.-|+|.||||||||++|+.|+..++..++.+
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v 518 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAV 518 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 345689999999999999999999998776654
No 270
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.93 E-value=0.00095 Score=62.80 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
.|.-|+|.||||+|||++++.++..++..++..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 356799999999999999999999998766544
No 271
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.93 E-value=0.0009 Score=56.79 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
|.+|++.||+|+||||.+-.||.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 5789999999999999999999877
No 272
>PRK04195 replication factor C large subunit; Provisional
Probab=96.93 E-value=0.00085 Score=64.90 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=28.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
+..++|.||||+||||+++.|++.+|+.++.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 45788999999999999999999999877654
No 273
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0096 Score=53.12 Aligned_cols=38 Identities=18% Similarity=0.345 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCce--eehHHHHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVH--IAAGDLLRAE 122 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~--i~~d~l~~~~ 122 (303)
.=|++.||||+|||-||+..|.+-|-.+ |+..+++-+.
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKW 206 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 206 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHH
Confidence 3599999999999999999999887544 4556666553
No 274
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.91 E-value=0.001 Score=54.51 Aligned_cols=25 Identities=28% Similarity=0.151 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
|++|.|+|++||||||+++.|...+
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999987
No 275
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.91 E-value=0.00093 Score=53.53 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l 108 (303)
++|.|+|+.+|||||+++.|.+.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998877
No 276
>PRK13695 putative NTPase; Provisional
Probab=96.90 E-value=0.00093 Score=55.40 Aligned_cols=24 Identities=42% Similarity=0.498 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l 108 (303)
|+|+|+|++|+||||+++.|+..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999987765
No 277
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.89 E-value=0.0012 Score=59.83 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCce
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVH 112 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~ 112 (303)
+..++|+||||+|||++++.+++.++...
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 34688999999999999999999987543
No 278
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.89 E-value=0.00091 Score=62.99 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
..|+|.||||+|||++|+.|++.++.+++..
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence 3789999999999999999999998776543
No 279
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.88 E-value=0.0015 Score=62.03 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.|.+|+++|++|+||||++..|+..|
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999999877
No 280
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.88 E-value=0.0074 Score=59.39 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=30.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-----C--CceeehHHHHHHHH
Q 022042 86 KIMISGAPASGKGTQCELIKEKY-----G--LVHIAAGDLLRAEI 123 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l-----g--~~~i~~d~l~~~~~ 123 (303)
.++|.|++|+|||.|++.++..+ | +.+++..+++.+..
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~ 360 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFI 360 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHH
Confidence 48999999999999999998865 2 36788877775543
No 281
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.001 Score=65.42 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=31.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCC--ceeehHHH
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGL--VHIAAGDL 118 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~--~~i~~d~l 118 (303)
..+.+++|+.||||.|||++++.+|+.+|- ..++++-+
T Consensus 347 ~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGv 386 (782)
T COG0466 347 KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGV 386 (782)
T ss_pred cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCcc
Confidence 345689999999999999999999999975 44555544
No 282
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.87 E-value=0.00091 Score=56.89 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=20.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIK 105 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La 105 (303)
.+.-+++|+||+||||||+.+.|.
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999884
No 283
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0028 Score=63.35 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAG 116 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d 116 (303)
+-|.=++|+||||+|||-||+.+|.+-|++++++.
T Consensus 342 KiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svS 376 (774)
T KOG0731|consen 342 KIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVS 376 (774)
T ss_pred cCcCceEEECCCCCcHHHHHHHHhcccCCceeeec
Confidence 34556899999999999999999999999988763
No 284
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.85 E-value=0.00092 Score=54.71 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
+-.|.|+||+||||||+.+.++.-
T Consensus 29 Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhc
Confidence 458899999999999999999864
No 285
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.84 E-value=0.0011 Score=56.41 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 86 KIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg 109 (303)
+|+|+||+||||||+...|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 688999999999999999888774
No 286
>PHA03135 thymidine kinase; Provisional
Probab=96.84 E-value=0.031 Score=50.95 Aligned_cols=24 Identities=13% Similarity=0.310 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
-.+|.|.|+.|+||||+++.|++.
T Consensus 10 ~~rIYlDG~~GvGKTT~~~~l~~~ 33 (343)
T PHA03135 10 LIRVYLDGPFGIGKTSMLNEMPDH 33 (343)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999885
No 287
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.84 E-value=0.00089 Score=62.57 Aligned_cols=23 Identities=43% Similarity=0.733 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022042 86 KIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l 108 (303)
=|+|.|+||+||||+|+.||+.|
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHH
Confidence 48899999999999999999988
No 288
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.011 Score=54.33 Aligned_cols=113 Identities=19% Similarity=0.255 Sum_probs=62.2
Q ss_pred hhcccCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCc-eeehHHHHH---------HHHHcCCcchHHHHHHHHcCCCc
Q 022042 77 LASATVEPLKIMISGAPASGKGTQCELIKEKY---GLV-HIAAGDLLR---------AEIAAGSENGKRAKEHMEKGQLV 143 (303)
Q Consensus 77 ~~~~~~~~~~I~I~G~pGSGKSTla~~La~~l---g~~-~i~~d~l~~---------~~~~~~~~~~~~i~~~~~~g~~~ 143 (303)
+.+...+|-+|.+.|.-|+||||.|-.||-.| |+. .+-..|.+| .....+-++. ..+...
T Consensus 94 ~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~y-------gsyte~ 166 (483)
T KOG0780|consen 94 LQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFY-------GSYTEA 166 (483)
T ss_pred cccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeE-------eccccc
Confidence 34455677899999999999999999999887 442 222223332 2222111111 111111
Q ss_pred ChHHHHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHH-----hCCCCcEEE-EEEcCH
Q 022042 144 PDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKK-----YGFQPDLFI-LLEVPE 198 (303)
Q Consensus 144 ~~~~~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~-----~~~~pd~vI-~L~~~~ 198 (303)
....+...=.++..+..+ .-+|+|--.|...+...|++ ....||.+| .+|++.
T Consensus 167 dpv~ia~egv~~fKke~f--dvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi 225 (483)
T KOG0780|consen 167 DPVKIASEGVDRFKKENF--DVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI 225 (483)
T ss_pred chHHHHHHHHHHHHhcCC--cEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 122222222333333332 45777876677666666655 356788765 456664
No 289
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.83 E-value=0.0014 Score=49.90 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIK 105 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La 105 (303)
..+++|.|++||||||+++.|.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999987
No 290
>PRK04328 hypothetical protein; Provisional
Probab=96.83 E-value=0.003 Score=55.70 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAG 116 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d 116 (303)
.-.++|.|+||||||++|..++... | ..+++.+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e 60 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE 60 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 3488999999999999998876542 2 3556653
No 291
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.82 E-value=0.0015 Score=56.33 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLL 119 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~ 119 (303)
..+..|+|.|++|+|||++++.+++... +.+++..++.
