Query 022042
Match_columns 303
No_of_seqs 335 out of 1851
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 13:07:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gmt_A Adenylate kinase; ssgci 100.0 6.5E-40 2.2E-44 281.9 19.3 206 82-288 6-228 (230)
2 3sr0_A Adenylate kinase; phosp 100.0 2.1E-39 7.2E-44 276.3 21.7 198 85-289 1-204 (206)
3 3umf_A Adenylate kinase; rossm 100.0 4.9E-37 1.7E-41 263.1 20.9 191 76-289 21-213 (217)
4 3tlx_A Adenylate kinase 2; str 100.0 2.1E-34 7.3E-39 251.9 20.9 207 81-288 26-242 (243)
5 1zak_A Adenylate kinase; ATP:A 100.0 3.5E-34 1.2E-38 246.8 21.5 219 82-300 3-221 (222)
6 3be4_A Adenylate kinase; malar 100.0 2.1E-33 7.3E-38 241.3 22.1 206 81-287 2-217 (217)
7 3dl0_A Adenylate kinase; phosp 100.0 2.2E-33 7.4E-38 240.6 21.2 204 85-289 1-214 (216)
8 3fb4_A Adenylate kinase; psych 100.0 5.5E-33 1.9E-37 238.0 21.5 204 85-289 1-214 (216)
9 1e4v_A Adenylate kinase; trans 100.0 1.2E-32 4.1E-37 235.9 21.3 202 85-287 1-213 (214)
10 1ak2_A Adenylate kinase isoenz 100.0 2.5E-31 8.5E-36 230.8 25.2 207 83-290 15-231 (233)
11 1aky_A Adenylate kinase; ATP:A 100.0 1.8E-31 6E-36 229.6 22.2 206 82-288 2-218 (220)
12 1zd8_A GTP:AMP phosphotransfer 100.0 1.1E-30 3.7E-35 225.7 20.1 208 81-292 4-217 (227)
13 2xb4_A Adenylate kinase; ATP-b 100.0 4.3E-31 1.5E-35 227.9 16.2 201 85-287 1-222 (223)
14 2c95_A Adenylate kinase 1; tra 100.0 1.7E-26 5.8E-31 194.2 21.4 187 82-291 7-195 (196)
15 1ukz_A Uridylate kinase; trans 99.9 1.1E-25 3.7E-30 190.7 22.1 186 82-290 13-202 (203)
16 2cdn_A Adenylate kinase; phosp 99.9 9.6E-26 3.3E-30 190.9 21.5 179 82-288 18-200 (201)
17 1qf9_A UMP/CMP kinase, protein 99.9 4.6E-25 1.6E-29 184.6 23.9 182 83-289 5-191 (194)
18 2bwj_A Adenylate kinase 5; pho 99.9 8.8E-26 3E-30 190.2 19.1 185 83-290 11-197 (199)
19 3cm0_A Adenylate kinase; ATP-b 99.9 2E-24 6.8E-29 180.2 21.3 176 83-287 3-184 (186)
20 1tev_A UMP-CMP kinase; ploop, 99.9 3.2E-24 1.1E-28 179.8 22.6 184 83-289 2-194 (196)
21 2bbw_A Adenylate kinase 4, AK4 99.9 2.1E-22 7E-27 175.8 21.0 206 83-292 26-237 (246)
22 3lw7_A Adenylate kinase relate 99.8 1.7E-19 5.8E-24 147.9 20.7 173 85-291 2-178 (179)
23 4hlc_A DTMP kinase, thymidylat 99.8 2.6E-18 8.8E-23 145.9 15.5 173 85-293 3-204 (205)
24 4eaq_A DTMP kinase, thymidylat 99.8 5.9E-18 2E-22 146.2 17.1 179 82-292 24-227 (229)
25 2pbr_A DTMP kinase, thymidylat 99.8 1E-17 3.5E-22 139.9 17.3 162 85-290 1-192 (195)
26 2z0h_A DTMP kinase, thymidylat 99.8 1E-17 3.5E-22 140.4 15.6 169 85-292 1-194 (197)
27 3vaa_A Shikimate kinase, SK; s 99.8 1.1E-17 3.8E-22 141.1 15.8 169 82-291 23-197 (199)
28 4edh_A DTMP kinase, thymidylat 99.8 3E-17 1E-21 140.1 18.2 178 82-293 4-210 (213)
29 1nks_A Adenylate kinase; therm 99.7 3.1E-17 1.1E-21 136.7 15.8 168 84-287 1-193 (194)
30 3v9p_A DTMP kinase, thymidylat 99.7 4.6E-18 1.6E-22 146.3 10.1 175 82-289 23-226 (227)
31 3lv8_A DTMP kinase, thymidylat 99.7 1.2E-17 4.2E-22 144.5 10.7 179 81-293 24-232 (236)
32 4tmk_A Protein (thymidylate ki 99.7 1.7E-17 5.8E-22 141.5 11.4 173 83-293 2-210 (213)
33 3t61_A Gluconokinase; PSI-biol 99.7 6.3E-17 2.2E-21 136.6 14.8 161 83-290 17-180 (202)
34 3kb2_A SPBC2 prophage-derived 99.7 3.9E-16 1.3E-20 127.7 17.2 152 84-291 1-168 (173)
35 2v54_A DTMP kinase, thymidylat 99.7 1.6E-16 5.5E-21 133.8 15.1 170 83-294 3-195 (204)
36 2wwf_A Thymidilate kinase, put 99.7 1.2E-18 4E-23 147.9 1.8 175 81-290 7-200 (212)
37 1kht_A Adenylate kinase; phosp 99.7 6.2E-17 2.1E-21 134.8 11.1 117 84-207 3-135 (192)
38 3hjn_A DTMP kinase, thymidylat 99.7 3.9E-16 1.3E-20 131.6 15.5 165 85-291 1-193 (197)
39 2plr_A DTMP kinase, probable t 99.7 6.5E-16 2.2E-20 130.7 16.6 178 83-293 3-211 (213)
40 1nn5_A Similar to deoxythymidy 99.7 1.5E-16 5.1E-21 135.1 12.5 176 82-294 7-205 (215)
41 3trf_A Shikimate kinase, SK; a 99.7 4E-16 1.4E-20 129.6 14.7 167 84-292 5-177 (185)
42 4i1u_A Dephospho-COA kinase; s 99.7 1E-15 3.6E-20 129.6 16.9 172 82-294 7-206 (210)
43 1e6c_A Shikimate kinase; phosp 99.7 2.2E-15 7.6E-20 123.5 18.3 162 84-288 2-169 (173)
44 2rhm_A Putative kinase; P-loop 99.7 2.5E-16 8.6E-21 131.4 12.7 121 82-209 3-126 (193)
45 1jjv_A Dephospho-COA kinase; P 99.7 5.5E-16 1.9E-20 131.1 14.1 167 84-292 2-199 (206)
46 3ld9_A DTMP kinase, thymidylat 99.7 1.9E-16 6.6E-21 135.7 10.2 177 80-294 17-220 (223)
47 1vht_A Dephospho-COA kinase; s 99.7 2.8E-16 9.7E-21 134.1 10.8 168 83-292 3-197 (218)
48 2iyv_A Shikimate kinase, SK; t 99.7 9E-16 3.1E-20 127.4 13.2 161 85-288 3-167 (184)
49 2pt5_A Shikimate kinase, SK; a 99.7 9.8E-16 3.4E-20 125.1 13.0 110 85-209 1-114 (168)
50 2f6r_A COA synthase, bifunctio 99.7 7.6E-16 2.6E-20 136.9 13.0 172 82-293 73-272 (281)
51 1y63_A LMAJ004144AAA protein; 99.7 2.6E-15 8.8E-20 125.0 15.2 111 82-209 8-122 (184)
52 3tmk_A Thymidylate kinase; pho 99.6 9.4E-16 3.2E-20 130.9 11.8 175 83-294 4-207 (216)
53 1zuh_A Shikimate kinase; alpha 99.6 1.6E-15 5.4E-20 124.1 12.8 157 83-287 6-167 (168)
54 1ly1_A Polynucleotide kinase; 99.6 4.8E-15 1.7E-19 122.1 15.4 162 84-289 2-172 (181)
55 1cke_A CK, MSSA, protein (cyti 99.6 2.8E-15 9.5E-20 128.4 13.5 178 84-291 5-224 (227)
56 1via_A Shikimate kinase; struc 99.6 2.2E-15 7.6E-20 124.1 10.5 158 84-288 4-165 (175)
57 3nwj_A ATSK2; P loop, shikimat 99.6 1.6E-14 5.3E-19 126.1 15.8 178 84-294 48-241 (250)
58 1knq_A Gluconate kinase; ALFA/ 99.6 7.5E-14 2.6E-18 114.7 18.8 159 82-288 6-172 (175)
59 2if2_A Dephospho-COA kinase; a 99.6 3.7E-15 1.3E-19 125.7 10.6 166 84-290 1-192 (204)
60 3iij_A Coilin-interacting nucl 99.6 1.3E-14 4.3E-19 120.1 13.5 109 83-209 10-118 (180)
61 4eun_A Thermoresistant glucoki 99.6 9.3E-15 3.2E-19 123.2 12.8 161 79-288 24-192 (200)
62 2jaq_A Deoxyguanosine kinase; 99.6 2.8E-14 9.6E-19 119.8 15.4 168 85-291 1-202 (205)
63 1uf9_A TT1252 protein; P-loop, 99.6 7.1E-15 2.4E-19 123.5 9.8 169 81-292 5-196 (203)
64 3a4m_A L-seryl-tRNA(SEC) kinas 99.6 1.3E-14 4.5E-19 127.4 10.1 111 83-209 3-121 (260)
65 1kag_A SKI, shikimate kinase I 99.5 8.8E-14 3E-18 114.0 13.4 163 84-288 4-171 (173)
66 2vli_A Antibiotic resistance p 99.5 2E-13 6.7E-18 112.8 15.5 158 83-291 4-173 (183)
67 3ake_A Cytidylate kinase; CMP 99.5 3.4E-13 1.2E-17 113.6 16.9 163 86-288 4-207 (208)
68 2qt1_A Nicotinamide riboside k 99.5 6.8E-15 2.3E-19 124.5 6.3 171 80-289 17-205 (207)
69 4e22_A Cytidylate kinase; P-lo 99.5 7.4E-13 2.5E-17 115.7 18.8 41 82-122 25-65 (252)
70 1uj2_A Uridine-cytidine kinase 99.5 1E-14 3.4E-19 127.5 6.8 177 82-295 20-239 (252)
71 2qor_A Guanylate kinase; phosp 99.5 9.2E-14 3.1E-18 117.4 12.5 171 81-291 9-198 (204)
72 1ltq_A Polynucleotide kinase; 99.5 1.4E-14 4.8E-19 129.5 7.1 122 84-209 2-127 (301)
73 2h92_A Cytidylate kinase; ross 99.5 1.6E-13 5.3E-18 116.9 12.4 171 83-288 2-216 (219)
74 2grj_A Dephospho-COA kinase; T 99.5 4.1E-13 1.4E-17 112.5 13.6 43 83-125 11-53 (192)
75 1q3t_A Cytidylate kinase; nucl 99.5 2.7E-13 9.2E-18 117.2 11.9 173 81-289 13-234 (236)
76 1p5z_B DCK, deoxycytidine kina 99.5 5.1E-14 1.8E-18 123.7 7.3 86 186-292 173-261 (263)
77 3fdi_A Uncharacterized protein 99.5 4.1E-12 1.4E-16 107.2 17.8 169 83-289 5-198 (201)
78 3hdt_A Putative kinase; struct 99.4 5.5E-12 1.9E-16 108.0 17.7 170 84-289 14-218 (223)
79 3r20_A Cytidylate kinase; stru 99.4 5E-12 1.7E-16 108.9 14.4 42 82-123 7-48 (233)
80 1qhx_A CPT, protein (chloramph 99.4 5.2E-12 1.8E-16 103.8 13.8 119 84-209 3-134 (178)
81 1m7g_A Adenylylsulfate kinase; 99.4 2.3E-12 7.8E-17 109.3 10.3 111 81-205 22-149 (211)
82 2yvu_A Probable adenylyl-sulfa 99.3 1.3E-11 4.4E-16 102.4 13.2 111 82-206 11-131 (186)
83 2vp4_A Deoxynucleoside kinase; 99.3 2E-12 7E-17 111.2 6.5 81 184-292 143-227 (230)
84 2pez_A Bifunctional 3'-phospho 99.3 3.5E-12 1.2E-16 105.2 5.1 113 82-208 3-125 (179)
85 3uie_A Adenylyl-sulfate kinase 99.3 3.5E-10 1.2E-14 94.9 17.3 112 81-205 22-140 (200)
86 1gvn_B Zeta; postsegregational 99.2 8.9E-11 3.1E-15 104.4 14.0 117 82-208 31-162 (287)
87 2ocp_A DGK, deoxyguanosine kin 99.2 1.5E-11 5.1E-16 106.4 7.2 29 83-111 1-30 (241)
88 1gtv_A TMK, thymidylate kinase 99.2 3.5E-13 1.2E-17 114.1 -4.8 177 85-285 1-209 (214)
89 3tr0_A Guanylate kinase, GMP k 99.2 5.8E-10 2E-14 93.5 14.4 167 83-290 6-187 (205)
90 1x6v_B Bifunctional 3'-phospho 99.2 7.6E-10 2.6E-14 107.7 17.1 112 83-207 51-171 (630)
91 2j41_A Guanylate kinase; GMP, 99.2 2.7E-12 9.2E-17 107.9 -0.1 166 83-292 5-189 (207)
92 2p5t_B PEZT; postsegregational 99.2 8.4E-11 2.9E-15 102.5 9.0 119 82-209 30-158 (253)
93 3tau_A Guanylate kinase, GMP k 99.1 1.6E-10 5.5E-15 97.7 10.1 28 82-109 6-33 (208)
94 3zvl_A Bifunctional polynucleo 99.1 1.3E-10 4.4E-15 108.7 10.1 101 81-209 255-358 (416)
95 2gks_A Bifunctional SAT/APS ki 99.1 2.6E-10 8.9E-15 110.0 8.7 113 82-206 370-488 (546)
96 3ch4_B Pmkase, phosphomevalona 99.1 4.6E-09 1.6E-13 87.9 15.0 117 83-205 10-144 (202)
97 3asz_A Uridine kinase; cytidin 99.0 1.2E-09 4.2E-14 92.1 11.2 39 81-119 3-43 (211)
98 2ze6_A Isopentenyl transferase 99.0 4.8E-10 1.6E-14 97.8 8.1 123 84-209 1-139 (253)
99 1ex7_A Guanylate kinase; subst 99.0 1.2E-09 4.2E-14 90.7 9.1 66 220-288 118-183 (186)
100 1a7j_A Phosphoribulokinase; tr 98.9 1.8E-10 6.2E-15 102.6 1.9 38 83-120 4-46 (290)
101 3a00_A Guanylate kinase, GMP k 98.9 1.3E-08 4.4E-13 84.3 12.8 25 85-109 2-26 (186)
102 3lnc_A Guanylate kinase, GMP k 98.9 1.4E-08 4.9E-13 86.9 12.3 26 83-108 26-52 (231)
103 1p6x_A Thymidine kinase; P-loo 98.9 9.8E-09 3.3E-13 92.7 11.4 30 81-110 4-33 (334)
104 2axn_A 6-phosphofructo-2-kinas 98.9 3.2E-09 1.1E-13 101.8 7.9 119 83-209 34-169 (520)
105 1m8p_A Sulfate adenylyltransfe 98.8 3.4E-09 1.2E-13 102.7 7.4 111 81-205 393-513 (573)
106 2bdt_A BH3686; alpha-beta prot 98.8 3.6E-08 1.2E-12 81.5 11.5 115 85-209 3-123 (189)
107 1rz3_A Hypothetical protein rb 98.8 1.8E-08 6.1E-13 84.5 9.4 117 81-208 19-164 (201)
108 2jeo_A Uridine-cytidine kinase 98.8 1.4E-08 4.6E-13 87.9 8.0 30 82-111 23-52 (245)
109 1zp6_A Hypothetical protein AT 98.8 1.9E-08 6.4E-13 83.2 8.5 120 81-209 6-127 (191)
110 3czq_A Putative polyphosphate 98.7 1.3E-07 4.5E-12 83.8 11.8 105 82-210 84-213 (304)
111 1of1_A Thymidine kinase; trans 98.6 4.5E-07 1.6E-11 82.8 13.4 29 81-109 46-74 (376)
112 3a8t_A Adenylate isopentenyltr 98.6 3E-08 1E-12 89.4 5.1 37 82-118 38-74 (339)
113 1osn_A Thymidine kinase, VZV-T 98.6 2.6E-07 8.8E-12 83.5 10.9 29 82-110 10-39 (341)
114 1dek_A Deoxynucleoside monopho 98.6 1.2E-06 4.1E-11 75.5 14.1 41 84-124 1-41 (241)
115 3cr8_A Sulfate adenylyltranfer 98.5 8.5E-08 2.9E-12 92.4 6.9 38 82-119 367-410 (552)
116 1sq5_A Pantothenate kinase; P- 98.5 1.2E-07 4.3E-12 84.8 7.5 37 82-118 78-121 (308)
117 1s96_A Guanylate kinase, GMP k 98.5 1.2E-05 4.1E-10 68.3 19.3 30 80-109 12-41 (219)
118 1e2k_A Thymidine kinase; trans 98.5 1E-06 3.6E-11 79.3 13.1 28 82-109 2-29 (331)
119 3tqc_A Pantothenate kinase; bi 98.5 3.8E-07 1.3E-11 82.0 9.5 38 81-118 89-133 (321)
120 1kgd_A CASK, peripheral plasma 98.5 1.2E-06 4.1E-11 71.9 11.1 26 84-109 5-30 (180)
121 3c8u_A Fructokinase; YP_612366 98.4 3.2E-07 1.1E-11 77.2 7.1 37 82-118 20-61 (208)
122 3czp_A Putative polyphosphate 98.4 1.1E-06 3.8E-11 83.3 10.8 170 81-294 297-497 (500)
123 1lvg_A Guanylate kinase, GMP k 98.4 2.3E-06 8E-11 71.4 11.6 69 222-293 122-191 (198)
124 3czp_A Putative polyphosphate 98.4 2.7E-06 9.3E-11 80.7 12.4 170 81-294 40-240 (500)
125 1bif_A 6-phosphofructo-2-kinas 98.4 1E-06 3.5E-11 83.4 9.3 119 83-208 38-172 (469)
126 3ney_A 55 kDa erythrocyte memb 98.2 5.2E-06 1.8E-10 69.3 9.2 27 83-109 18-44 (197)
127 4gp7_A Metallophosphoesterase; 98.1 3.4E-05 1.2E-09 62.6 11.1 111 83-209 8-122 (171)
128 3crm_A TRNA delta(2)-isopenten 98.0 2.2E-06 7.5E-11 76.9 3.3 34 85-118 6-39 (323)
129 3rhf_A Putative polyphosphate 98.0 0.00014 4.8E-09 63.6 14.2 150 83-278 74-253 (289)
130 3d3q_A TRNA delta(2)-isopenten 98.0 3.7E-06 1.3E-10 75.9 4.0 34 85-118 8-41 (340)
131 3foz_A TRNA delta(2)-isopenten 97.9 5.1E-06 1.8E-10 73.9 4.2 36 82-117 8-43 (316)
132 3exa_A TRNA delta(2)-isopenten 97.9 3.8E-06 1.3E-10 74.9 3.2 36 83-118 2-37 (322)
133 1z6g_A Guanylate kinase; struc 97.9 0.00036 1.2E-08 58.8 14.4 66 221-290 142-208 (218)
134 1kjw_A Postsynaptic density pr 97.8 0.00024 8.4E-09 62.9 12.0 24 83-109 104-127 (295)
135 3t15_A Ribulose bisphosphate c 97.6 3.3E-05 1.1E-09 68.4 4.1 36 83-118 35-72 (293)
136 3eph_A TRNA isopentenyltransfe 97.6 2.9E-05 9.8E-10 71.5 3.6 33 85-117 3-35 (409)
137 1g8f_A Sulfate adenylyltransfe 97.5 3.8E-05 1.3E-09 73.1 3.6 36 82-117 393-435 (511)
138 3ec2_A DNA replication protein 97.5 0.00016 5.3E-09 58.9 5.8 39 83-121 37-81 (180)
139 1odf_A YGR205W, hypothetical 3 97.4 0.00011 3.6E-09 65.1 4.4 39 81-119 28-74 (290)
140 1lv7_A FTSH; alpha/beta domain 97.4 0.00011 3.9E-09 63.3 4.5 32 84-115 45-76 (257)
141 2qz4_A Paraplegin; AAA+, SPG7, 97.4 0.00011 3.9E-09 63.1 4.4 31 84-114 39-69 (262)
142 1ye8_A Protein THEP1, hypothet 97.4 8.9E-05 3.1E-09 60.7 3.5 26 85-110 1-26 (178)
143 2qmh_A HPR kinase/phosphorylas 97.4 9E-05 3.1E-09 61.6 3.4 34 83-117 33-66 (205)
144 4b4t_M 26S protease regulatory 97.4 0.00011 3.7E-09 68.5 4.3 33 83-115 214-246 (434)
145 4b4t_K 26S protease regulatory 97.4 0.00012 4.2E-09 68.1 4.4 32 84-115 206-237 (428)
146 2xkx_A Disks large homolog 4; 97.3 0.00096 3.3E-08 66.3 10.9 23 84-109 531-553 (721)
147 4b4t_L 26S protease subunit RP 97.3 0.00015 5.2E-09 67.6 4.6 32 84-115 215-246 (437)
148 2ga8_A Hypothetical 39.9 kDa p 97.3 4.4E-05 1.5E-09 69.2 1.0 29 84-112 24-52 (359)
149 3cf0_A Transitional endoplasmi 97.3 0.00014 4.8E-09 64.5 4.2 38 83-120 48-87 (301)
150 4b4t_J 26S protease regulatory 97.3 0.00015 5E-09 66.9 4.2 32 84-115 182-213 (405)
151 3h4m_A Proteasome-activating n 97.3 0.00018 6.1E-09 62.8 4.5 32 83-114 50-81 (285)
152 1d2n_A N-ethylmaleimide-sensit 97.3 0.00021 7.2E-09 62.2 4.9 35 81-115 61-95 (272)
153 1c9k_A COBU, adenosylcobinamid 97.3 0.00014 4.7E-09 59.7 3.4 25 87-112 2-26 (180)
154 3b9p_A CG5977-PA, isoform A; A 97.3 0.00019 6.5E-09 63.1 4.6 31 84-114 54-84 (297)
155 2x8a_A Nuclear valosin-contain 97.3 0.00015 5.3E-09 63.4 3.8 28 87-114 47-74 (274)
156 1xjc_A MOBB protein homolog; s 97.2 0.00021 7.1E-09 58.0 3.8 26 83-108 3-28 (169)
157 3hws_A ATP-dependent CLP prote 97.2 0.0002 6.8E-09 65.1 4.1 32 84-115 51-82 (363)
158 1g41_A Heat shock protein HSLU 97.2 0.00018 6.2E-09 67.2 3.8 33 84-116 50-82 (444)
159 4b4t_H 26S protease regulatory 97.2 0.00021 7.2E-09 66.8 4.1 33 83-115 242-274 (467)
160 4b4t_I 26S protease regulatory 97.2 0.00022 7.5E-09 66.1 4.1 32 84-115 216-247 (437)
161 3eie_A Vacuolar protein sortin 97.2 0.00027 9.2E-09 63.2 4.4 32 84-115 51-82 (322)
162 1jbk_A CLPB protein; beta barr 97.2 0.00033 1.1E-08 56.5 4.5 26 83-108 42-67 (195)
163 3aez_A Pantothenate kinase; tr 97.1 0.0003 1E-08 62.8 4.5 28 81-108 87-114 (312)
164 1ofh_A ATP-dependent HSL prote 97.1 0.00027 9.2E-09 62.2 4.0 31 84-114 50-80 (310)
165 2p65_A Hypothetical protein PF 97.1 0.00029 9.8E-09 56.8 3.6 26 83-108 42-67 (187)
166 2w58_A DNAI, primosome compone 97.1 0.00063 2.2E-08 56.1 5.8 37 85-121 55-96 (202)
167 1ixz_A ATP-dependent metallopr 97.1 0.00029 1E-08 60.5 3.8 29 86-114 51-79 (254)
168 1um8_A ATP-dependent CLP prote 97.1 0.00032 1.1E-08 64.1 4.0 32 84-115 72-103 (376)
169 2qp9_X Vacuolar protein sortin 97.1 0.00037 1.3E-08 63.3 4.2 31 85-115 85-115 (355)
170 1in4_A RUVB, holliday junction 97.0 0.00043 1.5E-08 62.3 4.5 29 84-112 51-79 (334)
171 1xwi_A SKD1 protein; VPS4B, AA 97.0 0.00041 1.4E-08 62.1 4.3 29 85-113 46-75 (322)
172 1znw_A Guanylate kinase, GMP k 97.0 0.0004 1.4E-08 57.9 3.9 27 83-109 19-45 (207)
173 3tvt_A Disks large 1 tumor sup 97.0 0.0037 1.3E-07 55.1 10.2 23 84-109 100-122 (292)
174 2r62_A Cell division protease 97.0 0.00017 5.7E-09 62.5 1.3 30 85-114 45-74 (268)
175 1svm_A Large T antigen; AAA+ f 97.0 0.00054 1.8E-08 62.8 4.8 34 81-114 166-199 (377)
176 3d8b_A Fidgetin-like protein 1 97.0 0.00051 1.8E-08 62.4 4.6 32 83-114 116-147 (357)
177 3syl_A Protein CBBX; photosynt 97.0 0.00042 1.4E-08 61.1 3.8 25 84-108 67-91 (309)
178 1np6_A Molybdopterin-guanine d 97.0 0.00057 1.9E-08 55.7 4.0 25 84-108 6-30 (174)
179 2kjq_A DNAA-related protein; s 97.0 0.00033 1.1E-08 55.5 2.5 26 83-108 35-60 (149)
180 1iy2_A ATP-dependent metallopr 97.0 0.00048 1.7E-08 60.1 3.8 29 86-114 75-103 (278)
181 3bos_A Putative DNA replicatio 96.9 0.00058 2E-08 57.5 3.9 27 83-109 51-77 (242)
182 3pfi_A Holliday junction ATP-d 96.9 0.00066 2.2E-08 60.8 4.4 32 84-115 55-86 (338)
183 2c9o_A RUVB-like 1; hexameric 96.9 0.00058 2E-08 64.1 4.1 31 84-114 63-95 (456)
184 1sxj_A Activator 1 95 kDa subu 96.9 0.00063 2.2E-08 64.9 4.3 32 84-115 77-108 (516)
185 3kfv_A Tight junction protein 96.9 0.013 4.5E-07 51.8 12.5 90 85-204 146-236 (308)
186 1tue_A Replication protein E1; 96.9 0.0006 2.1E-08 57.0 3.5 29 85-113 59-87 (212)
187 1l8q_A Chromosomal replication 96.9 0.001 3.5E-08 59.2 5.4 37 84-120 37-78 (324)
188 3vfd_A Spastin; ATPase, microt 96.9 0.00066 2.3E-08 62.3 4.1 32 84-115 148-179 (389)
189 1htw_A HI0065; nucleotide-bind 96.8 0.00089 3.1E-08 53.6 4.3 27 82-108 31-57 (158)
190 3n70_A Transport activator; si 96.8 0.00064 2.2E-08 53.3 3.4 24 85-108 25-48 (145)
191 2ce7_A Cell division protein F 96.8 0.00083 2.8E-08 63.4 4.4 31 85-115 50-80 (476)
192 2r2a_A Uncharacterized protein 96.8 0.00085 2.9E-08 55.9 3.8 26 82-107 3-28 (199)
193 2f1r_A Molybdopterin-guanine d 96.8 0.00038 1.3E-08 56.6 1.5 24 85-108 3-26 (171)
194 3cf2_A TER ATPase, transitiona 96.8 0.00069 2.3E-08 67.8 3.5 33 83-115 237-269 (806)
195 1njg_A DNA polymerase III subu 96.7 0.00091 3.1E-08 55.9 3.8 27 84-110 45-71 (250)
196 3pvs_A Replication-associated 96.7 0.0012 4.2E-08 61.8 4.6 33 83-115 49-81 (447)
197 2ehv_A Hypothetical protein PH 96.7 0.00088 3E-08 56.9 3.4 23 83-105 29-51 (251)
198 3shw_A Tight junction protein 96.7 0.0062 2.1E-07 57.2 9.3 95 83-203 223-317 (468)
199 4a74_A DNA repair and recombin 96.7 0.00095 3.3E-08 56.0 3.5 26 83-108 24-49 (231)
200 2zan_A Vacuolar protein sortin 96.7 0.001 3.4E-08 62.3 3.8 36 84-119 167-205 (444)
201 2eyu_A Twitching motility prot 96.7 0.0013 4.5E-08 57.0 4.4 27 82-108 23-49 (261)
202 1rj9_A FTSY, signal recognitio 96.6 0.0013 4.3E-08 58.5 4.2 26 83-108 101-126 (304)
203 2v9p_A Replication protein E1; 96.6 0.0012 4.2E-08 58.6 3.9 29 81-109 123-151 (305)
204 2i3b_A HCR-ntpase, human cance 96.6 0.0011 3.7E-08 54.8 3.4 23 86-108 3-25 (189)
205 3e70_C DPA, signal recognition 96.6 0.0015 5E-08 58.8 4.5 27 82-108 127-153 (328)
206 2chg_A Replication factor C sm 96.6 0.0011 3.9E-08 54.6 3.5 23 86-108 40-62 (226)
207 3m6a_A ATP-dependent protease 96.6 0.0014 4.7E-08 63.0 4.5 31 83-113 107-137 (543)
208 3te6_A Regulatory protein SIR3 96.6 0.0009 3.1E-08 59.8 2.9 28 81-108 42-69 (318)
209 1hqc_A RUVB; extended AAA-ATPa 96.6 0.0012 4E-08 58.6 3.6 30 84-113 38-67 (324)
210 1vma_A Cell division protein F 96.6 0.0015 5.2E-08 58.1 4.3 27 82-108 102-128 (306)
211 3uk6_A RUVB-like 2; hexameric 96.6 0.0012 4.2E-08 59.6 3.8 26 85-110 71-96 (368)
212 2orw_A Thymidine kinase; TMTK, 96.6 0.0015 5E-08 53.6 3.8 25 84-108 3-27 (184)
213 2qby_B CDC6 homolog 3, cell di 96.6 0.0015 5.2E-08 59.2 4.2 27 82-108 43-69 (384)
214 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0015 5.1E-08 54.7 3.8 26 83-108 22-47 (235)
215 3u61_B DNA polymerase accessor 96.6 0.0012 4.2E-08 58.6 3.4 33 83-115 47-79 (324)
216 2r44_A Uncharacterized protein 96.5 0.001 3.4E-08 59.5 2.8 29 85-113 47-75 (331)
217 3b9q_A Chloroplast SRP recepto 96.5 0.0018 6.1E-08 57.5 4.3 27 82-108 98-124 (302)
218 2dhr_A FTSH; AAA+ protein, hex 96.5 0.0014 4.7E-08 62.3 3.8 30 85-114 65-94 (499)
219 3tif_A Uncharacterized ABC tra 96.5 0.0013 4.3E-08 56.2 3.2 27 82-108 29-55 (235)
220 2v1u_A Cell division control p 96.5 0.0012 4E-08 59.8 3.1 26 83-108 43-68 (387)
221 3co5_A Putative two-component 96.5 0.00042 1.4E-08 54.3 0.1 25 85-109 28-52 (143)
222 3hu3_A Transitional endoplasmi 96.5 0.0016 5.6E-08 61.7 4.1 33 83-115 237-269 (489)
223 2qby_A CDC6 homolog 1, cell di 96.5 0.0015 5.2E-08 58.9 3.8 26 83-108 44-69 (386)
224 2cvh_A DNA repair and recombin 96.5 0.0017 5.7E-08 54.0 3.6 33 83-115 19-53 (220)
225 2gf9_A RAS-related protein RAB 96.5 0.0016 5.5E-08 52.8 3.4 26 82-107 20-45 (189)
226 1fnn_A CDC6P, cell division co 96.4 0.0019 6.6E-08 58.5 4.1 23 86-108 46-68 (389)
227 4fcw_A Chaperone protein CLPB; 96.4 0.0022 7.6E-08 56.4 4.3 24 85-108 48-71 (311)
228 2pcj_A ABC transporter, lipopr 96.4 0.0014 4.6E-08 55.6 2.7 26 83-108 29-54 (224)
229 2onk_A Molybdate/tungstate ABC 96.4 0.0018 6E-08 55.5 3.3 24 85-108 25-48 (240)
230 2cbz_A Multidrug resistance-as 96.4 0.0017 5.7E-08 55.5 3.2 27 82-108 29-55 (237)
231 3tsz_A Tight junction protein 96.4 0.0047 1.6E-07 56.8 6.2 29 83-114 231-259 (391)
232 1gwn_A RHO-related GTP-binding 96.4 0.002 7E-08 53.4 3.5 31 77-107 21-51 (205)
233 3tqf_A HPR(Ser) kinase; transf 96.4 0.0021 7.1E-08 52.1 3.3 33 83-116 15-47 (181)
234 3pxg_A Negative regulator of g 96.4 0.0026 8.8E-08 59.9 4.5 27 82-108 199-225 (468)
235 3b85_A Phosphate starvation-in 96.4 0.0016 5.6E-08 54.5 2.8 25 83-107 21-45 (208)
236 1ypw_A Transitional endoplasmi 96.3 0.0018 6.2E-08 65.1 3.5 33 83-115 237-269 (806)
237 2og2_A Putative signal recogni 96.3 0.0027 9.3E-08 57.7 4.4 27 82-108 155-181 (359)
238 2z4s_A Chromosomal replication 96.3 0.0037 1.3E-07 58.4 5.4 37 84-120 130-173 (440)
239 3con_A GTPase NRAS; structural 96.3 0.0022 7.4E-08 52.0 3.4 25 83-107 20-44 (190)
240 1mv5_A LMRA, multidrug resista 96.3 0.002 6.9E-08 55.2 3.3 27 82-108 26-52 (243)
241 1b0u_A Histidine permease; ABC 96.3 0.0019 6.5E-08 56.1 3.1 27 82-108 30-56 (262)
242 2dyk_A GTP-binding protein; GT 96.3 0.0027 9.2E-08 49.6 3.8 24 84-107 1-24 (161)
243 3gfo_A Cobalt import ATP-bindi 96.3 0.0017 5.7E-08 56.9 2.8 27 82-108 32-58 (275)
244 2qgz_A Helicase loader, putati 96.3 0.0034 1.2E-07 55.7 4.9 39 84-122 152-196 (308)
245 3p32_A Probable GTPase RV1496/ 96.3 0.0032 1.1E-07 57.0 4.8 28 81-108 76-103 (355)
246 2b8t_A Thymidine kinase; deoxy 96.3 0.003 1E-07 53.5 4.2 28 81-108 9-36 (223)
247 2wsm_A Hydrogenase expression/ 96.3 0.0029 9.9E-08 52.7 4.1 26 83-108 29-54 (221)
248 2bjv_A PSP operon transcriptio 96.3 0.0017 5.9E-08 56.0 2.8 26 84-109 29-54 (265)
249 1oix_A RAS-related protein RAB 96.3 0.0023 7.8E-08 52.3 3.4 24 84-107 29-52 (191)
250 2px0_A Flagellar biosynthesis 96.3 0.0025 8.7E-08 56.3 3.8 26 83-108 104-129 (296)
251 4g1u_C Hemin import ATP-bindin 96.3 0.0019 6.4E-08 56.3 2.9 27 82-108 35-61 (266)
252 2ff7_A Alpha-hemolysin translo 96.3 0.0019 6.4E-08 55.6 2.9 27 82-108 33-59 (247)
253 1n0w_A DNA repair protein RAD5 96.3 0.0022 7.5E-08 54.2 3.3 25 83-107 23-47 (243)
254 1lw7_A Transcriptional regulat 96.3 0.0022 7.5E-08 58.3 3.4 28 84-111 170-197 (365)
255 2d2e_A SUFC protein; ABC-ATPas 96.3 0.0023 8E-08 55.1 3.4 25 83-107 28-52 (250)
256 2olj_A Amino acid ABC transpor 96.3 0.0021 7.3E-08 55.8 3.1 27 82-108 48-74 (263)
257 2zu0_C Probable ATP-dependent 96.3 0.0026 9E-08 55.3 3.7 26 82-107 44-69 (267)
258 2ce2_X GTPase HRAS; signaling 96.2 0.0029 9.8E-08 49.4 3.6 24 84-107 3-26 (166)
259 1ji0_A ABC transporter; ATP bi 96.2 0.002 7E-08 55.1 2.9 26 83-108 31-56 (240)
260 2wji_A Ferrous iron transport 96.2 0.0029 9.8E-08 50.3 3.6 23 84-106 3-25 (165)
261 2ixe_A Antigen peptide transpo 96.2 0.0022 7.6E-08 55.9 3.2 27 82-108 43-69 (271)
262 2pze_A Cystic fibrosis transme 96.2 0.0021 7E-08 54.7 2.9 27 82-108 32-58 (229)
263 2yhs_A FTSY, cell division pro 96.2 0.003 1E-07 59.6 4.2 27 82-108 291-317 (503)
264 1kao_A RAP2A; GTP-binding prot 96.2 0.0031 1.1E-07 49.4 3.7 25 83-107 2-26 (167)
265 2ghi_A Transport protein; mult 96.2 0.0023 7.8E-08 55.5 3.2 27 82-108 44-70 (260)
266 1g6h_A High-affinity branched- 96.2 0.0021 7.1E-08 55.6 2.9 26 83-108 32-57 (257)
267 2a9k_A RAS-related protein RAL 96.2 0.0029 1E-07 50.7 3.7 25 83-107 17-41 (187)
268 1sgw_A Putative ABC transporte 96.2 0.0018 6.2E-08 54.5 2.4 26 83-108 34-59 (214)
269 1cr0_A DNA primase/helicase; R 96.2 0.003 1E-07 55.5 3.9 27 82-108 33-59 (296)
270 2qm8_A GTPase/ATPase; G protei 96.2 0.004 1.4E-07 56.1 4.8 28 81-108 52-79 (337)
271 3oes_A GTPase rhebl1; small GT 96.2 0.0028 9.5E-08 52.0 3.5 26 82-107 22-47 (201)
272 1vpl_A ABC transporter, ATP-bi 96.2 0.0024 8.2E-08 55.3 3.1 27 82-108 39-65 (256)
273 1u8z_A RAS-related protein RAL 96.2 0.0034 1.2E-07 49.2 3.9 25 83-107 3-27 (168)
274 2wjg_A FEOB, ferrous iron tran 96.2 0.0032 1.1E-07 50.8 3.8 24 83-106 6-29 (188)
275 2www_A Methylmalonic aciduria 96.2 0.0034 1.2E-07 56.8 4.3 26 83-108 73-98 (349)
276 2fn4_A P23, RAS-related protei 96.2 0.0033 1.1E-07 50.1 3.8 26 82-107 7-32 (181)
277 2ewv_A Twitching motility prot 96.2 0.0035 1.2E-07 57.3 4.3 27 82-108 134-160 (372)
278 1wms_A RAB-9, RAB9, RAS-relate 96.2 0.0028 9.6E-08 50.5 3.3 25 83-107 6-30 (177)
279 3c5c_A RAS-like protein 12; GD 96.2 0.0032 1.1E-07 51.1 3.6 26 82-107 19-44 (187)
280 1sxj_D Activator 1 41 kDa subu 96.2 0.0028 9.6E-08 56.7 3.5 24 86-109 60-83 (353)
281 2fv8_A H6, RHO-related GTP-bin 96.2 0.003 1E-07 52.2 3.4 26 82-107 23-48 (207)
282 1sxj_C Activator 1 40 kDa subu 96.2 0.0028 9.6E-08 56.8 3.5 23 87-109 49-71 (340)
283 3kl4_A SRP54, signal recogniti 96.2 0.0034 1.1E-07 58.5 4.0 26 83-108 96-121 (433)
284 1g8p_A Magnesium-chelatase 38 96.2 0.0018 6.1E-08 58.0 2.1 24 86-109 47-70 (350)
285 1nij_A Hypothetical protein YJ 96.1 0.0026 8.9E-08 56.8 3.1 25 83-107 3-27 (318)
286 3cf2_A TER ATPase, transitiona 96.1 0.0023 8E-08 64.0 3.0 32 84-115 511-542 (806)
287 3jvv_A Twitching mobility prot 96.1 0.0034 1.2E-07 57.0 3.8 26 83-108 122-147 (356)
288 2qen_A Walker-type ATPase; unk 96.1 0.004 1.4E-07 55.4 4.3 33 85-117 32-64 (350)
289 2qi9_C Vitamin B12 import ATP- 96.1 0.0026 8.8E-08 54.8 2.9 26 83-108 25-50 (249)
290 2yz2_A Putative ABC transporte 96.1 0.0028 9.7E-08 55.1 3.2 27 82-108 31-57 (266)
291 1ky3_A GTP-binding protein YPT 96.1 0.0036 1.2E-07 49.9 3.6 25 83-107 7-31 (182)
292 2f9l_A RAB11B, member RAS onco 96.1 0.0037 1.3E-07 51.3 3.7 24 84-107 5-28 (199)
293 3dm5_A SRP54, signal recogniti 96.1 0.0038 1.3E-07 58.2 4.2 26 83-108 99-124 (443)
294 1jr3_A DNA polymerase III subu 96.1 0.0041 1.4E-07 56.1 4.3 27 84-110 38-64 (373)
295 2hf9_A Probable hydrogenase ni 96.1 0.0042 1.4E-07 51.9 4.1 27 82-108 36-62 (226)
296 3clv_A RAB5 protein, putative; 96.1 0.0046 1.6E-07 50.1 4.2 26 82-107 5-30 (208)
297 2ihy_A ABC transporter, ATP-bi 96.1 0.0026 9E-08 55.7 2.9 27 82-108 45-71 (279)
298 2a5j_A RAS-related protein RAB 96.1 0.0031 1.1E-07 51.2 3.1 24 84-107 21-44 (191)
299 2dr3_A UPF0273 protein PH0284; 96.1 0.0035 1.2E-07 53.0 3.6 26 83-108 22-47 (247)
300 2p5s_A RAS and EF-hand domain 96.1 0.0041 1.4E-07 50.9 3.8 27 81-107 25-51 (199)
301 2h57_A ADP-ribosylation factor 96.1 0.0027 9.4E-08 51.5 2.8 26 82-107 19-44 (190)
302 1z2a_A RAS-related protein RAB 96.1 0.004 1.4E-07 48.9 3.7 25 83-107 4-28 (168)
303 1sxj_E Activator 1 40 kDa subu 96.1 0.0033 1.1E-07 56.4 3.5 22 87-108 39-60 (354)