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 3456899999999999999999998752 4456665554
No 292
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.82 E-value=0.0011 Score=54.98 Aligned_cols=28 Identities=18% Similarity=0.437 Sum_probs=18.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...+..++|+|++|+|||++.+.+.+.+
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455789999999999999999888776
No 293
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.82 E-value=0.0013 Score=60.30 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCce
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVH 112 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~ 112 (303)
+..++|.||||+||||+|+.+++.++..+
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 45688999999999999999999998654
No 294
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.81 E-value=0.0013 Score=54.96 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh----CCceeehH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY----GLVHIAAG 116 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l----g~~~i~~d 116 (303)
+..|.|.||||||||++...+.+.+ .+.+|.-|
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~D 49 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGD 49 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEece
Confidence 3789999999999999987766655 55555444
No 295
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.80 E-value=0.0013 Score=59.06 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.-++|.|+||+||||+|+.+++.+
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999998888765
No 296
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.80 E-value=0.056 Score=53.25 Aligned_cols=30 Identities=17% Similarity=0.153 Sum_probs=25.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
..+..++|+|++|+||||+|+.|++.+++.
T Consensus 36 ~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 36 KIANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 345678899999999999999999998763
No 297
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.80 E-value=0.0018 Score=56.90 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAE 122 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~~~~ 122 (303)
.+|.+|++.|..||||||++++|-.++. ..+|++|-.+++.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~v 62 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNV 62 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcC
Confidence 4577999999999999999999988772 3567887666654
No 298
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.79 E-value=0.0013 Score=62.95 Aligned_cols=30 Identities=20% Similarity=0.469 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHI 113 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i 113 (303)
..+.+|+||+||||||..+.|++.+|+.++
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 110 SRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred ceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 358999999999999999999999998765
No 299
>PRK10646 ADP-binding protein; Provisional
Probab=96.79 E-value=0.0018 Score=52.46 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=26.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGL 110 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~ 110 (303)
+...+|++.|.-|+||||+++.|++.+|.
T Consensus 26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 33468999999999999999999999986
No 300
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.79 E-value=0.03 Score=55.79 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
+..++|+|++|+||||+|+.|++.+++.
T Consensus 38 ~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 38 HHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4457899999999999999999999874
No 301
>PTZ00202 tuzin; Provisional
Probab=96.78 E-value=0.0054 Score=57.88 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
+.+++|+|++|+||||+++.+...++..
T Consensus 286 privvLtG~~G~GKTTLlR~~~~~l~~~ 313 (550)
T PTZ00202 286 PRIVVFTGFRGCGKSSLCRSAVRKEGMP 313 (550)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCce
Confidence 4589999999999999999999888753
No 302
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.78 E-value=0.0013 Score=63.82 Aligned_cols=32 Identities=19% Similarity=0.455 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
+.-++|.||||+|||++++.|+...+.+++.+
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence 44688999999999999999999998776654
No 303
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.78 E-value=0.0017 Score=53.83 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGL 110 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~ 110 (303)
..++++||+|+|||.+|+.|++.+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 37889999999999999999999884
No 304
>PRK06620 hypothetical protein; Validated
Probab=96.77 E-value=0.0012 Score=56.88 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~ 114 (303)
..++|.|++|||||++++.+++..+..+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 357899999999999999999888765554
No 305
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.75 E-value=0.0016 Score=61.79 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
..+..++|.|+||+||||+|+.|++.++..++.+
T Consensus 34 ~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l 67 (413)
T PRK13342 34 GRLSSMILWGPPGTGKTTLARIIAGATDAPFEAL 67 (413)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3445688899999999999999999987766544
No 306
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.75 E-value=0.0039 Score=53.94 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~ 106 (303)
.-.++|.|+||+||||++..++.
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~ 42 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAY 42 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHH
Confidence 45899999999999999987764
No 307
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.74 E-value=0.0017 Score=61.80 Aligned_cols=32 Identities=16% Similarity=0.391 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~ 114 (303)
.+.-++|.||||+|||++++.++..++..++.
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~ 247 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLR 247 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE
Confidence 45578899999999999999999998766554
No 308
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.74 E-value=0.0014 Score=57.99 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
+.+++|.|++|+||||+++.+++.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999999875
No 309
>COG4240 Predicted kinase [General function prediction only]
Probab=96.74 E-value=0.0022 Score=54.88 Aligned_cols=41 Identities=34% Similarity=0.432 Sum_probs=32.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---C---CceeehHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY---G---LVHIAAGDLLRAE 122 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l---g---~~~i~~d~l~~~~ 122 (303)
.+|.+++|+||-||||||++-.|...+ | ...+|.||++..+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlth 94 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTH 94 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcch
Confidence 458999999999999999997776554 3 3568889887543
No 310
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.73 E-value=0.0016 Score=50.01 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022042 86 KIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l 108 (303)
+|+|.|.+|+||||+.+.|....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999998753
No 311
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.73 E-value=0.0012 Score=57.23 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
.+.-+|.|.||+||||||+.+.++--
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999863
No 312
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.0014 Score=64.52 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=31.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CceeehHHH
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYG--LVHIAAGDL 118 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg--~~~i~~d~l 118 (303)
+.+++++|+.||||.|||++++.+|+.+| |..+|++-+
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~ 474 (906)
T KOG2004|consen 435 SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGM 474 (906)
T ss_pred cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccc
Confidence 45678999999999999999999999997 455666544
No 313
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.73 E-value=0.0015 Score=53.97 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=25.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CC--ceeehH
Q 022042 86 KIMISGAPASGKGTQCELIKEKY---GL--VHIAAG 116 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l---g~--~~i~~d 116 (303)
+++++|++|+||||++..|+..+ |. .+++.|
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 67899999999999999998876 43 445555
No 314
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.72 E-value=0.0034 Score=54.27 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh------CCceeehHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY------GLVHIAAGDLL 119 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l------g~~~i~~d~l~ 119 (303)
+-.++|+|+||+|||++|..++... ++.++++++-.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPP 60 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-H
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCH
Confidence 3589999999999999998765332 34566664433
No 315
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=96.71 E-value=0.0051 Score=55.92 Aligned_cols=132 Identities=17% Similarity=0.278 Sum_probs=69.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh---CCceeehH-HHHHHHHHcCCcchHHHHHHHHcCCCcChHH--HHHHHHHHHc
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY---GLVHIAAG-DLLRAEIAAGSENGKRAKEHMEKGQLVPDEI--VVTMVKERLS 157 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d-~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~--~~~~l~~~l~ 157 (303)
.-.|+++|.+|+||||++-.|.+.+ |++.+++| +-++.-+.. +-...+++. -.+.+.+ +.