304 3sop_A Neuronal-specific septi 96.1 0.0038 1.3E-07 54.4 3.7 24 85-108 3-26 (270)
305 1c1y_A RAS-related protein RAP 96.1 0.0044 1.5E-07 48.6 3.8 23 84-106 3-25 (167)
306 2nq2_C Hypothetical ABC transp 96.1 0.0028 9.6E-08 54.7 2.8 26 83-108 30-55 (253)
307 3fvq_A Fe(3+) IONS import ATP- 96.1 0.0035 1.2E-07 56.9 3.5 27 82-108 28-54 (359)
308 3ihw_A Centg3; RAS, centaurin, 96.1 0.0046 1.6E-07 50.1 3.9 25 83-107 19-43 (184)
309 2gco_A H9, RHO-related GTP-bin 96.0 0.0041 1.4E-07 51.0 3.7 25 83-107 24-48 (201)
310 3dz8_A RAS-related protein RAB 96.0 0.003 1E-07 51.3 2.7 26 83-108 22-47 (191)
311 3pxi_A Negative regulator of g 96.0 0.0045 1.5E-07 61.8 4.5 36 82-117 199-244 (758)
312 1zu4_A FTSY; GTPase, signal re 96.0 0.0048 1.7E-07 55.1 4.3 27 82-108 103-129 (320)
313 1yrb_A ATP(GTP)binding protein 96.0 0.0053 1.8E-07 52.6 4.4 28 81-108 11-38 (262)
314 1zd9_A ADP-ribosylation factor 96.0 0.0041 1.4E-07 50.4 3.5 25 82-106 20-44 (188)
315 1upt_A ARL1, ADP-ribosylation 96.0 0.0056 1.9E-07 48.3 4.2 25 82-106 5-29 (171)
316 2h17_A ADP-ribosylation factor 96.0 0.0036 1.2E-07 50.4 3.1 24 83-106 20-43 (181)
317 2lkc_A Translation initiation 96.0 0.005 1.7E-07 49.0 3.9 25 82-106 6-30 (178)
318 3rlf_A Maltose/maltodextrin im 96.0 0.0041 1.4E-07 56.9 3.7 27 82-108 27-53 (381)
319 2gza_A Type IV secretion syste 96.0 0.0028 9.6E-08 57.6 2.5 28 82-109 173-200 (361)
320 2gf0_A GTP-binding protein DI- 96.0 0.0051 1.8E-07 49.9 3.9 26 81-106 5-30 (199)
321 1vg8_A RAS-related protein RAB 96.0 0.0045 1.5E-07 50.7 3.6 26 82-107 6-31 (207)
322 1iqp_A RFCS; clamp loader, ext 96.0 0.0047 1.6E-07 54.4 4.0 25 85-109 47-71 (327)
323 3lxx_A GTPase IMAP family memb 96.0 0.0042 1.4E-07 52.7 3.5 24 83-106 28-51 (239)
324 2yyz_A Sugar ABC transporter, 96.0 0.0043 1.5E-07 56.3 3.7 27 82-108 27-53 (359)
325 2nzj_A GTP-binding protein REM 95.9 0.0048 1.7E-07 48.9 3.6 24 83-106 3-26 (175)
326 1xx6_A Thymidine kinase; NESG, 95.9 0.0064 2.2E-07 50.1 4.4 27 82-108 6-32 (191)
327 1z0f_A RAB14, member RAS oncog 95.9 0.0049 1.7E-07 48.9 3.6 25 83-107 14-38 (179)
328 3lxw_A GTPase IMAP family memb 95.9 0.0044 1.5E-07 53.1 3.5 25 82-106 19-43 (247)
329 2it1_A 362AA long hypothetical 95.9 0.0046 1.6E-07 56.2 3.7 27 82-108 27-53 (362)
330 2pjz_A Hypothetical protein ST 95.9 0.0037 1.3E-07 54.3 2.8 25 84-108 30-54 (263)
331 3tw8_B RAS-related protein RAB 95.9 0.0045 1.5E-07 49.3 3.2 24 83-106 8-31 (181)
332 1z47_A CYSA, putative ABC-tran 95.9 0.0044 1.5E-07 56.2 3.4 27 82-108 39-65 (355)
333 2ged_A SR-beta, signal recogni 95.9 0.0057 1.9E-07 49.5 3.8 25 83-107 47-71 (193)
334 2gj8_A MNME, tRNA modification 95.9 0.0051 1.7E-07 49.3 3.5 25 83-107 3-27 (172)
335 3tui_C Methionine import ATP-b 95.9 0.0048 1.7E-07 56.1 3.7 27 82-108 52-78 (366)
336 1nlf_A Regulatory protein REPA 95.9 0.0048 1.6E-07 53.7 3.5 25 84-108 30-54 (279)
337 1v43_A Sugar-binding transport 95.9 0.0048 1.7E-07 56.3 3.7 27 82-108 35-61 (372)
338 2p67_A LAO/AO transport system 95.9 0.007 2.4E-07 54.5 4.7 29 80-108 52-80 (341)
339 2bbs_A Cystic fibrosis transme 95.9 0.0041 1.4E-07 54.8 3.0 27 82-108 62-88 (290)
340 2f7s_A C25KG, RAS-related prot 95.9 0.0049 1.7E-07 51.1 3.4 24 83-106 24-47 (217)
341 2hxs_A RAB-26, RAS-related pro 95.9 0.0059 2E-07 48.5 3.7 24 83-106 5-28 (178)
342 1nrj_B SR-beta, signal recogni 95.8 0.006 2E-07 50.6 3.9 26 83-108 11-36 (218)
343 2ew1_A RAS-related protein RAB 95.8 0.005 1.7E-07 50.8 3.4 25 83-107 25-49 (201)
344 3llu_A RAS-related GTP-binding 95.8 0.0035 1.2E-07 51.3 2.3 25 83-107 19-43 (196)
345 4dsu_A GTPase KRAS, isoform 2B 95.8 0.0052 1.8E-07 49.3 3.4 25 83-107 3-27 (189)
346 1p9r_A General secretion pathw 95.8 0.0069 2.4E-07 56.2 4.5 28 82-109 165-192 (418)
347 1z06_A RAS-related protein RAB 95.8 0.0058 2E-07 49.4 3.6 25 82-106 18-42 (189)
348 2bme_A RAB4A, RAS-related prot 95.8 0.0054 1.9E-07 49.2 3.4 25 83-107 9-33 (186)
349 2oil_A CATX-8, RAS-related pro 95.8 0.0059 2E-07 49.5 3.6 24 84-107 25-48 (193)
350 1pzn_A RAD51, DNA repair and r 95.8 0.0058 2E-07 55.3 3.8 28 81-108 128-155 (349)
351 2y8e_A RAB-protein 6, GH09086P 95.8 0.0052 1.8E-07 48.8 3.2 23 84-106 14-36 (179)
352 1ypw_A Transitional endoplasmi 95.8 0.0024 8.1E-08 64.3 1.4 31 84-114 511-541 (806)
353 1u0j_A DNA replication protein 95.8 0.0072 2.5E-07 52.5 4.2 26 85-110 105-130 (267)
354 3nh6_A ATP-binding cassette SU 95.8 0.003 1E-07 56.1 1.8 27 82-108 78-104 (306)
355 1g29_1 MALK, maltose transport 95.8 0.0051 1.7E-07 56.2 3.4 26 83-108 28-53 (372)
356 2fg5_A RAB-22B, RAS-related pr 95.8 0.0052 1.8E-07 50.0 3.2 26 82-107 21-46 (192)
357 1z08_A RAS-related protein RAB 95.8 0.0059 2E-07 48.1 3.4 25 83-107 5-29 (170)
358 3bwd_D RAC-like GTP-binding pr 95.8 0.0066 2.3E-07 48.4 3.8 26 82-107 6-31 (182)
359 3kkq_A RAS-related protein M-R 95.8 0.0071 2.4E-07 48.4 3.9 25 83-107 17-41 (183)
360 3bc1_A RAS-related protein RAB 95.8 0.0062 2.1E-07 49.0 3.6 24 83-106 10-33 (195)
361 2fh5_B SR-beta, signal recogni 95.8 0.006 2E-07 50.4 3.5 26 82-107 5-30 (214)
362 2chq_A Replication factor C sm 95.8 0.0056 1.9E-07 53.8 3.5 23 86-108 40-62 (319)
363 1z0j_A RAB-22, RAS-related pro 95.7 0.0059 2E-07 48.0 3.3 25 83-107 5-29 (170)
364 1pui_A ENGB, probable GTP-bind 95.7 0.0035 1.2E-07 51.6 2.0 25 82-106 24-48 (210)
365 1ek0_A Protein (GTP-binding pr 95.7 0.0062 2.1E-07 47.8 3.4 24 84-107 3-26 (170)
366 1g16_A RAS-related protein SEC 95.7 0.0065 2.2E-07 47.8 3.5 23 84-106 3-25 (170)
367 2zej_A Dardarin, leucine-rich 95.7 0.005 1.7E-07 49.8 2.8 22 85-106 3-24 (184)
368 1r2q_A RAS-related protein RAB 95.7 0.0056 1.9E-07 48.1 3.0 24 83-106 5-28 (170)
369 2vhj_A Ntpase P4, P4; non- hyd 95.7 0.0062 2.1E-07 54.4 3.6 32 84-115 123-156 (331)
370 1mh1_A RAC1; GTP-binding, GTPa 95.7 0.0065 2.2E-07 48.6 3.5 24 83-106 4-27 (186)
371 2npi_A Protein CLP1; CLP1-PCF1 95.7 0.005 1.7E-07 57.8 3.1 27 82-108 136-162 (460)
372 1sxj_B Activator 1 37 kDa subu 95.7 0.0065 2.2E-07 53.4 3.8 23 86-108 44-66 (323)
373 3d31_A Sulfate/molybdate ABC t 95.7 0.0039 1.4E-07 56.4 2.3 27 82-108 24-50 (348)
374 2erx_A GTP-binding protein DI- 95.7 0.0066 2.3E-07 47.7 3.5 23 84-106 3-25 (172)
375 3t1o_A Gliding protein MGLA; G 95.7 0.0057 1.9E-07 49.4 3.1 26 83-108 13-38 (198)
376 3gd7_A Fusion complex of cysti 95.7 0.0059 2E-07 56.1 3.5 25 82-106 45-69 (390)
377 2iwr_A Centaurin gamma 1; ANK 95.7 0.0057 1.9E-07 48.8 3.1 26 82-107 5-30 (178)
378 3k53_A Ferrous iron transport 95.7 0.0065 2.2E-07 52.7 3.6 24 84-107 3-26 (271)
379 1a5t_A Delta prime, HOLB; zinc 95.7 0.0088 3E-07 53.6 4.5 29 83-111 23-51 (334)
380 3kta_A Chromosome segregation 95.7 0.0073 2.5E-07 48.7 3.7 24 86-109 28-51 (182)
381 3tkl_A RAS-related protein RAB 95.7 0.0071 2.4E-07 48.9 3.6 25 83-107 15-39 (196)
382 2v3c_C SRP54, signal recogniti 95.6 0.0057 2E-07 57.0 3.2 26 83-108 98-123 (432)
383 1r6b_X CLPA protein; AAA+, N-t 95.6 0.0064 2.2E-07 60.6 3.8 28 86-113 490-517 (758)
384 3q85_A GTP-binding protein REM 95.6 0.0076 2.6E-07 47.4 3.5 22 85-106 3-24 (169)
385 2atv_A RERG, RAS-like estrogen 95.6 0.0085 2.9E-07 48.8 3.9 26 82-107 26-51 (196)
386 1m7b_A RND3/RHOE small GTP-bin 95.6 0.0074 2.5E-07 48.6 3.5 25 83-107 6-30 (184)
387 2j37_W Signal recognition part 95.6 0.0081 2.8E-07 57.0 4.2 27 82-108 99-125 (504)
388 3t5g_A GTP-binding protein RHE 95.6 0.0065 2.2E-07 48.6 3.1 24 83-106 5-28 (181)
389 1svi_A GTP-binding protein YSX 95.6 0.0083 2.8E-07 48.6 3.7 24 83-106 22-45 (195)
390 3hr8_A Protein RECA; alpha and 95.6 0.0078 2.7E-07 54.6 3.8 26 83-108 60-85 (356)
391 2efe_B Small GTP-binding prote 95.6 0.0078 2.7E-07 48.0 3.4 24 83-106 11-34 (181)
392 2il1_A RAB12; G-protein, GDP, 95.6 0.0072 2.5E-07 49.2 3.2 23 84-106 26-48 (192)
393 3q72_A GTP-binding protein RAD 95.6 0.0075 2.6E-07 47.3 3.2 21 85-105 3-23 (166)
394 2pt7_A CAG-ALFA; ATPase, prote 95.5 0.0042 1.4E-07 55.8 1.8 26 83-108 170-195 (330)
395 2bov_A RAla, RAS-related prote 95.5 0.0093 3.2E-07 48.6 3.9 25 83-107 13-37 (206)
396 1ls1_A Signal recognition part 95.5 0.0099 3.4E-07 52.4 4.2 26 83-108 97-122 (295)
397 3nbx_X ATPase RAVA; AAA+ ATPas 95.5 0.0044 1.5E-07 58.8 2.0 25 85-109 42-66 (500)
398 1moz_A ARL1, ADP-ribosylation 95.5 0.0062 2.1E-07 48.7 2.7 24 82-105 16-39 (183)
399 1m2o_B GTP-binding protein SAR 95.5 0.0081 2.8E-07 48.9 3.4 24 83-106 22-45 (190)
400 1oxx_K GLCV, glucose, ABC tran 95.5 0.0041 1.4E-07 56.4 1.7 27 82-108 29-55 (353)
401 2g6b_A RAS-related protein RAB 95.5 0.0087 3E-07 47.6 3.4 25 83-107 9-33 (180)
402 3reg_A RHO-like small GTPase; 95.5 0.0085 2.9E-07 48.6 3.4 26 82-107 21-46 (194)
403 2cxx_A Probable GTP-binding pr 95.5 0.0076 2.6E-07 48.4 3.1 22 85-106 2-23 (190)
404 1zj6_A ADP-ribosylation factor 95.5 0.01 3.4E-07 47.9 3.8 25 82-106 14-38 (187)
405 1fzq_A ADP-ribosylation factor 95.5 0.0097 3.3E-07 47.9 3.7 26 82-107 14-39 (181)
406 4dey_A Voltage-dependent L-typ 95.5 0.24 8.3E-06 44.2 12.9 23 273-295 304-326 (337)
407 1x3s_A RAS-related protein RAB 95.4 0.0078 2.7E-07 48.6 3.0 25 83-107 14-38 (195)
408 1ksh_A ARF-like protein 2; sma 95.4 0.0099 3.4E-07 47.7 3.6 25 82-106 16-40 (186)
409 1r8s_A ADP-ribosylation factor 95.4 0.011 3.7E-07 46.3 3.7 22 86-107 2-23 (164)
410 4bas_A ADP-ribosylation factor 95.4 0.0092 3.1E-07 48.4 3.3 24 83-106 16-39 (199)
411 3pqc_A Probable GTP-binding pr 95.4 0.01 3.4E-07 47.9 3.5 23 85-107 24-46 (195)
412 3cbq_A GTP-binding protein REM 95.3 0.0081 2.8E-07 49.2 2.8 23 83-105 22-44 (195)
413 2fna_A Conserved hypothetical 95.3 0.013 4.3E-07 52.1 4.3 31 85-115 31-63 (357)
414 1j8m_F SRP54, signal recogniti 95.3 0.01 3.4E-07 52.5 3.5 25 84-108 98-122 (297)
415 2b6h_A ADP-ribosylation factor 95.3 0.011 3.8E-07 48.1 3.6 25 82-106 27-51 (192)
416 3lda_A DNA repair protein RAD5 95.3 0.0086 2.9E-07 55.2 3.1 24 83-106 177-200 (400)
417 1qvr_A CLPB protein; coiled co 95.3 0.0082 2.8E-07 60.8 3.3 26 83-108 190-215 (854)
418 2bcg_Y Protein YP2, GTP-bindin 95.3 0.011 3.7E-07 48.5 3.4 24 83-106 7-30 (206)
419 2xtp_A GTPase IMAP family memb 95.3 0.011 3.8E-07 50.6 3.6 25 83-107 21-45 (260)
420 2zts_A Putative uncharacterize 95.3 0.012 4E-07 49.7 3.7 23 84-106 30-52 (251)
421 2zr9_A Protein RECA, recombina 95.3 0.01 3.6E-07 53.6 3.5 34 83-116 60-98 (349)
422 1tq4_A IIGP1, interferon-induc 95.3 0.011 3.6E-07 54.8 3.6 23 84-106 69-91 (413)
423 2oap_1 GSPE-2, type II secreti 95.3 0.007 2.4E-07 57.6 2.4 27 82-108 258-284 (511)
424 1f6b_A SAR1; gtpases, N-termin 95.2 0.01 3.6E-07 48.6 3.2 25 82-106 23-47 (198)
425 2rcn_A Probable GTPase ENGC; Y 95.2 0.011 3.6E-07 53.7 3.5 25 83-107 214-238 (358)
426 4gzl_A RAS-related C3 botulinu 95.2 0.012 4.2E-07 48.3 3.6 25 82-106 28-52 (204)
427 2xxa_A Signal recognition part 95.2 0.015 5.1E-07 54.2 4.5 27 82-108 98-124 (433)
428 2r8r_A Sensor protein; KDPD, P 95.2 0.017 5.9E-07 48.8 4.4 33 84-116 6-43 (228)
429 2yv5_A YJEQ protein; hydrolase 95.2 0.012 4.2E-07 52.0 3.6 25 83-108 164-188 (302)
430 3iby_A Ferrous iron transport 95.2 0.011 3.7E-07 51.0 3.2 23 85-107 2-24 (256)
431 2j0v_A RAC-like GTP-binding pr 95.2 0.014 4.7E-07 48.1 3.7 26 82-107 7-32 (212)
432 2j1l_A RHO-related GTP-binding 95.2 0.012 4.2E-07 48.7 3.4 24 83-106 33-56 (214)
433 1v5w_A DMC1, meiotic recombina 95.1 0.014 4.8E-07 52.5 4.0 26 82-107 120-145 (343)
434 1ojl_A Transcriptional regulat 95.1 0.012 4.2E-07 52.0 3.5 25 84-108 25-49 (304)
435 2j9r_A Thymidine kinase; TK1, 95.1 0.019 6.5E-07 48.1 4.5 27 82-108 26-52 (214)
436 3k1j_A LON protease, ATP-depen 95.1 0.01 3.5E-07 57.7 3.2 26 84-109 60-85 (604)
437 2o52_A RAS-related protein RAB 95.1 0.012 4E-07 48.2 3.1 24 83-106 24-47 (200)
438 2qag_B Septin-6, protein NEDD5 95.1 0.011 3.9E-07 54.7 3.2 27 81-107 37-65 (427)
439 2q3h_A RAS homolog gene family 95.1 0.015 5.1E-07 47.4 3.6 24 83-106 19-42 (201)
440 1zcb_A G alpha I/13; GTP-bindi 95.1 0.014 4.7E-07 53.1 3.7 28 82-109 31-58 (362)
441 1r6b_X CLPA protein; AAA+, N-t 95.1 0.017 5.7E-07 57.6 4.7 27 82-108 205-231 (758)
442 3cph_A RAS-related protein SEC 95.1 0.016 5.4E-07 47.6 3.8 24 83-106 19-42 (213)
443 2fu5_C RAS-related protein RAB 95.1 0.008 2.7E-07 48.1 1.9 23 84-106 8-30 (183)
444 2qu8_A Putative nucleolar GTP- 95.0 0.016 5.5E-07 48.5 3.8 24 83-106 28-51 (228)
445 4dcu_A GTP-binding protein ENG 95.0 0.012 4E-07 55.1 3.2 31 76-106 15-45 (456)
446 2ffh_A Protein (FFH); SRP54, s 95.0 0.017 5.7E-07 53.6 4.2 26 83-108 97-122 (425)
447 1w5s_A Origin recognition comp 95.0 0.014 4.7E-07 53.3 3.6 26 83-108 49-76 (412)
448 2hup_A RAS-related protein RAB 95.0 0.014 4.7E-07 47.9 3.3 23 84-106 29-51 (201)
449 1u94_A RECA protein, recombina 95.0 0.015 5.1E-07 52.7 3.7 33 83-115 62-99 (356)
450 1zbd_A Rabphilin-3A; G protein 95.0 0.016 5.3E-07 47.3 3.5 23 84-106 8-30 (203)
451 2atx_A Small GTP binding prote 95.0 0.011 3.9E-07 47.8 2.6 25 83-107 17-41 (194)
452 3pxi_A Negative regulator of g 94.9 0.018 6E-07 57.5 4.4 33 86-118 523-560 (758)
453 2obl_A ESCN; ATPase, hydrolase 94.9 0.016 5.4E-07 52.4 3.6 31 79-109 66-96 (347)
454 2z43_A DNA repair and recombin 94.9 0.015 5.2E-07 51.8 3.5 27 82-108 105-131 (324)
455 1wf3_A GTP-binding protein; GT 94.9 0.015 5.3E-07 51.3 3.4 24 83-106 6-29 (301)
456 1ko7_A HPR kinase/phosphatase; 94.9 0.02 6.8E-07 50.9 4.0 33 83-116 143-175 (314)
457 1ega_A Protein (GTP-binding pr 94.8 0.015 5.2E-07 51.3 3.3 24 83-106 7-30 (301)
458 3upu_A ATP-dependent DNA helic 94.8 0.017 5.8E-07 54.1 3.8 23 86-108 47-69 (459)
459 3ozx_A RNAse L inhibitor; ATP 94.8 0.015 5.2E-07 55.6 3.5 26 83-108 24-49 (538)
460 2dpy_A FLII, flagellum-specifi 94.8 0.018 6.1E-07 53.7 3.9 31 79-109 152-182 (438)
461 3i8s_A Ferrous iron transport 94.8 0.018 6.1E-07 50.1 3.7 25 83-107 2-26 (274)
462 2x77_A ADP-ribosylation factor 94.8 0.013 4.5E-07 47.2 2.6 24 82-105 20-43 (189)
463 3euj_A Chromosome partition pr 94.8 0.016 5.4E-07 54.7 3.3 24 85-108 30-53 (483)
464 1u0l_A Probable GTPase ENGC; p 94.8 0.016 5.5E-07 51.2 3.2 23 84-106 169-191 (301)
465 2cjw_A GTP-binding protein GEM 94.8 0.021 7.3E-07 46.4 3.8 24 84-107 6-29 (192)
466 2i1q_A DNA repair and recombin 94.8 0.017 5.9E-07 51.3 3.4 26 82-107 96-121 (322)
467 3b5x_A Lipid A export ATP-bind 94.7 0.016 5.6E-07 55.9 3.5 27 82-108 367-393 (582)
468 3a1s_A Iron(II) transport prot 94.7 0.017 5.8E-07 49.8 3.2 23 84-106 5-27 (258)
469 1f2t_A RAD50 ABC-ATPase; DNA d 94.7 0.022 7.6E-07 44.7 3.6 24 84-107 23-46 (149)
470 3e1s_A Exodeoxyribonuclease V, 94.7 0.019 6.3E-07 55.5 3.8 25 84-108 204-228 (574)
471 3bh0_A DNAB-like replicative h 94.7 0.022 7.6E-07 50.6 4.1 27 82-108 66-92 (315)
472 3b1v_A Ferrous iron uptake tra 94.7 0.02 6.7E-07 49.9 3.6 24 84-107 3-26 (272)
473 1yqt_A RNAse L inhibitor; ATP- 94.7 0.017 6E-07 55.2 3.6 27 82-108 45-71 (538)
474 3q3j_B RHO-related GTP-binding 94.7 0.022 7.7E-07 47.2 3.8 25 83-107 26-50 (214)
475 3b60_A Lipid A export ATP-bind 94.7 0.015 5.1E-07 56.2 3.0 27 82-108 367-393 (582)
476 3gj0_A GTP-binding nuclear pro 94.6 0.017 5.7E-07 48.0 2.8 26 83-108 14-40 (221)
477 2qnr_A Septin-2, protein NEDD5 94.6 0.018 6E-07 50.9 3.0 23 84-106 18-40 (301)
478 1knx_A Probable HPR(Ser) kinas 94.5 0.016 5.6E-07 51.4 2.6 33 83-116 146-178 (312)
479 1qvr_A CLPB protein; coiled co 94.5 0.017 5.7E-07 58.5 2.9 24 85-108 589-612 (854)
480 2r6a_A DNAB helicase, replicat 94.4 0.027 9.3E-07 52.6 4.1 27 82-108 201-227 (454)
481 3ozx_A RNAse L inhibitor; ATP 94.4 0.018 6.1E-07 55.1 2.9 27 82-108 292-318 (538)
482 4djt_A GTP-binding nuclear pro 94.4 0.0098 3.4E-07 49.2 0.9 25 82-106 9-33 (218)
483 1ni3_A YCHF GTPase, YCHF GTP-b 94.4 0.025 8.4E-07 51.9 3.7 24 83-106 19-42 (392)
484 2yl4_A ATP-binding cassette SU 94.4 0.016 5.4E-07 56.2 2.5 27 82-108 368-394 (595)
485 3j16_B RLI1P; ribosome recycli 94.4 0.024 8E-07 55.1 3.6 26 83-108 102-127 (608)
486 2g3y_A GTP-binding protein GEM 94.3 0.028 9.5E-07 46.9 3.6 23 84-106 37-59 (211)
487 1yqt_A RNAse L inhibitor; ATP- 94.3 0.024 8.2E-07 54.3 3.6 26 83-108 311-336 (538)
488 1tf7_A KAIC; homohexamer, hexa 94.3 0.021 7.1E-07 54.5 3.1 24 82-105 37-62 (525)
489 2dby_A GTP-binding protein; GD 94.3 0.023 7.7E-07 51.8 3.1 23 85-107 2-24 (368)
490 3qf4_B Uncharacterized ABC tra 94.3 0.018 6.2E-07 55.9 2.6 27 82-108 379-405 (598)
491 2yc2_C IFT27, small RAB-relate 94.3 0.0089 3.1E-07 48.8 0.4 25 83-107 19-43 (208)
492 3cpj_B GTP-binding protein YPT 94.2 0.031 1.1E-06 46.5 3.7 24 84-107 13-36 (223)
493 3iev_A GTP-binding protein ERA 94.2 0.026 9E-07 49.9 3.3 22 85-106 11-32 (308)
494 1t9h_A YLOQ, probable GTPase E 94.2 0.0095 3.3E-07 52.9 0.4 24 83-106 172-195 (307)
495 4dhe_A Probable GTP-binding pr 94.1 0.015 5.1E-07 48.2 1.4 24 84-107 29-52 (223)
496 4a82_A Cystic fibrosis transme 94.1 0.015 5.2E-07 56.1 1.6 27 82-108 365-391 (578)
497 3bk7_A ABC transporter ATP-bin 94.1 0.029 9.9E-07 54.5 3.6 26 83-108 381-406 (607)
498 1xp8_A RECA protein, recombina 94.1 0.031 1E-06 50.8 3.5 34 83-116 73-111 (366)
499 3th5_A RAS-related C3 botulinu 93.1 0.0091 3.1E-07 48.9 0.0 25 82-106 28-52 (204)
500 3j16_B RLI1P; ribosome recycli 94.1 0.027 9.4E-07 54.7 3.3 24 85-108 379-402 (608)
No 1
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=6.5e-40 Score=281.94 Aligned_cols=206 Identities=39% Similarity=0.721 Sum_probs=176.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~ 161 (303)
...|.++|+|+|||||||+|+.|+++||+.+|++++++++.+..+++.|..+++++..|..+|++.+..++.+++.+..+
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~ 85 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADC 85 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGG
T ss_pred ccccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred CCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH----hhhccC
Q 022042 162 QENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTKR 237 (303)
Q Consensus 162 ~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~----~rL~~r 237 (303)
.++||+||||++..|++.|.+.+..+|.||+|++|++++++|+.+|+.|+.+|+.||..|+||..++++ ++|.+|
T Consensus 86 -~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R 164 (230)
T 3gmt_A 86 -ANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQR 164 (230)
T ss_dssp -TTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred -CCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccC
Confidence 468999999999999999998888899999999999999999999999999999999999999988754 578899
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhhc-------------ceEEEcCCCCHHHHHHHHHHHHH
Q 022042 238 FDDTEEKVKLRLKTHHHNVEAVLSLYED-------------VTVEVNGSVNKEDVFAQIDVALT 288 (303)
Q Consensus 238 ~~d~~e~~~~r~~~~~~~~~~~~~~~~~-------------~~~~Id~~~s~eev~~~I~~~l~ 288 (303)
.||.+|.+++|++.|+++..++.++|.. .++.||+++++++|+++|.+++.
T Consensus 165 ~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~ 228 (230)
T 3gmt_A 165 DDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQV 228 (230)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC----------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999984 68899999999999999998774
No 2
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=100.00 E-value=2.1e-39 Score=276.28 Aligned_cols=198 Identities=35% Similarity=0.724 Sum_probs=184.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~ 164 (303)
|+|+|.|||||||+|+|+.|+++||++||++++++|+.+..+++.|..++.++..|..+|++++..++.+++.+ .+
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~----~~ 76 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK----HG 76 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS----SS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc----CC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999998865 46
Q ss_pred cEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042 165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD 240 (303)
Q Consensus 165 ~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d 240 (303)
+||+||||++..|++.|.. .+..++.||+|++|++++++|+..|+.++.+|+.||..++||.. ..++.+|.||
T Consensus 77 ~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~---g~~l~~r~DD 153 (206)
T 3sr0_A 77 NVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPP---GVKVIQREDD 153 (206)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCT---TCCCBCCGGG
T ss_pred ceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCC---CceecccCCC
Confidence 7999999999999988754 56789999999999999999999999999999999999999863 4678899999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042 241 TEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN 289 (303)
Q Consensus 241 ~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~ 289 (303)
.+|.+++|++.|+++..++.++|.. .++.||+++++++|+++|.++|.+
T Consensus 154 ~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 154 KPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD 204 (206)
T ss_dssp SHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 9999999999999999999999976 688999999999999999998854
No 3
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=100.00 E-value=4.9e-37 Score=263.07 Aligned_cols=191 Identities=32% Similarity=0.560 Sum_probs=171.0
Q ss_pred hhhcccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHH
Q 022042 76 VLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKER 155 (303)
Q Consensus 76 ~~~~~~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~ 155 (303)
......+++++|+|.|||||||+|+|+.|+++||+.+|++++++|..+..+++.|..+.+++..|..+|++.+..++.++
T Consensus 21 ~~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~ 100 (217)
T 3umf_A 21 MTDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEA 100 (217)
T ss_dssp ---CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred ccchhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 33444567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhc
Q 022042 156 LSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLT 235 (303)
Q Consensus 156 l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~ 235 (303)
+.+..+..++||+||||++..|++.|.+....++++|+|++|++++.+|+..|.. +.
T Consensus 101 l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~-----------------------~~ 157 (217)
T 3umf_A 101 MIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAE-----------------------TS 157 (217)
T ss_dssp HHHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC---------------------------
T ss_pred HhhccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccc-----------------------cC
Confidence 9776666789999999999999999999888999999999999999999999852 34
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042 236 KRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN 289 (303)
Q Consensus 236 ~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~ 289 (303)
+|.||.+|.+++|++.|+++..++.++|.. .++.||+++++++|+++|.+.|++
T Consensus 158 ~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 158 NRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK 213 (217)
T ss_dssp --CHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 677888999999999999999999999975 688999999999999999998865
No 4
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=100.00 E-value=2.1e-34 Score=251.86 Aligned_cols=207 Identities=31% Similarity=0.570 Sum_probs=188.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~ 160 (303)
..+|++|+|+|+|||||||+|+.|+++||+.++++++++++....+++.+..+.+++..|..++++.+..++...+....
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~ 105 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQ 105 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGG
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhccc
Confidence 45788999999999999999999999999999999999999988899999999999999999999999999999887765
Q ss_pred CCCCcEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH----h
Q 022042 161 SQENGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----A 232 (303)
Q Consensus 161 ~~~~~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~----~ 232 (303)
+ +.+||+||||++..++..|.+ .+..||.+|+|++|++++++|+.+|+.++.+|+.||..|+||..++.+ +
T Consensus 106 ~-~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~ 184 (243)
T 3tlx_A 106 C-KKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNE 184 (243)
T ss_dssp G-SSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCC
T ss_pred c-cCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccc
Confidence 4 678999999999999887654 456799999999999999999999999999999999999999887654 4
Q ss_pred hhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHH
Q 022042 233 RLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALT 288 (303)
Q Consensus 233 rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~ 288 (303)
+|.+|.+|.++.+++|+..|+++..++.++|.. .++.||++.++++|+++|.++|.
T Consensus 185 ~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 185 PLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp BCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 577888999999999999999999999999875 68899999999999999998874
No 5
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=100.00 E-value=3.5e-34 Score=246.81 Aligned_cols=219 Identities=72% Similarity=1.116 Sum_probs=195.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~ 161 (303)
.+|++|+|+|+|||||||+++.|+++||+.++++|++++.....++..|..+.+++..|..++++.+..++.+.+.....
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA 82 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc
Confidence 35678999999999999999999999999999999999998888889999999999999999998888777777654333
Q ss_pred CCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCc
Q 022042 162 QENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDT 241 (303)
Q Consensus 162 ~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~ 241 (303)
.+++||+||||++..++..+...+..||++|||+++++++.+|+..|..++.+|+.|+..++||..+++++++..+.++.
T Consensus 83 ~~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~ 162 (222)
T 1zak_A 83 QENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDT 162 (222)
T ss_dssp HHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCC
T ss_pred cCCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCCC
Confidence 34689999999999888888877778999999999999999999999889999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHhhhhcccc
Q 022042 242 EEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKSALGS 300 (303)
Q Consensus 242 ~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~~~~~~~~ 300 (303)
.+.+++|+..|+.+..++.+.|...++.||++.++++++++|.+.|...+.++.....+
T Consensus 163 ~~~i~~Rl~~~~~~~~~l~~~y~~~~~~Id~~~~~~ev~~~I~~~l~~~l~~~~~~~~~ 221 (222)
T 1zak_A 163 EEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDELLGSILEKKNEMVSS 221 (222)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTCCCEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcEEEEECCCCHHHHHHHHHHHHHhhcccccccCCC
Confidence 89999999999999999988898788899999999999999999999988877665543
No 6
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=2.1e-33 Score=241.27 Aligned_cols=206 Identities=40% Similarity=0.704 Sum_probs=181.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~ 160 (303)
+.++++|+|+|+|||||||+|+.|+++||+.++++|+++++....+++.+..+++++..|..++++....++...+....