T Consensus 50 gctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~k-------------nlgfs~edreenirriae-va 115 (627)
T KOG4238|consen 50 GCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNK-------------NLGFSPEDREENIRRIAE-VA 115 (627)
T ss_pred ceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhh-------------ccCCCchhHHHHHHHHHH-HH
Confidence 3579999999999999999887765 66666553 233332211 111111111 1111111 11
Q ss_pred CCCCCCCc-EEEcC----CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCC-CCCCce-----ecccCCCCC
Q 022042 158 QPDSQENG-WLLDG----YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLD-PVTGKI-----YHVKYSPPE 226 (303)
Q Consensus 158 ~~~~~~~~-~Vldg----~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~-~~~g~~-----~~~~~~~p~ 226 (303)
.+-. ..| +-+.. |..+...+..+-+....|.+-+|++++.++|.+|-.+--+. ...|.+ ....|.+|.
T Consensus 116 klfa-daglvcitsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkaragei~gftgids~ye~pe 194 (627)
T KOG4238|consen 116 KLFA-DAGLVCITSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAGEIKGFTGIDSDYEKPE 194 (627)
T ss_pred HHHh-cCCceeeehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhccccccccccccccCCCC
Confidence 1111 233 33344 33344444445444556778999999999999886432111 111222 234577777
Q ss_pred chHH
Q 022042 227 TDEI 230 (303)
Q Consensus 227 ~~~i 230 (303)
++++
T Consensus 195 ~~e~ 198 (627)
T KOG4238|consen 195 TPER 198 (627)
T ss_pred ChhH
Confidence 7664
No 316
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.71 E-value=0.002 Score=55.77 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-----CCceeehHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY-----GLVHIAAGDL 118 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l-----g~~~i~~d~l 118 (303)
..++|.|++|+|||++++.++... .+.+++..+.
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 468899999999999999999876 4566665544
No 317
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.71 E-value=0.0019 Score=55.62 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=26.3
Q ss_pred hcccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 78 ASATVEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 78 ~~~~~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
......++.++|+||||+||||-+..||..+
T Consensus 42 ia~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 42 IAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 3344567789999999999999999999987
No 318
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.71 E-value=0.11 Score=51.38 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
.+..++|+|++|+||||+|+.|++.+++.
T Consensus 34 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 34 INHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 34567899999999999999999999864
No 319
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.71 E-value=0.08 Score=50.02 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-----C--CceeehHHHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY-----G--LVHIAAGDLLRA 121 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l-----g--~~~i~~d~l~~~ 121 (303)
..++|.|++|+|||++++.++..+ + +.+++..++..+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~ 180 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND 180 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH
Confidence 357899999999999999998865 2 456777776554
No 320
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.70 E-value=0.0013 Score=54.81 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=23.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh---C--CceeehH
Q 022042 87 IMISGAPASGKGTQCELIKEKY---G--LVHIAAG 116 (303)
Q Consensus 87 I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d 116 (303)
++|.|+||+|||+++..++... | +.+++++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 6799999999999998876643 3 4566654
No 321
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.68 E-value=0.0024 Score=51.23 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=26.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGL 110 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~ 110 (303)
-+.+.+|++.|.-||||||+++.|++.+|.
T Consensus 22 l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 22 LKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 345679999999999999999999999984
No 322
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.67 E-value=0.0027 Score=61.41 Aligned_cols=88 Identities=16% Similarity=0.128 Sum_probs=50.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCc---------ChHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLV---------PDEI 147 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~---------~~~~ 147 (303)
.+.-.++|.|+||+||||++-.++... | ..+++.++-..+.......+|-.+.++...|... ..+.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~ 340 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLED 340 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHH
Confidence 345689999999999999998888754 3 4566654333333222223343444444444211 1133
Q ss_pred HHHHHHHHHcCCCCCCCcEEEcCC
Q 022042 148 VVTMVKERLSQPDSQENGWLLDGY 171 (303)
Q Consensus 148 ~~~~l~~~l~~~~~~~~~~Vldg~ 171 (303)
....+.+.+.+.. ...+|+|+.
T Consensus 341 ~~~~i~~~i~~~~--~~~vvIDsi 362 (484)
T TIGR02655 341 HLQIIKSEIADFK--PARIAIDSL 362 (484)
T ss_pred HHHHHHHHHHHcC--CCEEEEcCH
Confidence 4455555554433 256899984
No 323
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.67 E-value=0.0023 Score=49.91 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=26.1
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 80 ATVEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...+|+++.+.|++|+|||.+++.||+.+
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 45678899999999999999999999984
No 324
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.67 E-value=0.0047 Score=53.76 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAG 116 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d 116 (303)
+-+++|.|+|||||||++..++... | +.+++.+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 4588999999999999999986543 3 3556654
No 325
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.66 E-value=0.0017 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~ 106 (303)
..+|++.|++|+||||+++.|..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999864
No 326
>PHA03138 thymidine kinase; Provisional
Probab=96.66 E-value=0.021 Score=52.09 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
-.+|.|.|+.|+||||+++.+.+.+
T Consensus 12 ~~riYleG~~GvGKTT~~~~~l~~~ 36 (340)
T PHA03138 12 ILRIYLDGAFGIGKTTAAEAFLHGF 36 (340)
T ss_pred EEEEEEECCCCcCHHhHHHHHHHhh
Confidence 3689999999999999998887654
No 327
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.65 E-value=0.0022 Score=55.99 Aligned_cols=33 Identities=6% Similarity=0.006 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGD 117 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~ 117 (303)
..++|.||+|+|||++++.++.... ..++++++
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 4788999999999999999988753 45666654
No 328
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.64 E-value=0.002 Score=52.03 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=26.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAG 116 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d 116 (303)
..=|+|+|++|+||||+|..|.++ |+.+++-|
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD 45 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR-GHRLVADD 45 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECC
Confidence 456899999999999999999775 76666444
No 329
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.63 E-value=0.0018 Score=55.84 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
.+.-+++|.||+||||||+...|.-
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3455899999999999999998864
No 330
>PRK06893 DNA replication initiation factor; Validated
Probab=96.63 E-value=0.0026 Score=55.26 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-----CCceeehH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY-----GLVHIAAG 116 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l-----g~~~i~~d 116 (303)
+.++|.|++|+|||++++.++..+ +..++++.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 468899999999999999999875 45566553
No 331
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.63 E-value=0.0023 Score=43.54 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 022042 86 KIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~ 107 (303)
+.+|+|+.||||||+...+.--
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999888543
No 332
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.63 E-value=0.0016 Score=52.39 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022042 86 KIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l 108 (303)
+++|.|++|+||||++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998876
No 333
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.63 E-value=0.0057 Score=53.56 Aligned_cols=38 Identities=16% Similarity=0.385 Sum_probs=31.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh--HHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA--GDLLRA 121 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~--d~l~~~ 121 (303)
|+.|++.||||+|||-+|+.||.+.+.+++.+ ..++-+
T Consensus 151 PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 57899999999999999999999998776654 444444
No 334
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.62 E-value=0.0022 Score=54.81 Aligned_cols=27 Identities=22% Similarity=0.275 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
.+++|+|+|++||||||+.+.|.+.++
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999999988754
No 335
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.62 E-value=0.085 Score=44.11 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGL 110 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~ 110 (303)
..+..++|.|++|+||||+++.+++.+..
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34567899999999999999999998753
No 336
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.058 Score=50.79 Aligned_cols=28 Identities=14% Similarity=0.304 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
+.-++|.||+|+||||+|..|++.+.+.
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4568899999999999999999998664
No 337
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.61 E-value=0.048 Score=54.00 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
+..++|.|++|+||||+|+.|++.+++.
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 5678899999999999999999999763
No 338
>PRK14974 cell division protein FtsY; Provisional
Probab=96.61 E-value=0.0022 Score=58.86 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+|.+|+|+|++|+||||++..|+..+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999888888765
No 339
>PRK13768 GTPase; Provisional
Probab=96.60 E-value=0.0021 Score=56.85 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
+++|+|.|++|+||||++..++..+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 340
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.60 E-value=0.15 Score=47.00 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
.+..++|.|++|+||||+++.|++.+...
T Consensus 35 ~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 35 IAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34578899999999999999999998543
No 341
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.59 E-value=0.0021 Score=57.36 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
|++|.|+|.+|||||||+..|+..|
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRL 25 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999988
No 342
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.011 Score=58.27 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=31.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCceeehH--HHHHHH
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAG--DLLRAE 122 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d--~l~~~~ 122 (303)
-|++.||||||||-++..++...++.+|++. +++-++
T Consensus 703 giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 703 GILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred ceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 5889999999999999999999999999873 444443
No 343
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.58 E-value=0.0025 Score=56.95 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.++.+|+++|++|+||||.+..||..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 346789999999999999999998877
No 344
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.57 E-value=0.002 Score=52.54 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022042 86 KIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l 108 (303)
+|+|+|++||||||++..|...+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999876
No 345
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.57 E-value=0.0025 Score=58.19 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.++.+|+|+|++|+||||++..|+..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 356799999999999999999999877
No 346
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.56 E-value=0.0026 Score=57.69 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=24.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...+.+|+|+|++||||||++..|+..+
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999988865
No 347
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.55 E-value=0.0019 Score=59.10 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
..-+++|.||+||||||+.+.||-
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 445899999999999999999974
No 348
>PRK08116 hypothetical protein; Validated
Probab=96.54 E-value=0.022 Score=50.76 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRA 121 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~~ 121 (303)
.-++|.|++|+|||.|+..+++.+ | +.+++..+++..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 358899999999999999999976 3 356777777654
No 349
>CHL00176 ftsH cell division protein; Validated
Probab=96.54 E-value=0.0026 Score=63.29 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
+.-|+|.||||+|||++|+.|+...+.+++.+
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 45699999999999999999999998777654
No 350
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.54 E-value=0.0091 Score=50.60 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=24.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---C--CceeehH
Q 022042 86 KIMISGAPASGKGTQCELIKEKY---G--LVHIAAG 116 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d 116 (303)
-+++.||.||||||.|..+-++- | +.+++.|
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLD 40 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLD 40 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecC
Confidence 46799999999999999998764 2 3555554
No 351
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.17 Score=44.15 Aligned_cols=110 Identities=19% Similarity=0.187 Sum_probs=64.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~ 160 (303)
.....+|++.|-.++||.-..+++.+.+|-..+.+-.+ ..+.+.+.-...+...+....
T Consensus 71 ~~~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval---------------------~aPt~~E~~qwY~qRy~~~lP 129 (270)
T COG2326 71 TGQRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVAL---------------------PAPTDRERGQWYFQRYVAHLP 129 (270)
T ss_pred cCCeEEEEEecccccCCCchhHHHhhhcCCceeEEeec---------------------CCCChHhhccHHHHHHHHhCC
Confidence 34557899999999999999999999996433211110 111111222222333444445
Q ss_pred CCCCcEEEc-------------CCCCCHHHHHH-------HHHh---CCCCcEEEEEEcCHHHHHHHHhcCCCCC
Q 022042 161 SQENGWLLD-------------GYPRSLSQATA-------LKKY---GFQPDLFILLEVPEDTLVERVVGRRLDP 212 (303)
Q Consensus 161 ~~~~~~Vld-------------g~p~~~~~~~~-------l~~~---~~~pd~vI~L~~~~e~~~~Rl~~R~~~~ 212 (303)
..|..+|+| || .+..|.+. |++. ....-+-+||+++.++-.+|+..|..+|
T Consensus 130 a~GeiviFdRSwYnr~gVeRVmGf-ct~~q~~rfl~eip~FE~mL~~~Gi~l~Kfwl~Is~eeQ~~RF~~R~~dP 203 (270)
T COG2326 130 AAGEIVIFDRSWYNRAGVERVMGF-CTPKQYKRFLREIPEFERMLVESGIILVKFWLSISREEQLERFLERRNDP 203 (270)
T ss_pred CCCeEEEechhhccccCeeecccc-CCHHHHHHHHHHhhHHHHHHHhCCeEEEEEEEeCCHHHHHHHHHHHhcCH
Confidence 445556655 34 23332222 2221 1123357899999999999999997654
No 352
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.53 E-value=0.0022 Score=62.29 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+.+++++.||||+||||+++.|++.+
T Consensus 101 ~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 101 EKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHH
Confidence 455799999999999999999999865
No 353
>PRK12377 putative replication protein; Provisional
Probab=96.53 E-value=0.0041 Score=54.70 Aligned_cols=38 Identities=21% Similarity=0.462 Sum_probs=30.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRAE 122 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~~~ 122 (303)
..++|.|++|+|||+++..|+..+ | +.++++.+++...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 468899999999999999999887 3 3567777776543
No 354
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.52 E-value=0.0024 Score=56.43 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=23.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
-+++.||||-||||+|..+|.++|..