T Consensus 2 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~ 81 (217)
T 3be4_A 2 NSKKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGV 81 (217)
T ss_dssp GGGCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc
Confidence 34568999999999999999999999999999999999999888899999999999999999999988888888877644
Q ss_pred CCCCcEEEcCCCCCHHHHHHHH----HhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH----h
Q 022042 161 SQENGWLLDGYPRSLSQATALK----KYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----A 232 (303)
Q Consensus 161 ~~~~~~Vldg~p~~~~~~~~l~----~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~----~ 232 (303)
+ +.+||+||||++..++..+. ..+..||++|||++|++++.+|+..|..++.+|+.||..|+||..++.+ +
T Consensus 82 ~-~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~ 160 (217)
T 3be4_A 82 C-VNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGE 160 (217)
T ss_dssp T-TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred c-CCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCcccccccccc
Confidence 4 67899999999988777665 3567899999999999999999999999999999999999999987765 3
Q ss_pred hhccCCCCcHHHHHHHHHHHHHHHHHHHHHhh--cceEEEcCCCCHHHHHHHHHHHH
Q 022042 233 RLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE--DVTVEVNGSVNKEDVFAQIDVAL 287 (303)
Q Consensus 233 rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~--~~~~~Id~~~s~eev~~~I~~~l 287 (303)
+|..+.++..+.+++|+..|++...++.++|. ..++.||++.++++|+++|.+.|
T Consensus 161 ~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 217 (217)
T 3be4_A 161 PLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217 (217)
T ss_dssp BCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence 77788888899999999999999999988886 36889999999999999998753
No 7
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=100.00 E-value=2.2e-33 Score=240.65 Aligned_cols=204 Identities=42% Similarity=0.744 Sum_probs=186.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~ 164 (303)
|+|+|+|+|||||||+|+.|+++||+.++++|+++++....+++.+..+.+++..+..++++.+..++...+....+ +.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~-~~ 79 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDC-ER 79 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGG-TT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccc-cC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999888877654 67
Q ss_pred cEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH----hhhcc
Q 022042 165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTK 236 (303)
Q Consensus 165 ~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~----~rL~~ 236 (303)
++|+||||++..++..+.+ .+..+|.+|||++|++++.+|+.+|+.|+.+|+.||..++||..++++ +++..
T Consensus 80 ~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~ 159 (216)
T 3dl0_A 80 GFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQ 159 (216)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEEC
T ss_pred CEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccC
Confidence 8999999999988877665 456799999999999999999999999999999999999999987764 46778
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042 237 RFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN 289 (303)
Q Consensus 237 r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~ 289 (303)
|.++.++.+++|+..|.+...++.++|.. .+++||+++++++++++|.+.|.+
T Consensus 160 r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3dl0_A 160 RADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG 214 (216)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 88999999999999999999999999875 688999999999999999998864
No 8
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=100.00 E-value=5.5e-33 Score=238.01 Aligned_cols=204 Identities=39% Similarity=0.712 Sum_probs=185.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~ 164 (303)
|+|+|+|+|||||||+|+.|++++|+.++++|+++++....+++.+..+.+++..+..++++.+..++...+....+ +.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~-~~ 79 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDC-QK 79 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGG-TT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccC-CC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999888877554 67
Q ss_pred cEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH----hhhcc
Q 022042 165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTK 236 (303)
Q Consensus 165 ~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~----~rL~~ 236 (303)
+||+||||+...++..+.. .+..+|.+|||++|++++.+|+.+|+.|+.+|+.||..++||..++.+ .++..
T Consensus 80 ~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~ 159 (216)
T 3fb4_A 80 GFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQ 159 (216)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEEC
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCcccc
Confidence 8999999999988877765 456789999999999999999999999999999999999999887764 45677
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042 237 RFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN 289 (303)
Q Consensus 237 r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~ 289 (303)
|.++.++.+++|++.|.+...++.++|.. .+++||+++++++++++|.+.|.+
T Consensus 160 r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3fb4_A 160 RIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214 (216)
T ss_dssp CGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 88889999999999999999999998875 688999999999999999998864
No 9
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=100.00 E-value=1.2e-32 Score=235.95 Aligned_cols=202 Identities=43% Similarity=0.788 Sum_probs=182.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~ 164 (303)
|+|+|+|+|||||||+|+.|++++|+.++++|+++++.+..+++.+..+++++..+..++++.+..++...+....+ +.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~-~~ 79 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDC-RN 79 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGG-GG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc-CC
Confidence 47899999999999999999999999999999999998888999999999999999999999998998888876433 46
Q ss_pred cEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH----hhhccCCCC
Q 022042 165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTKRFDD 240 (303)
Q Consensus 165 ~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~----~rL~~r~~d 240 (303)
+||+||||+...++..|...+..||++|||+++++++++|+.+|..++.+|+.||+.++||..++.+ ++|..|.++
T Consensus 80 ~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~dd 159 (214)
T 1e4v_A 80 GFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDD 159 (214)
T ss_dssp CEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTTC
T ss_pred CEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCCC
Confidence 7999999999999888888777899999999999999999999988899999999999999987743 567888899
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhh-------cceEEEcCCCCHHHHHHHHHHHH
Q 022042 241 TEEKVKLRLKTHHHNVEAVLSLYE-------DVTVEVNGSVNKEDVFAQIDVAL 287 (303)
Q Consensus 241 ~~e~~~~r~~~~~~~~~~~~~~~~-------~~~~~Id~~~s~eev~~~I~~~l 287 (303)
..+.+.+|++.|.....++.++|. ..++.||+++++++|+++|.+.|
T Consensus 160 ~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l 213 (214)
T 1e4v_A 160 QEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213 (214)
T ss_dssp SHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 899999999999999999988887 46889999999999999998876
No 10
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=100.00 E-value=2.5e-31 Score=230.79 Aligned_cols=207 Identities=33% Similarity=0.648 Sum_probs=183.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~ 162 (303)
.+++|+|+|+|||||||+|+.|+++||+.++++|+++++....+++.+..+++++..|..++++....++...+....+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~- 93 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPC- 93 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGG-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc-
Confidence 4578999999999999999999999999999999999998888889999999999999999999988888888876543
Q ss_pred CCcEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHh----hh
Q 022042 163 ENGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAA----RL 234 (303)
Q Consensus 163 ~~~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~----rL 234 (303)
+++||+||||++..++..+.+ .+..+|++|||+++++++.+|+..|..++.+|+.||..|+||..+++++ +|
T Consensus 94 ~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l 173 (233)
T 1ak2_A 94 KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPL 173 (233)
T ss_dssp TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBC
T ss_pred cCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCccccccccccccc
Confidence 578999999999888775543 3557999999999999999999999999999999999999999877643 45
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHHHhh--cceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042 235 TKRFDDTEEKVKLRLKTHHHNVEAVLSLYE--DVTVEVNGSVNKEDVFAQIDVALTNL 290 (303)
Q Consensus 235 ~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~--~~~~~Id~~~s~eev~~~I~~~l~~~ 290 (303)
..|.++..+.+.+|+..|+....++.++|. ..++.||+++++++|+++|.+.|.++
T Consensus 174 ~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~~ 231 (233)
T 1ak2_A 174 IRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA 231 (233)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence 677888889999999999999889888886 36889999999999999999998765
No 11
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=100.00 E-value=1.8e-31 Score=229.57 Aligned_cols=206 Identities=36% Similarity=0.662 Sum_probs=179.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHc-CCC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLS-QPD 160 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~-~~~ 160 (303)
+++++|+|+|+|||||||+|+.|+++||+.++++|+++++....+++.+..+++++..|..++++.+..++.+.+. ...
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~ 81 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPA 81 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhccc
Confidence 3568999999999999999999999999999999999999888889999999999999999999988888888776 332
Q ss_pred CCCCcEEEcCCCCCHHHHHHHH----HhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH----h
Q 022042 161 SQENGWLLDGYPRSLSQATALK----KYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----A 232 (303)
Q Consensus 161 ~~~~~~Vldg~p~~~~~~~~l~----~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~----~ 232 (303)
.+++||+||||++..++..+. ..+..||++|||+++++++++|+.+|..++.+|+.||..|+||..++++ +
T Consensus 82 -~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~ 160 (220)
T 1aky_A 82 -CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGE 160 (220)
T ss_dssp -GGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred -cCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCccccccccccc
Confidence 257899999999988776553 3467899999999999999999999998999999999999999876432 3
Q ss_pred hhccCCCCcHHHHHHHHHHHHHHHHHHHHHhh--cceEEEcCCCCHHHHHHHHHHHHH
Q 022042 233 RLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE--DVTVEVNGSVNKEDVFAQIDVALT 288 (303)
Q Consensus 233 rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~--~~~~~Id~~~s~eev~~~I~~~l~ 288 (303)
+|..|.++..+.+.+|++.|.+...++.++|. +.++.||++.++++|+++|.+.|.
T Consensus 161 ~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 218 (220)
T 1aky_A 161 ALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218 (220)
T ss_dssp BCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 56778888889999999999999888888885 368899999999999999998774
No 12
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.97 E-value=1.1e-30 Score=225.75 Aligned_cols=208 Identities=34% Similarity=0.627 Sum_probs=178.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~ 160 (303)
..+|++|+|+|+|||||||+++.|++++|+.++++|++++.....+++.|..+.+++..|..++++....++.+++.+.
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~- 82 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL- 82 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC-
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc-
Confidence 4567899999999999999999999999999999999999988888889999999999898889888777777777653
Q ss_pred CCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH----hhhcc
Q 022042 161 SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTK 236 (303)
Q Consensus 161 ~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~----~rL~~ 236 (303)
.+.+||+|+||.+..+...+... ..+|++|||+++++++.+|+.+|..++.+|+.|+..++||..++++ ++|.+
T Consensus 83 -~~~~~vid~~~~~~~~~~~l~~~-~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~ 160 (227)
T 1zd8_A 83 -TQYSWLLDGFPRTLPQAEALDRA-YQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQ 160 (227)
T ss_dssp -TTSCEEEESCCCSHHHHHHHHTT-SCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBC
T ss_pred -cCCCEEEeCCCCCHHHHHHHHHh-cCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccC
Confidence 35789999999998887766654 4689999999999999999999988888899999999999987764 46777
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHhh--cceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042 237 RFDDTEEKVKLRLKTHHHNVEAVLSLYE--DVTVEVNGSVNKEDVFAQIDVALTNLLE 292 (303)
Q Consensus 237 r~~d~~e~~~~r~~~~~~~~~~~~~~~~--~~~~~Id~~~s~eev~~~I~~~l~~~l~ 292 (303)
|.++..+.+++|+..|.....++.++|. +.++.||++ ++++|+++|.+.|.+.+.
T Consensus 161 r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~~~ 217 (227)
T 1zd8_A 161 REDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTKVP 217 (227)
T ss_dssp CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhhcC
Confidence 7777889999999999999999888886 468899999 999999999999876543
No 13
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.97 E-value=4.3e-31 Score=227.92 Aligned_cols=201 Identities=33% Similarity=0.612 Sum_probs=173.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~ 164 (303)
|+|+|+|+|||||||+++.|+++||+.++++|+++++.+..+++.+..+++++..|..++++.+..++...+.... +.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~--g~ 78 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKG--KD 78 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHC--TT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhccc--CC
Confidence 4799999999999999999999999999999999999877788899999999999988899888888877776533 57
Q ss_pred cEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCC-CCceecccCCCCCchH-H----Hhhh
Q 022042 165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPV-TGKIYHVKYSPPETDE-I----AARL 234 (303)
Q Consensus 165 ~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~-~g~~~~~~~~~p~~~~-i----~~rL 234 (303)
+||+||||++..++..+.. .+..||++|||++|++++.+|+.+|..++. +|+.||..|+||..++ + .++|
T Consensus 79 ~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l 158 (223)
T 2xb4_A 79 GWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGAL 158 (223)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBE
T ss_pred eEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCcccccccccccccc
Confidence 8999999999888877754 366899999999999999999999987777 9999999999998766 2 2477
Q ss_pred ccCCCCcHH-HHHHHHHHHHHHHHHHHH---Hhhc-------ceEEEcCCCCHHHHHHHHHHHH
Q 022042 235 TKRFDDTEE-KVKLRLKTHHHNVEAVLS---LYED-------VTVEVNGSVNKEDVFAQIDVAL 287 (303)
Q Consensus 235 ~~r~~d~~e-~~~~r~~~~~~~~~~~~~---~~~~-------~~~~Id~~~s~eev~~~I~~~l 287 (303)
.+|.+|..+ .+++|+..|++...++.+ +|.. .++.||+++++++|+++|.+.|
T Consensus 159 ~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l 222 (223)
T 2xb4_A 159 SARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222 (223)
T ss_dssp ECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 788777778 999999999888766666 6643 5789999999999999998876
No 14
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.95 E-value=1.7e-26 Score=194.17 Aligned_cols=187 Identities=39% Similarity=0.668 Sum_probs=155.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~ 161 (303)
.++++|+|+|+|||||||+|+.|++++|+.+++.|++++.....++..+..+.+++..|..++++.....+...+.....
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 86 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVN 86 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccc
Confidence 46789999999999999999999999999999999999998888888999999999888888888777777666655444
Q ss_pred CCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCc
Q 022042 162 QENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDT 241 (303)
Q Consensus 162 ~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~ 241 (303)
.+.++|+||||+...+...|......++++|||++|++++.+|+.+|... ..+.++.
T Consensus 87 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~-----------------------~~~~~~~ 143 (196)
T 2c95_A 87 TSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGET-----------------------SGRVDDN 143 (196)
T ss_dssp TCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTS-----------------------SSCGGGS
T ss_pred cCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCc-----------------------CCCCCCC
Confidence 57889999999999888777765567999999999999999999887421 0122345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHHHH
Q 022042 242 EEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNLL 291 (303)
Q Consensus 242 ~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~~l 291 (303)
.+.+.+|+..++....++.+.|.. .++.||++.++++++++|.+.+.+.+
T Consensus 144 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~~ 195 (196)
T 2c95_A 144 EETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDALL 195 (196)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHHHhc
Confidence 677888999988888887777753 56789999999999999999987653
No 15
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.94 E-value=1.1e-25 Score=190.71 Aligned_cols=186 Identities=33% Similarity=0.604 Sum_probs=150.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHH-cCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA-AGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~-~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~ 160 (303)
.+|++|+|+|++||||||+|+.|++++|+.++++|++++.... .++..+..+++++..|...+++....++.+.+....
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~l 92 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNV 92 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhh
Confidence 3567999999999999999999999999999999999988654 577888899988888888887776666655554322
Q ss_pred CCC-CcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042 161 SQE-NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD 239 (303)
Q Consensus 161 ~~~-~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~ 239 (303)
..+ .+||+||+|++..+...+......+|++|||++|++++.+|+.+|.. ...+.+
T Consensus 93 ~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~-----------------------~~~~~~ 149 (203)
T 1ukz_A 93 KANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGK-----------------------TSGRSD 149 (203)
T ss_dssp HTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHH-----------------------HHCCTT
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccc-----------------------cCCCCC
Confidence 223 57999999999988887777666689999999999999999988731 112335
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhh--cceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042 240 DTEEKVKLRLKTHHHNVEAVLSLYE--DVTVEVNGSVNKEDVFAQIDVALTNL 290 (303)
Q Consensus 240 d~~e~~~~r~~~~~~~~~~~~~~~~--~~~~~Id~~~s~eev~~~I~~~l~~~ 290 (303)
+..+.+.+|+..|.+...++.++|. +.++.||++.++++++++|.+.+.+.
T Consensus 150 ~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~~ 202 (203)
T 1ukz_A 150 DNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRDS 202 (203)
T ss_dssp CSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence 5678888999998888778777664 46677999999999999999988753
No 16
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.94 E-value=9.6e-26 Score=190.91 Aligned_cols=179 Identities=36% Similarity=0.634 Sum_probs=150.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~ 161 (303)
.++++|+|+|+|||||||+|+.|++++|+.++++|+++++....++..+..+.+++..|..++++.....+.+.+....
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~- 96 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPD- 96 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGG-
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhccc-
Confidence 4567999999999999999999999999999999999999888888899999999999988888888888877776543
Q ss_pred CCCcEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccC
Q 022042 162 QENGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKR 237 (303)
Q Consensus 162 ~~~~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r 237 (303)
.+++||+||+|.+..+...+.. .+..|+++|||++|++++.+|+.+|. +
T Consensus 97 ~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~---------------------------r 149 (201)
T 2cdn_A 97 AANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG---------------------------R 149 (201)
T ss_dssp GTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC---------------------------C
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC---------------------------C
Confidence 3578999999999877765443 45568999999999999999998873 1
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHH
Q 022042 238 FDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALT 288 (303)
Q Consensus 238 ~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~ 288 (303)
.++..+.+.+|+..|.....++.++|...+++||++.++++++++|.+.+.
T Consensus 150 ~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 150 ADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVDAVGTMDEVFARALRALG 200 (201)
T ss_dssp TTCSHHHHHHHHHHHHHHTTTHHHHTTTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHhhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 234577888899988888777788887788899999999999999987763
No 17
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.94 E-value=4.6e-25 Score=184.62 Aligned_cols=182 Identities=27% Similarity=0.558 Sum_probs=151.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~ 162 (303)
.+++|+|+|+|||||||+|+.|++++|+.+++.|+++++....+++.+..+.+++..+...+++.....+...+... .
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~--~ 82 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN--Q 82 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS--T
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc--C
Confidence 45799999999999999999999999999999999999887788899999999999998888887777777777654 3
Q ss_pred CCcEEEcCCCCCHHHHHHHHHh---CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042 163 ENGWLLDGYPRSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD 239 (303)
Q Consensus 163 ~~~~Vldg~p~~~~~~~~l~~~---~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~ 239 (303)
+.++|+||+|....+...|... +..+|++|||++|++++.+|+.+|.. ...+.+
T Consensus 83 ~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~-----------------------~~~r~~ 139 (194)
T 1qf9_A 83 GKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE-----------------------SSGRSD 139 (194)
T ss_dssp TCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT-----------------------TSCCTT
T ss_pred CCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccc-----------------------cCCCCC
Confidence 6789999999998877766542 23689999999999999999988741 012345
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhh--cceEEEcCCCCHHHHHHHHHHHHHH
Q 022042 240 DTEEKVKLRLKTHHHNVEAVLSLYE--DVTVEVNGSVNKEDVFAQIDVALTN 289 (303)
Q Consensus 240 d~~e~~~~r~~~~~~~~~~~~~~~~--~~~~~Id~~~s~eev~~~I~~~l~~ 289 (303)
+..+.+.+|+..|.+...++.+.|. +.+++||++.++++++++|.+.+.+
T Consensus 140 ~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 140 DNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191 (194)
T ss_dssp CSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 6678889999999888888777764 3567899999999999999988864
No 18
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.94 E-value=8.8e-26 Score=190.22 Aligned_cols=185 Identities=35% Similarity=0.588 Sum_probs=151.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~ 162 (303)
.+++|+|+|+|||||||+|+.|++++|+.+++.|++++.....+++.+..+.+++..|..++++.....+.+.+......
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~ 90 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGD 90 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccccc
Confidence 45799999999999999999999999999999999999887778888999999998888888887777776666554334
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcH
Q 022042 163 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTE 242 (303)
Q Consensus 163 ~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~ 242 (303)
+.++|+||+|....+...|......||++|||++|++++.+|+.+|.... .+.++..
T Consensus 91 ~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~-----------------------~~~~~~~ 147 (199)
T 2bwj_A 91 TRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSS-----------------------LPVDDTT 147 (199)
T ss_dssp CSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCC-----------------------SCHHHHH
T ss_pred CccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCC-----------------------CCCCCCH
Confidence 67899999999988877776644468999999999999999999885210 1112345
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042 243 EKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNL 290 (303)
Q Consensus 243 e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~~ 290 (303)
+.+.+|+..|+....++.+.|.. .+++||++.++++++++|.+.+.++
T Consensus 148 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~~ 197 (199)
T 2bwj_A 148 KTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDSI 197 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 77888888888888877776643 4578999999999999999988764
No 19
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.93 E-value=2e-24 Score=180.21 Aligned_cols=176 Identities=36% Similarity=0.653 Sum_probs=144.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~ 162 (303)
++++|+|+|+|||||||+++.|++++|+.+++.|++++..+..+++.+..+.+++..+...+++.....+...+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~----- 77 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA----- 77 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC-----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc-----
Confidence 467999999999999999999999999999999999998877888889999999999988888887777766653
Q ss_pred CCcEEEcCCCCCHHHHHHHH----HhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCC
Q 022042 163 ENGWLLDGYPRSLSQATALK----KYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF 238 (303)
Q Consensus 163 ~~~~Vldg~p~~~~~~~~l~----~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~ 238 (303)
.++|+||+++...+...+. ..+..||.+|||++|++++.+|+.+|.. ...|.
T Consensus 78 -~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~-----------------------~~~r~ 133 (186)
T 3cm0_A 78 -ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAE-----------------------LEGRS 133 (186)
T ss_dssp -SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHH-----------------------HHTCS
T ss_pred -CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccc-----------------------cCCCC
Confidence 2499999999887665433 3344589999999999999999987730 01234
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHH
Q 022042 239 DDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL 287 (303)
Q Consensus 239 ~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l 287 (303)
++..+.+.+|+..|.....++.+.|.. .+++||++.++++++++|.+.+
T Consensus 134 ~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l 184 (186)
T 3cm0_A 134 DDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAAL 184 (186)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHh
Confidence 556788888999888887787777764 3788999999999999998776
No 20
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.93 E-value=3.2e-24 Score=179.77 Aligned_cols=184 Identities=29% Similarity=0.589 Sum_probs=145.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHc-CCcchHHHHHHHHcCCCcChHHHHHHHHHHHcC---
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA-GSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQ--- 158 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~-~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~--- 158 (303)
++++|+|+|+|||||||+|+.|++++|+.+++.|++++..... ++..+..+++++..|...+++....++...+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 81 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA 81 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence 4689999999999999999999999999999999999887654 566788888888888888877655555443322
Q ss_pred CCCCCCcEEEcCCCCCHHHHHHHHHh---CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhc
Q 022042 159 PDSQENGWLLDGYPRSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLT 235 (303)
Q Consensus 159 ~~~~~~~~Vldg~p~~~~~~~~l~~~---~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~ 235 (303)
....+.+||+||+|....+...|... ...+|++|||++|++++++|+.+|.. ..
T Consensus 82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~-----------------------~~ 138 (196)
T 1tev_A 82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK-----------------------SS 138 (196)
T ss_dssp HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH-----------------------TS
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc-----------------------cC
Confidence 11235789999999998876655442 23578999999999999999988731 12
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHH
Q 022042 236 KRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN 289 (303)
Q Consensus 236 ~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~ 289 (303)
.|.++..+.+.+++..|.....++.++|.. .+++||++.++++++++|.+.+.+
T Consensus 139 ~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 139 GRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK 194 (196)
T ss_dssp SCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 345566788889999999999988877754 466899999999999999988864
No 21
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.90 E-value=2.1e-22 Score=175.84 Aligned_cols=206 Identities=34% Similarity=0.655 Sum_probs=165.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~ 162 (303)
+|.+|+|+|++||||||+++.|+++||+..++.+++++.....+...+..+..++..+...++..+.+.+...+... .
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~--~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR--R 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC--T
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--C
Confidence 46799999999999999999999999999999999988765555566777777777787788777777776655443 2
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH----hhhccCC
Q 022042 163 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTKRF 238 (303)
Q Consensus 163 ~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~----~rL~~r~ 238 (303)
+.+|++||+|+...++..+... ..++++|||+++++++.+|+..|..+..+|+.+.+.+.+|..-.++ +++..+.
T Consensus 104 ~~~~il~g~~~~~~~~~~l~~~-~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld 182 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALDKI-CEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQE 182 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHHTT-CCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCG
T ss_pred CCeEEEECCCCCHHHHHHHHhh-cCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCC
Confidence 5679999999887666555432 3578999999999999999999888888888766656677655555 6666666
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhc--ceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042 239 DDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNLLE 292 (303)
Q Consensus 239 ~d~~e~~~~r~~~~~~~~~~~~~~~~~--~~~~Id~~~s~eev~~~I~~~l~~~l~ 292 (303)
.+..+.+.+++..|.+...++.++|.. .++.||++.+ ++|+++|.+++.+.+.
T Consensus 183 ~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~~~~ 237 (246)
T 2bbw_A 183 DDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNKIT 237 (246)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHTTSC
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHhhCC
Confidence 667888999999998888888888865 5889999988 9999999998877554
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.85 E-value=1.7e-19 Score=147.93 Aligned_cols=173 Identities=19% Similarity=0.212 Sum_probs=121.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcC----CcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAG----SENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~----~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~ 160 (303)
++|+|+|+|||||||+|+.| +++|+.++++++++++..... .........+.... ++..+...+...+..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~-- 75 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIY---GDGVVARLCVEELGT-- 75 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHH---CTTHHHHHHHHHHCS--
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhC---CHHHHHHHHHHHHHh--
Confidence 58999999999999999999 999999999999999876542 22233333333321 234455566666643
Q ss_pred CCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042 161 SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD 240 (303)
Q Consensus 161 ~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d 240 (303)
..+..+|+||+ ....+...+.+....++++|||++|++++.+|+..|... ....
T Consensus 76 ~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~-------------------------~~~~ 129 (179)
T 3lw7_A 76 SNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRS-------------------------DDSK 129 (179)
T ss_dssp CCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC-----------------------------CC
T ss_pred cCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCC-------------------------CCcc
Confidence 23678999999 888888888877667889999999999999999988521 0013
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHH
Q 022042 241 TEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLL 291 (303)
Q Consensus 241 ~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l 291 (303)
..+.+.+|+..... .+...++....++||++.+++++.++|.+.+.+++
T Consensus 130 ~~~~~~~r~~~~~~--~~~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~~l 178 (179)
T 3lw7_A 130 EISELIRRDREELK--LGIGEVIAMADYIITNDSNYEEFKRRCEEVTDRVL 178 (179)
T ss_dssp CHHHHHHHHHHHHH--HTHHHHHHTCSEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHhhhc--cChHhHHHhCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence 35555555533211 11222333345678888899999999999998764
No 23
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.79 E-value=2.6e-18 Score=145.88 Aligned_cols=173 Identities=21% Similarity=0.249 Sum_probs=109.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh--CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHH------------H
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY--GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVV------------T 150 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l--g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~------------~ 150 (303)
++|+|+|++||||||+++.|+++| |+.++-+. .+.+++.+..+++++..+..++..... .
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~------eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~ 76 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVL 76 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE------SSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee------CCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999998 45444221 123566777787777776655543321 1
Q ss_pred HHHHHHcCCCCCCCcEEEcCCC----------C--CHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 022042 151 MVKERLSQPDSQENGWLLDGYP----------R--SLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTG 215 (303)
Q Consensus 151 ~l~~~l~~~~~~~~~~Vldg~p----------~--~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g 215 (303)
.+...+. .+..+|.|.|. + ..++...+.. .+..||++|||++|++++.+|+.+|+...
T Consensus 77 ~i~p~l~----~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~--- 149 (205)
T 4hlc_A 77 KVIPALK----EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQ--- 149 (205)
T ss_dssp THHHHHH----TTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC--------
T ss_pred HHHHHHH----cCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcc---
Confidence 1222222 25556667532 1 2333333333 45789999999999999999999885210
Q ss_pred ceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 022042 216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQ 293 (303)
Q Consensus 216 ~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~ 293 (303)
+ |.+...... ++..++.+..+.+.+.+.+++||+++++++|.++|.+.|.+.+++
T Consensus 150 ----------------d----r~e~~~~~f---~~~v~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~~L~~ 204 (205)
T 4hlc_A 150 ----------------N----RLDQEDLKF---HEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEK 204 (205)
T ss_dssp ----------------------CCHHHHHH---HHHHHHHHHHHHHSCCTTEEEEETTSCHHHHHHHHHHHHHHHHC-
T ss_pred ----------------c----chhccCHHH---HHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence 1 111111111 222233344455566667899999999999999999999988753
No 24
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.78 E-value=5.9e-18 Score=146.16 Aligned_cols=179 Identities=20% Similarity=0.227 Sum_probs=114.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC--CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHH-HHHHHc-
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYG--LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTM-VKERLS- 157 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg--~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~-l~~~l~- 157 (303)
.++++|+|+|++||||||+++.|++.++ +.++... ...+++.+..+++++..+....+....-+ ..++..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~------~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~ 97 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREH 97 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEC------TTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeec------CCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999996 4444331 23456677888888777654333322111 112221
Q ss_pred --CC----CCCCCcEEEc----------CCCCCHHHH--H---HHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 022042 158 --QP----DSQENGWLLD----------GYPRSLSQA--T---ALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGK 216 (303)
Q Consensus 158 --~~----~~~~~~~Vld----------g~p~~~~~~--~---~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~ 216 (303)
+. ...+..+|+| |+++...+. . .+...+..||++|||++|++++.+|+.+|...
T Consensus 98 ~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~----- 172 (229)
T 4eaq_A 98 LVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRD----- 172 (229)
T ss_dssp CCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCC-----
Confidence 11 0135678889 887654322 2 23345668999999999999999999988411
Q ss_pred eecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042 217 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE 292 (303)
Q Consensus 217 ~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~ 292 (303)
..+.++....+.+|+..++. .+.+.|...+++||+++++++|.++|.+.|.+++.
T Consensus 173 ------------------~dr~e~~~~~~~~rv~~~y~---~l~~~~~~~~~vIDa~~s~eev~~~I~~~l~~~l~ 227 (229)
T 4eaq_A 173 ------------------QNRLDQEDLKFHEKVIEGYQ---EIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLE 227 (229)
T ss_dssp --------------------CCCHHHHHHHHHHHHHHH---HHTTTCTTTEEEEETTSCHHHHHHHHHHHHHHHHT
T ss_pred ------------------ccchhhhhHHHHHHHHHHHH---HHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence 01222223344444444332 33445555788999999999999999999998774
No 25
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.78 E-value=1e-17 Score=139.93 Aligned_cols=162 Identities=24% Similarity=0.375 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHH-----------HH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIV-----------VT 150 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~-----------~~ 150 (303)
|+|+|+|++||||||+++.|++++ |+.++++++ ..++..+..+.+++..|...++... ..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 74 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE 74 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999998 999998762 1233455666666666644433211 11
Q ss_pred HHHHHHcCCCCCCCcEEEc----------CCCCCH--HHHHHH---HHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 022042 151 MVKERLSQPDSQENGWLLD----------GYPRSL--SQATAL---KKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTG 215 (303)
Q Consensus 151 ~l~~~l~~~~~~~~~~Vld----------g~p~~~--~~~~~l---~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g 215 (303)
.+...+.. +..+|+| |+++.. .+...+ ...+..||++|||++|++++.+|+.+|.
T Consensus 75 ~i~~~l~~----~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~------ 144 (195)
T 2pbr_A 75 KIIPDLKR----DKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKN------ 144 (195)
T ss_dssp THHHHHHT----TCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTT------
T ss_pred HHHHHHhC----CCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccC------
Confidence 12222322 4567777 555532 233322 2334479999999999999999998652
Q ss_pred ceecccCCCCCchHHHhhhccCCCCcHHHHHHHHH-HHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042 216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLK-THHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL 290 (303)
Q Consensus 216 ~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~-~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~ 290 (303)
+.+ ..+ +.+++. .|.. ....| +.+++||++.+++++.++|.+.+.++
T Consensus 145 ---------------------~~~-~~~-~~~~~~~~~~~----~~~~~-~~~~~Id~~~~~~~~~~~i~~~l~~~ 192 (195)
T 2pbr_A 145 ---------------------RFE-NKE-FLEKVRKGFLE----LAKEE-ENVVVIDASGEEEEVFKEILRALSGV 192 (195)
T ss_dssp ---------------------CCC-CHH-HHHHHHHHHHH----HHHHS-TTEEEEETTSCHHHHHHHHHHHHHTT
T ss_pred ---------------------ccc-hHH-HHHHHHHHHHH----HHhhC-CCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 111 233 333332 2322 22334 56688999999999999999888654
No 26
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.77 E-value=1e-17 Score=140.40 Aligned_cols=169 Identities=21% Similarity=0.306 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHH-------HHHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIV-------VTMVKE 154 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~-------~~~l~~ 154 (303)
|+|+|+|++||||||+++.|++++ |+.++..++ ..+++.+..+++++..+...+.... ...+..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 74 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999 998886532 2344566677777765544433221 112233
Q ss_pred HHcCCCCCCCcEEEcC----------CCCC--HHHHH---HHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceec
Q 022042 155 RLSQPDSQENGWLLDG----------YPRS--LSQAT---ALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYH 219 (303)
Q Consensus 155 ~l~~~~~~~~~~Vldg----------~p~~--~~~~~---~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~ 219 (303)
+......+..+|+|. +++. ..... .+......||++|||++|++++.+|+.+|.
T Consensus 75 -i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~---------- 143 (197)
T 2z0h_A 75 -IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN---------- 143 (197)
T ss_dssp -HTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C----------
T ss_pred -HHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccC----------
Confidence 444444456677784 3332 22222 223344579999999999999999998872
Q ss_pred ccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042 220 VKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE 292 (303)
Q Consensus 220 ~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~ 292 (303)
+.+. . .+.+++... +..+...+...+++||++.+++++.++|.+.+.+++.
T Consensus 144 -----------------~~~~-~-~~~~~~~~~---~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l~ 194 (197)
T 2z0h_A 144 -----------------RFEK-R-EFLERVREG---YLVLAREHPERIVVLDGKRSIEEIHRDVVREVKRRWK 194 (197)
T ss_dssp -----------------CCCC-H-HHHHHHHHH---HHHHHHHCTTTEEEEETTSCHHHHHHHHHHHTTCC--
T ss_pred -----------------cccH-H-HHHHHHHHH---HHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence 1112 2 233333222 2223444555678899999999999999999876654
No 27
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=1.1e-17 Score=141.12 Aligned_cols=169 Identities=15% Similarity=0.188 Sum_probs=107.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPD 160 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~ 160 (303)
.++.+|+|+|++||||||+++.|++.+|+.+++.|+++.... + ..+.+++.. +..........++.. +.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~--g----~~i~~~~~~~~~~~~~~~e~~~l~~-l~--- 92 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERF--H----KTVGELFTERGEAGFRELERNMLHE-VA--- 92 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--T----SCHHHHHHHHHHHHHHHHHHHHHHH-HT---
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh--C----CcHHHHHHhcChHHHHHHHHHHHHH-Hh---
Confidence 356799999999999999999999999999999999887642 2 222222222 110111111122222 22
Q ss_pred CCCCcEEEc---CCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHh-cCCCCCCCCceecccCCCCCchHHHhhhcc
Q 022042 161 SQENGWLLD---GYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVV-GRRLDPVTGKIYHVKYSPPETDEIAARLTK 236 (303)
Q Consensus 161 ~~~~~~Vld---g~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~-~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~ 236 (303)
....+|++ |.+........+.. ++.+|||++|.+++.+|+. .|...+ +.
T Consensus 93 -~~~~~vi~~ggg~~~~~~~~~~l~~----~~~vi~L~~~~e~l~~Rl~~~~~~Rp---------------------~~- 145 (199)
T 3vaa_A 93 -EFENVVISTGGGAPCFYDNMEFMNR----TGKTVFLNVHPDVLFRRLRIAKQQRP---------------------IL- 145 (199)
T ss_dssp -TCSSEEEECCTTGGGSTTHHHHHHH----HSEEEEEECCHHHHHHHHHHTGGGCG---------------------GG-
T ss_pred -hcCCcEEECCCcEEccHHHHHHHHc----CCEEEEEECCHHHHHHHHhcCCCCCC---------------------Cc-
Confidence 14567777 34444444444543 6799999999999999998 443111 11
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCC-CHHHHHHHHHHHHHHHH
Q 022042 237 RFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSV-NKEDVFAQIDVALTNLL 291 (303)
Q Consensus 237 r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~-s~eev~~~I~~~l~~~l 291 (303)
.++..+.+..++..++....+++. ...++||++. ++++++++|.+.+.+++
T Consensus 146 -~~~~~~~~~~~i~~~~~~r~~~y~---~ad~~Idt~~~s~ee~~~~I~~~l~~~l 197 (199)
T 3vaa_A 146 -QGKEDDELMDFIIQALEKRAPFYT---QAQYIFNADELEDRWQIESSVQRLQELL 197 (199)
T ss_dssp -TTCCHHHHHHHHHHHHHHHHHHHT---TSSEEEECCCCSSHHHHHHHHHHHHHHT
T ss_pred -CCCChhhHHHHHHHHHHHHHHHHh---hCCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 123345566666666665555443 3456788775 99999999999998875
No 28
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.76 E-value=3e-17 Score=140.05 Aligned_cols=178 Identities=17% Similarity=0.230 Sum_probs=113.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC---CceeehHHHHHHHHHcCCcchHHHHHHHHcCC--CcChHHHH-HH----
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ--LVPDEIVV-TM---- 151 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg---~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~--~~~~~~~~-~~---- 151 (303)
+++++|+|+|++||||||+++.|+++++ +.++.+. + ..+++.|+.+++++..+. .+.+.... -.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~----~--p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R 77 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR----E--PGGTPLAERIRELLLAPSDEPMAADTELLLMFAAR 77 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE----S--SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc----C--CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999884 4444331 1 246677888888887763 23332211 01
Q ss_pred ---HHHHHcCCCCCCCcEEEcCCC------------CCHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCCCCC
Q 022042 152 ---VKERLSQPDSQENGWLLDGYP------------RSLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPV 213 (303)
Q Consensus 152 ---l~~~l~~~~~~~~~~Vldg~p------------~~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~ 213 (303)
+.+.+......+..+|.|.|. ....+...+.. ....||++|||++|++++.+|+.+|...
T Consensus 78 ~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~-- 155 (213)
T 4edh_A 78 AQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRL-- 155 (213)
T ss_dssp HHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSC--
T ss_pred HHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCc--
Confidence 111111111225667778531 12344444433 3578999999999999999999988410
Q ss_pred CCceecccCCCCCchHHHhhhccCCCC-cHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042 214 TGKIYHVKYSPPETDEIAARLTKRFDD-TEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE 292 (303)
Q Consensus 214 ~g~~~~~~~~~p~~~~i~~rL~~r~~d-~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~ 292 (303)
+ +.+. ..+..++..+.| ..+.+.|...+++||+++++++|.++|.+.|.+++.
T Consensus 156 ------------------d----r~E~~~~~~~~rv~~~y----~~l~~~~~~~~~vIDa~~s~eeV~~~I~~~l~~~l~ 209 (213)
T 4edh_A 156 ------------------D----RFEQEDRRFFEAVRQTY----LQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLE 209 (213)
T ss_dssp ------------------C----TTTTSCHHHHHHHHHHH----HHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred ------------------C----cccccHHHHHHHHHHHH----HHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 0 1111 123332222233 334455666789999999999999999999998885
Q ss_pred h
Q 022042 293 Q 293 (303)
Q Consensus 293 ~ 293 (303)
+
T Consensus 210 ~ 210 (213)
T 4edh_A 210 R 210 (213)
T ss_dssp H
T ss_pred h
Confidence 4
No 29
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.75 E-value=3.1e-17 Score=136.73 Aligned_cols=168 Identities=15% Similarity=0.178 Sum_probs=98.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHHHHHHH-cCCcchHHHHHHHHcCCCcCh--HHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAEIA-AGSENGKRAKEHMEKGQLVPD--EIVVTMVKER 155 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~~~~~~-~~~~~~~~i~~~~~~g~~~~~--~~~~~~l~~~ 155 (303)
|++|+|+|+|||||||+++.|+++++ +.+++.++++.+.+. .....+. ..+ +...+. ..+...+..+
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~ 75 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR---DEM--RKLSVEKQKKLQIDAAKG 75 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH---HHH--TTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch---hhh--hcCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999997 788998998877652 2111110 000 111122 1222222222
Q ss_pred HcCCC--CCCCcEEEcCCCCCHHH--------HHHHHHhCCCCcEEEEEEcCHHHHHHH-Hhc--CCCCCCCCceecccC
Q 022042 156 LSQPD--SQENGWLLDGYPRSLSQ--------ATALKKYGFQPDLFILLEVPEDTLVER-VVG--RRLDPVTGKIYHVKY 222 (303)
Q Consensus 156 l~~~~--~~~~~~Vldg~p~~~~~--------~~~l~~~~~~pd~vI~L~~~~e~~~~R-l~~--R~~~~~~g~~~~~~~ 222 (303)
+.... ..+..+|+|+++....+ ...+... .|+++|||++|++++++| +.+ |...