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 68899999999999999999999753
No 355
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.52 E-value=0.0047 Score=51.56 Aligned_cols=40 Identities=28% Similarity=0.458 Sum_probs=31.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRAE 122 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~~~ 122 (303)
....++|.|++|+|||.+|..++.++ | ..+++..+++...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 34679999999999999999998765 3 4678888888764
No 356
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.51 E-value=0.0026 Score=59.42 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
..|.+|.|+|.+||||||+++.|.+++.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 3578999999999999999999998875
No 357
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.50 E-value=0.0026 Score=53.45 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.....++|+|++||||||+.+.|...+
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345689999999999999999998765
No 358
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.50 E-value=0.0022 Score=62.00 Aligned_cols=29 Identities=17% Similarity=0.374 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
.|.-|+|.||||+|||++++.+++.++..
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 35679999999999999999999998643
No 359
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.50 E-value=0.003 Score=60.80 Aligned_cols=27 Identities=15% Similarity=0.322 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGL 110 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~ 110 (303)
+..+++.||||+||||+|+.|++.+++
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 345889999999999999999999875
No 360
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.49 E-value=0.0024 Score=55.19 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
++-.++|.|.+||||||+++.|+-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 455899999999999999999975
No 361
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.47 E-value=0.0033 Score=58.59 Aligned_cols=28 Identities=21% Similarity=0.270 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGL 110 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~ 110 (303)
.+..++|+||+|+||||+|+.+++.+++
T Consensus 37 ~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 37 IHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 3456789999999999999999999875
No 362
>PRK06526 transposase; Provisional
Probab=96.47 E-value=0.0037 Score=55.21 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---CC--ceeehHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY---GL--VHIAAGDLLRA 121 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l---g~--~~i~~d~l~~~ 121 (303)
....++|.||+|+|||+++..|+... |. .++++.+++..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~ 140 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR 140 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence 34578999999999999999998764 33 34555555544
No 363
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.44 E-value=0.22 Score=48.22 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGL 110 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~ 110 (303)
+..++|+|++|+||||+|+.+++.+++
T Consensus 38 ~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 38 SHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 446789999999999999999999875
No 364
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.44 E-value=0.0021 Score=50.70 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|+|+.||||||+.+.|+..+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 34589999999999999999997654
No 365
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.43 E-value=0.0028 Score=48.58 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 022042 86 KIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~ 106 (303)
.|+|.|.+|+||||+.+.|..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999974
No 366
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.43 E-value=0.0033 Score=60.10 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
+..++|+||+|+||||+|+.|++.+++.
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4468899999999999999999999864
No 367
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.42 E-value=0.0033 Score=56.45 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
++.+|+|+||.|+||||++..|+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999998765
No 368
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.0052 Score=56.04 Aligned_cols=43 Identities=21% Similarity=0.453 Sum_probs=33.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceee--hHHHHHHHHHcC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIA--AGDLLRAEIAAG 126 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~--~d~l~~~~~~~~ 126 (303)
|+=|++.||||+|||-+|+..|.+.+..+|- -.+++++++-.+
T Consensus 185 PKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEG 229 (406)
T COG1222 185 PKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEG 229 (406)
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccc
Confidence 3458899999999999999999999876654 467777765544
No 369
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.0033 Score=56.48 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=27.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAG 116 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d 116 (303)
.|++.||.|||||-+|+-||+.++.++-=+|
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~LnVPFaiAD 129 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKILNVPFAIAD 129 (408)
T ss_pred cEEEECCCCCcHHHHHHHHHHHhCCCeeecc
Confidence 7999999999999999999999998775443
No 370
>PRK09183 transposase/IS protein; Provisional
Probab=96.41 E-value=0.0052 Score=54.49 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh---CC--ceeehHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY---GL--VHIAAGDLLR 120 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l---g~--~~i~~d~l~~ 120 (303)
...++|.|++|+|||+++..|+... |. .+++..+++.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~ 143 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL 143 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH
Confidence 4578899999999999999997653 33 4556555553
No 371
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.41 E-value=0.003 Score=53.04 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999997543
No 372
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.41 E-value=0.003 Score=51.67 Aligned_cols=25 Identities=32% Similarity=0.216 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
|+++.|+|..+||||||.+.|..++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L 26 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKL 26 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHH
Confidence 5789999999999999999998887
No 373
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.40 E-value=0.0039 Score=45.45 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=25.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CCceeehH
Q 022042 86 KIMISGAPASGKGTQCELIKEKY---GLVHIAAG 116 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d 116 (303)
+|++.|..|+||||++..|+..+ |...+-.|
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 36799999999999999999987 55555444
No 374
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.39 E-value=0.0027 Score=54.77 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD 117 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~ 117 (303)
.+..++|.|+||+||||+|+.|+. ...+++.|.
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~ 43 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDM 43 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC--CCEEEeccc
Confidence 356799999999999999999963 245555554
No 375
>PRK04296 thymidine kinase; Provisional
Probab=96.38 E-value=0.0034 Score=52.95 Aligned_cols=24 Identities=33% Similarity=0.236 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+++++|++|+||||++..++.++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Confidence 588999999999999998888876
No 376
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0025 Score=59.62 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=26.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 87 IMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 87 I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
.++.||||+||||+..++|..+++.++++
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~ydIydL 266 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLNYDIYDL 266 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence 66999999999999999999999877654
No 377
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.36 E-value=0.004 Score=56.62 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCce
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVH 112 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~ 112 (303)
.+..+++.|++|+||||+++.|++.++..+
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence 345777799999999999999999886543
No 378
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.36 E-value=0.0033 Score=54.00 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999998654
No 379
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.36 E-value=0.0032 Score=53.98 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998654
No 380
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.36 E-value=0.0038 Score=63.88 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHI 113 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i 113 (303)
++..+++.||||+|||++|+.|++.++..++
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~ 376 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFV 376 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeE
Confidence 3458999999999999999999999976654
No 381
>PLN03025 replication factor C subunit; Provisional
Probab=96.35 E-value=0.0037 Score=57.13 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+.++|.||||+||||+++.+++.+
T Consensus 34 ~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 34 MPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3457799999999999999999987
No 382
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.33 E-value=0.0035 Score=55.17 Aligned_cols=27 Identities=22% Similarity=0.103 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
++..+++|.||.||||||+.+.|+.-+
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 456799999999999999999998865
No 383
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.33 E-value=0.0035 Score=53.61 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44589999999999999999998654
No 384
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.33 E-value=0.0042 Score=55.65 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
....+|.|+|+||||||||.+.|.+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999988875
No 385
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.33 E-value=0.0036 Score=63.71 Aligned_cols=32 Identities=22% Similarity=0.474 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~ 114 (303)
.+.-|+|.|+||+||||+++.|+..++..++.
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~ 242 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFIS 242 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEE
Confidence 34679999999999999999999999876554
No 386
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.32 E-value=0.0037 Score=53.39 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999997644
No 387
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.32 E-value=0.0031 Score=58.02 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
+.-+++|.||+||||||+.+.||-
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 345889999999999999999985
No 388
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.31 E-value=0.018 Score=55.17 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=29.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-----C--CceeehHHHHHHH
Q 022042 86 KIMISGAPASGKGTQCELIKEKY-----G--LVHIAAGDLLRAE 122 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l-----g--~~~i~~d~l~~~~ 122 (303)
-++|.|++|+|||++++.++.++ + +.+++..++..+.
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~ 193 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDF 193 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 48899999999999999999886 2 3467777765543
No 389
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0032 Score=60.97 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
-=|+++||||||||-+|+..|.+-|+-+|++
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEag~NFisV 576 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEAGANFISV 576 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhccCceEee
Confidence 3588999999999999999999988877775
No 390
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.30 E-value=0.0037 Score=53.49 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999997643
No 391
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.29 E-value=0.0043 Score=60.08 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
.+.-++++|++|+||||+|+.|++.+++.
T Consensus 42 i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 42 LAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 34578899999999999999999999864
No 392
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.28 E-value=0.004 Score=51.78 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|+.||||||+.+.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999997543
No 393
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.28 E-value=0.0042 Score=53.17 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=17.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...+.+|.||||+||||+...+...+
T Consensus 16 ~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 16 SNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp SSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCChHHHHHHHHHHh
Confidence 33368899999999997666665554
No 394
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=96.27 E-value=0.0043 Score=53.82 Aligned_cols=25 Identities=32% Similarity=0.219 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
|++|.|+|++||||||++..|+++|
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L 25 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNL 25 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHH
Confidence 4589999999999999999999888
No 395
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.004 Score=53.15 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999998643
No 396
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.27 E-value=0.11 Score=49.74 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
+..++|.|++|+||||+|+.+++.+.+.
T Consensus 39 ~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 39 AHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 4568899999999999999999998653
No 397
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.26 E-value=0.0041 Score=53.51 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999997543
No 398
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.25 E-value=0.055 Score=54.44 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
+..+++.||+|+||||+|+.||+.+++.
T Consensus 40 ~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 40 SHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 4567899999999999999999998764
No 399
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=96.25 E-value=0.027 Score=45.98 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=24.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHI 113 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i 113 (303)
+.|+|+|+.-||||+.|+.|+...+...+
T Consensus 1 ~~ilvtGgaRSGKS~~AE~la~~~~~~v~ 29 (175)
T COG2087 1 MMILVTGGARSGKSSFAEALAGESGGQVL 29 (175)
T ss_pred CeEEEecCccCCchHHHHHHHHhhCCceE
Confidence 46899999999999999999998665443
No 400
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.25 E-value=0.0042 Score=53.46 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 401
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.0041 Score=54.11 Aligned_cols=26 Identities=31% Similarity=0.279 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998654
No 402
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.24 E-value=0.0042 Score=53.70 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+.+++|.|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45689999999999999999998765
No 403
>PRK08181 transposase; Validated
Probab=96.24 E-value=0.0078 Score=53.60 Aligned_cols=40 Identities=20% Similarity=0.374 Sum_probs=31.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRAE 122 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~~~ 122 (303)
....++|.|++|+|||.++..|+.+. | +.++++.+++...
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 34579999999999999999998654 4 4567777777654
No 404
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.24 E-value=0.0042 Score=53.11 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999997643
No 405
>PHA03133 thymidine kinase; Provisional
Probab=96.23 E-value=0.082 Score=48.53 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
.-.+|.|.|+.|.||||.++.+...++
T Consensus 39 ~~~rvYlDG~~GvGKTTt~~~l~~a~~ 65 (368)
T PHA03133 39 ALLRIYVDGPHGLGKTTTAAALAAALG 65 (368)
T ss_pred eEEEEEEeCCCcCCHHHHHHHHHHhhC
Confidence 336899999999999999988888875
No 406
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.23 E-value=0.0042 Score=52.85 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999997643
No 407
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.23 E-value=0.0039 Score=53.25 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022042 86 KIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l 108 (303)
+++|.|+.||||||+.+.|+..+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 88999999999999999997543
No 408
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.23 E-value=0.0048 Score=53.84 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..+.+++|.|++||||||++..|...+
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 345689999999999999998887765
No 409
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.23 E-value=0.0039 Score=54.18 Aligned_cols=26 Identities=23% Similarity=0.125 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 45689999999999999999997643
No 410
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.22 E-value=0.0044 Score=52.97 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 411
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.22 E-value=0.011 Score=57.28 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH----hC--CceeehH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEK----YG--LVHIAAG 116 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~----lg--~~~i~~d 116 (303)
.-.++|.|+|||||||+|..++-+ +| ..+|+.+
T Consensus 21 g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 21 GRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 458999999999999999987432 23 4566654
No 412
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.22 E-value=0.0043 Score=52.71 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998654
No 413
>PRK06921 hypothetical protein; Provisional
Probab=96.22 E-value=0.011 Score=52.72 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh----CC--ceeehHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY----GL--VHIAAGDLLRA 121 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l----g~--~~i~~d~l~~~ 121 (303)
...++|.|++|+|||+++..++..+ |. .+++..+++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence 4578999999999999999998865 33 35666555543
No 414
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.22 E-value=0.0039 Score=53.33 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45689999999999999999997643
No 415
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.21 E-value=0.0043 Score=51.77 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44589999999999999999998654
No 416
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.0044 Score=54.01 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+.-+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999998644
No 417
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.20 E-value=0.0048 Score=56.62 Aligned_cols=30 Identities=20% Similarity=0.414 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHI 113 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i 113 (303)
...++|.|+||+|||++++.+|+.+|..++
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 346889999999999999999999986554
No 418
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.20 E-value=0.0045 Score=53.80 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44589999999999999999998644
No 419
>PHA02624 large T antigen; Provisional
Probab=96.20 E-value=0.0059 Score=59.64 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
+...|+|.||||+||||++..|.+.+|...+++
T Consensus 430 Kk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV 462 (647)