T Consensus 76 i~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~l~~~~~~~~~rr~~~~~R~~~----------- 142 (194)
T 1nks_A 76 IAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI--NPSVIFLLEADPKIILSRQKRDTTRNRN----------- 142 (194)
T ss_dssp HHHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHH--CCSEEEEEECCHHHHHHHHHHCTTTCCC-----------
T ss_pred HHHHhhccCCCEEEECCchhhccccccccCCCHHHHHhc--CCCEEEEEeCCHHHHHHHHHhhcccCCC-----------
Confidence 22211 23677999987432211 1223332 489999999999998866 666 5310
Q ss_pred CCCCchHHHhhhccCCCCcHHHH--HHHHHHHHHHHHHHHHHh-hcceEEE-cCCCCHHHHHHHHHHHH
Q 022042 223 SPPETDEIAARLTKRFDDTEEKV--KLRLKTHHHNVEAVLSLY-EDVTVEV-NGSVNKEDVFAQIDVAL 287 (303)
Q Consensus 223 ~~p~~~~i~~rL~~r~~d~~e~~--~~r~~~~~~~~~~~~~~~-~~~~~~I-d~~~s~eev~~~I~~~l 287 (303)
.....+.+ .+++.. .+......| ...+++| |++.++++++++|.+.|
T Consensus 143 ---------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~I~d~~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 143 ---------------DYSDESVILETINFAR---YAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM 193 (194)
T ss_dssp ---------------CCCSHHHHHHHHHHHH---HHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred ---------------CccCHHHHHHHHHHHH---HHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 01112221 122222 222333344 3456788 99999999999998765
No 30
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.74 E-value=4.6e-18 Score=146.28 Aligned_cols=175 Identities=19% Similarity=0.243 Sum_probs=107.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh-------CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY-------GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKE 154 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l-------g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~ 154 (303)
+++++|+|+|++||||||+++.|++++ |+.++.+ ++ ..+++.|+.+++++.++...+.....-...+
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~llf~a~ 96 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----RE--PGGTRLGETLREILLNQPMDLETEALLMFAG 96 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ES--SSSSHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee----cC--CCCChHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 467899999999999999999999988 4433322 11 2466778888888887754333321111111
Q ss_pred H-------HcCCCCCCCcEEEcCCC------------CCHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCCCC
Q 022042 155 R-------LSQPDSQENGWLLDGYP------------RSLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDP 212 (303)
Q Consensus 155 ~-------l~~~~~~~~~~Vldg~p------------~~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~ 212 (303)
+ +......+..+|.|.|. ...++...+.. .+..||++|||++|++++.+|+.+|..
T Consensus 97 R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~-- 174 (227)
T 3v9p_A 97 RREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRM-- 174 (227)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCC--
T ss_pred HHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccC--
Confidence 1 11111225667788642 12344433333 357899999999999999999988841
Q ss_pred CCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHH
Q 022042 213 VTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTN 289 (303)
Q Consensus 213 ~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~ 289 (303)
. + +.+.......++. ++.+..+.+.|...+++||+++++++|.++|.+.|.+
T Consensus 175 ---~---------------d----r~E~~~~ef~~rv---~~~Y~~la~~~~~~~~vIDa~~s~eeV~~~I~~~l~~ 226 (227)
T 3v9p_A 175 ---P---------------D----KFESESDAFFART---RAEYLRRAQEAPHRFVIVDSSEPIAQIRKQLEGVLAA 226 (227)
T ss_dssp ---C----------------------CCHHHHHHHHH---HHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred ---c---------------c----chhhhhHHHHHHH---HHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 0 0 1111112222222 2333345556666789999999999999999998875
No 31
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.73 E-value=1.2e-17 Score=144.48 Aligned_cols=179 Identities=22% Similarity=0.227 Sum_probs=105.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcC---CCcChHHH---------
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKG---QLVPDEIV--------- 148 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g---~~~~~~~~--------- 148 (303)
.+++++|+|+|++||||||+++.|++.++...++...+.++ ..+++.|+.+++++..+ ..+.....
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~ 101 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARV 101 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHH
Confidence 34568999999999999999999999884322221111121 24677888888887532 22332211
Q ss_pred ---HHHHHHHHcCCCCCCCcEEEcCC----------CC--CHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCC
Q 022042 149 ---VTMVKERLSQPDSQENGWLLDGY----------PR--SLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRL 210 (303)
Q Consensus 149 ---~~~l~~~l~~~~~~~~~~Vldg~----------p~--~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~ 210 (303)
...+...+. .+..+|.|.| .+ ...+...+.. ....||++|||++|++++++|+.+|..
T Consensus 102 ~~~~~~I~paL~----~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~ 177 (236)
T 3lv8_A 102 QLVENVIKPALA----RGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGE 177 (236)
T ss_dssp HHHHHTHHHHHH----TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----C
T ss_pred HHHHHHHHHHHH----cCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 111222222 2566777853 11 2333333332 357899999999999999999998841
Q ss_pred CCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042 211 DPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL 290 (303)
Q Consensus 211 ~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~ 290 (303)
. +++.. ...+. .+|+.. .+..+.+.+.. +++||+++++++|.++|.+.|.++
T Consensus 178 ~--------------------dr~E~---~~~~~-~~rv~~---~y~~la~~~~~-~~vIDa~~sieeV~~~I~~~l~~~ 229 (236)
T 3lv8_A 178 L--------------------DRIEK---MDISF-FERARE---RYLELANSDDS-VVMIDAAQSIEQVTADIRRALQDW 229 (236)
T ss_dssp C--------------------CTTTT---SCHHH-HHHHHH---HHHHHHHHCTT-EEEEETTSCHHHHHHHHHHHHHHH
T ss_pred c--------------------chhhh---hHHHH-HHHHHH---HHHHHHHHCCC-EEEEeCCCCHHHHHHHHHHHHHHH
Confidence 0 01110 11222 222322 22233444444 889999999999999999999998
Q ss_pred HHh
Q 022042 291 LEQ 293 (303)
Q Consensus 291 l~~ 293 (303)
+.+
T Consensus 230 l~~ 232 (236)
T 3lv8_A 230 LSQ 232 (236)
T ss_dssp HTT
T ss_pred HHh
Confidence 855
No 32
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.73 E-value=1.7e-17 Score=141.55 Aligned_cols=173 Identities=17% Similarity=0.224 Sum_probs=108.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---CC-ceeehHHHHHHHHHcCCcchHHHHHHHHcC-----CCcChHHH-----
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY---GL-VHIAAGDLLRAEIAAGSENGKRAKEHMEKG-----QLVPDEIV----- 148 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l---g~-~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g-----~~~~~~~~----- 148 (303)
++++|+|+|++||||||+++.|++++ |+ .++-+ ++ +.+++.|+.+++++... ..+.+...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~ 75 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT----RE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFY 75 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE----ES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee----eC--CCCCHHHHHHHHHHhcccccccccCChHHHHHHHH
Confidence 46799999999999999999999988 44 22211 11 34677888888887732 22332211
Q ss_pred -------HHHHHHHHcCCCCCCCcEEEcCCC------------CCHHHHHHHH---HhCCCCcEEEEEEcCHHHHHHHHh
Q 022042 149 -------VTMVKERLSQPDSQENGWLLDGYP------------RSLSQATALK---KYGFQPDLFILLEVPEDTLVERVV 206 (303)
Q Consensus 149 -------~~~l~~~l~~~~~~~~~~Vldg~p------------~~~~~~~~l~---~~~~~pd~vI~L~~~~e~~~~Rl~ 206 (303)
...+...+. .+..+|.|.|. ....+...+. ..+..||++|||++|++++++|+.
T Consensus 76 A~R~~~~~~~i~paL~----~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~ 151 (213)
T 4tmk_A 76 AARVQLVETVIKPALA----NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRAR 151 (213)
T ss_dssp HHHHHHHHHTHHHHHH----TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----CCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHH
Confidence 112222332 25667777531 1234443333 345789999999999999999999
Q ss_pred cCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHH
Q 022042 207 GRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVA 286 (303)
Q Consensus 207 ~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~ 286 (303)
+|... ++... ...+..++..+.|.. +.+.+ ..+++||+++++++|.++|.+.
T Consensus 152 ~R~~~--------------------dr~E~---~~~~f~~rv~~~y~~----la~~~-~~~~vIDa~~s~eeV~~~I~~~ 203 (213)
T 4tmk_A 152 ARGEL--------------------DRIEQ---ESFDFFNRTRARYLE----LAAQD-KSIHTIDATQPLEAVMDAIRTT 203 (213)
T ss_dssp HHSSC--------------------CTTTT---SCHHHHHHHHHHHHH----HHHTC-TTEEEEETTSCHHHHHHHHHHH
T ss_pred hcCCc--------------------cchhh---hHHHHHHHHHHHHHH----HHHHC-CcEEEECCCCCHHHHHHHHHHH
Confidence 88410 01110 123333332323332 23333 5688999999999999999999
Q ss_pred HHHHHHh
Q 022042 287 LTNLLEQ 293 (303)
Q Consensus 287 l~~~l~~ 293 (303)
|.+++.+
T Consensus 204 l~~~l~~ 210 (213)
T 4tmk_A 204 VTHWVKE 210 (213)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998854
No 33
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.73 E-value=6.3e-17 Score=136.58 Aligned_cols=161 Identities=23% Similarity=0.210 Sum_probs=106.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHH---HHHHHHHHHcCC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEI---VVTMVKERLSQP 159 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~---~~~~l~~~l~~~ 159 (303)
.|++|+|+|++||||||+++.|++.+|+.+++.|++...... .....+....+.. ....+...+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~----------~~~~~g~~~~~~~~~~~~~~l~~~~--- 83 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENI----------RKMSEGIPLTDDDRWPWLAAIGERL--- 83 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHH----------HHHHHTCCCCHHHHHHHHHHHHHHH---
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhH----------HHHhcCCCCCchhhHHHHHHHHHHH---
Confidence 356899999999999999999999999999999887532110 1122232222221 222333333
Q ss_pred CCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCC
Q 022042 160 DSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD 239 (303)
Q Consensus 160 ~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~ 239 (303)
..+..+|+|+..........+......++.+|||++|.+++.+|+.+|..+ .
T Consensus 84 -~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~---------------------------~ 135 (202)
T 3t61_A 84 -ASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGH---------------------------F 135 (202)
T ss_dssp -TSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSS---------------------------C
T ss_pred -hcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhcc---------------------------C
Confidence 236779999876677777777776656789999999999999999987421 0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042 240 DTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL 290 (303)
Q Consensus 240 d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~ 290 (303)
...+.+...+..+ .+. ......++||++.++++++++|.+.|.+.
T Consensus 136 ~~~~~~~~~~~~~----~~~--~~~~~~~~Id~~~~~~e~~~~I~~~l~~~ 180 (202)
T 3t61_A 136 MPSSLLQTQLETL----EDP--RGEVRTVAVDVAQPLAEIVREALAGLARL 180 (202)
T ss_dssp CCHHHHHHHHHHC----CCC--TTSTTEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhc----CCC--CCCCCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence 1122222222221 111 11224678999999999999999998754
No 34
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.71 E-value=3.9e-16 Score=127.74 Aligned_cols=152 Identities=12% Similarity=0.054 Sum_probs=97.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE 163 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~ 163 (303)
|++|+|+|++||||||+++.|++++|+.+++.|.+..... .+...+. . ...+.. +
T Consensus 1 M~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~--------~~~~~~~------------~-~~~l~~----~ 55 (173)
T 3kb2_A 1 MTLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS--------GNEKLFE------------H-FNKLAD----E 55 (173)
T ss_dssp -CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT--------CHHHHHH------------H-HHHHTT----C
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh--------HHHHHHH------------H-HHHHHh----C
Confidence 4589999999999999999999999999999987765421 0011111 0 111211 3
Q ss_pred CcEEEcCC---------------CCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCch
Q 022042 164 NGWLLDGY---------------PRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETD 228 (303)
Q Consensus 164 ~~~Vldg~---------------p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~ 228 (303)
..+|.|.+ .........+......|+++|||++|++++.+|+.+|..+
T Consensus 56 ~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~----------------- 118 (173)
T 3kb2_A 56 DNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDE----------------- 118 (173)
T ss_dssp CSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSCS-----------------
T ss_pred CCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCc-----------------
Confidence 34555521 1123344444444456899999999999999999887311
Q ss_pred HHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCC-CCHHHHHHHHHHHHHHHH
Q 022042 229 EIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGS-VNKEDVFAQIDVALTNLL 291 (303)
Q Consensus 229 ~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~-~s~eev~~~I~~~l~~~l 291 (303)
....+... ...+.+......|....++||++ .+++++.++|.+.++.+.
T Consensus 119 ----------~~~~~~~~----~~~~~~~~~~~~~~~~~~~id~~~~~~~ev~~~I~~~~~~~~ 168 (173)
T 3kb2_A 119 ----------YIEGKDID----SILELYREVMSNAGLHTYSWDTGQWSSDEIAKDIIFLVELEH 168 (173)
T ss_dssp ----------CCCHHHHH----HHHHHHHHHHHTCSSCEEEEETTTSCHHHHHHHHHHHHHHGG
T ss_pred ----------chhhhHHH----HHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHhCCC
Confidence 11122222 22233334455566677889998 599999999999988754
No 35
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.71 E-value=1.6e-16 Score=133.85 Aligned_cols=170 Identities=16% Similarity=0.175 Sum_probs=105.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHH-----------H
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVV-----------T 150 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l-g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~-----------~ 150 (303)
++++|+|+|++||||||+++.|+++| |+.+++.+... .++..+..+++++..+......... .
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~-----~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~ 77 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQ-----RSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFAS 77 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSC-----TTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCC-----CCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999998 67777653211 1233556666666554333332110 1
Q ss_pred HHHHHHcCCCCCCCcEEEcCCCCC-----------HHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceec
Q 022042 151 MVKERLSQPDSQENGWLLDGYPRS-----------LSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYH 219 (303)
Q Consensus 151 ~l~~~l~~~~~~~~~~Vldg~p~~-----------~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~ 219 (303)
.+...+. .+..+|+|+|+.. ......+......||++|||++|++++.+ +|..+
T Consensus 78 ~i~~~l~----~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~~d-------- 142 (204)
T 2v54_A 78 FIQEQLE----QGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR---NVGEE-------- 142 (204)
T ss_dssp HHHHHHH----TTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCSSS--------
T ss_pred HHHHHHH----CCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcCcc--------
Confidence 1122222 2566888987643 22222233233469999999999998877 44211
Q ss_pred ccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHhh
Q 022042 220 VKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQR 294 (303)
Q Consensus 220 ~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~~ 294 (303)
+ .+ .+.+.+|+..++.. ....+...+++||++.++++++++|.+.+.+.+...
T Consensus 143 -------------~----~e--~~~~~~rl~~~y~~---~~~~~~~~~~~Id~~~~~~~v~~~i~~~l~~~l~~~ 195 (204)
T 2v54_A 143 -------------I----YE--DVTFQQKVLQEYKK---MIEEGDIHWQIISSEFEEDVKKELIKNIVIEAIHTV 195 (204)
T ss_dssp -------------T----TC--CSHHHHHHHHHHHH---HHTTCSSCEEEECTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred -------------c----cc--HHHHHHHHHHHHHH---HHHhCCCcEEEEECCCCHHHHHHHHHHHHHHHHhhc
Confidence 0 01 01334444443222 122333466889999999999999999999887653
No 36
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.71 E-value=1.2e-18 Score=147.94 Aligned_cols=175 Identities=16% Similarity=0.156 Sum_probs=104.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHH------
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKE------ 154 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~------ 154 (303)
++++++|+|+|++||||||+++.|+++++..+++++ ++++. ..+++.+..+++++..+..+++.....++..
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~-~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK-HLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHM 84 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE-EEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999876666552 22210 1134455666666655544444322221110
Q ss_pred -HHcCCCCCCCcEEEcCCCCCH--HH-------HHHHH---HhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceeccc
Q 022042 155 -RLSQPDSQENGWLLDGYPRSL--SQ-------ATALK---KYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVK 221 (303)
Q Consensus 155 -~l~~~~~~~~~~Vldg~p~~~--~~-------~~~l~---~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~ 221 (303)
.+......+..+|+|+|+... .+ ..++. .....||++|||++|++++.+|+.+|.
T Consensus 85 ~~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~------------ 152 (212)
T 2wwf_A 85 NEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGE------------ 152 (212)
T ss_dssp HHHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTS------------
T ss_pred HHHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCc------------
Confidence 111111125678999986431 11 11221 112468999999999999999986542
Q ss_pred CCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042 222 YSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL 290 (303)
Q Consensus 222 ~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~ 290 (303)
+ +.++ +.+.+++...+..... ...+++||++.+++++.++|.+.+.++
T Consensus 153 ----------~----r~~~--~~~~~~~~~~~~~~~~-----~~~~~~Id~~~~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 153 ----------E----IYEK--VETQKKIYETYKHFAH-----EDYWINIDATRKIEDIHNDIVKEVTKI 200 (212)
T ss_dssp ----------S----TTCS--HHHHHHHHHHGGGGTT-----CTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred ----------c----cccH--HHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 0 1111 2334444333222111 234678999999999999999988765
No 37
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.70 E-value=6.2e-17 Score=134.80 Aligned_cols=117 Identities=15% Similarity=0.270 Sum_probs=70.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcC--hHHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP--DEIVVTMVKERL 156 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~--~~~~~~~l~~~l 156 (303)
+++|+|+|+|||||||+++.|++++| +.+++.++++++......... ...+. ..... ...+...+.+.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~i 78 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVS-DRDQM---RKMDPETQKRIQKMAGRKI 78 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCS-SGGGG---SSCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCC-CHHHH---hcCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999999998 999999999887654321100 00000 00000 111111222222
Q ss_pred cCCCCCCCcEEEcCCCCCHH--HH------HHHHHhCCCCcEEEEEEcCHHHHHH-HHhc
Q 022042 157 SQPDSQENGWLLDGYPRSLS--QA------TALKKYGFQPDLFILLEVPEDTLVE-RVVG 207 (303)
Q Consensus 157 ~~~~~~~~~~Vldg~p~~~~--~~------~~l~~~~~~pd~vI~L~~~~e~~~~-Rl~~ 207 (303)
.... .++.+|+||++.... .. ..+... .||++|||++|++++++ |+.+
T Consensus 79 ~~~~-~~~~viid~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~~~~~~~~rRl~~ 135 (192)
T 1kht_A 79 AEMA-KESPVAVDTHSTVSTPKGYLPGLPSWVLNEL--NPDLIIVVETTGDEILMRRMSD 135 (192)
T ss_dssp HHHH-TTSCEEEECCSEEEETTEEEESSCHHHHHHH--CCSEEEEEECCHHHHHHHHHTS
T ss_pred Hhhc-cCCeEEEccceeccccccccccCcHHHHhcc--CCCEEEEEeCCHHHHHHHHhhh
Confidence 2111 245799998653100 00 112222 37899999999999996 8877
No 38
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.70 E-value=3.9e-16 Score=131.63 Aligned_cols=165 Identities=22% Similarity=0.309 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHH----------HHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEI----------VVTM 151 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~----------~~~~ 151 (303)
|+|+|+|+.||||||+++.|+++| |..++-+. .+.+++.+..+++++......+... ....
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr------eP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~ 74 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR------EPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE------SSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE------CCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999988 56555321 1234555666666655543332221 1122
Q ss_pred HHHHHcCCCCCCCcEEEcCCC------------CCHHHHHH---HHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 022042 152 VKERLSQPDSQENGWLLDGYP------------RSLSQATA---LKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGK 216 (303)
Q Consensus 152 l~~~l~~~~~~~~~~Vldg~p------------~~~~~~~~---l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~ 216 (303)
+...+. .+..+|.|.|. ........ +...+..||++|||++|+++..+|..++.
T Consensus 75 I~~~L~----~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~d------- 143 (197)
T 3hjn_A 75 IKQYLS----EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN------- 143 (197)
T ss_dssp HHHHHT----TTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C-------
T ss_pred HHHHHH----CCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcC-------
Confidence 233332 25567777542 12233332 33346789999999999999999954431
Q ss_pred eecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHH
Q 022042 217 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLL 291 (303)
Q Consensus 217 ~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l 291 (303)
|.. ..+..+ ..++.+..+.+.+.+.+++||+++++++|.++|.+.|++.+
T Consensus 144 --------------------r~e-~~ef~~----rv~~~y~~la~~~~~~~~~IDa~~~~eeV~~~I~~~i~~rl 193 (197)
T 3hjn_A 144 --------------------RFE-KREFLE----RVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKRRW 193 (197)
T ss_dssp --------------------TTC-CHHHHH----HHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHSCC-
T ss_pred --------------------ccc-cHHHHH----HHHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 111 123222 22233344556677778999999999999999999987644
No 39
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.69 E-value=6.5e-16 Score=130.71 Aligned_cols=178 Identities=14% Similarity=0.168 Sum_probs=100.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCc--eeehHHHHHHHHHcCCcchHHHHHHHHcCCC---cChHHH---------
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLV--HIAAGDLLRAEIAAGSENGKRAKEHMEKGQL---VPDEIV--------- 148 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~--~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~---~~~~~~--------- 148 (303)
++++|+|+|+|||||||+++.|+++++.. ++..+ .+.+..+++++..+.. ......
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~----------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~ 72 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTE----------WNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFS 72 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEE----------TTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEec----------CCcHHHHHHHHhccccccCCCHHHHHHHHHHHHH
Confidence 56799999999999999999999999863 44311 0122223333322211 111100
Q ss_pred ---HHHHHHHHcCCCCCCCcEEEcCCCCCH-----------HHHHHHHHhCCCCcEEEEEEcCHHHHHHHHh-cCCCCCC
Q 022042 149 ---VTMVKERLSQPDSQENGWLLDGYPRSL-----------SQATALKKYGFQPDLFILLEVPEDTLVERVV-GRRLDPV 213 (303)
Q Consensus 149 ---~~~l~~~l~~~~~~~~~~Vldg~p~~~-----------~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~-~R~~~~~ 213 (303)
...+...+. .+..+|+|+|+... .....+......+|++|||++|++++.+|+. +|..
T Consensus 73 ~~~~~~i~~~l~----~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~--- 145 (213)
T 2plr_A 73 DRYERYILPMLK----SGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRK--- 145 (213)
T ss_dssp HHHHHTHHHHHH----TTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHh----CCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccc---
Confidence 011112222 25678999987542 1122233333458999999999999999998 7741
Q ss_pred CCceecccCCCCCchHHHhhhccCCC--CcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHH
Q 022042 214 TGKIYHVKYSPPETDEIAARLTKRFD--DTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLL 291 (303)
Q Consensus 214 ~g~~~~~~~~~p~~~~i~~rL~~r~~--d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l 291 (303)
.++ ++... .+..+.+ +..+.+.+|+..++... .+.+ .+++||++.++++++++|.+.+.+++
T Consensus 146 ~~~-~~~g~----------~~~~~~d~~e~~~~~~~r~~~~~~~~---~~~~--~~~~Id~~~~~e~v~~~I~~~l~~~~ 209 (213)
T 2plr_A 146 IKP-QEAGA----------DIFPGLSPEEGFLKYQGLITEVYDKL---VKDE--NFIVIDGTKTPKEIQIQIRKFVGELI 209 (213)
T ss_dssp CCT-TTTTT----------TTCTTSCHHHHHHHHHHHHHHHHHHH---TTTT--TCEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred ccc-ccccc----------ccccccchhhhHHHHHHHHHHHHHHH---HhhC--CEEEEECCCCHHHHHHHHHHHHHHHh
Confidence 011 00000 0000001 01123444444333222 1222 56889999999999999999998876
Q ss_pred Hh
Q 022042 292 EQ 293 (303)
Q Consensus 292 ~~ 293 (303)
..
T Consensus 210 ~~ 211 (213)
T 2plr_A 210 DN 211 (213)
T ss_dssp HT
T ss_pred hc
Confidence 53
No 40
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.69 E-value=1.5e-16 Score=135.09 Aligned_cols=176 Identities=23% Similarity=0.208 Sum_probs=99.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHH-----------H
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVV-----------T 150 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~-----------~ 150 (303)
+++++|+|+|++||||||+++.|+++++..+++++.+ ++. ..+++.+..+++++..+..+++.... .
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~-~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 84 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL-RFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVP 84 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE-ESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe-eCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999886444333211 000 00233455555566544333433211 1
Q ss_pred HHHHHHcCCCCCCCcEEEcCCC------------CCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCcee
Q 022042 151 MVKERLSQPDSQENGWLLDGYP------------RSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIY 218 (303)
Q Consensus 151 ~l~~~l~~~~~~~~~~Vldg~p------------~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~ 218 (303)
.+...+. .+..+|+|.+. ........+......||++|||++|++++.+|+.+|. +
T Consensus 85 ~i~~~l~----~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~-~------- 152 (215)
T 1nn5_A 85 LIKEKLS----QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGH-E------- 152 (215)
T ss_dssp HHHHHHH----TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC------C-------
T ss_pred HHHHHHH----CCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc-c-------
Confidence 1222222 25668888532 1122222222222468999999999999999986331 1
Q ss_pred cccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHhh
Q 022042 219 HVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQR 294 (303)
Q Consensus 219 ~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~~ 294 (303)
+.+. . ...+++...+. .+...+...+++||++.++++++++|.+.+.+++...
T Consensus 153 ------------------~~~~-~-~~~~~~~~~~~---~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l~~~ 205 (215)
T 1nn5_A 153 ------------------RYEN-G-AFQERALRCFH---QLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIATA 205 (215)
T ss_dssp ------------------TTCS-H-HHHHHHHHHHH---HHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHHHHHG
T ss_pred ------------------ccch-H-HHHHHHHHHHH---HHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHhhc
Confidence 1111 1 22233322211 1112223356789999999999999999999888753
No 41
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.69 E-value=4e-16 Score=129.60 Aligned_cols=167 Identities=14% Similarity=0.098 Sum_probs=98.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQ 162 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~~ 162 (303)
+++|+|+|++||||||+++.|++++|+.+++.|+++.+.. +... .+++.. |...........+......
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~--g~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~---- 74 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRT--GADI----AWIFEMEGEAGFRRREREMIEALCKL---- 74 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH--TSCH----HHHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc--CCCh----hhHHHHhCHHHHHHHHHHHHHHHHhc----
Confidence 5689999999999999999999999999999999987642 2222 222221 1111112222222222221
Q ss_pred CCcEEEcC--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHH--hcCCCCCCCCceecccCCCCCchHHHhhhccCC
Q 022042 163 ENGWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERV--VGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF 238 (303)
Q Consensus 163 ~~~~Vldg--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl--~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~ 238 (303)
...+|..| ..........+... .++|||++|++++.+|+ ..+.. |+
T Consensus 75 ~~~vi~~gg~~~~~~~~~~~l~~~----~~vi~L~~~~e~l~~Rl~~~~~~~--------------------------rp 124 (185)
T 3trf_A 75 DNIILATGGGVVLDEKNRQQISET----GVVIYLTASIDTQLKRIGQKGEMR--------------------------RP 124 (185)
T ss_dssp SSCEEECCTTGGGSHHHHHHHHHH----EEEEEEECCHHHHHHHHHCCTTCS--------------------------SC
T ss_pred CCcEEecCCceecCHHHHHHHHhC----CcEEEEECCHHHHHHHHhhcCCCC--------------------------CC
Confidence 23344444 33344444555543 38999999999999999 43321 11
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCC-CHHHHHHHHHHHHHHHHH
Q 022042 239 DDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSV-NKEDVFAQIDVALTNLLE 292 (303)
Q Consensus 239 ~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~-s~eev~~~I~~~l~~~l~ 292 (303)
....+....+++.......+++..+ ..++||++. ++++++++|.+.+...+.
T Consensus 125 ~~~~~~~~~~l~~~~~~r~~~y~~~--ad~~Idt~~~~~~e~~~~I~~~l~~~~~ 177 (185)
T 3trf_A 125 LFIKNNSKEKLQQLNEIRKPLYQAM--ADLVYPTDDLNPRQLATQILVDIKQTYS 177 (185)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHH--CSEEEECTTCCHHHHHHHHHHHSCC---
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhhc--CCEEEECCCCCHHHHHHHHHHHHHHHhh
Confidence 1112222334444444444444332 235677775 899999999998876654
No 42
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.69 E-value=1e-15 Score=129.63 Aligned_cols=172 Identities=15% Similarity=0.161 Sum_probs=115.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCC-----cCh-----------
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VPD----------- 145 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~-----~~~----------- 145 (303)
..|.-|+|+|.+||||||+++.|++ +|+++|++|.+.++....+.+....+.+.+..... +..
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~ 85 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDE 85 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCH
Confidence 4567899999999999999999988 99999999999999887776666666655533221 211
Q ss_pred -------HHHHHHH----HHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCC
Q 022042 146 -------EIVVTMV----KERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVT 214 (303)
Q Consensus 146 -------~~~~~~l----~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~ 214 (303)
.++...+ ...+... ....+|+|. |.-.+... +.. .+|.+|+++||++++++|+.+|.
T Consensus 86 ~~~~~L~~i~HP~I~~~~~~~~~~~--~~~~vv~d~-pLL~E~~~-~~~---~~D~vi~V~ap~e~r~~Rl~~Rd----- 153 (210)
T 4i1u_A 86 DARRRLEAITHPLIRAETEREARDA--QGPYVIFVV-PLLVESRN-WKA---RCDRVLVVDCPVDTQIARVMQRN----- 153 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC--CSSSEEEEC-TTCTTCHH-HHH---HCSEEEEEECCHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhc--CCCEEEEEE-ecccccCC-ccc---cCCeEEEEECCHHHHHHHHHhcC-----
Confidence 1122222 2333332 234567775 32222011 222 37899999999999999999884
Q ss_pred CceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCC-CCHHHHHHHHHHHHHHHHHh
Q 022042 215 GKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGS-VNKEDVFAQIDVALTNLLEQ 293 (303)
Q Consensus 215 g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~-~s~eev~~~I~~~l~~~l~~ 293 (303)
..+.+.+.+|+..+.... +.+...-++|+++ ++++++.++|.+.+.+++..
T Consensus 154 ------------------------g~s~eea~~ri~~Q~~~e----ek~~~AD~VIdN~~gsle~l~~qV~~l~~~~~~~ 205 (210)
T 4i1u_A 154 ------------------------GFTREQVEAIIARQATRE----ARLAAADDVIVNDAATPDALAVQVDALHQRYLAF 205 (210)
T ss_dssp ------------------------CCCHHHHHHHHHHSCCHH----HHHHTCSEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------CCCHHHHHHHHHHcCChH----HHHHhCCEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 123566666665543321 2222234678999 99999999999999988764
Q ss_pred h
Q 022042 294 R 294 (303)
Q Consensus 294 ~ 294 (303)
.
T Consensus 206 ~ 206 (210)
T 4i1u_A 206 A 206 (210)
T ss_dssp H
T ss_pred h
Confidence 3
No 43
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.68 E-value=2.2e-15 Score=123.49 Aligned_cols=162 Identities=12% Similarity=0.092 Sum_probs=97.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE 163 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~ 163 (303)
|++|+|+|++||||||+++.|++++|+.+++.|++++.. .+......+.. .+.......... +...+. .
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~--~g~~~~~~~~~---~~~~~~~~~~~~-~~~~l~-----~ 70 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT--SGMTVADVVAA---EGWPGFRRRESE-ALQAVA-----T 70 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH--HCSCHHHHHHH---HHHHHHHHHHHH-HHHHHC-----C
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH--hCCCHHHHHHH---cCHHHHHHHHHH-HHHHhh-----c
Confidence 358999999999999999999999999999999998764 22222221111 111011111111 122232 2
Q ss_pred CcEEEc-C--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHh--cCCCCCCCCceecccCCCCCchHHHhhhccCC
Q 022042 164 NGWLLD-G--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVV--GRRLDPVTGKIYHVKYSPPETDEIAARLTKRF 238 (303)
Q Consensus 164 ~~~Vld-g--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~--~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~ 238 (303)
..+|++ | ++........+.. ++++|||++|++++.+|+. +|..+ +.
T Consensus 71 ~~~vi~~g~~~~~~~~~~~~l~~----~~~~i~l~~~~e~~~~R~~~~~r~~~-------------------------r~ 121 (173)
T 1e6c_A 71 PNRVVATGGGMVLLEQNRQFMRA----HGTVVYLFAPAEELALRLQASLQAHQ-------------------------RP 121 (173)
T ss_dssp SSEEEECCTTGGGSHHHHHHHHH----HSEEEEEECCHHHHHHHHHHHHCSCC-------------------------CC
T ss_pred CCeEEECCCcEEeCHHHHHHHHc----CCeEEEEECCHHHHHHHHhhccCCCC-------------------------CC
Confidence 345554 4 2223333344442 5799999999999999998 77311 11
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCC-CCHHHHHHHHHHHHH
Q 022042 239 DDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGS-VNKEDVFAQIDVALT 288 (303)
Q Consensus 239 ~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~-~s~eev~~~I~~~l~ 288 (303)
....+...+++..++....+.... ..++||++ .+++++.++|.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Id~~~~~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 122 TLTGRPIAEEMEAVLREREALYQD---VAHYVVDATQPPAAIVCELMQTMR 169 (173)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHH---HCSEEEETTSCHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHh---CcEEEECCCCCHHHHHHHHHHHhc
Confidence 111233344555555444433222 23578888 899999999887763
No 44
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.68 E-value=2.5e-16 Score=131.41 Aligned_cols=121 Identities=16% Similarity=0.168 Sum_probs=76.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~ 161 (303)
..+++|+|+|+|||||||+++.|++++|+.+++.|.+...........+......+... ....+...+...+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~---- 75 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGAT---AIMMLYHTAATILQ---- 75 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHHH---HHHHHHHHHHHHHH----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhHH---HHHHHHHHHHHHHh----
Confidence 35679999999999999999999999999999998876543321000011000000000 00111122222232
Q ss_pred CCCcEEEcCCCCCHHH---HHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 162 QENGWLLDGYPRSLSQ---ATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 162 ~~~~~Vldg~p~~~~~---~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
.+.++|+|++...... ...+...+..++++|||++|++++.+|+.+|.
T Consensus 76 ~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~ 126 (193)
T 2rhm_A 76 SGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRI 126 (193)
T ss_dssp TTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred CCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhc
Confidence 2678999997632222 22244455678899999999999999998874
No 45
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.68 E-value=5.5e-16 Score=131.13 Aligned_cols=167 Identities=16% Similarity=0.171 Sum_probs=96.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCC-----cC--------------
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VP-------------- 144 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~-----~~-------------- 144 (303)
|++|+|+|++||||||+++.|++ +|+.+++.|++.+.....+......+.+.+..... +.
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 80 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED 80 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence 36899999999999999999988 99999999999876433222111112111111100 00
Q ss_pred ----hHH----HHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 022042 145 ----DEI----VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGK 216 (303)
Q Consensus 145 ----~~~----~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~ 216 (303)
... +...+.+.+... .+.++|+|+. ...+. . +. ...|.+|||++|++++.+|+.+|. |
T Consensus 81 ~~~l~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~-~l~e~-~-~~---~~~d~vi~l~~~~e~~~~Rl~~R~-----~- 146 (206)
T 1jjv_A 81 KLWLNNLLHPAIRERMKQKLAEQ--TAPYTLFVVP-LLIEN-K-LT---ALCDRILVVDVSPQTQLARSAQRD-----N- 146 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC--CSSEEEEECT-TTTTT-T-CG---GGCSEEEEEECCHHHHHHHHC----------
T ss_pred HHHHHhccCHHHHHHHHHHHHhc--CCCEEEEEec-hhhhc-C-cH---hhCCEEEEEECCHHHHHHHHHHcC-----C-
Confidence 001 111112223222 2457888873 21111 0 11 136899999999999999998874 1
Q ss_pred eecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHH----HHHHHHHHHHHHHHH
Q 022042 217 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKE----DVFAQIDVALTNLLE 292 (303)
Q Consensus 217 ~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~e----ev~~~I~~~l~~~l~ 292 (303)
...+.+.+|+..... ..+ .|...-++||++++++ ++.++|.+.+.+++.
T Consensus 147 -----------------------~~~e~~~~r~~~q~~-~~~---~~~~ad~vIdn~~~~~~~~~~~~~~i~~~~~~~~~ 199 (206)
T 1jjv_A 147 -----------------------NNFEQIQRIMNSQVS-QQE---RLKWADDVINNDAELAQNLPHLQQKVLELHQFYLQ 199 (206)
T ss_dssp ------------------------CHHHHHHHHHHSCC-HHH---HHHHCSEEEECCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------CCHHHHHHHHHhcCC-hHH---HHHhCCEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 124445555543211 111 2222236788988999 999999999887665
No 46
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.67 E-value=1.9e-16 Score=135.68 Aligned_cols=177 Identities=16% Similarity=0.153 Sum_probs=97.4
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHhCC-ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHH----------
Q 022042 80 ATVEPLKIMISGAPASGKGTQCELIKEKYGL-VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIV---------- 148 (303)
Q Consensus 80 ~~~~~~~I~I~G~pGSGKSTla~~La~~lg~-~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~---------- 148 (303)
...++++|+|+|++||||||+++.|+++++. ..+++-.+.+ .+.++++++.+++++...........
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tr--eP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~ 94 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTR--EPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRRE 94 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEE--SSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeee--CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 3456789999999999999999999998754 2111100000 12355667777777664222332221
Q ss_pred --HHHHHHHHcCCCCCCCcEEEcCCC------------CCHHHHHHHHHhC--CCCcEEEEEEcCHHHHHHHHhcCCCCC
Q 022042 149 --VTMVKERLSQPDSQENGWLLDGYP------------RSLSQATALKKYG--FQPDLFILLEVPEDTLVERVVGRRLDP 212 (303)
Q Consensus 149 --~~~l~~~l~~~~~~~~~~Vldg~p------------~~~~~~~~l~~~~--~~pd~vI~L~~~~e~~~~Rl~~R~~~~ 212 (303)
...+...+. .+..+|.|.|. ...++...+.... ..||++|||++|++++.+|+ +|.
T Consensus 95 ~~~~~I~paL~----~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~rd--- 166 (223)
T 3ld9_A 95 HFVKIIKPSLM----QKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-CKN--- 166 (223)
T ss_dssp HHHHTHHHHHH----TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC---------------
T ss_pred HHHHHHHHHHh----cCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-ccC---
Confidence 111222222 25567778642 2334444443322 58999999999999999998 331
Q ss_pred CCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042 213 VTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE 292 (303)
Q Consensus 213 ~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~ 292 (303)
|... ...+. .+|+. +.+..+.+.|...+++||+++++++| ++|.+.|.+++.
T Consensus 167 --------------------r~E~---~~~e~-~~rv~---~~y~~la~~~~~~~~vIDa~~sieeV-~~I~~~l~~~lg 218 (223)
T 3ld9_A 167 --------------------GYEF---ADMEF-YYRVR---DGFYDIAKKNPHRCHVITDKSETYDI-DDINFVHLEVIK 218 (223)
T ss_dssp ----------------------------CHHH-HHHHH---HHHHHHHHHCTTTEEEEESSCSSSCC-CHHHHHHHHHHH
T ss_pred --------------------cccc---chHHH-HHHHH---HHHHHHHHHCCCCEEEEcCCCCHHHH-HHHHHHHHHHHh
Confidence 1110 11222 22222 33334455566678999999999999 999999999886
Q ss_pred hh
Q 022042 293 QR 294 (303)
Q Consensus 293 ~~ 294 (303)
..
T Consensus 219 ~~ 220 (223)
T 3ld9_A 219 VL 220 (223)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 47
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.66 E-value=2.8e-16 Score=134.12 Aligned_cols=168 Identities=15% Similarity=0.211 Sum_probs=100.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcC-----CCcChHH----------
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKG-----QLVPDEI---------- 147 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g-----~~~~~~~---------- 147 (303)
++++|+|+|++||||||+++.|++ +|+.+++.|++.+.....+......+.+.+... ..+....
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 467999999999999999999998 999999999998875443333333333332111 0111111
Q ss_pred --------HHHHHH----HHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 022042 148 --------VVTMVK----ERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTG 215 (303)
Q Consensus 148 --------~~~~l~----~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g 215 (303)
....+. ..+... .+.++|+|+ |...... |. ..+|.+|||++|++++.+|+.+|..
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~~~--~~~~vi~~~-~~l~~~~--~~---~~~d~vi~l~~~~e~~~~Rl~~R~~----- 148 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQQA--TSPYVLWVV-PLLVENS--LY---KKANRVLVVDVSPETQLKRTMQRDD----- 148 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--CSSEEEEEC-TTTTTTT--GG---GGCSEEEEEECCHHHHHHHHHHHHT-----
T ss_pred HHHHHHHhHCHHHHHHHHHHHHhc--CCCEEEEEe-eeeeccC--cc---ccCCEEEEEECCHHHHHHHHHHcCC-----
Confidence 111111 111111 133455554 3322111 11 2478999999999999999987631
Q ss_pred ceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042 216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE 292 (303)
Q Consensus 216 ~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~ 292 (303)
...+.+.+++........ .... .-++||++.+++++.++|.+.+..++.
T Consensus 149 ------------------------~~~~~~~~~~~~~~~~~~-~~~~---ad~vId~~~~~~~~~~~I~~~l~~~~~ 197 (218)
T 1vht_A 149 ------------------------VTREHVEQILAAQATREA-RLAV---ADDVIDNNGAPDAIASDVARLHAHYLQ 197 (218)
T ss_dssp ------------------------CCHHHHHHHHHHSCCHHH-HHHH---CSEEEECSSCTTSHHHHHHHHHHHHHH
T ss_pred ------------------------CCHHHHHHHHHhcCChHH-HHHh---CCEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 113334444443211111 1111 226789988999999999999988776
No 48
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.66 E-value=9e-16 Score=127.39 Aligned_cols=161 Identities=20% Similarity=0.219 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHH-cCCCcChHHHHHHHHHHHcCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHME-KGQLVPDEIVVTMVKERLSQPDSQE 163 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~l~~~l~~~~~~~ 163 (303)
++|+|+|+|||||||+|+.|++++|+.+++.|++++... +.. +.+++. .|.....+.....+...+.. .
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~--g~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~----~ 72 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT--GRS----IADIFATDGEQEFRRIEEDVVRAALAD----H 72 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--SSC----HHHHHHHHCHHHHHHHHHHHHHHHHHH----C
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc--CCC----HHHHHHHhChHHHHHHHHHHHHHHHhc----C
Confidence 479999999999999999999999999999999987653 211 222222 22212222222223322221 2
Q ss_pred CcEEEcCC--CCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCc
Q 022042 164 NGWLLDGY--PRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDT 241 (303)
Q Consensus 164 ~~~Vldg~--p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~ 241 (303)
..++.+|. .........+. .+.+|||++|.+++.+|+.+|...+. .. ..+.
T Consensus 73 ~~vi~~g~~~v~~~~~~~~l~-----~~~vV~L~~~~e~~~~Rl~~r~~r~~---------------------~~-~~~~ 125 (184)
T 2iyv_A 73 DGVLSLGGGAVTSPGVRAALA-----GHTVVYLEISAAEGVRRTGGNTVRPL---------------------LA-GPDR 125 (184)
T ss_dssp CSEEECCTTGGGSHHHHHHHT-----TSCEEEEECCHHHHHHHTTCCCCCSS---------------------TT-SCCH
T ss_pred CeEEecCCcEEcCHHHHHHHc-----CCeEEEEeCCHHHHHHHHhCCCCCCC---------------------cc-CCCH
Confidence 22333342 11211222221 56899999999999999988742110 00 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcceEEEcCC-CCHHHHHHHHHHHHH
Q 022042 242 EEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGS-VNKEDVFAQIDVALT 288 (303)
Q Consensus 242 ~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~-~s~eev~~~I~~~l~ 288 (303)
. .++..+.....+.+.. ...++||++ .++++++++|.+.+.
T Consensus 126 ~----~~i~~~~~~r~~~~~~--~~~~~Idt~~~s~ee~~~~I~~~l~ 167 (184)
T 2iyv_A 126 A----EKYRALMAKRAPLYRR--VATMRVDTNRRNPGAVVRHILSRLQ 167 (184)
T ss_dssp H----HHHHHHHHHHHHHHHH--HCSEEEECSSSCHHHHHHHHHTTSC
T ss_pred H----HHHHHHHHHHHHHHhc--cCCEEEECCCCCHHHHHHHHHHHHh
Confidence 2 2233333332332211 134678988 799999999887663
No 49
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.66 E-value=9.8e-16 Score=125.12 Aligned_cols=110 Identities=17% Similarity=0.283 Sum_probs=71.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQE 163 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~~~ 163 (303)
|+|+|+|++||||||+++.|++++|+.+++.|++.+... +..+.+++.. +....... ...+...+.. .
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~------g~~~~~~~~~~~~~~~~~~-~~~~l~~l~~----~ 69 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE------GLSIPQIFEKKGEAYFRKL-EFEVLKDLSE----K 69 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHSCHHHHHHH-HHHHHHHHTT----S
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc------CCCHHHHHHHhChHHHHHH-HHHHHHHHhc----c
Confidence 479999999999999999999999999999999987653 2233333332 21111111 1112223331 3
Q ss_pred CcEEEc-C--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 164 NGWLLD-G--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 164 ~~~Vld-g--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
..+|++ | .+........+. .++++|||++|++++.+|+.+|.
T Consensus 70 ~~~Vi~~g~~~~~~~~~~~~l~----~~~~~i~l~~~~e~~~~R~~~r~ 114 (168)
T 2pt5_A 70 ENVVISTGGGLGANEEALNFMK----SRGTTVFIDIPFEVFLERCKDSK 114 (168)
T ss_dssp SSEEEECCHHHHTCHHHHHHHH----TTSEEEEEECCHHHHHHHCBCTT
T ss_pred CCeEEECCCCEeCCHHHHHHHH----cCCEEEEEECCHHHHHHHHhCCC
Confidence 456665 4 122333333343 26899999999999999998874
No 50
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.66 E-value=7.6e-16 Score=136.92 Aligned_cols=172 Identities=18% Similarity=0.198 Sum_probs=103.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCC-----CcChH----------
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ-----LVPDE---------- 146 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~-----~~~~~---------- 146 (303)
.+|++|+|+|++||||||+|+.|+ .+|+.+|++|++.++....+......+.+.+.... .+...
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~ 151 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNK 151 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCH
Confidence 457899999999999999999999 68999999999988765554443333333221110 01100
Q ss_pred --------HH----HHHHHHHHcCCC-CCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCC
Q 022042 147 --------IV----VTMVKERLSQPD-SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPV 213 (303)
Q Consensus 147 --------~~----~~~l~~~l~~~~-~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~ 213 (303)
.. ...+.+.+.... .....+|+||...... .|. ..+|.+|||++|++++++|+.+|.
T Consensus 152 ~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~---~~~d~vI~l~a~~ev~~~Rl~~R~---- 221 (281)
T 2f6r_A 152 KQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA---GWQ---SMVHEVWTVVIPETEAVRRIVERD---- 221 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT---TGG---GGCSEEEEEECCHHHHHHHHHHHH----
T ss_pred HHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc---chH---HhCCEEEEEcCCHHHHHHHHHHcC----
Confidence 00 011112221110 1135689998521110 011 237899999999999999998873
Q ss_pred CCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 022042 214 TGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQ 293 (303)
Q Consensus 214 ~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~~ 293 (303)
| ...+.+.+|+..+.... .++....++||++.+++++.++|.+.+.+++..
T Consensus 222 -g------------------------~s~e~~~~ri~~q~~~~----~~~~~AD~vIdn~~s~eel~~~I~~~l~~l~~~ 272 (281)
T 2f6r_A 222 -G------------------------LSEAAAQSRLQSQMSGQ----QLVEQSNVVLSTLWESHVTQSQVEKAWNLLQKR 272 (281)
T ss_dssp -C------------------------CCHHHHHHHHHTSCCHH----HHHHTCSEEEECSSCHHHHHHHHHHHHHHHHHH
T ss_pred -C------------------------CCHHHHHHHHHHcCChH----hhHhhCCEEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 1 11333344443331111 111122367899999999999999999887654
No 51
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.65 E-value=2.6e-15 Score=124.99 Aligned_cols=111 Identities=18% Similarity=0.403 Sum_probs=72.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH-hCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCc---ChHHHHHHHHHHHc
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEK-YGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLV---PDEIVVTMVKERLS 157 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~-lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~---~~~~~~~~l~~~l~ 157 (303)
+++++|+|+|++||||||+++.|+++ +|+.++++|+++++. .....++. .+... .+ .++.....+...+.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~-~~~~~~~~----~~~~~-~~~r~~~~~~~~~l~~~~~ 81 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN-HFYTEYDT----ELDTH-IIEEKDEDRLLDFMEPIMV 81 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT-TCSCC----------CC-CCCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh-hhhhhHHH----Hhhhc-ccCCCCHHHHHHHHHHHHh
Confidence 35678999999999999999999999 799999999998873 11111111 11111 12 22333344444332
Q ss_pred CCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 158 QPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 158 ~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
. .+++|+|...... +... .++.+|||++|.+++.+|+.+|.
T Consensus 82 ~----~g~~vi~~~~~~~-----~~~~--~~~~vi~l~~~~e~~~~Rl~~R~ 122 (184)
T 1y63_A 82 S----RGNHVVDYHSSEL-----FPER--WFHMVVVLHTSTEVLFERLTKRQ 122 (184)
T ss_dssp S----SSEEEEECSCCTT-----SCGG--GCSEEEEEECCHHHHHHHHHHTT
T ss_pred c----cCCEEEeCchHhh-----hhhc--cCCEEEEEECCHHHHHHHHHhCC
Confidence 2 3578888643211 1111 26799999999999999999884
No 52
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.64 E-value=9.4e-16 Score=130.88 Aligned_cols=175 Identities=18% Similarity=0.200 Sum_probs=108.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCC-CcChHHHH-----------H
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ-LVPDEIVV-----------T 150 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~-~~~~~~~~-----------~ 150 (303)
++++|+|.|++||||||+++.|+++++....- +++ ...+++.|+.+++++.... ...+.... .
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~----~~e-p~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~ 78 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKL----LKF-PERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD 78 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEE----EES-SCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccceE----EEe-cCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999863211 111 1236778888888887643 22222111 1
Q ss_pred HHHHHHcCCCCCCCcEEEcCCC--------------CCHHHHHHHHHhCCCCcEEEEE-EcCHHHHHHHHhcCCCCCCCC
Q 022042 151 MVKERLSQPDSQENGWLLDGYP--------------RSLSQATALKKYGFQPDLFILL-EVPEDTLVERVVGRRLDPVTG 215 (303)
Q Consensus 151 ~l~~~l~~~~~~~~~~Vldg~p--------------~~~~~~~~l~~~~~~pd~vI~L-~~~~e~~~~Rl~~R~~~~~~g 215 (303)
.+...+. .+..+|.|.|. ....+...+......||++||| |+|++++.+|+..+.
T Consensus 79 ~I~paL~----~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~------ 148 (216)
T 3tmk_A 79 KIKKDLL----EGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD------ 148 (216)
T ss_dssp HHHHHHH----TTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC------
T ss_pred HHHHHHH----cCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc------
Confidence 1222222 25667778642 1233333233345689999999 999999988864331
Q ss_pred ceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHH-HHHHHHHHHHHhhcceEEEc-CCCCHHHHHHHHHHHHHHHHHh
Q 022042 216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKT-HHHNVEAVLSLYEDVTVEVN-GSVNKEDVFAQIDVALTNLLEQ 293 (303)
Q Consensus 216 ~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~-~~~~~~~~~~~~~~~~~~Id-~~~s~eev~~~I~~~l~~~l~~ 293 (303)
+|. + ..+ ..+++.. |.+.......++...+++|| +++++++|.++|.+.|.+.+.+
T Consensus 149 ----------------dr~----E-~~~-f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~~l~~ 206 (216)
T 3tmk_A 149 ----------------ERY----E-TVK-FQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVLST 206 (216)
T ss_dssp ----------------CTT----C-CHH-HHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHS
T ss_pred ----------------ccc----c-HHH-HHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 111 1 122 2233332 32222221222456789999 9999999999999999998875
Q ss_pred h
Q 022042 294 R 294 (303)
Q Consensus 294 ~ 294 (303)
.
T Consensus 207 ~ 207 (216)
T 3tmk_A 207 H 207 (216)
T ss_dssp C
T ss_pred c
Confidence 3
No 53
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.64 E-value=1.6e-15 Score=124.11 Aligned_cols=157 Identities=13% Similarity=0.146 Sum_probs=89.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDS 161 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~ 161 (303)
.|.+|+|+|++||||||+++.|++++|+++++.|+++++.. +..+.+++.. |.....+.....+...+.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~------g~~~~~~~~~~g~~~~~~~~~~~l~~~~~---- 75 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV------GLSVREIFEELGEDNFRMFEKNLIDELKT---- 75 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHTCHHHHHHHHHHHHHHHHT----
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh------CCCHHHHHHHhCHHHHHHHHHHHHHHHHh----
Confidence 46799999999999999999999999999999999987753 2223333332 321111222222333221
Q ss_pred CCCcE-EEc-C--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccC
Q 022042 162 QENGW-LLD-G--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKR 237 (303)
Q Consensus 162 ~~~~~-Vld-g--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r 237 (303)
...+ |+. | ++.. .. + ..++.+|||++|++++.+|+.+|... ++. ..
T Consensus 76 -~~~~~Vi~~g~g~~~~-~~---l----~~~~~vi~l~~~~e~~~~Rl~~r~~~---~r~----------------~~-- 125 (168)
T 1zuh_A 76 -LKTPHVISTGGGIVMH-EN---L----KGLGTTFYLKMDFETLIKRLNQKERE---KRP----------------LL-- 125 (168)
T ss_dssp -CSSCCEEECCGGGGGC-GG---G----TTSEEEEEEECCHHHHHHHHCC---------------------------C--
T ss_pred -cCCCEEEECCCCEech-hH---H----hcCCEEEEEECCHHHHHHHHhccCCC---CCC----------------Cc--
Confidence 1233 443 3 3322 11 2 23789999999999999999887310 000 00
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHH
Q 022042 238 FDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVAL 287 (303)
Q Consensus 238 ~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l 287 (303)
.+ .+.+...+.. ..+.+..+ ..++||++.++++++++|.+.|
T Consensus 126 -~~-~~~~~~~~~~----r~~~~~~~--a~~~Id~~~~~e~~~~~I~~~l 167 (168)
T 1zuh_A 126 -NN-LTQAKELFEK----RQALYEKN--ASFIIDARGGLNNSLKQVLQFI 167 (168)
T ss_dssp -CT-THHHHHHHHH----HHHHHHHT--CSEEEEGGGCHHHHHHHHHHC-
T ss_pred -cC-HHHHHHHHHH----HHHHHHHH--CCEEEECCCCHHHHHHHHHHHh
Confidence 01 2223332222 22222222 3466788889999999987654
No 54
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.64 E-value=4.8e-15 Score=122.07 Aligned_cols=162 Identities=17% Similarity=0.137 Sum_probs=89.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH-HhCCceeehHHHHHHHHHcCCc-----chHHHHHHHHcCCCcChHHHHHHHHHHHc
Q 022042 84 PLKIMISGAPASGKGTQCELIKE-KYGLVHIAAGDLLRAEIAAGSE-----NGKRAKEHMEKGQLVPDEIVVTMVKERLS 157 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~-~lg~~~i~~d~l~~~~~~~~~~-----~~~~i~~~~~~g~~~~~~~~~~~l~~~l~ 157 (303)
|++|+|+|+|||||||+|+.|++ .+|+.+++.|.+... +...+. +...-... ..+.....+...+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~ 73 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQS-IMAHEERDEYKYTKKKEGI-------VTGMQFDTAKSILY 73 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHH-HTTSCCGGGCCCCHHHHHH-------HHHHHHHHHHHHHT
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHH-hhCCCccchhhhchhhhhH-------HHHHHHHHHHHHHh
Confidence 46899999999999999999999 689999998665433 332111 11111000 12223344455553
Q ss_pred CCCCCCCcEEEcCCCCCHHHHHHHHHh---CCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhh
Q 022042 158 QPDSQENGWLLDGYPRSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARL 234 (303)
Q Consensus 158 ~~~~~~~~~Vldg~p~~~~~~~~l~~~---~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL 234 (303)
.. ..+.++|+|+++....+...|.+. ...+..+|||++|.+++.+|+.+|..+
T Consensus 74 ~~-~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~----------------------- 129 (181)
T 1ly1_A 74 GG-DSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK----------------------- 129 (181)
T ss_dssp SC-SSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGG-----------------------
T ss_pred hc-cCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccC-----------------------
Confidence 21 236789999988876665555431 123557999999999999999988510
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHH
Q 022042 235 TKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTN 289 (303)
Q Consensus 235 ~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~ 289 (303)
....+.+.++++.|.... .++ .++||++.+ +++...|...+..
T Consensus 130 ----~~~~~~i~~~~~~~~~~~-----~~~--~~~id~~~~-~~v~~~i~~~l~~ 172 (181)
T 1ly1_A 130 ----AVPIDVLRSMYKSMREYL-----GLP--VYNGTPGKP-KAVIFDVDGTLAK 172 (181)
T ss_dssp ----CCCHHHHHHHHHHHHHHH-----TCC--CC---------------------
T ss_pred ----CCCHHHHHHHHHHhhccC-----CCC--ccccCCCCC-ceeeehhhhhhhc
Confidence 234667777777765541 122 233777664 7777777776654
No 55
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.63 E-value=2.8e-15 Score=128.43 Aligned_cols=178 Identities=17% Similarity=0.167 Sum_probs=98.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHH----cCCcch--HHHHHHHHc-----------------C
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA----AGSENG--KRAKEHMEK-----------------G 140 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~----~~~~~~--~~i~~~~~~-----------------g 140 (303)
+++|+|+|++||||||+++.|++.||+++++.|++++.... .+.++. ..+.++... +
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 46899999999999999999999999999999999987542 333332 222222111 1
Q ss_pred CCcChH-----------------HHHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHH
Q 022042 141 QLVPDE-----------------IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVE 203 (303)
Q Consensus 141 ~~~~~~-----------------~~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~ 203 (303)
..+.+. .+...+........ .++++|+||+.... .....+|++|||+++.+++.+
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~vldg~~~~~-------~~~~~~d~~i~l~~~~e~~~~ 156 (227)
T 1cke_A 85 EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFR-ELPGLIADGRDMGT-------VVFPDAPVKIFLDASSEERAH 156 (227)
T ss_dssp EECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CTTCEEEEESSCCC-------CCCTTCSEEEEEECCHHHHHH
T ss_pred eeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHH-hCCCEEEECCCccc-------eEecCCCEEEEEeCCHHHHHH
Confidence 111111 12222222222222 25789999963211 111247899999999999999
Q ss_pred HHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHH-HHHHHHHHHHHHhhcceEEEcCC-CCHHHHHH
Q 022042 204 RVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLK-THHHNVEAVLSLYEDVTVEVNGS-VNKEDVFA 281 (303)
Q Consensus 204 Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~-~~~~~~~~~~~~~~~~~~~Id~~-~s~eev~~ 281 (303)
|+..+.. ..|. .+.. ++..+.+.+|.. .+.....++...+ ..++||++ .+++++++
T Consensus 157 R~~~~l~--~rg~-------~~~~-----------~~~~~~i~~R~~~~~~~~~~pl~~~~--~~~~Id~~~~~~~ev~~ 214 (227)
T 1cke_A 157 RRMLQLQ--VKGF-------SVNF-----------ERLLAEIKERDDRDRNRAVAPLVPAA--DALVLDSTTLSIEQVIE 214 (227)
T ss_dssp HHHHHHH--HHTC-------CCCH-----------HHHHHHHC-------------CCCCT--TCEEEETTTSCHHHHHH
T ss_pred HHHHHHH--hCCc-------cCCH-----------HHHHHHHHHHHHhhhhhcccCccCCC--CEEEEeCCCCCHHHHHH
Confidence 9543200 0000 0000 011122222222 1222223332222 23678988 89999999
Q ss_pred HHHHHHHHHH
Q 022042 282 QIDVALTNLL 291 (303)
Q Consensus 282 ~I~~~l~~~l 291 (303)
+|.+.+.+.+
T Consensus 215 ~I~~~l~~~~ 224 (227)
T 1cke_A 215 KALQYARQKL 224 (227)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999887654
No 56
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.61 E-value=2.2e-15 Score=124.15 Aligned_cols=158 Identities=18% Similarity=0.157 Sum_probs=91.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHH-cCCCcChHHHHHHHHHHHcCCCCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHME-KGQLVPDEIVVTMVKERLSQPDSQ 162 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~l~~~l~~~~~~ 162 (303)
|++|+|+|+|||||||+++.|++++|+.+++.|++++... +..+.+.+. .+.....+....++. .+..
T Consensus 4 m~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~------g~~~~~~~~~~g~~~~~~~~~~~~~-~l~~---- 72 (175)
T 1via_A 4 AKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF------NQKVSEIFEQKRENFFREQEQKMAD-FFSS---- 72 (175)
T ss_dssp -CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH------TSCHHHHHHHHCHHHHHHHHHHHHH-HHTT----
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHc------CCCHHHHHHHcCHHHHHHHHHHHHH-HHHc----
Confidence 3579999999999999999999999999999999887642 112222222 121111111122222 2322
Q ss_pred CCcEEEc-CCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCc
Q 022042 163 ENGWLLD-GYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDT 241 (303)
Q Consensus 163 ~~~~Vld-g~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~ 241 (303)
...+|++ |.+.... .. +. ..+.+|||++|++++.+|+.+|... .|+...
T Consensus 73 ~~~~vi~~g~~~~~~-~~-l~----~~~~~i~l~~~~e~~~~R~~~r~~~------------------------~r~~~~ 122 (175)
T 1via_A 73 CEKACIATGGGFVNV-SN-LE----KAGFCIYLKADFEYLKKRLDKDEIS------------------------KRPLFY 122 (175)
T ss_dssp CCSEEEECCTTGGGS-TT-GG----GGCEEEEEECCHHHHTTCCCGGGTT------------------------TSCTTC
T ss_pred cCCEEEECCCCEehh-hH-Hh----cCCEEEEEeCCHHHHHHHHhcccCC------------------------CCCCcc
Confidence 2445555 5432211 11 22 2468999999999999998766210 011111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhcceEEEcCC-CCHHHHHHHHHHHHH
Q 022042 242 -EEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGS-VNKEDVFAQIDVALT 288 (303)
Q Consensus 242 -~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~-~s~eev~~~I~~~l~ 288 (303)
.+.+ ........+++.. ...++||++ .++++++++|.+.+.
T Consensus 123 ~~~~i----~~~~~~r~~~y~~--~~~~~Idt~~~~~eev~~~I~~~l~ 165 (175)
T 1via_A 123 DEIKA----KKLYNERLSKYEQ--KANFILNIENKNIDELLSEIKKVIK 165 (175)
T ss_dssp CHHHH----HHHHHHHHHHHHH--HCSEEEECTTCCHHHHHHHHHHHHC
T ss_pred cHHHH----HHHHHHHHHHHHh--cCCEEEECCCCCHHHHHHHHHHHHH
Confidence 2222 2222222222211 145788988 799999999988774
No 57
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.61 E-value=1.6e-14 Score=126.09 Aligned_cols=178 Identities=17% Similarity=0.168 Sum_probs=107.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHHcCCCCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQ 162 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~~ 162 (303)
..+|+|+|++||||||+++.|++.+|+.+++.|.+++... . +..+.+++.. |.....+.....+.......
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~-~----g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~--- 119 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAM-K----GTSVAEIFEHFGESVFREKETEALKKLSLMY--- 119 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHS-T----TSCHHHHHHHHCHHHHHHHHHHHHHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHh-c----CccHHHHHHHhCcHHHHHHHHHHHHHHHhhc---
Confidence 5689999999999999999999999999999999987753 1 2233333333 32222222222233222210
Q ss_pred CCcEEEcC--CCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhcc--CC
Q 022042 163 ENGWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTK--RF 238 (303)
Q Consensus 163 ~~~~Vldg--~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~--r~ 238 (303)
...+|.+| .+........+. .+++|||++|.+++.+|+.++... . ..+.. +.
T Consensus 120 ~~~Via~GgG~v~~~~~~~~l~-----~~~vV~L~a~~e~l~~Rl~~~~~~---~----------------Rpl~~~~~~ 175 (250)
T 3nwj_A 120 HQVVVSTGGGAVIRPINWKYMH-----KGISIWLDVPLEALAHRIAAVGTG---S----------------RPLLHDDES 175 (250)
T ss_dssp SSEEEECCGGGGGSHHHHHHHT-----TSEEEEEECCHHHHHHHHHC---------------------------------
T ss_pred CCcEEecCCCeecCHHHHHHHh-----CCcEEEEECCHHHHHHHHhhcCCC---C----------------CCcccCCCc
Confidence 24455554 444444444443 368999999999999999864210 0 00111 11
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhcceEEE----------cC-CCCHHHHHHHHHHHHHHHHHhh
Q 022042 239 DDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEV----------NG-SVNKEDVFAQIDVALTNLLEQR 294 (303)
Q Consensus 239 ~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~I----------d~-~~s~eev~~~I~~~l~~~l~~~ 294 (303)
++..+....++........+++.. .+.++.+ |. ..++++++++|.+.+..++..+
T Consensus 176 ~d~~~~~~~~l~~l~~eR~~lY~~-ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~~~~ 241 (250)
T 3nwj_A 176 GDTYTAALNRLSTIWDARGEAYTK-ASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEKE 241 (250)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTT-SSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHTC
T ss_pred ccchhhHHHHHHHHHHHHHHHHhh-CCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 222334455666666666665543 2233322 43 5799999999999999988654
No 58
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.60 E-value=7.5e-14 Score=114.75 Aligned_cols=159 Identities=14% Similarity=0.087 Sum_probs=93.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHH----HHcCCcchH-HHHHHHHcCCCcChHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE----IAAGSENGK-RAKEHMEKGQLVPDEIVVTMVKERL 156 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~----~~~~~~~~~-~i~~~~~~g~~~~~~~~~~~l~~~l 156 (303)
+.+.+|+|+|++||||||+++.|++.+|..+++.|++.... ...+..+.. ....++ ..+...+...+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~ 77 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWL--------QALNDAAFAMQ 77 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHH--------HHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCccccccHH--------HHHHHHHHHHH
Confidence 45679999999999999999999999999999998764221 011111110 000000 01111122222
Q ss_pred cCCCCCCCcEEEcC-CCCCHHHHHHHHHhCCCCc-EEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhh
Q 022042 157 SQPDSQENGWLLDG-YPRSLSQATALKKYGFQPD-LFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARL 234 (303)
Q Consensus 157 ~~~~~~~~~~Vldg-~p~~~~~~~~l~~~~~~pd-~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL 234 (303)
. .+..+|+|. +. .......+.+.+ ++ .+|||++|++++.+|+.+|..+.
T Consensus 78 ~----~~~~~vi~~~~~-~~~~~~~l~~~~--~~~~vv~l~~~~e~~~~R~~~R~~~~---------------------- 128 (175)
T 1knq_A 78 R----TNKVSLIVCSAL-KKHYRDLLREGN--PNLSFIYLKGDFDVIESRLKARKGHF---------------------- 128 (175)
T ss_dssp H----HCSEEEEECCCC-SHHHHHHHHTTC--TTEEEEEEECCHHHHHHHHHTSTTCC----------------------
T ss_pred h----cCCcEEEEeCch-HHHHHHHHHhcC--CCEEEEEEECCHHHHHHHHHhccCCC----------------------
Confidence 1 145688884 43 333444454432 45 79999999999999999885211
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHHHhhc-ceEEEcCCCCHHHHHHHHHHHHH
Q 022042 235 TKRFDDTEEKVKLRLKTHHHNVEAVLSLYED-VTVEVNGSVNKEDVFAQIDVALT 288 (303)
Q Consensus 235 ~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~-~~~~Id~~~s~eev~~~I~~~l~ 288 (303)
...+.+...+..+ ++. +|.. ..++||++.+++++.++|.+.+.
T Consensus 129 -----~~~~~~~~~~~~~----~~~--~~~~~~~~~Id~~~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 129 -----FKTQMLVTQFETL----QEP--GADETDVLVVDIDQPLEGVVASTIEVIK 172 (175)
T ss_dssp -----CCHHHHHHHHHHC----CCC--CTTCTTEEEEECSSCHHHHHHHHHHHHH
T ss_pred -----CchHHHHHHHHhh----hCc--ccCCCCeEEEeCCCCHHHHHHHHHHHHh
Confidence 0122222111111 110 1322 46789999999999999988764
No 59
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.60 E-value=3.7e-15 Score=125.68 Aligned_cols=166 Identities=18% Similarity=0.234 Sum_probs=95.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCC-----CcC-----------hHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ-----LVP-----------DEI 147 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~-----~~~-----------~~~ 147 (303)
|++|+|+|++||||||+++.|++ +|+.+++.|+++++....+......+.+.+.... ... .+.
T Consensus 1 m~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 79 (204)
T 2if2_A 1 MKRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEK 79 (204)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHH
T ss_pred CeEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHH
Confidence 36899999999999999999999 9999999999987643322222222222221110 010 110
Q ss_pred ---HHHHHHHHHcCC------CCCC-CcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCce
Q 022042 148 ---VVTMVKERLSQP------DSQE-NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKI 217 (303)
Q Consensus 148 ---~~~~l~~~l~~~------~~~~-~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~ 217 (303)
+..+....+... ...+ ..+|+|+.-..... +. ..+|.+|||++|++++.+|+.+|..
T Consensus 80 ~~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~~---~~---~~~~~~i~l~~~~e~~~~Rl~~R~~------- 146 (204)
T 2if2_A 80 LRKLEEITHRALYKEIEKITKNLSEDTLFILEASLLVEKG---TY---KNYDKLIVVYAPYEVCKERAIKRGM------- 146 (204)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTTT---CG---GGSSEEEEECCCHHHHHHHHHHTCC-------
T ss_pred HHHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccccccCC---ch---hhCCEEEEEECCHHHHHHHHHHcCC-------
Confidence 011111111110 0112 57888873111000 11 1378999999999999999988731
Q ss_pred ecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042 218 YHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL 290 (303)
Q Consensus 218 ~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~ 290 (303)
..+.+.+++..+.. ...++....++||++.+++++.++|.+.+.++
T Consensus 147 -----------------------~~~~~~~~~~~~~~----~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~~ 192 (204)
T 2if2_A 147 -----------------------SEEDFERRWKKQMP----IEEKVKYADYVIDNSGSIEETYKQVKKVYEEL 192 (204)
T ss_dssp -----------------------CHHHHHHHHTTSCC----HHHHGGGCSEECCCSSCHHHHHHHHHHHHHTT
T ss_pred -----------------------CHHHHHHHHHhCCC----hhHHHhcCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 01223333322211 11122222367899999999999999888654
No 60
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.60 E-value=1.3e-14 Score=120.07 Aligned_cols=109 Identities=22% Similarity=0.295 Sum_probs=70.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~ 162 (303)
++.+|+|+|++||||||+++.|++++|+.+++.|+++++.. .....+... .......+.+...+...+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---- 79 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQ-LYDGYDEEY-----DCPILDEDRVVDELDNQMRE---- 79 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHT-CEEEEETTT-----TEEEECHHHHHHHHHHHHHH----
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcc-hhhhhhhhh-----cCccCChHHHHHHHHHHHhc----
Confidence 45689999999999999999999999999999999987651 000000000 00011223333344433332
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 163 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 163 ~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
+++|+|...... +.. ..++.+|||+++++++.+|+.+|+
T Consensus 80 -g~~vv~~~~~~~-----~~~--~~~~~vi~L~~~~e~l~~R~~~r~ 118 (180)
T 3iij_A 80 -GGVIVDYHGCDF-----FPE--RWFHIVFVLRTDTNVLYERLETRG 118 (180)
T ss_dssp -CCEEEECSCCTT-----SCG--GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred -CCEEEEechhhh-----cch--hcCCEEEEEECCHHHHHHHHHHcC
Confidence 467777543221 111 126899999999999999999885
No 61
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.59 E-value=9.3e-15 Score=123.17 Aligned_cols=161 Identities=16% Similarity=0.170 Sum_probs=94.6
Q ss_pred cccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChH-------HHHHH
Q 022042 79 SATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE-------IVVTM 151 (303)
Q Consensus 79 ~~~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~-------~~~~~ 151 (303)
+....+.+|+|+|++||||||+++.|+..+|..+++.+++...... .....+....+. .+...
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~----------~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENI----------ATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHH----------HHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHH----------HHHhcCCCCCCcccccHHHHHHHH
Confidence 3445667999999999999999999999999999998876422100 011112111111 11112
Q ss_pred HHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH
Q 022042 152 VKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA 231 (303)
Q Consensus 152 l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~ 231 (303)
+...+. .+..+|+|.........+.+.+.. .+..+|||++|.+++.+|+.+|..++.
T Consensus 94 ~~~~~~----~g~~viid~~~~~~~~~~~l~~~~-~~~~vv~l~~~~e~l~~Rl~~R~~~~~------------------ 150 (200)
T 4eun_A 94 MDARAD----AGVSTIITCSALKRTYRDVLREGP-PSVDFLHLDGPAEVIKGRMSKREGHFM------------------ 150 (200)
T ss_dssp HHHHHH----TTCCEEEEECCCCHHHHHHHTTSS-SCCEEEEEECCHHHHHHHHTTCSCCSS------------------
T ss_pred HHHHHh----cCCCEEEEchhhhHHHHHHHHHhC-CceEEEEEeCCHHHHHHHHHhcccCCC------------------
Confidence 222222 245678876434444444444332 255899999999999999998853211
Q ss_pred hhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhc-ceEEEcCCCCHHHHHHHHHHHHH
Q 022042 232 ARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED-VTVEVNGSVNKEDVFAQIDVALT 288 (303)
Q Consensus 232 ~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~-~~~~Id~~~s~eev~~~I~~~l~ 288 (303)
..+.+...+.. ....|.. ..++||++.+++++.++|.+.+.
T Consensus 151 ---------~~~~l~~~~~~-------~~~~~~~~~~~~Id~~~~~~e~~~~I~~~l~ 192 (200)
T 4eun_A 151 ---------PASLLQSQLAT-------LEALEPDESGIVLDLRQPPEQLIERALTWLD 192 (200)
T ss_dssp ---------CGGGHHHHHHH-------CCCCCTTSCEEEEETTSCHHHHHHHHHHHHC
T ss_pred ---------CHHHHHHHHHH-------hCCCCCCCCeEEEECCCCHHHHHHHHHHHHH
Confidence 01111111111 1112222 46789999999999999988775
No 62
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.59 E-value=2.8e-14 Score=119.82 Aligned_cols=168 Identities=15% Similarity=0.113 Sum_probs=91.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHH---HHHHcCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMV---KERLSQPDS 161 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l---~~~l~~~~~ 161 (303)
|+|+|+|++||||||+++.|+++++..++.... .+... +..+.......+.......+ ...+.....
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 70 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPV-------EENPY---FEQYYKDLKKTVFKMQIYMLTARSKQLKQAKN 70 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCG-------GGCTT---HHHHTTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEcccc-------cccHH---HHHHHhCccccchhHHHHHHHHHHHHHHHhhc
Confidence 479999999999999999999999987664210 00000 11111000000000000111 122322222
Q ss_pred CCCcEEEcCCCCCHHHH---------------H---H-HHHh----------CCCCcEEEEEEcCHHHHHHHHhcCCCCC
Q 022042 162 QENGWLLDGYPRSLSQA---------------T---A-LKKY----------GFQPDLFILLEVPEDTLVERVVGRRLDP 212 (303)
Q Consensus 162 ~~~~~Vldg~p~~~~~~---------------~---~-l~~~----------~~~pd~vI~L~~~~e~~~~Rl~~R~~~~ 212 (303)
.+.+|+|+++....-. . . +... ...+|++|||++|++++++|+.+|.
T Consensus 71 -~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~--- 146 (205)
T 2jaq_A 71 -LENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRG--- 146 (205)
T ss_dssp ---CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHT---
T ss_pred -cCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcC---
Confidence 2348999876531110 0 0 1111 2468999999999999999998763
Q ss_pred CCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHh--hcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042 213 VTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY--EDVTVEVNGSVNKEDVFAQIDVALTNL 290 (303)
Q Consensus 213 ~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~--~~~~~~Id~~~s~eev~~~I~~~l~~~ 290 (303)
+. +... ... ...+++..++.. +...| ....++||++.++++++++|.+.+.++
T Consensus 147 ---r~----------------~~~~--~~~-~~~~~l~~~~~~---~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~~ 201 (205)
T 2jaq_A 147 ---RS----------------EELL--IGE-EYWETLNKNYEE---FYKQNVYDFPFFVVDAELDVKTQIELIMNKLNSI 201 (205)
T ss_dssp ---CH----------------HHHH--SCH-HHHHHHHHHHHH---HHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred ---Ch----------------hhhc--CcH-HHHHHHHHHHHH---HHHHccccCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence 10 1000 001 223344443332 34455 346788999999999999999988764
Q ss_pred H
Q 022042 291 L 291 (303)
Q Consensus 291 l 291 (303)
.
T Consensus 202 ~ 202 (205)
T 2jaq_A 202 K 202 (205)
T ss_dssp -
T ss_pred c
Confidence 4
No 63
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.57 E-value=7.1e-15 Score=123.53 Aligned_cols=169 Identities=18% Similarity=0.180 Sum_probs=95.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHc---CCCcChHHHH--------
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK---GQLVPDEIVV-------- 149 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~---g~~~~~~~~~-------- 149 (303)
..++++|+|+|++||||||+++.|++. |+.+++.|++++... .+.+ ..+.+.+.. ...+....+.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~ 80 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGRLDRRALARLVFSDPE 80 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTEECHHHHHHHHTTSHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCCcCHHHHHHHHhCCHH
Confidence 346789999999999999999999998 999999999987765 2211 122222110 0111111110
Q ss_pred ----------HHH-HHHHcCC-CCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCce
Q 022042 150 ----------TMV-KERLSQP-DSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKI 217 (303)
Q Consensus 150 ----------~~l-~~~l~~~-~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~ 217 (303)
..+ ...+... ...+..+|+|+ |..... .+. ..+|.+|||+++++++.+|+.+|.. .