T PHA02624 430 KRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV 462 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence 345899999999999999999999996666665
No 420
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.0044 Score=53.36 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999997643
No 421
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.20 E-value=0.0048 Score=50.77 Aligned_cols=26 Identities=15% Similarity=0.374 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+++.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44589999999999999999997654
No 422
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.19 E-value=0.0046 Score=53.15 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999998644
No 423
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.19 E-value=0.0046 Score=52.81 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999998643
No 424
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.18 E-value=0.0048 Score=52.10 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44589999999999999999997654
No 425
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.18 E-value=0.0049 Score=51.25 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..+-+++|.|+.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 345689999999999999999998654
No 426
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.18 E-value=0.0044 Score=52.72 Aligned_cols=22 Identities=36% Similarity=0.383 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~ 106 (303)
.+++|+|+.||||||+.+.|+-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 5889999999999999999974
No 427
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.18 E-value=0.0046 Score=54.01 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 44589999999999999999998644
No 428
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.17 E-value=0.005 Score=53.61 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=18.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~ 106 (303)
.-+++|.|++||||||+|..++-
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~ 46 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAY 46 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34889999999999999855544
No 429
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.17 E-value=0.0045 Score=53.43 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998644
No 430
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.17 E-value=0.0048 Score=51.40 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
..-+++|.|+.||||||+.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 345899999999999999998853
No 431
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.17 E-value=0.0046 Score=50.64 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
...|+|.|++||||||+.+.|...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 458999999999999999999653
No 432
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.005 Score=50.94 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999997643
No 433
>PRK10867 signal recognition particle protein; Provisional
Probab=96.16 E-value=0.0057 Score=58.09 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=26.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh----CC--ceeehH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY----GL--VHIAAG 116 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l----g~--~~i~~d 116 (303)
..|.+|+++|++||||||.+-.||..| |. ..++.|
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 346799999999999999887777654 43 456665
No 434
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.16 E-value=0.0061 Score=52.35 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
+..++.|.|+|||||||+|..++...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998765
No 435
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.16 E-value=0.082 Score=45.60 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=29.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-----C--CceeehHHHHHHHH
Q 022042 86 KIMISGAPASGKGTQCELIKEKY-----G--LVHIAAGDLLRAEI 123 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l-----g--~~~i~~d~l~~~~~ 123 (303)
.++|.|++|+|||.|.+.++.++ + +.+++.+++.....
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~ 80 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFA 80 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHH
Confidence 47899999999999999998764 2 45788877776543
No 436
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.16 E-value=0.0048 Score=52.97 Aligned_cols=26 Identities=35% Similarity=0.225 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...+++|.|+.||||||+.+.|+.-+
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 44689999999999999999998643
No 437
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.16 E-value=0.023 Score=51.81 Aligned_cols=38 Identities=29% Similarity=0.207 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLR 120 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~ 120 (303)
+..++.|.|+|||||||+|-.++... | +.+|+......
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD 96 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhH
Confidence 34589999999999999998876654 2 35676654433
No 438
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.16 E-value=0.0059 Score=57.76 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+|.+|+++|++|+||||.+..||..|
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999999876
No 439
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.16 E-value=0.0057 Score=56.27 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
...|+|.||||+|||.+|-.+++.||
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eLG 75 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKELG 75 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHCT
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHhC
Confidence 57899999999999999999999997
No 440
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.0048 Score=53.82 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 441
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.15 E-value=0.0058 Score=51.06 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+.-+++|+|++||||||+.+.|....
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 344589999999999999999997754
No 442
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.15 E-value=0.005 Score=52.96 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998643
No 443
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.15 E-value=0.0049 Score=53.48 Aligned_cols=26 Identities=23% Similarity=0.137 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999998754
No 444
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.15 E-value=0.005 Score=53.63 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999998654
No 445
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.14 E-value=0.0037 Score=54.05 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 022042 87 IMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 87 I~I~G~pGSGKSTla~~La~~l 108 (303)
|+|.|+|||||||+.+.+.+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5799999999999999998874
No 446
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.14 E-value=0.11 Score=52.56 Aligned_cols=88 Identities=23% Similarity=0.234 Sum_probs=54.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh----CCceeehHH-------HHHHHH---H-cCCcchHHHHHHHHcCCCcChHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY----GLVHIAAGD-------LLRAEI---A-AGSENGKRAKEHMEKGQLVPDEIVV 149 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l----g~~~i~~d~-------l~~~~~---~-~~~~~~~~i~~~~~~g~~~~~~~~~ 149 (303)
..++|.-|.|.||||++-.+++.. ++..++.|+ ++...+ . .-...+.....+..+...++-..+.
T Consensus 38 RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~ 117 (894)
T COG2909 38 RLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLL 117 (894)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHH
Confidence 489999999999999998886533 456676651 222221 1 1234555555666666766666665
Q ss_pred HHHHHHHcCCCCCCCcEEEcCCCC
Q 022042 150 TMVKERLSQPDSQENGWLLDGYPR 173 (303)
Q Consensus 150 ~~l~~~l~~~~~~~~~~Vldg~p~ 173 (303)
..+...+..... --.+|+|+|.+
T Consensus 118 ~~L~~Ela~~~~-pl~LVlDDyHl 140 (894)
T COG2909 118 SSLLNELASYEG-PLYLVLDDYHL 140 (894)
T ss_pred HHHHHHHHhhcC-ceEEEeccccc
Confidence 555555555332 12578899764
No 447
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.14 E-value=0.0055 Score=57.00 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
+..+|+|.||+|+||||++..|+..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998764
No 448
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.13 E-value=0.0052 Score=53.17 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
..-+++|.|+.||||||+.+.|+.-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999764
No 449
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.13 E-value=0.0053 Score=52.06 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|+.||||||+.+.|+..+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999997643
No 450
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.13 E-value=0.005 Score=51.28 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~ 106 (303)
++++|+|..||||||+.+.|.+
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~ 22 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK 22 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4788999999999999999985
No 451
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.0051 Score=51.85 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
..-+++|+|+.||||||+.+.|+.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999984
No 452
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.13 E-value=0.0063 Score=61.49 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD 117 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~ 117 (303)
.....++|.||||+||||+|+.+++.++..++.++.