T Consensus 81 ~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~-~~l~~~--~~~---~~~d~~i~l~~~~e~~~~R~~~R~~-----~- 148 (203)
T 1uf9_A 81 RLKALEAVVHPEVRRLLMEELSRLEAPLVFLEI-PLLFEK--GWE---GRLHGTLLVAAPLEERVRRVMARSG-----L- 148 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEEC-TTTTTT--TCG---GGSSEEEEECCCHHHHHHHHHTTTC-----C-
T ss_pred HHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEe-cceecc--Cch---hhCCEEEEEECCHHHHHHHHHHcCC-----C-
Confidence 111 0111111 11135677786 221110 011 1368999999999999999998731 0
Q ss_pred ecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042 218 YHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE 292 (303)
Q Consensus 218 ~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~ 292 (303)
+.+++..++..+ .... .....+ -++||++.+++++.++|.+.+..++.
T Consensus 149 --------~~~~~~~~i~~~---------------~~~~-~~~~~a---d~vId~~~~~~~~~~~i~~~~~~~~~ 196 (203)
T 1uf9_A 149 --------SREEVLARERAQ---------------MPEE-EKRKRA---TWVLENTGSLEDLERALKAVLAELTG 196 (203)
T ss_dssp --------TTHHHHHHHTTS---------------CCHH-HHHHHC---SEEECCSSHHHHHHHHHHHHHHSCCC
T ss_pred --------CHHHHHHHHHHC---------------CChh-HHHHhC---CEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 011222222221 1110 011111 25789888999999999988876543
No 64
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.55 E-value=1.3e-14 Score=127.42 Aligned_cols=111 Identities=16% Similarity=0.142 Sum_probs=72.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH---hCCcee--ehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHc
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK---YGLVHI--AAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLS 157 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~---lg~~~i--~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~ 157 (303)
+|++|+|+|+|||||||+|+.|++. +|+.++ +.|.+.... ......+.. . ........+...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l-~~~~~~~e~---~-------~~~~~~~~i~~~l~ 71 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESF-PVWKEKYEE---F-------IKKSTYRLIDSALK 71 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTS-SSCCGGGHH---H-------HHHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHH-hhhhHHHHH---H-------HHHHHHHHHHHHhh
Confidence 5789999999999999999999998 688777 776654221 110000000 0 01111223333332
Q ss_pred CCCCCCCcEEEcCCCCCHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 158 QPDSQENGWLLDGYPRSLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 158 ~~~~~~~~~Vldg~p~~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
. ..+|+|+.+........+.. ....++++|||++|++++.+|+.+|.
T Consensus 72 ----~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~ 121 (260)
T 3a4m_A 72 ----N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG 121 (260)
T ss_dssp ----T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT
T ss_pred ----C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC
Confidence 2 67999986655554444433 34468899999999999999998874
No 65
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.54 E-value=8.8e-14 Score=113.95 Aligned_cols=163 Identities=15% Similarity=0.203 Sum_probs=87.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE 163 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~ 163 (303)
+++|+|+|++||||||+++.|++.+|+.+++.|++++... +...+...+.. |..........++. .+.. .
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~--~~~i~~i~~~~---g~~~~~~~~~~~l~-~l~~----~ 73 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADVGWVFDLE---GEEGFRDREEKVIN-ELTE----K 73 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH--TSCHHHHHHHH---HHHHHHHHHHHHHH-HHHT----S
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh--CcCHHHHHHHH---hHHHHHHHHHHHHH-HHHh----C
Confidence 4689999999999999999999999999999998877542 22222111111 10000111112222 2222 2
Q ss_pred CcEEEc---CCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCC
Q 022042 164 NGWLLD---GYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD 240 (303)
Q Consensus 164 ~~~Vld---g~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d 240 (303)
..+++. +.+........+.. .++++||+++++++.+|+.+|...+. .. ..+
T Consensus 74 ~~~v~~~~~~~~~~~~~~~~l~~----~~~~i~l~~~~~~l~~R~~~r~~r~~---------------------~~-~~~ 127 (173)
T 1kag_A 74 QGIVLATGGGSVKSRETRNRLSA----RGVVVYLETTIEKQLARTQRDKKRPL---------------------LH-VET 127 (173)
T ss_dssp SSEEEECCTTGGGSHHHHHHHHH----HSEEEECCCCHHHHHSCC------CC---------------------SS-SSC
T ss_pred CCeEEECCCeEEecHHHHHHHHh----CCEEEEEeCCHHHHHHHHhCCCCCCC---------------------CC-CCC
Confidence 345553 33333333344443 45899999999999999987742110 00 111
Q ss_pred c-HHHHHHHHHHHHHHHHHHHHHhhcceEEEcCC-CCHHHHHHHHHHHHH
Q 022042 241 T-EEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGS-VNKEDVFAQIDVALT 288 (303)
Q Consensus 241 ~-~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~-~s~eev~~~I~~~l~ 288 (303)
. .+.+. .+.....+.+... ..++||++ .++++++++|.+.+.
T Consensus 128 ~~~~~~~----~~~~~r~~~~~~~--a~~~id~~~~~~~~~~~~i~~~l~ 171 (173)
T 1kag_A 128 PPREVLE----ALANERNPLYEEI--ADVTIRTDDQSAKVVANQIIHMLE 171 (173)
T ss_dssp CCHHHHH----HHHHHHHHHHHHH--CSEEC-----CHHHHHHHHHHHHC
T ss_pred chHHHHH----HHHHHHHHHHHhh--CCEEEECCCCCHHHHHHHHHHHHH
Confidence 1 33322 2223323322222 34678887 799999999988774
No 66
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.54 E-value=2e-13 Score=112.83 Aligned_cols=158 Identities=13% Similarity=0.154 Sum_probs=87.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcee-ehHHHHHHHHHcCCcchHHHHHHHHcCCCc----Ch--HHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHI-AAGDLLRAEIAAGSENGKRAKEHMEKGQLV----PD--EIVVTMVKER 155 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i-~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~----~~--~~~~~~l~~~ 155 (303)
+|++|+|+|+|||||||+++.|++++|+.++ +.+.+ +..+.+++..+... .. +.+...+...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~-----------g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~ 72 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEM-----------GQALRKLTPGFSGDPQEHPMWIPLMLDALQYA 72 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHH-----------HHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhh-----------HHHHHHhCccccchhhhhHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999888 43211 11222222211100 00 2223344443
Q ss_pred HcCCCCCCCcEEEcCCCCCHHHH----HHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHH
Q 022042 156 LSQPDSQENGWLLDGYPRSLSQA----TALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA 231 (303)
Q Consensus 156 l~~~~~~~~~~Vldg~p~~~~~~----~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~ 231 (303)
+.. .+..+|+|+........ ..+...+. .-.+|||++|++++.+|+.+|..+
T Consensus 73 l~~---~g~~vi~d~~~~~~~~~~~~~~~l~~~~~-~~~~i~l~~~~e~~~~R~~~R~~r-------------------- 128 (183)
T 2vli_A 73 SRE---AAGPLIVPVSISDTARHRRLMSGLKDRGL-SVHHFTLIAPLNVVLERLRRDGQP-------------------- 128 (183)
T ss_dssp HHH---CSSCEEEEECCCCHHHHHHHHHHHHHTTC-CCEEEEEECCHHHHHHHHHTC-----------------------
T ss_pred HHh---CCCcEEEeeeccCHHHHHHHHHHHHhcCC-ceEEEEEeCCHHHHHHHHHhcccc--------------------
Confidence 322 14557778643333222 22333332 235699999999999999988411
Q ss_pred hhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCC-CCHHHHHHHHHHHHHHHH
Q 022042 232 ARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGS-VNKEDVFAQIDVALTNLL 291 (303)
Q Consensus 232 ~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~-~s~eev~~~I~~~l~~~l 291 (303)
. ...+. +..+...+.++ . | .+ +||++ .+++++.++|.+.+...+
T Consensus 129 ------~-~~~~~----~~~~~~~~~~~-~-~--~~-~Id~~~~~~~~~~~~I~~~l~~~~ 173 (183)
T 2vli_A 129 ------Q-VNVGT----VEDRLNELRGE-Q-F--QT-HIDTAGLGTQQVAEQIAAQVGLTL 173 (183)
T ss_dssp --------CCHHH----HHHHHHHHTSG-G-G--CS-EEECTTCCHHHHHHHHHHHHTCCC
T ss_pred ------c-hhHHH----HHHHHHhhccc-c-c--ce-EeeCCCCCHHHHHHHHHHHHHHhc
Confidence 0 11222 22233333333 2 3 23 78887 899999999998886544
No 67
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.53 E-value=3.4e-13 Score=113.60 Aligned_cols=163 Identities=18% Similarity=0.161 Sum_probs=94.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHH----cCCcc--hHHHHHHHH-----------------cCCC
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA----AGSEN--GKRAKEHME-----------------KGQL 142 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~----~~~~~--~~~i~~~~~-----------------~g~~ 142 (303)
+|+|+|++||||||+++.|++.+|+++++.|++.+.... .+.+. ...+.+... .|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED 83 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence 899999999999999999999999999999999887532 22211 112222211 1111
Q ss_pred cCh----H-------------HHHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHH
Q 022042 143 VPD----E-------------IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERV 205 (303)
Q Consensus 143 ~~~----~-------------~~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl 205 (303)
++. . .+...+...+.... +++|+||.... ......+|++|||++|++++.+|+
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~vi~g~~~~-------~~~~~~~d~~i~l~a~~e~~~~R~ 153 (208)
T 3ake_A 84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP---PPFVAEGRDMG-------TAVFPEAAHKFYLTASPEVRAWRR 153 (208)
T ss_dssp CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC---SCEEEEESSCC-------CCCCTTCSEEEEEECCHHHHHHHH
T ss_pred CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc---CCEEEEcccee-------EEEecCCcEEEEEECCHHHHHHHH
Confidence 111 1 11112222221121 57899985322 001124689999999999999999
Q ss_pred hcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCC-CHHHHHHHHH
Q 022042 206 VGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSV-NKEDVFAQID 284 (303)
Q Consensus 206 ~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~-s~eev~~~I~ 284 (303)
.+|.. ...+.+.+++.............+ ...++||++. +++++.++|.
T Consensus 154 ~~r~~-----------------------------~~~~~~~~~~~~R~~~~~~~~~~~-ad~~~Id~~~~~~ee~~~~I~ 203 (208)
T 3ake_A 154 ARERP-----------------------------QAYEEVLRDLLRRDERDKAQSAPA-PDALVLDTGGMTLDEVVAWVL 203 (208)
T ss_dssp HHTSS-----------------------------SCHHHHHHHHHHHHHTC--CCCCC-TTCEEEETTTSCHHHHHHHHH
T ss_pred Hhhcc-----------------------------cCHHHHHHHHHHHHHHHhhcccCC-CCEEEEECCCCCHHHHHHHHH
Confidence 88731 112333333332111100000001 1237789885 9999999998
Q ss_pred HHHH
Q 022042 285 VALT 288 (303)
Q Consensus 285 ~~l~ 288 (303)
+.++
T Consensus 204 ~~~~ 207 (208)
T 3ake_A 204 AHIR 207 (208)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 68
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.53 E-value=6.8e-15 Score=124.49 Aligned_cols=171 Identities=17% Similarity=0.150 Sum_probs=97.1
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh-CCceeehHHHHHHHHHcCCcchHHHHHHHHcC---CCcChHHHHHHHHHH
Q 022042 80 ATVEPLKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKG---QLVPDEIVVTMVKER 155 (303)
Q Consensus 80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l-g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g---~~~~~~~~~~~l~~~ 155 (303)
....+.+|+|+|++||||||+++.|++.+ ++.+++.|++++....- ..+. ..+... ..+....+...+...
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~l~~~i~~~ 91 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEI--ETDK---NGFLQYDVLEALNMEKMMSAISCW 91 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGS--CBCT---TSCBCCSSGGGBCHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHh--hccc---cCCChhHHHHHhHHHHHHHHHHHH
Confidence 34456799999999999999999999988 89999999876432000 0000 000000 001111222222111
Q ss_pred HcC---C--------CCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCC
Q 022042 156 LSQ---P--------DSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSP 224 (303)
Q Consensus 156 l~~---~--------~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~ 224 (303)
+.. . ......+|+||+.... .......+|.+|||+++++++.+|+..|....
T Consensus 92 l~~~~~~~~~~~~~~~~~~~~vi~eg~~~~~-----~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~------------ 154 (207)
T 2qt1_A 92 MESARHSVVSTDQESAEEIPILIIEGFLLFN-----YKPLDTIWNRSYFLTIPYEECKRRRSTRVYQP------------ 154 (207)
T ss_dssp HHHHTTSSCCC-----CCCCEEEEECTTCTT-----CGGGTTTCSEEEEEECCHHHHHHHHHHSCCSS------------
T ss_pred HhCCCCCCcCCCeeecCCCCEEEEeehHHcC-----cHHHHHhcCeeEEEECCHHHHHHHHHHcCCCc------------
Confidence 110 0 0124578999964221 11122358999999999999999998774210
Q ss_pred CCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHH---HHhhcceEEEcCCCCHHHHHHHHHHHHHH
Q 022042 225 PETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL---SLYEDVTVEVNGSVNKEDVFAQIDVALTN 289 (303)
Q Consensus 225 p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~---~~~~~~~~~Id~~~s~eev~~~I~~~l~~ 289 (303)
++..+.+.. .++..+.... ..+.+.++.||++.+++++.++|.+.+.+
T Consensus 155 --------------e~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~ 205 (207)
T 2qt1_A 155 --------------PDSPGYFDG---HVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ 205 (207)
T ss_dssp --------------CCCTTHHHH---THHHHHHHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred --------------cchHHHHHH---HHhHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence 000111111 1111112222 22335677899999999999999988754
No 69
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.52 E-value=7.4e-13 Score=115.66 Aligned_cols=41 Identities=24% Similarity=0.448 Sum_probs=37.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE 122 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~ 122 (303)
..+.+|+|+|++||||||+++.|+++||+.+++.|.+++..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~ 65 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVL 65 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHh
Confidence 34579999999999999999999999999999999998664
No 70
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.52 E-value=1e-14 Score=127.47 Aligned_cols=177 Identities=21% Similarity=0.243 Sum_probs=98.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc----------eeehHHHHHHHHHcCCcchHHHHHHHHcCCCc-------C
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV----------HIAAGDLLRAEIAAGSENGKRAKEHMEKGQLV-------P 144 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~----------~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~-------~ 144 (303)
.+|++|+|+|++||||||+|+.|++++|+. ++++|++++.. ....+. ....+... .
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~------~~~~~~-~~~~g~~~f~~~~~~d 92 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL------TSEQKA-KALKGQFNFDHPDAFD 92 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC------CHHHHH-HHHTTCSCTTSGGGBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccccc------Chhhhh-hhccCCCCCCCcchhh
Confidence 457899999999999999999999999987 79999887521 011111 11112111 1
Q ss_pred hHHHHHHHHHHHcCC--------------------CCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHH
Q 022042 145 DEIVVTMVKERLSQP--------------------DSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204 (303)
Q Consensus 145 ~~~~~~~l~~~l~~~--------------------~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~R 204 (303)
.+.+...+....... ......+|+||....... .+.. .+|.+|||+++++++++|
T Consensus 93 ~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~--~~~~---~~d~vi~l~~~~e~~~~R 167 (252)
T 1uj2_A 93 NELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ--EVRD---LFQMKLFVDTDADTRLSR 167 (252)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH--HHHH---HCSEEEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCH--HHHH---hcCeeEEEeCCHHHHHHH
Confidence 112233333322100 012457999995432111 1222 267999999999999999
Q ss_pred HhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHH-HHHHHH-HHhhcceEEE----cCCCCHHH
Q 022042 205 VVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHH-NVEAVL-SLYEDVTVEV----NGSVNKED 278 (303)
Q Consensus 205 l~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~-~~~~~~-~~~~~~~~~I----d~~~s~ee 278 (303)
+..|.. ..+. ...+.+.+++..... .+.... ..+...-++| |++.++++
T Consensus 168 ~~~R~~------------------------~~rg-~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~ 222 (252)
T 1uj2_A 168 RVLRDI------------------------SERG-RDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINL 222 (252)
T ss_dssp HHHHHH------------------------HHSC-CCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHH
T ss_pred HHHHHH------------------------hhhC-CCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHH
Confidence 987631 1111 124445445443221 111111 1122222344 88889999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 022042 279 VFAQIDVALTNLLEQRK 295 (303)
Q Consensus 279 v~~~I~~~l~~~l~~~~ 295 (303)
++++|.+.+...+.+.+
T Consensus 223 v~~~I~~~l~~~~~~~~ 239 (252)
T 1uj2_A 223 IVQHIQDILNGGPSKRQ 239 (252)
T ss_dssp HHHHHHHHHHC------
T ss_pred HHHHHHHHHccchhhhh
Confidence 99999999987776544
No 71
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.52 E-value=9.2e-14 Score=117.39 Aligned_cols=171 Identities=12% Similarity=0.210 Sum_probs=94.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCC-ceeehHHHHHHHHH---cCCc----chHHHHHHHHcCCCcChH------
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGL-VHIAAGDLLRAEIA---AGSE----NGKRAKEHMEKGQLVPDE------ 146 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~-~~i~~d~l~~~~~~---~~~~----~~~~i~~~~~~g~~~~~~------ 146 (303)
+..+++|+|+|++||||||+++.|++.++. ..++.....|.... .+.. ..+.+......+..+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNF 88 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCe
Confidence 446679999999999999999999998842 22211111100000 0000 001112222222221100
Q ss_pred --HHHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCC-CcEEEEEE-cCHHHHHHHHhcCCCCCCCCceecccC
Q 022042 147 --IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQ-PDLFILLE-VPEDTLVERVVGRRLDPVTGKIYHVKY 222 (303)
Q Consensus 147 --~~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~-pd~vI~L~-~~~e~~~~Rl~~R~~~~~~g~~~~~~~ 222 (303)
.....+...+.. +..+|+|+.+.... .+.+.... ..++|||+ ++.+++.+|+.+|..
T Consensus 89 ~~~~~~~i~~~l~~----g~~vi~d~~~~~~~---~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~------------ 149 (204)
T 2qor_A 89 YGTLKSEYDLAVGE----GKICLFEMNINGVK---QLKESKHIQDGIYIFVKPPSIDILLGRLKNRNT------------ 149 (204)
T ss_dssp EEEEHHHHHHHHHT----TCEEEEECCHHHHH---HHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTT------------
T ss_pred ecCCHHHHHHHHHc----CCeEEEEECHHHHH---HHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCC------------
Confidence 001122333332 67899997553332 23332210 13789999 999999999988741
Q ss_pred CCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHH-HHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHH
Q 022042 223 SPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEA-VLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLL 291 (303)
Q Consensus 223 ~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~-~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l 291 (303)
+.++.+.+|+...+....+ ....+ + ++|+++ ++++++++|.+.|...+
T Consensus 150 -----------------~~~~~i~~rl~~~~~~~~~~~~~~~-d--~vi~n~-~~e~~~~~i~~~i~~~~ 198 (204)
T 2qor_A 150 -----------------EKPEEINKRMQELTREMDEADKVGF-N--YFIVND-DLARTYAELREYLLGSY 198 (204)
T ss_dssp -----------------SCHHHHHHHHHHHHHHHHHHHHHTC-S--EEEECS-SHHHHHHHHHHHHHHHC
T ss_pred -----------------CCHHHHHHHHHHHHHHHHHhhhccC-c--EEEECc-CHHHHHHHHHHHHHHHh
Confidence 2356677777766544332 22222 2 235555 89999999999997654
No 72
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.51 E-value=1.4e-14 Score=129.54 Aligned_cols=122 Identities=21% Similarity=0.173 Sum_probs=76.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh-CCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l-g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~ 162 (303)
+++|+|+|+|||||||+++.|++++ |+.+++.|. ++..+..... +.. ..+...+.....+.+...+...+... ..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~-~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 77 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGG-DS 77 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHH-HHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSC-TT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccH-HHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhc-cC
Confidence 3689999999999999999999985 999999994 4444332111 100 00000000001122223334444211 33
Q ss_pred CCcEEEcCCCCCHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 163 ENGWLLDGYPRSLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 163 ~~~~Vldg~p~~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
+.++|+|+++....+...|.+ ....+..+|||++|.+++++|+.+|.
T Consensus 78 g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~ 127 (301)
T 1ltq_A 78 VKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG 127 (301)
T ss_dssp CCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCG
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhcc
Confidence 678999998877666555543 22345689999999999999999885
No 73
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.50 E-value=1.6e-13 Score=116.95 Aligned_cols=171 Identities=16% Similarity=0.225 Sum_probs=97.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHH----HHcCCcchHHHHHH-------H-----------HcC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE----IAAGSENGKRAKEH-------M-----------EKG 140 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~----~~~~~~~~~~i~~~-------~-----------~~g 140 (303)
++++|+|+|++||||||+++.|++.+|+.+++.|.+++.. ...+. +..+.+. + ..|
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~f~~~~~~g~~i~~~g 79 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNK--TEDFAKLVDQTTLDLTYKADKGQCVILDN 79 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTS--CSCHHHHHHTCCEEEEECTTCCEEEEETT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhh--hHHHHHHHHhccccccccccccceEEeCC
Confidence 4578999999999999999999999999999999999864 23332 2233332 1 122
Q ss_pred CCcCh----HHHH-------------HHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHH
Q 022042 141 QLVPD----EIVV-------------TMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVE 203 (303)
Q Consensus 141 ~~~~~----~~~~-------------~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~ 203 (303)
..+.. ..+. ..+....... ..++++|++|-... .......+++|||++|++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~-~~~~~~vi~g~~~~-------~~~~~~~~~vi~l~a~~e~~~~ 151 (219)
T 2h92_A 80 EDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKEL-AAEKGIVMDGRDIG-------TVVLPDADLKVYMIASVEERAE 151 (219)
T ss_dssp EECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHH-HTTCCEEEEESSCC-------CCCCTTCSEEEEEECCHHHHHH
T ss_pred ccchhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHh-ccCCcEEEEcCCcc-------ceecCCCCEEEEEECCHHHHHH
Confidence 21111 1111 1111111111 12467999983110 0011236789999999999999
Q ss_pred HHhcCCCCCCCCceecccCCCCCchHHHhhhccCC-CCcHHHHHHHHHHHH--HHHHHHHHHhhc-ceEEEcCC-CCHHH
Q 022042 204 RVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF-DDTEEKVKLRLKTHH--HNVEAVLSLYED-VTVEVNGS-VNKED 278 (303)
Q Consensus 204 Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~-~d~~e~~~~r~~~~~--~~~~~~~~~~~~-~~~~Id~~-~s~ee 278 (303)
|+.++. ..|. .+..+.+.+++.... .....+...|.. ..++||++ .++++
T Consensus 152 R~~~~~-------------------------~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~~~~~ee 206 (219)
T 2h92_A 152 RRYKDN-------------------------QLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEE 206 (219)
T ss_dssp HHHHHH-------------------------HHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECTTCCHHH
T ss_pred HHHHHH-------------------------HhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECCCCCHHH
Confidence 975320 0011 123455555554321 111111122332 23778887 49999
Q ss_pred HHHHHHHHHH
Q 022042 279 VFAQIDVALT 288 (303)
Q Consensus 279 v~~~I~~~l~ 288 (303)
++++|.+.+.
T Consensus 207 ~~~~I~~~l~ 216 (219)
T 2h92_A 207 VTDEILAMVS 216 (219)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988774
No 74
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.49 E-value=4.1e-13 Score=112.54 Aligned_cols=43 Identities=26% Similarity=0.482 Sum_probs=39.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHc
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA 125 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~ 125 (303)
..++|+|+|++||||||+++.|++.+|++++++|++.++....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~ 53 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE 53 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH
Confidence 4579999999999999999999999999999999999887653
No 75
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.47 E-value=2.7e-13 Score=117.15 Aligned_cols=173 Identities=18% Similarity=0.272 Sum_probs=99.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH----HcCCcch--HHHHHHH-----------------
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEI----AAGSENG--KRAKEHM----------------- 137 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~----~~~~~~~--~~i~~~~----------------- 137 (303)
...+.+|+|+|++||||||+++.|++++|+.+++.|++++... ..+.+.. ..+.+++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i 92 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLV 92 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceE
Confidence 3456799999999999999999999999999999999998743 2333321 1122221
Q ss_pred -HcCCCc----ChHHHH-------------HHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHH
Q 022042 138 -EKGQLV----PDEIVV-------------TMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPED 199 (303)
Q Consensus 138 -~~g~~~----~~~~~~-------------~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e 199 (303)
..|..+ ..+.+. ..+...+.... .++++|+||+.... ..+. ..+++|||+++++
T Consensus 93 ~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~-~~~~~v~~g~~~~~---~~l~----~~d~vi~L~a~~e 164 (236)
T 1q3t_A 93 FVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIA-QQGGIVMDGRDIGT---VVLP----QAELKIFLVASVD 164 (236)
T ss_dssp EETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHH-TTSCEEEECSSCSS---SSGG----GCSEEEEEECCHH
T ss_pred eECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhc-ccCCEEEECCcchh---hhcc----CCCEEEEEECCHH
Confidence 112211 111111 11111111111 25689999875421 0111 3579999999999
Q ss_pred HHHHHHh----cCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHH-HHHHH-HHHHHHhhc-ceEEEcC
Q 022042 200 TLVERVV----GRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKT-HHHNV-EAVLSLYED-VTVEVNG 272 (303)
Q Consensus 200 ~~~~Rl~----~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~-~~~~~-~~~~~~~~~-~~~~Id~ 272 (303)
++.+|+. .|.. ....+.+.+++.. .+... ..+...|.. ..++||+
T Consensus 165 ~~~~R~~~~~~~R~~----------------------------~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~ 216 (236)
T 1q3t_A 165 ERAERRYKENIAKGI----------------------------ETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDT 216 (236)
T ss_dssp HHHHHHHHHHHHTTC----------------------------CCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEEC
T ss_pred HHHHHHHHHHHhcCC----------------------------CCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcC
Confidence 9999973 3320 1123344444432 11100 001112222 2368898
Q ss_pred C-CCHHHHHHHHHHHHHH
Q 022042 273 S-VNKEDVFAQIDVALTN 289 (303)
Q Consensus 273 ~-~s~eev~~~I~~~l~~ 289 (303)
+ .++++++++|.+.+..
T Consensus 217 ~~~s~eev~~~I~~~l~~ 234 (236)
T 1q3t_A 217 TGLNIQEVVEKIKAEAEK 234 (236)
T ss_dssp SSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 8 5999999999988864
No 76
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.47 E-value=5.1e-14 Score=123.67 Aligned_cols=86 Identities=13% Similarity=0.118 Sum_probs=52.6
Q ss_pred CCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHH--HHHHHHHh
Q 022042 186 FQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHN--VEAVLSLY 263 (303)
Q Consensus 186 ~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~--~~~~~~~~ 263 (303)
..||++|||++|++++++|+.+|.. .++. ....+..+.+..+++.|.+. ..+.+..+
T Consensus 173 ~~pd~vi~L~~~~e~~~~Ri~~R~r------~~~~---------------~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~ 231 (263)
T 1p5z_B 173 LELDGIIYLQATPETCLHRIYLRGR------NEEQ---------------GIPLEYLEKLHYKHESWLLHRTLKTNFDYL 231 (263)
T ss_dssp HCCSEEEEEECCHHHHHHHHHHHCC------GGGT---------------TCCHHHHHHHHHHHHHHHTTCCCCCSCGGG
T ss_pred CCCCeEEEEECCHHHHHHHHHhcCC------cccc---------------CccHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence 4699999999999999999987731 1000 00111223333333333221 00111112
Q ss_pred -hcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042 264 -EDVTVEVNGSVNKEDVFAQIDVALTNLLE 292 (303)
Q Consensus 264 -~~~~~~Id~~~s~eev~~~I~~~l~~~l~ 292 (303)
...+++||++.++++|+++|.+.|.+.+.
T Consensus 232 ~~~~~~~Id~~~~~eev~~~I~~~l~~~l~ 261 (263)
T 1p5z_B 232 QEVPILTLDVNEDFKDKYESLVEKVKEFLS 261 (263)
T ss_dssp GGSCEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 23578899999999999999999987653
No 77
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.46 E-value=4.1e-12 Score=107.19 Aligned_cols=169 Identities=14% Similarity=0.129 Sum_probs=92.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcch-HHHHHHHHcCC--------------CcChHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENG-KRAKEHMEKGQ--------------LVPDEI 147 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~-~~i~~~~~~g~--------------~~~~~~ 147 (303)
+.++|.|.|++||||||+++.||+++|+++++ +++++..... .... ..+...-+... ...+..
T Consensus 5 ~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~-~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T 3fdi_A 5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKD-GRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDI 82 (201)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHh-cCCCHHHHHHHhhhchhHHHHHhccccccccccHHH
Confidence 34689999999999999999999999999999 8887653211 1010 11111100000 000111
Q ss_pred HHHHHHHHHcCCCC-CCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCC
Q 022042 148 VVTMVKERLSQPDS-QENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPE 226 (303)
Q Consensus 148 ~~~~l~~~l~~~~~-~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~ 226 (303)
.....+.+.+... ..+++|++|.. -..+ +... ...+.|||++|.+++.+|+.++.
T Consensus 83 -~~~~~~~i~~la~~~~~~~Vi~Gr~--g~~v--l~~~--~~~~~V~L~A~~e~r~~R~~~~~----------------- 138 (201)
T 3fdi_A 83 -AIRQFNFIRKKANEEKESFVIVGRC--AEEI--LSDN--PNMISAFILGDKDTKTKRVMERE----------------- 138 (201)
T ss_dssp -HHHHHHHHHHHHHTSCCCEEEESTT--HHHH--TTTC--TTEEEEEEEECHHHHHHHHHHHH-----------------
T ss_pred -HHHHHHHHHHHHhhcCCCEEEEECC--cchh--cCCC--CCeEEEEEECCHHHHHHHHHHHh-----------------
Confidence 1112222211110 13568888731 1111 1111 12489999999999999997652
Q ss_pred chHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhh--------cceEEEcCC-CCHHHHHHHHHHHHHH
Q 022042 227 TDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE--------DVTVEVNGS-VNKEDVFAQIDVALTN 289 (303)
Q Consensus 227 ~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~--------~~~~~Id~~-~s~eev~~~I~~~l~~ 289 (303)
.-..+.+.+++.........++..|. ..-++||++ .+++++++.|.+.++.
T Consensus 139 ------------~~~~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~ 198 (201)
T 3fdi_A 139 ------------GVDEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYIDS 198 (201)
T ss_dssp ------------TCCHHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHHT
T ss_pred ------------CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 01133444455544444444444431 123567765 6999999999887753
No 78
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.44 E-value=5.5e-12 Score=108.04 Aligned_cols=170 Identities=16% Similarity=0.181 Sum_probs=94.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCC----cc---hHHHHH-HHH---cC------------
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGS----EN---GKRAKE-HME---KG------------ 140 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~----~~---~~~i~~-~~~---~g------------ 140 (303)
.++|+|.|++||||||+++.|++++|+.+++ .++++....... .+ ++.... ++. .+
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSPN 92 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC-------------------------------------
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhcccccccccccccc
Confidence 5799999999999999999999999999999 666665444311 01 111000 000 00
Q ss_pred -CCcChHHHHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHH--HhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCce
Q 022042 141 -QLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALK--KYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKI 217 (303)
Q Consensus 141 -~~~~~~~~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~--~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~ 217 (303)
....++.+.....+.+.+... .+++|+.|.. -..+ +. ... ...++|||++|.+++.+|+.++..
T Consensus 93 ~~~~~~~~~f~~~~~~i~~la~-~~~~Vi~Grg--gg~v--l~~~~~~-~~~~~VfL~A~~e~r~~Ri~~~~~------- 159 (223)
T 3hdt_A 93 DKLTSPENLFKFQSEVMRELAE-SEPCIFVGRA--AGYV--LDQDEDI-ERLIRIFVYTDKVKKVQRVMEVDC------- 159 (223)
T ss_dssp -----HHHHHHHHHHHHHHHHH-HSCEEEESTT--HHHH--HHHCTTC-CEEEEEEEECCHHHHHHHHHHHHT-------
T ss_pred cccccHHHHHHHHHHHHHHHHh-CCCEEEEeCC--cchh--cccccCC-CCeEEEEEECCHHHHHHHHHHhcC-------
Confidence 000111111111122222111 2457777632 1111 21 111 125899999999999999976520
Q ss_pred ecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhh--------cceEEEcCC-CCHHHHHHHHHHHHH
Q 022042 218 YHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE--------DVTVEVNGS-VNKEDVFAQIDVALT 288 (303)
Q Consensus 218 ~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~--------~~~~~Id~~-~s~eev~~~I~~~l~ 288 (303)
-..+...+++........+++.+|- ..-++||++ .+++++++.|.+.++
T Consensus 160 ----------------------~~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~ 217 (223)
T 3hdt_A 160 ----------------------IDEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIR 217 (223)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHH
Confidence 1133445555555555555555431 234567765 699999999988876
Q ss_pred H
Q 022042 289 N 289 (303)
Q Consensus 289 ~ 289 (303)
.
T Consensus 218 ~ 218 (223)
T 3hdt_A 218 L 218 (223)
T ss_dssp H
T ss_pred H
Confidence 3
No 79
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.40 E-value=5e-12 Score=108.86 Aligned_cols=42 Identities=17% Similarity=0.331 Sum_probs=37.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEI 123 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~ 123 (303)
+++++|+|.|++||||||+++.|+++||+.+++.|.+++...
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~ 48 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIAT 48 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHH
Confidence 356799999999999999999999999999999999987753
No 80
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.39 E-value=5.2e-12 Score=103.77 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=65.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcee--ehHHHHHHHHHcC--CcchHHHHHHHHcCCCc-Ch---HH---HHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHI--AAGDLLRAEIAAG--SENGKRAKEHMEKGQLV-PD---EI---VVTMV 152 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i--~~d~l~~~~~~~~--~~~~~~i~~~~~~g~~~-~~---~~---~~~~l 152 (303)
+++|+|+|+|||||||+++.|+++++..++ +.|++........ ...+..+.+ .+... .. .. +...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 79 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDA---DGGVSIGPEFRALEGAWAEGV 79 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECT---TSCEEECHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccC---CCccccchhHHHHHHHHHHHH
Confidence 468999999999999999999999986655 5777654321110 000000000 00000 00 11 11112
Q ss_pred HHHHcCCCCCCCcEEEcCCCC-CHHHHHHH-HHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 153 KERLSQPDSQENGWLLDGYPR-SLSQATAL-KKYGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 153 ~~~l~~~~~~~~~~Vldg~p~-~~~~~~~l-~~~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
...+. .+..+|+|+... .......+ ......+..+|||++|.+++.+|+.+|.
T Consensus 80 ~~~~~----~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~ 134 (178)
T 1qhx_A 80 VAMAR----AGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARG 134 (178)
T ss_dssp HHHHH----TTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTS
T ss_pred HHHHh----cCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhC
Confidence 22222 245688888422 22211112 2222234468899999999999999885
No 81
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.37 E-value=2.3e-12 Score=109.32 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=63.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC------CceeehHHHHHHHHHcCCcchHHH-HHHHHcCCCcChHHHHHHHH
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYG------LVHIAAGDLLRAEIAAGSENGKRA-KEHMEKGQLVPDEIVVTMVK 153 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg------~~~i~~d~l~~~~~~~~~~~~~~i-~~~~~~g~~~~~~~~~~~l~ 153 (303)
...+++|+|+|++||||||+++.|++.++ +.+++.|.+ +..+.....+.... ...+ ..+...+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~-r~~l~~~~~~~~~~r~~~~--------~~~~~~~~ 92 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI-RFGLNKDLGFSEADRNENI--------RRIAEVAK 92 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH-TTTTTTTCCSSHHHHHHHH--------HHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH-hhhhccccCCCHHHHHHHH--------HHHHHHHH
Confidence 34568999999999999999999999886 667765544 22111110010000 0000 00111122
Q ss_pred HHHcCCCCCCCcEEEcCCCCC-HHHHHHHHH---------hCCCCcEEEEEEcCHHHHHHHH
Q 022042 154 ERLSQPDSQENGWLLDGYPRS-LSQATALKK---------YGFQPDLFILLEVPEDTLVERV 205 (303)
Q Consensus 154 ~~l~~~~~~~~~~Vldg~p~~-~~~~~~l~~---------~~~~pd~vI~L~~~~e~~~~Rl 205 (303)
..+.. +..+|+| |... ......+.. ....|+++|||++|++++.+|+
T Consensus 93 ~~l~~----g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 93 LFADS----NSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp HHHHT----TCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred HHHHC----CCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 22322 5667888 5432 122222332 1125799999999999999995
No 82
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.34 E-value=1.3e-11 Score=102.43 Aligned_cols=111 Identities=12% Similarity=0.095 Sum_probs=61.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHH--HHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVT--MVKE 154 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~--~l~~ 154 (303)
+++++|+|+|++||||||+++.|++.++ +.+++.|.+ +..+..+..+...-+ ...+.. .+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~r----------~~~~~~~~~~~~ 79 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA-RTTVSEGAGFTREER----------LRHLKRIAWIAR 79 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-HTTTTTTCCCCHHHH----------HHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH-HHHHhhccCCChhhH----------HHHHHHHHHHHH
Confidence 3467999999999999999999999884 245665544 322111111100000 000111 1111
Q ss_pred HHcCCCCCCCcEEEcCCCCCHHHHHHH---HHhCCCCcEEEEEEcCHHHHHHHHh
Q 022042 155 RLSQPDSQENGWLLDGYPRSLSQATAL---KKYGFQPDLFILLEVPEDTLVERVV 206 (303)
Q Consensus 155 ~l~~~~~~~~~~Vldg~p~~~~~~~~l---~~~~~~pd~vI~L~~~~e~~~~Rl~ 206 (303)
.+.. .+..+|+|++.........+ ......|+++|||++|++++.+|+.
T Consensus 80 ~~~~---~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~ 131 (186)
T 2yvu_A 80 LLAR---NGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDP 131 (186)
T ss_dssp HHHT---TTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCH
T ss_pred HHHh---CCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhh
Confidence 1111 23445667754332222222 2222358899999999999999974
No 83
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.31 E-value=2e-12 Score=111.22 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=38.5
Q ss_pred hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHh
Q 022042 184 YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY 263 (303)
Q Consensus 184 ~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~ 263 (303)
.+..||++|||++|++++++|+.+|.. . ..+ .. .....+|+..++..+ ...|
T Consensus 143 ~~~~pD~vi~Ld~~~e~~~~Ri~~R~r------~-----------------~e~-~~-~~~~~~rv~~~~~~~---~~~~ 194 (230)
T 2vp4_A 143 IHVQADLIIYLRTSPEVAYERIRQRAR------S-----------------EES-CV-PLKYLQELHELHEDW---LIHQ 194 (230)
T ss_dssp BCCCCSEEEEEECCHHHHHHHHHHHCC------G-----------------GGT-TC-CHHHHHHHHHHHHHH---HTSC
T ss_pred hcCCCCEEEEEeCCHHHHHHHHHHcCC------c-----------------ccc-cC-cHHHHHHHHHHHHHH---HHHh
Confidence 356899999999999999999987631 0 000 01 112344454444332 2222
Q ss_pred ----hcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042 264 ----EDVTVEVNGSVNKEDVFAQIDVALTNLLE 292 (303)
Q Consensus 264 ----~~~~~~Id~~~s~eev~~~I~~~l~~~l~ 292 (303)
...+++||+++++++|.++|.+.+.+++.
T Consensus 195 ~~~~~~~~~vId~~~~~eev~~~I~~~l~~~~~ 227 (230)
T 2vp4_A 195 RRPQSCKVLVLDADLNLENIGTEYQRSESSIFD 227 (230)
T ss_dssp CSSCCCEEEEEECCC------------------
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHHHHhh
Confidence 23578899999999999999999987664
No 84
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.26 E-value=3.5e-12 Score=105.17 Aligned_cols=113 Identities=13% Similarity=0.181 Sum_probs=61.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCceeehHH-HHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHH--HHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY---GLVHIAAGD-LLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMV--KER 155 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d~-l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l--~~~ 155 (303)
.++++|+|+|++||||||+++.|++.+ |++++.++. .++..+... .+.... . .+..+..+. ...
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~--~~~~~~----~----~~~~~~~~~~~~~~ 72 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKN--LGFSPE----D----REENVRRIAEVAKL 72 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTT--CCSSHH----H----HHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhc--cccccc----c----HHHHHHHHHHHHHH
Confidence 346789999999999999999999988 887775542 222211110 000000 0 011111111 111
Q ss_pred HcCCCCCCCcEEEcCCCCC----HHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcC
Q 022042 156 LSQPDSQENGWLLDGYPRS----LSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (303)
Q Consensus 156 l~~~~~~~~~~Vldg~p~~----~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R 208 (303)
+.. ...+++.++... ......+......|+.+|||++|++++.+|+.+|
T Consensus 73 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~ 125 (179)
T 2pez_A 73 FAD----AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG 125 (179)
T ss_dssp HHH----TTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred HHH----CCCEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh
Confidence 211 123455443222 1222222222336889999999999999998654
No 85
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.25 E-value=3.5e-10 Score=94.90 Aligned_cols=112 Identities=12% Similarity=0.084 Sum_probs=62.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCc--eeehHHHHHHHHHcCCcch-HHHHHHHHcCCCcChHHHHHHHHH
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKY---GLV--HIAAGDLLRAEIAAGSENG-KRAKEHMEKGQLVPDEIVVTMVKE 154 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~l---g~~--~i~~d~l~~~~~~~~~~~~-~~i~~~~~~g~~~~~~~~~~~l~~ 154 (303)
..++.+|+|+|++||||||+++.|++.+ |.. +++.+++... +..+..+. ......+ ..+... ..
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~-~~ 91 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHG-LNRDLSFKAEDRAENI--------RRVGEV-AK 91 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTT-TTTTCCSSHHHHHHHH--------HHHHHH-HH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhH-hhcccCcChHHHHHHH--------HHHHHH-HH
Confidence 3567899999999999999999999998 655 7877665321 11111010 0000000 000011 11
Q ss_pred HHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCC-CCcEEEEEEcCHHHHHHHH
Q 022042 155 RLSQPDSQENGWLLDGYPRSLSQATALKKYGF-QPDLFILLEVPEDTLVERV 205 (303)
Q Consensus 155 ~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~-~pd~vI~L~~~~e~~~~Rl 205 (303)
.+.. .+..+|.+...........+..... ...++|||+++.+++.+|+
T Consensus 92 ~~~~---~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 92 LFAD---AGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp HHHH---TTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHC
T ss_pred HHHh---CCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhc
Confidence 1111 1445565553333344444544322 2346799999999999997
No 86
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.25 E-value=8.9e-11 Score=104.38 Aligned_cols=117 Identities=17% Similarity=0.239 Sum_probs=70.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh--CCceeehHHHHHHHHHcCCcchHHHHHHHHcCC-----CcChHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY--GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ-----LVPDEIVVTMVKE 154 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l--g~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~-----~~~~~~~~~~l~~ 154 (303)
..|++|+|+|+|||||||+++.|++++ ++.+|+.|.+.... . .+...+.. +.... ..........+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~-~---~~~~~~~~-~~~~a~~~~~~~~~~~~~~~v~~ 105 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH-P---NFDELVKL-YEKDVVKHVTPYSNRMTEAIISR 105 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTS-T---THHHHHHH-HGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhc-h---hhHHHHHH-ccchhhhhhhHHHHHHHHHHHHH
Confidence 356799999999999999999999999 78889886653211 0 01011111 11000 0011112233333
Q ss_pred HHcCCCCCCCcEEEcCCCCCHHHHHHH----HHhCCCCcEEEEEEcCHHHH----HHHHhcC
Q 022042 155 RLSQPDSQENGWLLDGYPRSLSQATAL----KKYGFQPDLFILLEVPEDTL----VERVVGR 208 (303)
Q Consensus 155 ~l~~~~~~~~~~Vldg~p~~~~~~~~l----~~~~~~pd~vI~L~~~~e~~----~~Rl~~R 208 (303)
.+.. +..+|+|+......+...+ .+.+ .+..+++|.+|++++ .+|+..|
T Consensus 106 ~l~~----g~~vIld~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~~p~~~~~l~~~~Rl~~R 162 (287)
T 1gvn_B 106 LSDQ----GYNLVIEGTGRTTDVPIQTATMLQAKG-YETKMYVMAVPKINSYLGTIERYETM 162 (287)
T ss_dssp HHHH----TCCEEECCCCCCSHHHHHHHHHHHTTT-CEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred HHhc----CCeEEEECCCCCHHHHHHHHHHHHhCC-CcEEEEEEECCHHHHHHHHHHHHHHH
Confidence 3332 6779999976665433322 2223 344579999999999 7887655
No 87
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.22 E-value=1.5e-11 Score=106.40 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-CCc
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY-GLV 111 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l-g~~ 111 (303)
+|++|+|+|++||||||+++.|++++ +..
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~ 30 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWH 30 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCCCe
Confidence 46799999999999999999999999 443
No 88
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=99.18 E-value=3.5e-13 Score=114.09 Aligned_cols=177 Identities=19% Similarity=0.196 Sum_probs=89.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcc-hHHHHHHHHc--CCCcChHHHHHHH--------H
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSEN-GKRAKEHMEK--GQLVPDEIVVTMV--------K 153 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~-~~~i~~~~~~--g~~~~~~~~~~~l--------~ 153 (303)
++|+|+|++||||||+++.|++.|+...+++.. ++. ...+++. +..++..+.. +....+.....++ .
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~-~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT-LAF-PRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAV 78 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEE-EES-SEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE-Eee-cCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhH
Confidence 479999999999999999999998532222110 000 0001112 3333333321 1011111111111 0
Q ss_pred HHHcCCCCCCCcEEEcCCCCCH--HH------------HHHHHHh-----C-CCCcEEEEEEcCHHHHHHHHhcCCCCCC
Q 022042 154 ERLSQPDSQENGWLLDGYPRSL--SQ------------ATALKKY-----G-FQPDLFILLEVPEDTLVERVVGRRLDPV 213 (303)
Q Consensus 154 ~~l~~~~~~~~~~Vldg~p~~~--~~------------~~~l~~~-----~-~~pd~vI~L~~~~e~~~~Rl~~R~~~~~ 213 (303)
..+......+..+|+|+|+... .+ ...+... + ..||.+|||++|++++.+|+.+|....
T Consensus 79 ~~i~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~- 157 (214)
T 1gtv_A 79 HTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRD- 157 (214)
T ss_dssp HHHHHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHEB-
T ss_pred HHHHHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccccc-
Confidence 1111111224568889876432 11 1112221 2 269999999999999999999884210
Q ss_pred CCceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhh-cceEEEcCCCCHHHHHHHHHH
Q 022042 214 TGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE-DVTVEVNGSVNKEDVFAQIDV 285 (303)
Q Consensus 214 ~g~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~-~~~~~Id~~~s~eev~~~I~~ 285 (303)
.++.- +++ +. .+.+.+++...+. .+.+.+. ..+++||++++++++.++|..
T Consensus 158 ~~~~~-------------d~~----e~-~~~~~~~~~~~~~---~~~~~~~~~~~~vId~~~~~~~v~~~i~~ 209 (214)
T 1gtv_A 158 PGRAR-------------DNY----ER-DAELQQRTGAVYA---ELAAQGWGGRWLVVGADVDPGRLAATLAP 209 (214)
T ss_dssp BEEEE-------------EEE----EE-EHHHHHHHHHHHH---HHHHEEEEEEEEEEEEEEBHHHHHHHHC-
T ss_pred ccccc-------------ccc----cc-cHHHHHHHHHHHH---HHHHhCCCCCEEEEeCCCCHHHHHHHhcC
Confidence 00000 000 00 1233444433222 2233332 356789999999999988754
No 89
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.17 E-value=5.8e-10 Score=93.46 Aligned_cols=167 Identities=16% Similarity=0.205 Sum_probs=84.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH---HcCCc----chHHHHHHHHcCCCcC-----h---HH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEI---AAGSE----NGKRAKEHMEKGQLVP-----D---EI 147 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~---~~~~~----~~~~i~~~~~~g~~~~-----~---~~ 147 (303)
.+.+|+|+||+||||||+++.|+..+....++...+.+... ..+.. ....+......+.... . ..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGT 85 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccc
Confidence 45689999999999999999999876422222111100000 00000 0011111111111000 0 00
Q ss_pred HHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCceecccCCCCCc
Q 022042 148 VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPET 227 (303)
Q Consensus 148 ~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~ 227 (303)
....+.+.+.. +..+|+|+.+....+ +......+..++++..+.+++.+|+.+|..
T Consensus 86 ~~~~i~~~l~~----g~~vi~d~~~~~~~~---~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~----------------- 141 (205)
T 3tr0_A 86 EKDWVLRQLKA----GRDVLLEIDWQGARQ---IRELFPPALSIFILPPSIEALRERLIKRRQ----------------- 141 (205)
T ss_dssp EHHHHHHHHHT----TCEEEEECCHHHHHH---HHHHCTTCEEEEEECSCHHHHHHHHHTCTT-----------------
T ss_pred hHHHHHHHHHc----CCeEEEEECHHHHHH---HHHhCCCcEEEEEECcCHHHHHHHHHHhCC-----------------
Confidence 00122233333 456788875433322 333333343344444569999999998852
Q ss_pred hHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042 228 DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL 290 (303)
Q Consensus 228 ~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~ 290 (303)
+.++.+.+|+..+.... .++...-++|+++ +++++.+++.++|...
T Consensus 142 ------------~~~~~i~~rl~~~~~~~----~~~~~~d~vi~n~-~~~~~~~~l~~~i~~~ 187 (205)
T 3tr0_A 142 ------------DDTAIIEQRLALAREEM----AHYKEFDYLVVND-NFDQAVQNLIHIISAE 187 (205)
T ss_dssp ------------SCSSTHHHHHHHHHHHH----TTGGGCSEEEECS-SHHHHHHHHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHHHH----hcccCCCEEEECC-CHHHHHHHHHHHHHHH
Confidence 22344566666664432 2223333445555 9999999999988753
No 90
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.16 E-value=7.6e-10 Score=107.68 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=64.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---CCceeehH-HHHHHHHHcCCcchHHH-HHHHHcCCCcChHHHHHHHHHHHc
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY---GLVHIAAG-DLLRAEIAAGSENGKRA-KEHMEKGQLVPDEIVVTMVKERLS 157 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l---g~~~i~~d-~l~~~~~~~~~~~~~~i-~~~~~~g~~~~~~~~~~~l~~~l~ 157 (303)
++++|+|+|.+||||||+++.|++++ |+.++.+| +.++..+.....+.... .+.+. .+..++...+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r--------~i~eva~~~l~ 122 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVR--------RIAEVAKLFAD 122 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHH--------HHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHH--------HHHHHHHHHHh
Confidence 57899999999999999999999999 88877764 44443221111111000 00000 01111121221
Q ss_pred CCCCCCCcEEEcCCCCC----HHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhc
Q 022042 158 QPDSQENGWLLDGYPRS----LSQATALKKYGFQPDLFILLEVPEDTLVERVVG 207 (303)
Q Consensus 158 ~~~~~~~~~Vldg~p~~----~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~ 207 (303)
. +..+|.+ |... ......+......++++|||++|.+++.+|+.+
T Consensus 123 ~----G~iVI~d-~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r 171 (630)
T 1x6v_B 123 A----GLVCITS-FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK 171 (630)
T ss_dssp T----TCEEEEE-CCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTT
T ss_pred C----CCEEEEe-CchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhcc
Confidence 1 3334444 3222 223333333344578999999999999999863
No 91
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.16 E-value=2.7e-12 Score=107.94 Aligned_cols=166 Identities=23% Similarity=0.272 Sum_probs=68.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-CCceeehHHHHHHHHHcCCc--------chHHHHHHHHcCCCcChH-------
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRAEIAAGSE--------NGKRAKEHMEKGQLVPDE------- 146 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l-g~~~i~~d~l~~~~~~~~~~--------~~~~i~~~~~~g~~~~~~------- 146 (303)
.+.+|+|+|++||||||+++.|+..+ ....+..+...+... .+.. ....+......+..+...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMR-EGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYY 83 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCC-CCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeec
Confidence 45799999999999999999999876 211111111100000 0000 011122222222211100
Q ss_pred -HHHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCc-EEEEEE-cCHHHHHHHHhcCCCCCCCCceecccCC
Q 022042 147 -IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPD-LFILLE-VPEDTLVERVVGRRLDPVTGKIYHVKYS 223 (303)
Q Consensus 147 -~~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd-~vI~L~-~~~e~~~~Rl~~R~~~~~~g~~~~~~~~ 223 (303)
.....+...+.. +..+|+|+....... +... .+| +++|+. ++.+++.+|+.+|..
T Consensus 84 g~~~~~i~~~l~~----g~~vv~d~~~~~~~~---~~~~--~~~~~~i~~~~~~~~~~~~Rl~~R~~------------- 141 (207)
T 2j41_A 84 GTPVQYVKDTMDE----GHDVFLEIEVEGAKQ---VRKK--FPDALFIFLAPPSLEHLRERLVGRGT------------- 141 (207)
T ss_dssp EEEHHHHHHHHHT----TCEEEEECCGGGHHH---HHHH--CTTSEEEEEECCC--------------------------
T ss_pred CCCHHHHHHHHHc----CCeEEEEECHHHHHH---HHHh--cCCeEEEEEECCCHHHHHHHHHhcCC-------------
Confidence 001222333332 567889985443333 2222 245 344444 567899999987741
Q ss_pred CCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHHHHHH
Q 022042 224 PPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE 292 (303)
Q Consensus 224 ~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~~~l~ 292 (303)
+..+.+.+|+..+..... ++...-++|+++ ++++++++|.+.+.....
T Consensus 142 ----------------~~~~~~~~rl~~~~~~~~----~~~~~d~vI~n~-~~e~~~~~i~~~l~~~~~ 189 (207)
T 2j41_A 142 ----------------ESDEKIQSRINEARKEVE----MMNLYDYVVVND-EVELAKNRIQCIVEAEHL 189 (207)
T ss_dssp ------------------------------CGGG----GGGGCSEEEECS-SHHHHHHHHHHHHHHHHT
T ss_pred ----------------CCHHHHHHHHHHHHHHHh----ccccCCEEEECC-CHHHHHHHHHHHHHHhhc
Confidence 223345555555443221 222222446666 899999999999977543
No 92
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.15 E-value=8.4e-11 Score=102.54 Aligned_cols=119 Identities=20% Similarity=0.312 Sum_probs=70.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC--CceeehHHHHHHHHHc----CCcchHHHHHHHHcCCCcChHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYG--LVHIAAGDLLRAEIAA----GSENGKRAKEHMEKGQLVPDEIVVTMVKER 155 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg--~~~i~~d~l~~~~~~~----~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~ 155 (303)
..|++|+|+|+|||||||+++.|++.++ +.+++.|.+ +..+.. ....|..+.++.... .......++...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~-r~~~~~~~~i~~~~g~~~~~~~~~~---~~~~~~~~~~~~ 105 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF-RSQHPHYLELQQEYGKDSVEYTKDF---AGKMVESLVTKL 105 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG-GTTSTTHHHHHTTCSSTTHHHHHHH---HHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH-HHhchhHHHHHHHcCchHHHHhhHH---HHHHHHHHHHHH
Confidence 4567999999999999999999999996 456676654 221000 011121111111110 011122222322
Q ss_pred HcCCCCCCCcEEEcCCCCCHHHHHH----HHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 156 LSQPDSQENGWLLDGYPRSLSQATA----LKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 156 l~~~~~~~~~~Vldg~p~~~~~~~~----l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
+.. +.++|+|+++....+... +...+. +-.++||++|.+++.+|+.+|.
T Consensus 106 ~~~----g~~vVid~~~~~~~~~~~~~~~l~~~g~-~v~lv~l~~~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 106 SSL----GYNLLIEGTLRTVDVPKKTAQLLKNKGY-EVQLALIATKPELSYLSTLIRY 158 (253)
T ss_dssp HHT----TCCEEEECCTTSSHHHHHHHHHHHHTTC-EEEEEEECCCHHHHHHHHHHHH
T ss_pred Hhc----CCCEEEeCCCCCHHHHHHHHHHHHHCCC-cEEEEEEeCCHHHHHHHHHHHH
Confidence 322 457999998876554332 333332 3346788999999999998774
No 93
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.14 E-value=1.6e-10 Score=97.73 Aligned_cols=28 Identities=32% Similarity=0.375 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
..+.+|+|+||+||||||+++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3567899999999999999999999874
No 94
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.14 E-value=1.3e-10 Score=108.68 Aligned_cols=101 Identities=16% Similarity=0.100 Sum_probs=73.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCC
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~ 160 (303)
...+.+|+|+|+|||||||+|+.|++.+|+.+|+.|++- . .......+...+..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------~----------------~~~~~~~~~~~l~~-- 308 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG--------S----------------WQRCVSSCQAALRQ-- 308 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC--------S----------------HHHHHHHHHHHHHT--
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH--------H----------------HHHHHHHHHHHHhc--
Confidence 345679999999999999999999999999999988751 0 11122233333433
Q ss_pred CCCCcEEEcCCCCCHHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 161 SQENGWLLDGYPRSLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 161 ~~~~~~Vldg~p~~~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
+..+|+|+......+...+.+ ....+..+|||+++.+++++|+.+|.
T Consensus 309 --g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~ 358 (416)
T 3zvl_A 309 --GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFRE 358 (416)
T ss_dssp --TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHH
T ss_pred --CCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhc
Confidence 567999997666655544432 12235579999999999999999885
No 95
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.06 E-value=2.6e-10 Score=109.96 Aligned_cols=113 Identities=14% Similarity=0.148 Sum_probs=66.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC-----ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGL-----VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERL 156 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~-----~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l 156 (303)
..+++|+|+|++||||||+++.|+++++. .+++.|.+ ++.+..+..+...-+... -+.+...+...+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i-r~~l~~~~~f~~~er~~~-------l~~i~~~~~~~l 441 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV-RTHLSRGLGFSKEDRITN-------ILRVGFVASEIV 441 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH-HHHTCTTCCSSHHHHHHH-------HHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh-hhhhcccccccHHHHHHH-------HHHHHHHHHHHH
Confidence 45689999999999999999999998863 66776654 443322222211111000 001111222222
Q ss_pred cCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCc-EEEEEEcCHHHHHHHHh
Q 022042 157 SQPDSQENGWLLDGYPRSLSQATALKKYGFQPD-LFILLEVPEDTLVERVV 206 (303)
Q Consensus 157 ~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd-~vI~L~~~~e~~~~Rl~ 206 (303)
. .+.++|+|+..........+.+....++ ++|||++|.+++.+|+.
T Consensus 442 ~----~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~ 488 (546)
T 2gks_A 442 K----HNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV 488 (546)
T ss_dssp H----TTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCC
T ss_pred h----CCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhh
Confidence 2 2677899963323333333443322356 89999999999999975
No 96
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=99.06 E-value=4.6e-09 Score=87.88 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=73.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC---CceeehHHHHHHHHHc--CCcchH-------------HHHHHHHcCCCcC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLLRAEIAA--GSENGK-------------RAKEHMEKGQLVP 144 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg---~~~i~~d~l~~~~~~~--~~~~~~-------------~i~~~~~~g~~~~ 144 (303)
.+++|+|+|.+||||+|+|+.|.+.+| +..+++++.+++.... +-++.. .+..+...-....
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~d 89 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQAD 89 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhcC
Confidence 346999999999999999999998885 6789999999864332 111111 1111100000000
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHH
Q 022042 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERV 205 (303)
Q Consensus 145 ~~~~~~~l~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl 205 (303)
...+..+. +... ....||+||. |...++++|.+.+..--.+|.+.++++++.+|.
T Consensus 90 ~~~~~~~~---~~~~--~~~~vII~dv-R~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg 144 (202)
T 3ch4_B 90 PGFFCRKI---VEGI--SQPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRG 144 (202)
T ss_dssp TTTTHHHH---SBTC--CCSEEEECCC-CSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTT
T ss_pred chHHHHHH---HHhc--CCCcEEEeCC-CCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHh
Confidence 01111111 1111 2357999998 888999989875322245899999999999994
No 97
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.04 E-value=1.2e-09 Score=92.05 Aligned_cols=39 Identities=26% Similarity=0.414 Sum_probs=32.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CceeehHHHH
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYG--LVHIAAGDLL 119 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg--~~~i~~d~l~ 119 (303)
+.++.+|+|+|++||||||+++.|+..++ +.+++.|..+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~ 43 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY 43 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence 45677999999999999999999999988 8888877654
No 98
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.02 E-value=4.8e-10 Score=97.83 Aligned_cols=123 Identities=19% Similarity=0.150 Sum_probs=70.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHH-HHH--cCCcchHHHHH---HHHcC-----CCcChHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRA-EIA--AGSENGKRAKE---HMEKG-----QLVPDEIVVTMV 152 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~-~~~--~~~~~~~~i~~---~~~~g-----~~~~~~~~~~~l 152 (303)
|++|+|+|++||||||+|+.|++++|+.+++.|++... .+. ...+....... .+... .......+....
T Consensus 1 M~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 80 (253)
T 2ze6_A 1 MLLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRL 80 (253)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHH
T ss_pred CeEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHH
Confidence 35899999999999999999999999999999886421 000 00000000000 00000 012234444445
Q ss_pred HHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHh----CCCCcEEEEEEcCH-HHHHHHHhcCC
Q 022042 153 KERLSQPDSQENGWLLDGYPRSLSQATALKKY----GFQPDLFILLEVPE-DTLVERVVGRR 209 (303)
Q Consensus 153 ~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~----~~~pd~vI~L~~~~-e~~~~Rl~~R~ 209 (303)
...+ +....+..+|+++... .....+... ....-.+|||++|. +++.+|+.+|.
T Consensus 81 ~~~i-~~~~~g~~vIl~gg~~--~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~ 139 (253)
T 2ze6_A 81 IFEV-DWRKSEEGLILEGGSI--SLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRV 139 (253)
T ss_dssp HHHH-HTTTTSSEEEEEECCH--HHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHH-HHHhCCCCeEEeccHH--HHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHH
Confidence 5555 4333456778875321 222222221 11123689999997 99999999884
No 99
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.00 E-value=1.2e-09 Score=90.72 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=40.1
Q ss_pred ccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCHHHHHHHHHHHHH
Q 022042 220 VKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALT 288 (303)
Q Consensus 220 ~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~s~eev~~~I~~~l~ 288 (303)
+...||+.+.+.+||..|..++++.+++|+.....+..... ....-++|.| .++++.+++|.++|.
T Consensus 118 Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~a~~e~~~~~--~~~fD~vIvN-ddle~a~~~l~~iI~ 183 (186)
T 1ex7_A 118 LFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAE--TGAHDKVIVN-DDLDKAYKELKDFIF 183 (186)
T ss_dssp EEEECSCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHT--TTCSSEEEEC-SSHHHHHHHHHHHHT
T ss_pred EEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcc--ccCCcEEEEC-cCHHHHHHHHHHHHH
Confidence 44455565666666666667788999999988766543211 1111123333 478888888877763
No 100
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.94 E-value=1.8e-10 Score=102.55 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLR 120 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~~ 120 (303)
++++|+|+|++||||||+|+.|++.+| +.+|++|++.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 567899999999999999999999887 78899988774
No 101
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.93 E-value=1.3e-08 Score=84.32 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
.+|+|+||+||||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4789999999999999999998653
No 102
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.90 E-value=1.4e-08 Score=86.87 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=17.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH-HHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIK-EKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La-~~l 108 (303)
.+.+|+|+||+||||||+++.|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45689999999999999999999 765
No 103
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.89 E-value=9.8e-09 Score=92.69 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=26.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGL 110 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~ 110 (303)
..++++|+|+|+.||||||+++.|+++++.
T Consensus 4 ~~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 4 MVTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 345689999999999999999999999853
No 104
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.86 E-value=3.2e-09 Score=101.84 Aligned_cols=119 Identities=13% Similarity=0.192 Sum_probs=67.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCC-----ceeehHHHHHHHHHcCCcchHHHHHHHHcCCC----cChHHHHHHH-
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGL-----VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL----VPDEIVVTMV- 152 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~-----~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~----~~~~~~~~~l- 152 (303)
.+.+|+++|.|||||||+|+.|++.+++ .+++.|++.+... ...... +++..... .........+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~-~~~~~~----~~f~~~~~~~~~~re~~~~~~l~ 108 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAV-KQYSSY----NFFRPDNEEAMKVRKQCALAALR 108 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHH-SCCCCG----GGGCTTCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhc-cCCccc----cccCcccHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999843 3478888665543 221111 01110000 0001111111
Q ss_pred --HHHHcCCCCCCCcEEEcCCCCCHHHHHHHHH----hCCCCcEEEEEEcC-HHHHHHHHhcCC
Q 022042 153 --KERLSQPDSQENGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVP-EDTLVERVVGRR 209 (303)
Q Consensus 153 --~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~----~~~~pd~vI~L~~~-~e~~~~Rl~~R~ 209 (303)
...+.. ..+..+|+|+..........+.+ .+. ..++|++.|+ ++++.+|+.+|.
T Consensus 109 ~~~~~L~~--~~g~~VIvDat~~~~~~R~~~~~~a~~~g~-~v~~l~~~~~d~e~i~~ri~~r~ 169 (520)
T 2axn_A 109 DVKSYLAK--EGGQIAVFDATNTTRERRHMILHFAKENDF-KAFFIESVCDDPTVVASNIMEVK 169 (520)
T ss_dssp HHHHHHHH--SCCCEEEEESCCCSHHHHHHHHHHHHHHTC-EEEEEEEECCCHHHHHHHHHHHT
T ss_pred HHHHHHHh--cCCceEEecCCCCCHHHHHHHHHHHHHcCC-eEEEEEEeCChHHHHHHHHHhhh
Confidence 112211 12567999997766655544432 232 3356677777 778888886664
No 105
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.85 E-value=3.4e-09 Score=102.69 Aligned_cols=111 Identities=9% Similarity=0.101 Sum_probs=60.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC----C--ceeehHHHHHHHHHcCCcchHHHHH-HHHcCCCcChHHHHHHHH
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYG----L--VHIAAGDLLRAEIAAGSENGKRAKE-HMEKGQLVPDEIVVTMVK 153 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg----~--~~i~~d~l~~~~~~~~~~~~~~i~~-~~~~g~~~~~~~~~~~l~ 153 (303)
..++++|+|+|++||||||+|+.|+++++ . .+++.|. ++..+..+..+...-+. .+ ..+..++.
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~-ir~~l~~~~~f~~~er~~~i--------~ri~~v~~ 463 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT-VRHELSSELGFTREDRHTNI--------QRIAFVAT 463 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH-HHHHTCTTCCCSHHHHHHHH--------HHHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH-HHHHhccccCCChhHHHHHH--------HHHHHHHH
Confidence 34568999999999999999999999986 3 4555554 44332211111110000 00 00111222
Q ss_pred HHHcCCCCCCCcEEEcCCCCCH---HHHHHHHHhCCCCcEEEEEEcCHHHHHHHH
Q 022042 154 ERLSQPDSQENGWLLDGYPRSL---SQATALKKYGFQPDLFILLEVPEDTLVERV 205 (303)
Q Consensus 154 ~~l~~~~~~~~~~Vldg~p~~~---~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl 205 (303)
..+.. +..+|.+...... .....+.... .++++|||++|.+++.+|.
T Consensus 464 ~~~~~----g~~VI~~~is~~~~~R~~~r~l~~~~-g~~~~V~Lda~~ev~~~R~ 513 (573)
T 1m8p_A 464 ELTRA----GAAVIAAPIAPYEESRKFARDAVSQA-GSFFLVHVATPLEHCEQSD 513 (573)
T ss_dssp HHHHT----TCEEEEECCCCCHHHHHHHHHHHHTT-SEEEEEEECCCHHHHHHHC
T ss_pred HHHhC----CCEEEEEcCCCcHHHHHHHHHHHHhc-CCeEEEEEeCCHHHHHHHh
Confidence 22222 4445665432112 2222222211 1468999999999999995
No 106
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.81 E-value=3.6e-08 Score=81.51 Aligned_cols=115 Identities=17% Similarity=0.112 Sum_probs=63.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC-ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGL-VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE 163 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~-~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~ 163 (303)
.+|+|+|++||||||+++.|++.++. .+++.+++.... ..+. ..... .........+.+..........+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~-~~~~-~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMV-VGGY-RPPWE-------SDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTC-CTTC-CCGGG-------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhh-cccc-ccCcc-------chhHHHHHHHHHHHHHHHHHhcC
Confidence 47899999999999999999998765 778877664321 0000 00000 00000111111111111100113
Q ss_pred CcEEEcCCCCCHHHHHHHHHh----CCC-CcEEEEEEcCHHHHHHHHhcCC
Q 022042 164 NGWLLDGYPRSLSQATALKKY----GFQ-PDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 164 ~~~Vldg~p~~~~~~~~l~~~----~~~-pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
..+|+|++- .......+.+. +.. .-.+++|+++.+++.+|+..|.
T Consensus 74 ~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~ 123 (189)
T 2bdt_A 74 NDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK 123 (189)
T ss_dssp CEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred CcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcc
Confidence 468899852 33322222222 322 3357899999999999998875
No 107
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.80 E-value=1.8e-08 Score=84.52 Aligned_cols=117 Identities=18% Similarity=0.152 Sum_probs=53.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCc--eeehHHHHHHHH---HcCCcchHHHHHHHHcCCCcChHHHHHHH
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKY---GLV--HIAAGDLLRAEI---AAGSENGKRAKEHMEKGQLVPDEIVVTMV 152 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~l---g~~--~i~~d~l~~~~~---~~~~~~~~~i~~~~~~g~~~~~~~~~~~l 152 (303)
...+.+|+|+|++||||||+++.|+..+ +.. +++.|.+..... ..+...+. .++. + .+....+...+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~---~~~~-~-~~d~~~l~~~v 93 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWF---EYYY-L-QWDVEWLTHQL 93 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHH---HHHH-T-SSCHHHHHHHT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCcc---CCCc-c-ccCHHHHHHHH
Confidence 3456899999999999999999999876 433 344554432211 11111111 1111 1 11112221221
Q ss_pred HHHHcC---------------------CCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcC
Q 022042 153 KERLSQ---------------------PDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (303)
Q Consensus 153 ~~~l~~---------------------~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R 208 (303)
...+.. ....+..+|+||.-.... .+. ..+|.+|||++|.+++++|+.+|
T Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~---~~~d~~i~v~~~~~~~~~R~~~R 164 (201)
T 1rz3_A 94 FRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRK---EWR---PFFDFVVYLDCPREIRFARENDQ 164 (201)
T ss_dssp GGGTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTST---TTG---GGCSEEEEECCC-----------
T ss_pred HHHHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccH---HHH---hhcCEEEEEeCCHHHHHHHHhcC
Confidence 111100 011245688888321100 011 13689999999999999999887
No 108
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.77 E-value=1.4e-08 Score=87.95 Aligned_cols=30 Identities=47% Similarity=0.647 Sum_probs=26.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
..+.+|+|+|+.||||||+++.|+..+|..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 456799999999999999999999988865
No 109
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.77 E-value=1.9e-08 Score=83.22 Aligned_cols=120 Identities=21% Similarity=0.297 Sum_probs=63.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCC--ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcC
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGL--VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQ 158 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~--~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~ 158 (303)
-.++.+|+|+|++||||||+++.|+..++. .+++.+++.... ..+...+-..+ ... +...+.+.+......
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~~~~~~~-~~~-----~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRIDPWLPQ-SHQ-----QNRMIMQIAADVAGR 78 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCCCTTSSS-HHH-----HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hcccccCCccc-hhh-----hhHHHHHHHHHHHHH
Confidence 345679999999999999999999987644 467777664321 11100000000 000 011111111111000
Q ss_pred CCCCCCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 159 PDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 159 ~~~~~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
....+..+++|++.... ....+.... .+-.++++.++.+++++|+..|.
T Consensus 79 ~~~~~~~~~~~~~~~~~-~l~~~~~~~-~~~~~ls~~~~~~v~~~R~~~r~ 127 (191)
T 1zp6_A 79 YAKEGYFVILDGVVRPD-WLPAFTALA-RPLHYIVLRTTAAEAIERCLDRG 127 (191)
T ss_dssp HHHTSCEEEECSCCCTT-TTHHHHTTC-SCEEEEEEECCHHHHHHHHHTTC
T ss_pred HhccCCeEEEeccCcHH-HHHHHHhcC-CCeEEEEecCCHHHHHHHHHhcC
Confidence 01113457788754321 122232212 23357999999999999999884
No 110
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=98.69 E-value=1.3e-07 Score=83.76 Aligned_cols=105 Identities=12% Similarity=0.070 Sum_probs=64.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC---CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQ 158 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg---~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~ 158 (303)
..+++|+|.|..||||+|++++|.+.++ +.++.+. .+.+..+. . ..+......
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~----------~Pt~eE~~------~--------~yl~R~~~~ 139 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALT----------KPTETERG------Q--------WYFQRYVAT 139 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECC----------SCCHHHHT------S--------CTTHHHHTT
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeC----------CcChHHHh------c--------hHHHHHHHh
Confidence 5689999999999999999999999985 3333221 11121111 0 011223333
Q ss_pred CCCCCCcEEEcCCC------------CCH-------HHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCC
Q 022042 159 PDSQENGWLLDGYP------------RSL-------SQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRL 210 (303)
Q Consensus 159 ~~~~~~~~Vldg~p------------~~~-------~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~ 210 (303)
....|..+|.|.+- ... .++..|+. ....|++.+||+++.++..+|+.+|..
T Consensus 140 LP~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~ 213 (304)
T 3czq_A 140 FPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRH 213 (304)
T ss_dssp CCCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhc
Confidence 43446667777421 111 12222211 123799999999999999999987753
No 111
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=98.62 E-value=4.5e-07 Score=82.81 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=23.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
..++++|+|+|+.||||||+++.|++.++
T Consensus 46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 46 MPTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45668999999999999999999999874
No 112
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.60 E-value=3e-08 Score=89.36 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=33.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l 118 (303)
.++++|+|+||+|||||||+..||+++|..+||+|.+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 3456899999999999999999999999999998876
No 113
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=98.59 E-value=2.6e-07 Score=83.51 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCCCCHHHHH-HHHHHHhCC
Q 022042 82 VEPLKIMISGAPASGKGTQC-ELIKEKYGL 110 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla-~~La~~lg~ 110 (303)
.++++|+|.|+.||||||++ +.|++.++.
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~ 39 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAIT 39 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 34579999999999999999 999998864
No 114
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.57 E-value=1.2e-06 Score=75.49 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=36.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA 124 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~ 124 (303)
|++|+|+|++||||||+++.|.+++|++++.+++.+++.+.
T Consensus 1 m~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~ 41 (241)
T 1dek_A 1 MKLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA 41 (241)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence 46899999999999999999999899999999887776554
No 115
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.54 E-value=8.5e-08 Score=92.37 Aligned_cols=38 Identities=11% Similarity=0.230 Sum_probs=31.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC------CceeehHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYG------LVHIAAGDLL 119 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg------~~~i~~d~l~ 119 (303)
.++.+|+|+|++||||||+++.|+..++ +.+++.|++.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 4678999999999999999999999884 3357766654
No 116
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.54 E-value=1.2e-07 Score=84.79 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CceeehHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYG-------LVHIAAGDL 118 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg-------~~~i~~d~l 118 (303)
.++.+|+|+|++||||||+++.|+..++ +.++++|..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 5668999999999999999999999876 456666654
No 117
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.53 E-value=1.2e-05 Score=68.27 Aligned_cols=30 Identities=10% Similarity=0.152 Sum_probs=24.5
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 80 ATVEPLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 80 ~~~~~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
..+.+.+++|+||+||||||+.+.|+..+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 345667999999999999999999998764
No 118
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=98.53 E-value=1e-06 Score=79.32 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
.++++|+|+|+.||||||+++.|++.++
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3467999999999999999999999874
No 119
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.50 E-value=3.8e-07 Score=81.98 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=31.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CceeehHHH
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYG-------LVHIAAGDL 118 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg-------~~~i~~d~l 118 (303)
..+|.+|+|+|++||||||+++.|+..++ ...++.|..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 34678999999999999999999998875 345777654
No 120
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.47 E-value=1.2e-06 Score=71.91 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
+.+|+|+||+||||||+++.|+..+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45899999999999999999998764
No 121
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.44 E-value=3.2e-07 Score=77.20 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDL 118 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l 118 (303)
..+.+|+|.|++||||||+++.|+..+. ..+++.|..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 4567999999999999999999999874 456666543
No 122
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.42 E-value=1.1e-06 Score=83.32 Aligned_cols=170 Identities=12% Similarity=0.097 Sum_probs=97.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC---CceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHc
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLS 157 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg---~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~ 157 (303)
...+++|+|.|..||||+|+.++|.+.++ +.++.+. .+..... +. ..+.....
T Consensus 297 ~~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~----------~Pt~~E~------~~--------~yl~R~~~ 352 (500)
T 3czp_A 297 RQHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIA----------APTEEER------AQ--------PYLWRFWR 352 (500)
T ss_dssp GGCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECC----------SCCHHHH------TS--------CTTHHHHT
T ss_pred CCCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeC----------CCChhhh------cc--------hHHHHHHH
Confidence 35788999999999999999999999884 4444321 1111111 10 11133444
Q ss_pred CCCCCCCcEEEcCC--CC----------CHH-------HHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 022042 158 QPDSQENGWLLDGY--PR----------SLS-------QATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTG 215 (303)
Q Consensus 158 ~~~~~~~~~Vldg~--p~----------~~~-------~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g 215 (303)
.....|..+|.|.+ .+ ... ++..|+. ....+++.+||+++.++..+|+.+|..++.+.