T Consensus 50 ~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna 85 (725)
T PRK13341 50 DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA 85 (725)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence 334467899999999999999999988766655443
No 453
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.12 E-value=0.0058 Score=62.41 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~ 114 (303)
+..+++|.||||+||||+++.+++.++..++.
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~ 379 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVR 379 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 45689999999999999999999999876643
No 454
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.12 E-value=0.004 Score=57.38 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
.....|+|+|++||||||+.+.|...++
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccC
Confidence 3456899999999999999999988764
No 455
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.12 E-value=0.0056 Score=50.67 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45589999999999999999998754
No 456
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.12 E-value=0.0086 Score=52.56 Aligned_cols=37 Identities=27% Similarity=0.523 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRA 121 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l~~~ 121 (303)
.-++|.|++|+|||+++..|+..+ | +.++++.+++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~ 141 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA 141 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence 368899999999999999999987 3 345677777654
No 457
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.11 E-value=0.0068 Score=51.65 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAG 116 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d 116 (303)
..++.|+|+||||||++|..++... | ..+++.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4589999999999999999988654 3 4566654
No 458
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.11 E-value=0.0052 Score=52.31 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
+..+-.|+||+||||||+.+.|-+-
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHHHhh
Confidence 3457889999999999999998553
No 459
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.11 E-value=0.0054 Score=52.12 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..+.+++|.|+.||||||+.+.|+..+
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 455699999999999999999997654
No 460
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.10 E-value=0.0052 Score=53.72 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+++.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 461
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.10 E-value=0.0052 Score=53.64 Aligned_cols=25 Identities=28% Similarity=0.237 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
..-+++|.|+.||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999764
No 462
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.09 E-value=0.0053 Score=53.18 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 463
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.09 E-value=0.0053 Score=53.89 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999998754
No 464
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.09 E-value=0.0057 Score=52.12 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
..-+++|.|+.||||||+.+.|+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999754
No 465
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.08 E-value=0.0056 Score=53.06 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998643
No 466
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.07 E-value=0.0054 Score=53.97 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
.+-+++|.|+.||||||+.+.|+..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999864
No 467
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.07 E-value=0.0054 Score=53.99 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|++||||||+++.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 468
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.07 E-value=0.0055 Score=54.12 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998654
No 469
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.07 E-value=0.0056 Score=53.73 Aligned_cols=26 Identities=27% Similarity=0.158 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998654
No 470
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.07 E-value=0.0057 Score=53.46 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 471
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.06 E-value=0.0058 Score=52.87 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45699999999999999999998654
No 472
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.06 E-value=0.006 Score=54.02 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh---C--CceeehH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAG 116 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d 116 (303)
...++|.|+||||||+++.+++... | +.+|+.+
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~ 60 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE 60 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 3589999999999999998887654 2 4566654
No 473
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.06 E-value=0.0056 Score=52.05 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
+.-|+|.|+||+|||++|++|..-+
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 474
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.05 E-value=0.0058 Score=52.80 Aligned_cols=26 Identities=19% Similarity=0.103 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|++||||||+.+.|+..+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998754
No 475
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.05 E-value=0.0063 Score=56.79 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
++.+|+|.|+.|+||||++..|+..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 45789999999999999999998776
No 476
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.05 E-value=0.0057 Score=53.08 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44589999999999999999998654
No 477
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.05 E-value=0.0059 Score=49.01 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 344689999999999999999997654
No 478
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.05 E-value=0.0063 Score=50.72 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999997654
No 479
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.04 E-value=0.0061 Score=51.98 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
+.-+++|.|+.||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999997643
No 480
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.03 E-value=0.0056 Score=58.05 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
...|++.|+||+|||++|+.|+..++
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 45788999999999999999999874
No 481
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.03 E-value=0.0064 Score=49.87 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999997643
No 482
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.02 E-value=0.0062 Score=50.86 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999998654
No 483
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.02 E-value=0.0059 Score=49.36 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 022042 87 IMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 87 I~I~G~pGSGKSTla~~La~~l 108 (303)
|++.|+.||||||++..|+..+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 7799999999999999999876
No 484
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.01 E-value=0.0059 Score=54.28 Aligned_cols=27 Identities=33% Similarity=0.347 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.....|+|+|++||||||+...|.+.+
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i 151 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEI 151 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred ccceEEEEECCCccccchHHHHHhhhc
Confidence 346789999999999999999999877
No 485
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.01 E-value=0.0074 Score=57.27 Aligned_cols=35 Identities=29% Similarity=0.481 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh----C--CceeehH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY----G--LVHIAAG 116 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l----g--~~~i~~d 116 (303)
.+|.+|+++|++|+||||++..||..+ | ...++.|
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 346799999999999999988888764 3 3446665
No 486
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.00 E-value=0.0063 Score=52.63 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+.+++|.|+.||||||+.+.|+..+
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 44589999999999999999998754
No 487
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.00 E-value=0.0062 Score=53.60 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 488
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.00 E-value=0.0063 Score=53.49 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998754
No 489
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.00 E-value=0.0066 Score=52.47 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|+|+.||||||+.+.|+..+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 345689999999999999999998654
No 490
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.00 E-value=0.006 Score=53.88 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+++.|+..+
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 491
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.00 E-value=0.0062 Score=53.90 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45689999999999999999998654
No 492
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.00 E-value=0.0064 Score=53.06 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 493
>PRK10908 cell division protein FtsE; Provisional
Probab=95.99 E-value=0.0066 Score=52.32 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...+++|.|+.||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999997644
No 494
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.99 E-value=0.0063 Score=52.84 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999997654
No 495
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.99 E-value=0.006 Score=51.89 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|+.||||||+.+.|+..+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 345689999999999999999997654
No 496
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.98 E-value=0.0066 Score=52.73 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|+|+.||||||+.+.|+..+
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998654
No 497
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.98 E-value=0.0066 Score=52.08 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+.-+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 34589999999999999999997643
No 498
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.98 E-value=0.0067 Score=49.13 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 022042 86 KIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~ 106 (303)
.|+|.|.+|+||||+.++|..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 688999999999999999964
No 499
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.98 E-value=0.0066 Score=53.02 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 500
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.98 E-value=0.0059 Score=52.28 Aligned_cols=24 Identities=29% Similarity=0.142 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+++|.|+.||||||+.+.|+..+
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999997543
Done!