T Consensus 353 ~lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~ 432 (500)
T 3czp_A 353 HIPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKR 432 (500)
T ss_dssp TCCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCTT
T ss_pred hCCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCccc
Confidence 45555666777752 11 111 2222221 23358899999999999999999886544321
Q ss_pred ceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhh---cceEEEcCCC---CHHHHHHHHHHHHHH
Q 022042 216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE---DVTVEVNGSV---NKEDVFAQIDVALTN 289 (303)
Q Consensus 216 ~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~~---~~~~~Id~~~---s~eev~~~I~~~l~~ 289 (303)
-- ++| .|.. -.+++..|...++..+..-. ..+++|+++. ....|.+.|.+.|..
T Consensus 433 Wk----~s~--------------~D~~--~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~dk~~arl~v~~~i~~~l~~ 492 (500)
T 3czp_A 433 YK----ITE--------------EDWR--NRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIEA 492 (500)
T ss_dssp SC----CCS--------------STTT--GGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CC----CCH--------------HHHH--HHHhHHHHHHHHHHHHHHhccCCCCEEEEECCCccchHHHHHHHHHHHHHH
Confidence 00 000 0100 11223444444444333322 2578899886 457777888888887
Q ss_pred HHHhh
Q 022042 290 LLEQR 294 (303)
Q Consensus 290 ~l~~~ 294 (303)
.+.+.
T Consensus 493 ~l~~~ 497 (500)
T 3czp_A 493 AYKKD 497 (500)
T ss_dssp HHHHC
T ss_pred HHhcc
Confidence 77553
No 123
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.41 E-value=2.3e-06 Score=71.36 Aligned_cols=69 Identities=22% Similarity=0.325 Sum_probs=42.4
Q ss_pred CCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHh-hcceEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 022042 222 YSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY-EDVTVEVNGSVNKEDVFAQIDVALTNLLEQ 293 (303)
Q Consensus 222 ~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~-~~~~~~Id~~~s~eev~~~I~~~l~~~l~~ 293 (303)
..+|+...+.+++..+..+.++.+++++........ +. ++ ...-++|.++ ++++.++++.+++......
T Consensus 122 l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~-~a-~~~~~~D~iivnd-~le~a~~~l~~ii~~~~~~ 191 (198)
T 1lvg_A 122 VQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDME-SS-KEPGLFDLVIIND-DLDKAYATLKQALSEEIKK 191 (198)
T ss_dssp EECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTT-GG-GSTTTCSEEEECS-SHHHHHHHHHHHTHHHHHH
T ss_pred EeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-Hh-hccCCceEEEECC-CHHHHHHHHHHHHHHHhhh
Confidence 445555566666666666778888888877655421 11 01 1112233343 7999999999999776543
No 124
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.38 E-value=2.7e-06 Score=80.67 Aligned_cols=170 Identities=15% Similarity=0.043 Sum_probs=89.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCC---ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHc
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGL---VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLS 157 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~---~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~ 157 (303)
...+++|+|.|..||||+|+++.|.+.++- .++.+. .+..... +.. .+.....
T Consensus 40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~----------~Pt~~E~------~~~--------yl~R~~~ 95 (500)
T 3czp_A 40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFL----------RPSDEEL------ERP--------PQWRFWR 95 (500)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECS----------SCCHHHH------TSC--------TTHHHHH
T ss_pred CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeC----------CCChhhc------cCC--------hhhhHHH
Confidence 356889999999999999999999999853 333221 0111100 000 0111222
Q ss_pred CCCCCCCcEEEcCC-----------C-CC-------HHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 022042 158 QPDSQENGWLLDGY-----------P-RS-------LSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTG 215 (303)
Q Consensus 158 ~~~~~~~~~Vldg~-----------p-~~-------~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g 215 (303)
.....|..+|.|++ . .. ..++..|+. ....+++.+||+++.++..+|+.+|..++.+.
T Consensus 96 ~lP~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p~k~ 175 (500)
T 3czp_A 96 RLPPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDPQHS 175 (500)
T ss_dssp HCCCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC----------
T ss_pred hCCCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCCccc
Confidence 23333555666641 0 11 122222222 34568899999999999999999986544220
Q ss_pred ceecccCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHh---hcceEEEcCCC---CHHHHHHHHHHHHHH
Q 022042 216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY---EDVTVEVNGSV---NKEDVFAQIDVALTN 289 (303)
Q Consensus 216 ~~~~~~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~~~---~~~~~~Id~~~---s~eev~~~I~~~l~~ 289 (303)
=- + ...|.. -.+++..|...++..+..- ...+++|+++. ....+.+.|.+.|..
T Consensus 176 Wk----~--------------s~~D~~--~~~~~~~Y~~a~e~~l~~T~t~~APW~vI~a~dk~~arl~v~~~il~~l~~ 235 (500)
T 3czp_A 176 WK----L--------------SPLDWK--QSEVYDRFVHYGERVLRRTSRDYAPWYVVEGADERYRALTVGRILLEGLQA 235 (500)
T ss_dssp ---------------------CSSCTT--SHHHHHHHHHHHHHHHHHHCBTTBCEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred CC----C--------------CHHHHH--HHHhHHHHHHHHHHHHHhhcCCCCCEEEEECCCcchhHHHHHHHHHHHHHH
Confidence 00 0 001111 1123444444444444322 12578899986 457788888888888
Q ss_pred HHHhh
Q 022042 290 LLEQR 294 (303)
Q Consensus 290 ~l~~~ 294 (303)
.+...
T Consensus 236 ~l~~~ 240 (500)
T 3czp_A 236 ALATK 240 (500)
T ss_dssp HHHC-
T ss_pred HHHhc
Confidence 77643
No 125
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.36 E-value=1e-06 Score=83.37 Aligned_cols=119 Identities=14% Similarity=0.178 Sum_probs=64.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC-----CceeehHHHHHHHHHcCCcchHHHHHHHHcCCC----cChHHHHHHH-
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL----VPDEIVVTMV- 152 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg-----~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~----~~~~~~~~~l- 152 (303)
.+++|+++|.|||||||+++.|++.++ ...++.+++.+.. ....... +++..... .........+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~-~g~~~~~----~ifd~~g~~~~r~re~~~~~~l~ 112 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDM-VKTYKSF----EFFLPDNEEGLKIRKQCALAALN 112 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH-HCSCCCG----GGGCTTCHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhh-ccCCCcc----cccCCCCHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999874 3456677755443 2210000 01111100 0001111111
Q ss_pred --HHHHcCCCCCCCcEEEcCCCCCHHHHHHHHHhCC-CCcEEEEEE---cCHHHHHHHHhcC
Q 022042 153 --KERLSQPDSQENGWLLDGYPRSLSQATALKKYGF-QPDLFILLE---VPEDTLVERVVGR 208 (303)
Q Consensus 153 --~~~l~~~~~~~~~~Vldg~p~~~~~~~~l~~~~~-~pd~vI~L~---~~~e~~~~Rl~~R 208 (303)
...+.. ..+..+|+|.........+.|.+... ....++||+ .+++.+.+|+..+
T Consensus 113 ~~~~~l~~--~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~ 172 (469)
T 1bif_A 113 DVRKFLSE--EGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQV 172 (469)
T ss_dssp HHHHHHHT--TCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHh
Confidence 222322 22567999987666655555432110 012466777 5578888888654
No 126
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.22 E-value=5.2e-06 Score=69.26 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
++.+|+|+||+|||||||++.|.+.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999998875
No 127
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.07 E-value=3.4e-05 Score=62.63 Aligned_cols=111 Identities=18% Similarity=0.197 Sum_probs=59.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~ 162 (303)
.+.+++|.|++||||||+++.+. .|...++.|.+ +..+..... ...+... ..+.........+..
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~~-~g~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~---- 72 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDFC-RGLMSDDEN-DQTVTGA-------AFDVLHYIVSKRLQL---- 72 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHHH-HHHHCSSTT-CGGGHHH-------HHHHHHHHHHHHHHT----
T ss_pred CCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHHH-HHHhcCccc-chhhHHH-------HHHHHHHHHHHHHhC----
Confidence 45689999999999999999864 25566665543 332222110 0000000 001111112222222
Q ss_pred CCcEEEcCCCCCH---HHHHHHHH-hCCCCcEEEEEEcCHHHHHHHHhcCC
Q 022042 163 ENGWLLDGYPRSL---SQATALKK-YGFQPDLFILLEVPEDTLVERVVGRR 209 (303)
Q Consensus 163 ~~~~Vldg~p~~~---~~~~~l~~-~~~~pd~vI~L~~~~e~~~~Rl~~R~ 209 (303)
+...++|...... .|...+.. ....| .+++||-|...+-.|...|.
T Consensus 73 g~~~~~~~~~~~s~g~~qrv~iAral~~~p-~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 73 GKLTVVDATNVQESARKPLIEMAKDYHCFP-VAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp TCCEEEESCCCSHHHHHHHHHHHHHTTCEE-EEEEECCCHHHHHHHHHTCS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHHcCCcE-EEEEEeCCHHHHHHHHhccc
Confidence 3456677643322 22222333 33344 68899999999999988774
No 128
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.02 E-value=2.2e-06 Score=76.89 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=31.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l 118 (303)
++|+|+||+||||||++..|++++|..+|++|.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 5899999999999999999999999999998765
No 129
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=98.00 E-value=0.00014 Score=63.55 Aligned_cols=150 Identities=11% Similarity=0.065 Sum_probs=85.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCC---ceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGL---VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP 159 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~---~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~ 159 (303)
.+.+|+|.|..||||+++.++|.+.++- .++.+. .+...+.....+.......
T Consensus 74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~------------------------~Pt~eE~~~~ylwR~~~~l 129 (289)
T 3rhf_A 74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFK------------------------APTDEEKSHDFLWRIEKQV 129 (289)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECC------------------------SCCHHHHTSCTTHHHHTTC
T ss_pred CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECC------------------------CCChhhhcCCHHHHHHHhC
Confidence 5789999999999999999999999853 333221 0011111111223344455
Q ss_pred CCCCCcEEEcC--CCC----------C-------HHHHHHHHH---hCCCCcEEEEEEcCHHHHHHHHhcCCCCCCCCce
Q 022042 160 DSQENGWLLDG--YPR----------S-------LSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKI 217 (303)
Q Consensus 160 ~~~~~~~Vldg--~p~----------~-------~~~~~~l~~---~~~~pd~vI~L~~~~e~~~~Rl~~R~~~~~~g~~ 217 (303)
...|...|+|+ |.+ + ..++..|++ ......+-+||+++.++..+|+.+|..++.+
T Consensus 130 P~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k--- 206 (289)
T 3rhf_A 130 PAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSK--- 206 (289)
T ss_dssp CCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGG---
T ss_pred CCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCcc---
Confidence 55566677774 111 1 122222333 2233456789999999999999988644321
Q ss_pred ecccCCCCCchHHHhhhccCCCCcHHHH--HHHHHHHHHHHHHHHHHhh---cceEEEcCCCCHHH
Q 022042 218 YHVKYSPPETDEIAARLTKRFDDTEEKV--KLRLKTHHHNVEAVLSLYE---DVTVEVNGSVNKED 278 (303)
Q Consensus 218 ~~~~~~~p~~~~i~~rL~~r~~d~~e~~--~~r~~~~~~~~~~~~~~~~---~~~~~Id~~~s~ee 278 (303)
+..-++..+ .+++..|...++..+..-. ..+++|+++.-.-.
T Consensus 207 -------------------~WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~a 253 (289)
T 3rhf_A 207 -------------------HWKYSRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYA 253 (289)
T ss_dssp -------------------GGGCCHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHH
T ss_pred -------------------cccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHH
Confidence 111112222 2235666665555554432 26888998754333
No 130
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.98 E-value=3.7e-06 Score=75.89 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=31.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l 118 (303)
++|+|+||+||||||+|..|++.++..+|++|++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 5899999999999999999999999999998876
No 131
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.94 E-value=5.1e-06 Score=73.89 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD 117 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~ 117 (303)
..+.+|+|+||+||||||++..|+++++..+|+.|.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 345789999999999999999999999988888764
No 132
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.94 E-value=3.8e-06 Score=74.88 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=32.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l 118 (303)
++++|+|+||+||||||++..|+++++..+|+.|.+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 456899999999999999999999999888887754
No 133
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.87 E-value=0.00036 Score=58.80 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=41.6
Q ss_pred cCCCCCchHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHH-HhhcceEEEcCCCCHHHHHHHHHHHHHHH
Q 022042 221 KYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLS-LYEDVTVEVNGSVNKEDVFAQIDVALTNL 290 (303)
Q Consensus 221 ~~~~p~~~~i~~rL~~r~~d~~e~~~~r~~~~~~~~~~~~~-~~~~~~~~Id~~~s~eev~~~I~~~l~~~ 290 (303)
...+|+...+.+++..+..+.++.+.+++........ +.. .+.+.+ +.+ .+.++.++.+.+++...
T Consensus 142 ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~-~~h~~~~d~i--iv~-~~~~ea~~~~~~ii~~~ 208 (218)
T 1z6g_A 142 FIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELH-EANLLNFNLS--IIN-DDLTLTYQQLKNYLLNS 208 (218)
T ss_dssp EEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH-HHTTSCCSEE--EEC-SSHHHHHHHHHHHHHHH
T ss_pred EEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-hhcccCCCEE--EEC-CCHHHHHHHHHHHHHHH
Confidence 3445666666777777767778888888887765544 211 111222 222 37889999888888764
No 134
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=97.77 E-value=0.00024 Score=62.89 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=19.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
.+..|+|+|| ||+|+.+.|.+.+.
T Consensus 104 ~~r~ivl~GP---gK~tl~~~L~~~~~ 127 (295)
T 1kjw_A 104 YARPIIILGP---TKDRANDDLLSEFP 127 (295)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCT
T ss_pred CCCEEEEECC---CHHHHHHHHHhhCc
Confidence 4467889998 89999999998763
No 135
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.62 E-value=3.3e-05 Score=68.36 Aligned_cols=36 Identities=44% Similarity=0.692 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcee--ehHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHI--AAGDL 118 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i--~~d~l 118 (303)
.|..++|.||||+|||++|+.|++.+|..++ +..++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l 72 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL 72 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHh
Confidence 4567889999999999999999999986554 44444
No 136
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.61 E-value=2.9e-05 Score=71.52 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=30.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGD 117 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~ 117 (303)
++|+|+||+||||||++..|+++++..+|++|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 578999999999999999999999988888775
No 137
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.55 E-value=3.8e-05 Score=73.11 Aligned_cols=36 Identities=3% Similarity=0.040 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC-------ceeehHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYGL-------VHIAAGD 117 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg~-------~~i~~d~ 117 (303)
+.+++|+|+|.+||||||+++.|+++|+. .+++.|+
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 45689999999999999999999999986 4666554
No 138
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.46 E-value=0.00016 Score=58.86 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh----C--CceeehHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY----G--LVHIAAGDLLRA 121 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l----g--~~~i~~d~l~~~ 121 (303)
.+..++|.|++|+||||+++.|+..+ | +.+++..+++..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~ 81 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR 81 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 35689999999999999999998876 4 356777766654
No 139
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.41 E-value=0.00011 Score=65.11 Aligned_cols=39 Identities=26% Similarity=0.275 Sum_probs=31.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------Ccee-ehHHHH
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYG-------LVHI-AAGDLL 119 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg-------~~~i-~~d~l~ 119 (303)
..++.+|+|.|++||||||+++.|+..++ ...+ +.|+++
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 34678999999999999999999999874 3445 777654
No 140
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.40 E-value=0.00011 Score=63.25 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
+.-|+|.|+||+||||+++.|+..++.+++.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 34588999999999999999999998666543
No 141
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.40 E-value=0.00011 Score=63.14 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~ 114 (303)
+.-|+|.|+||+|||++|+.|++.++..++.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4468899999999999999999999876654
No 142
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.40 E-value=8.9e-05 Score=60.69 Aligned_cols=26 Identities=42% Similarity=0.686 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGL 110 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~ 110 (303)
++++|+|++||||||+.+.|+..+++
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999998864
No 143
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.39 E-value=9e-05 Score=61.63 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD 117 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~ 117 (303)
.+..|+|+|++|+||||+|..|+++.+ .+|+.|.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 456899999999999999999999866 7777664
No 144
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.00011 Score=68.53 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
.|.-|++.||||+|||++|+.+|.++|..++.+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 356799999999999999999999999877654
No 145
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.00012 Score=68.09 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
|.=|++.||||+|||++|+.+|..+|..++.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 44599999999999999999999999877654
No 146
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.34 E-value=0.00096 Score=66.32 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=19.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
+..|+|+|| ||+|+.+.|.+.+.
T Consensus 531 ~r~vvl~GP---~K~tl~~~L~~~~~ 553 (721)
T 2xkx_A 531 ARPIIILGP---TKDRANDDLLSEFP 553 (721)
T ss_pred CCEEEEECC---CHHHHHHHHHHhCc
Confidence 467889999 49999999998773
No 147
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.00015 Score=67.61 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
|.=|++.||||+|||++|+.||..+|..++.+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 46799999999999999999999999877654
No 148
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.33 E-value=4.4e-05 Score=69.15 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=26.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCce
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVH 112 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~ 112 (303)
.+.|+|.|++||||||+++.|++.+++.+
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 35799999999999999999999998776
No 149
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.33 E-value=0.00014 Score=64.49 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceee--hHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA--AGDLLR 120 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~--~d~l~~ 120 (303)
.+..|+|.|+||+||||+|+.|+..++..++. ..++..
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 34578999999999999999999999876654 445543
No 150
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.00015 Score=66.87 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
|.=|++.||||+|||.+|+.+|.++|..++.+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 45699999999999999999999999877654
No 151
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.29 E-value=0.00018 Score=62.84 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~ 114 (303)
.+.-++|.|+||+||||+++.|++.++..++.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 34568999999999999999999999876654
No 152
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.29 E-value=0.00021 Score=62.15 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=29.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
...+..++|.|+||+|||++|+.|++.++.+++.+
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 34456899999999999999999999998876644
No 153
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.28 E-value=0.00014 Score=59.67 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCce
Q 022042 87 IMISGAPASGKGTQCELIKEKYGLVH 112 (303)
Q Consensus 87 I~I~G~pGSGKSTla~~La~~lg~~~ 112 (303)
|+|+|++||||||+|+.|+.. |.+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~ 26 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQV 26 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSE
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCe
Confidence 789999999999999999987 6543
No 154
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.28 E-value=0.00019 Score=63.14 Aligned_cols=31 Identities=13% Similarity=0.313 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~ 114 (303)
+..|+|.|+||+||||+|+.|++.++..++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 4578999999999999999999999876654
No 155
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.27 E-value=0.00015 Score=63.45 Aligned_cols=28 Identities=25% Similarity=0.566 Sum_probs=24.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042 87 IMISGAPASGKGTQCELIKEKYGLVHIA 114 (303)
Q Consensus 87 I~I~G~pGSGKSTla~~La~~lg~~~i~ 114 (303)
++|.|||||||||+++.|+..++...+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~ 74 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFIS 74 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEE
Confidence 8899999999999999999998765443
No 156
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.23 E-value=0.00021 Score=58.00 Aligned_cols=26 Identities=23% Similarity=0.022 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+++|+|+|++||||||++..|+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999999875
No 157
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.22 E-value=0.0002 Score=65.15 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
+..|+|.||||+|||++|+.|++.++.+++.+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence 34688999999999999999999998777654
No 158
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.21 E-value=0.00018 Score=67.19 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=28.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAG 116 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d 116 (303)
+..|+|.||||+||||+|+.|++.++..++.++
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 456889999999999999999999998776654
No 159
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.00021 Score=66.84 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
.|.=|+|.||||+|||++|+.||.+++..++.+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 456799999999999999999999999877654
No 160
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.00022 Score=66.13 Aligned_cols=32 Identities=19% Similarity=0.413 Sum_probs=28.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
|.=|++.||||+|||.+|+.||.+++..++.+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 45699999999999999999999999877654
No 161
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.17 E-value=0.00027 Score=63.22 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
+.-|+|.|+||+|||++|+.+++.++..++.+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 34689999999999999999999998766543
No 162
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.17 E-value=0.00033 Score=56.55 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+..++|.|++|+||||+++.+++.+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999986
No 163
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.15 E-value=0.0003 Score=62.79 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=25.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...+.+|+|.|++||||||+++.|+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 3567899999999999999999999876
No 164
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.14 E-value=0.00027 Score=62.20 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~ 114 (303)
+..++|.|+||+|||++|+.|++.++..++.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~ 80 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4568899999999999999999999876553
No 165
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.11 E-value=0.00029 Score=56.82 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+..++|.|++|+||||+++.+++.+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34578899999999999999999987
No 166
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.11 E-value=0.00063 Score=56.14 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CC--ceeehHHHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY---GL--VHIAAGDLLRA 121 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l---g~--~~i~~d~l~~~ 121 (303)
..|+|.|++|+||||+++.|+..+ +. .+++..+++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRE 96 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHH
Confidence 678999999999999999999877 33 34666666544
No 167
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.11 E-value=0.00029 Score=60.52 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=24.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGLVHIA 114 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~ 114 (303)
-++|.|++||||||+++.|+..++...+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~ 79 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVPFIT 79 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 38899999999999999999988655443
No 168
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.09 E-value=0.00032 Score=64.08 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
+..|+|.|+||+|||++|+.|++.++.+++.+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 103 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS 103 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 34688999999999999999999998766544
No 169
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.06 E-value=0.00037 Score=63.34 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
.-|+|.|+||+|||++|+.|++.++..++.+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 4588999999999999999999998766544
No 170
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.05 E-value=0.00043 Score=62.28 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCce
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVH 112 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~ 112 (303)
+..++|.||+|+||||+++.|+..++..+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 35789999999999999999999987643
No 171
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.04 E-value=0.00041 Score=62.14 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-CCcee
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY-GLVHI 113 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l-g~~~i 113 (303)
.-|+|.||||+|||++|+.+++.+ +..++
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred ceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence 468899999999999999999998 65544
No 172
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.03 E-value=0.0004 Score=57.90 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
.+.+++|.|++||||||+++.|+..+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345899999999999999999998764
No 173
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=97.03 E-value=0.0037 Score=55.11 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=18.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
...|+|+|| ||+|+.+.|.+.+.
T Consensus 100 ~RpvVl~Gp---~K~tl~~~Ll~~~p 122 (292)
T 3tvt_A 100 TRPVIILGP---LKDRINDDLISEYP 122 (292)
T ss_dssp CCCEEEEST---THHHHHHHHHHHCT
T ss_pred CCeEEEeCC---CHHHHHHHHHHhCh
Confidence 345788888 69999999999875
No 174
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.01 E-value=0.00017 Score=62.53 Aligned_cols=30 Identities=13% Similarity=0.321 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~ 114 (303)
.-|+|.|+||+|||++|+.|++.++.+++.
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~~~~~~ 74 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFS 74 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 347799999999999999999999866554
No 175
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.01 E-value=0.00054 Score=62.78 Aligned_cols=34 Identities=21% Similarity=0.149 Sum_probs=28.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~ 114 (303)
-..+.+|+|.|++||||||+++.|+..++..++.
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 3456799999999999999999999988766654
No 176
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.00 E-value=0.00051 Score=62.38 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~ 114 (303)
.+.-|+|.|+||+|||++|+.|++.++..++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 45679999999999999999999999876654
No 177
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.98 E-value=0.00042 Score=61.12 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
+..|+|.|+||+|||++|+.|++.+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999987
No 178
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.96 E-value=0.00057 Score=55.69 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
+.+|+|+|++||||||+++.|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998865
No 179
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.95 E-value=0.00033 Score=55.52 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
....++|.|++|+||||+++.|+..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 44578899999999999999999877
No 180
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.95 E-value=0.00048 Score=60.10 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=24.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGLVHIA 114 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~~~i~ 114 (303)
-|+|.|++||||||+++.|+..++...+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~ 103 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFIT 103 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEEE
Confidence 38999999999999999999988655443
No 181
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.92 E-value=0.00058 Score=57.48 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
.+..++|.|++|+||||+++.+++.++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999998764
No 182
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.91 E-value=0.00066 Score=60.79 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
+..|+|.|++|+|||++|+.|++.++..++..
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 34689999999999999999999998776543
No 183
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.90 E-value=0.00058 Score=64.14 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC--Cceee
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYG--LVHIA 114 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg--~~~i~ 114 (303)
+.-|+|.||||+|||++|+.|++.+| +.++.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~ 95 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCP 95 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEE
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEE
Confidence 35789999999999999999999998 65554
No 184
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.88 E-value=0.00063 Score=64.95 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
+..++|+|+||+||||+|+.|++.+|+.++.+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 35789999999999999999999999877654
No 185
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=96.88 E-value=0.013 Score=51.83 Aligned_cols=90 Identities=13% Similarity=0.165 Sum_probs=46.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCCCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~ 164 (303)
.-|+|+|| ||+|+.+.|.+.+.-.+-..-. + .+ -...+..++-..+...+. + ++
T Consensus 146 RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~-~----------~r----~i~~~~fis~~~V~~vl~----~----Gk 199 (308)
T 3kfv_A 146 RPVVILGP---VADIAMQKLTAEMPDQFEIAET-V----------SR----TDSPSKIIKLDTVRVIAE----K----DK 199 (308)
T ss_dssp CCEEEEST---THHHHHHHHHHHCTTTEEECCC-C----------------------CCCHHHHHHHHH----T----TC
T ss_pred CeEEEeCc---cHHHHHHHHHHhCccccccccc-c----------cc----cccCCCeecHHHHHHHHH----C----CC
Confidence 44788899 7999999999987432211100 0 00 124455555444444333 2 67
Q ss_pred cEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcC-HHHHHHH
Q 022042 165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVP-EDTLVER 204 (303)
Q Consensus 165 ~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~-~e~~~~R 204 (303)
.+|||=-+ .-+..+......| ++|||..| .+++.+|
T Consensus 200 ~~ILDId~---QGa~~lk~~~~~p-i~IFI~PPS~eeL~~r 236 (308)
T 3kfv_A 200 HALLDVTP---SAIERLNYVQYYP-IVVFFIPESRPALKAL 236 (308)
T ss_dssp EEEECCCH---HHHHHHHHTTCCC-EEEEEEESCHHHHHHH
T ss_pred cEEEEECH---HHHHHHHhcCCCC-EEEEEeCCCHHHHHHH
Confidence 78888433 2233344444456 66666655 4555554
No 186
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.87 E-value=0.0006 Score=56.95 Aligned_cols=29 Identities=14% Similarity=-0.001 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHI 113 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i 113 (303)
..++|.||||+||||+|..|++.++..++
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 36999999999999999999998865544
No 187
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.87 E-value=0.001 Score=59.23 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=29.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh---CC--ceeehHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY---GL--VHIAAGDLLR 120 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l---g~--~~i~~d~l~~ 120 (303)
+..++|.|++|+||||+++.|++.+ +. .+++..++..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~ 78 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ 78 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
Confidence 4568899999999999999999987 54 4566666543
No 188
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.86 E-value=0.00066 Score=62.31 Aligned_cols=32 Identities=13% Similarity=0.278 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
+.-|+|.|+||+|||++|+.|++.++..++.+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 46799999999999999999999998876644
No 189
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.85 E-value=0.00089 Score=53.58 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
....+++|.|+.||||||+.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456799999999999999999999876
No 190
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.85 E-value=0.00064 Score=53.33 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.-|+|.|++|+|||++|+.|++..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 457899999999999999998864
No 191
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.81 E-value=0.00083 Score=63.41 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
.-|+|.||||+||||+++.|+..++.+++.+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 4588999999999999999999998776543
No 192
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.78 E-value=0.00085 Score=55.87 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
.-||+++|+|+||||||++|..+...
T Consensus 3 ~~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 3 AMAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 34679999999999999998876443
No 193
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.77 E-value=0.00038 Score=56.55 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+|+|+|++||||||+++.|...|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999876
No 194
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.75 E-value=0.00069 Score=67.81 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
.|.-|+|.||||+|||++|+.+|.++|..++.+
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v 269 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence 345799999999999999999999999877654
No 195
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.75 E-value=0.00091 Score=55.88 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGL 110 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~ 110 (303)
+..++|.|++|+||||+++.+++.++.
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 347899999999999999999998743
No 196
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.69 E-value=0.0012 Score=61.79 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
+...++|.|+||+||||+++.|++.++..++.+
T Consensus 49 ~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 345789999999999999999999998766544
No 197
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.69 E-value=0.00088 Score=56.91 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIK 105 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La 105 (303)
..-+++|.|++||||||+++.|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 34589999999999999999988
No 198
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=96.69 E-value=0.0062 Score=57.17 Aligned_cols=95 Identities=16% Similarity=0.137 Sum_probs=48.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHHcCCCCC
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~l~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~ 162 (303)
.+..|+|+||+|+| ++++|.+.+.-.+.+.- .| ...+...|. .....+-.. +.+.+.+
T Consensus 223 ~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~~--TR--pR~gE~dG~-------~Y~FTs~~~----V~~vl~~---- 280 (468)
T 3shw_A 223 FLRPVTIFGPIADV---AREKLAREEPDIYQIAK--SE--PRDAGTDQR-------SSGIIRLHT----IKQIIDQ---- 280 (468)
T ss_dssp SCCCEEEESTTHHH---HHHHHHHHCTTTEEECC--CB--C-----------------CBCCHHH----HHHHHTT----
T ss_pred CCCEEEEECCCHHH---HHHHHHHhCCCceeeec--CC--CCCcccccc-------cCCcccHHH----HHHHHHC----
Confidence 45678999999999 99999888753333321 11 111111111 112233222 3333333
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhCCCCcEEEEEEcCHHHHHH
Q 022042 163 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVE 203 (303)
Q Consensus 163 ~~~~Vldg~p~~~~~~~~l~~~~~~pd~vI~L~~~~e~~~~ 203 (303)
++.+|||=-+ .-++.+......| ++|||..|--..++
T Consensus 281 Gk~~iLdId~---qg~~~l~~~~~~p-~~IFI~PPS~e~L~ 317 (468)
T 3shw_A 281 DKHALLDVTP---NAVDRLNYAQWYP-IVVFLNPDSKQGVK 317 (468)
T ss_dssp TCEEEECCCH---HHHHHHHHTTCCC-EEEEEECSCHHHHH
T ss_pred CCeEEEEeCH---HHHHHHHhcCCCC-EEEEEeCcCHHHHH
Confidence 6778888433 3333444444455 67777765443333
No 199
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.68 E-value=0.00095 Score=55.95 Aligned_cols=26 Identities=15% Similarity=0.058 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|++||||||+++.|+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998743
No 200
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.67 E-value=0.001 Score=62.34 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh-CCce--eehHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY-GLVH--IAAGDLL 119 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l-g~~~--i~~d~l~ 119 (303)
+.-|+|.||||+|||++|+.|+..+ +..+ ++..+++
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 3578999999999999999999998 6544 4444444
No 201
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.67 E-value=0.0013 Score=57.04 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
....+++|+|++||||||+.+.|+..+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 445689999999999999999998865
No 202
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.65 E-value=0.0013 Score=58.51 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
++.+|+|.|+.||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45699999999999999999999876
No 203
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.64 E-value=0.0012 Score=58.61 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=25.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
-++..+++|.|++||||||+++.|+.-+.
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 35567999999999999999999998773
No 204
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.64 E-value=0.0011 Score=54.76 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022042 86 KIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l 108 (303)
+|+|.|++||||||+.+.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68899999999999999999876
No 205
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.63 E-value=0.0015 Score=58.76 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.++.+|+|.|+.||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999876
No 206
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.63 E-value=0.0011 Score=54.61 Aligned_cols=23 Identities=22% Similarity=0.510 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022042 86 KIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l 108 (303)
.++|.|++|+|||++++.+++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999876
No 207
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.62 E-value=0.0014 Score=63.01 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHI 113 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i 113 (303)
.+..++|.||||+||||+++.|+..++..++
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 4568999999999999999999999876544
No 208
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.0009 Score=59.83 Aligned_cols=28 Identities=14% Similarity=0.064 Sum_probs=25.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...+..++|.|+||+|||++++.+++.+
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4567789999999999999999999988
No 209
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.60 E-value=0.0012 Score=58.59 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=26.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHI 113 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i 113 (303)
+..|+|.|++|+||||+|+.+++.++..++
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 356889999999999999999999987654
No 210
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.60 E-value=0.0015 Score=58.07 Aligned_cols=27 Identities=30% Similarity=0.630 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..+.+|+|+|++||||||++..|+..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 346799999999999999999999876
No 211
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.60 E-value=0.0012 Score=59.59 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGL 110 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~ 110 (303)
..++|.|+||+|||++|+.+++.++.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 58999999999999999999999874
No 212
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.58 E-value=0.0015 Score=53.64 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..+++++|++|+||||++-.++..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999997776655
No 213
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.57 E-value=0.0015 Score=59.20 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..+..++|.|++|+||||+++.+++.+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999976
No 214
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.55 E-value=0.0015 Score=54.68 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+.+++|.|++||||||+++.|+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998653
No 215
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.55 E-value=0.0012 Score=58.65 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
.+..+++.|+||+||||+++.|++.++..++.+
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 345778888899999999999999998766544
No 216
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.55 E-value=0.001 Score=59.46 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHI 113 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i 113 (303)
.-++|.|+||+|||++++.|++.++..++
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 36889999999999999999999886544
No 217
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.54 E-value=0.0018 Score=57.50 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..+.+|+|.|+.||||||+++.|+..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999999876
No 218
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.54 E-value=0.0014 Score=62.29 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~ 114 (303)
.-|+|.|+||+||||+++.|+..++..++.
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~~~~i~ 94 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEARVPFIT 94 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 348999999999999999999998765544
No 219
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.53 E-value=0.0013 Score=56.25 Aligned_cols=27 Identities=30% Similarity=0.217 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|+.||||||+.+.|+.-+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345689999999999999999997543
No 220
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.52 E-value=0.0012 Score=59.81 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+..++|.|++|+||||+++.+++.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 44578899999999999999999987
No 221
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.51 E-value=0.00042 Score=54.28 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
.-|+|.|++|+|||++|+.|++..+
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC
Confidence 3578999999999999999988765
No 222
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.50 E-value=0.0016 Score=61.65 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
.+.-|+|.|+||+|||++|+.|++.++.+++.+
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~v 269 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 345699999999999999999999998766543
No 223
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.50 E-value=0.0015 Score=58.90 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+..++|.|++|+||||+++.+++.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35578999999999999999999977
No 224
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.48 E-value=0.0017 Score=54.03 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC--Cceeeh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYG--LVHIAA 115 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg--~~~i~~ 115 (303)
...+++|.|++||||||++..|+...+ ..+++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 345899999999999999999987433 334443
No 225
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.47 E-value=0.0016 Score=52.81 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
.....|+|.|.+|+||||+.+.|...
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Confidence 34578999999999999999998753
No 226
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.45 E-value=0.0019 Score=58.50 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022042 86 KIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l 108 (303)
.++|.|++|+||||+++.+++.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999988
No 227
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.43 E-value=0.0022 Score=56.39 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..++|.|+||+||||+|+.|++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 378999999999999999999987
No 228
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.42 E-value=0.0014 Score=55.60 Aligned_cols=26 Identities=27% Similarity=0.171 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+.-+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44589999999999999999997543
No 229
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.40 E-value=0.0018 Score=55.54 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l 108 (303)
-+++|.|+.||||||+.+.|+.-+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999997644
No 230
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.40 E-value=0.0017 Score=55.53 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
....+++|.|+.||||||+.+.|+.-+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999997543
No 231
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=96.37 E-value=0.0047 Score=56.79 Aligned_cols=29 Identities=14% Similarity=-0.061 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~ 114 (303)
.+..|+|+||+| +|++++|.+.+.-.+.+
T Consensus 231 ~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~ 259 (391)
T 3tsz_A 231 FLRPVTIFGPIA---DVAREKLAREEPDIYQI 259 (391)
T ss_dssp SCCCEEEESTTH---HHHHHHHHHHCTTTEEE
T ss_pred CCCEEEEECCCH---HHHHHHHHhhCcccccc
Confidence 556799999998 89999999887543443
No 232
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.37 E-value=0.002 Score=53.37 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=22.4
Q ss_pred hhcccCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 77 LASATVEPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 77 ~~~~~~~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
|.........|+|.|.+|+||||+.++|...
T Consensus 21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcccceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3333455678999999999999999999764
No 233
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.37 E-value=0.0021 Score=52.14 Aligned_cols=33 Identities=15% Similarity=0.314 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAG 116 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d 116 (303)
...-|+|+|++|+||||+|..|.+ .|...++-|
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~-rG~~lvaDD 47 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID-RGHQLVCDD 47 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH-TTCEEEESS
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCeEecCC
Confidence 345789999999999999999987 487766544
No 234
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.36 E-value=0.0026 Score=59.95 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.....++|.|+||+|||++++.|++.+
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 344567899999999999999999997
No 235
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.36 E-value=0.0016 Score=54.50 Aligned_cols=25 Identities=16% Similarity=0.045 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
..-+++|.|+.||||||+.+.|+..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999863
No 236
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.34 E-value=0.0018 Score=65.14 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
.+..|+|.|+|||||||+++.|+..++..++.+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v 269 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEE
Confidence 456799999999999999999999988765544
No 237
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.34 E-value=0.0027 Score=57.67 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..+.+|+|.|+.||||||+++.|+..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 356799999999999999999999876
No 238
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.34 E-value=0.0037 Score=58.42 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=29.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh-----CC--ceeehHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY-----GL--VHIAAGDLLR 120 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l-----g~--~~i~~d~l~~ 120 (303)
+..++|.|++|+||||+++.|+..+ +. .+++..++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~ 173 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN 173 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH
Confidence 5678999999999999999999876 43 4566665543
No 239
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.33 E-value=0.0022 Score=51.96 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
+...|+|.|.+|+||||+...|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 4468999999999999999999764
No 240
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.33 E-value=0.002 Score=55.18 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|+.||||||+.+.|+.-+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455689999999999999999997644
No 241
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.32 E-value=0.0019 Score=56.06 Aligned_cols=27 Identities=30% Similarity=0.124 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|+.||||||+.+.|+.-+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999997644
No 242
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.32 E-value=0.0027 Score=49.63 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
++.|+|.|.+|+||||+.+.|...
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999764
No 243
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.32 E-value=0.0017 Score=56.87 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|+.||||||+.+.|+.-+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345689999999999999999997644
No 244
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.31 E-value=0.0034 Score=55.73 Aligned_cols=39 Identities=8% Similarity=0.049 Sum_probs=29.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC----C--ceeehHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYG----L--VHIAAGDLLRAE 122 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg----~--~~i~~d~l~~~~ 122 (303)
...++|.|++|+|||+++..|+..+. . .+++..+++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l 196 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDV 196 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHH
Confidence 46889999999999999999988653 3 346776666543
No 245
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.31 E-value=0.0032 Score=57.01 Aligned_cols=28 Identities=25% Similarity=0.397 Sum_probs=25.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..+..+|+|+|.||+||||++..|+..+
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999998876
No 246
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.31 E-value=0.003 Score=53.49 Aligned_cols=28 Identities=14% Similarity=0.029 Sum_probs=23.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..+..+++++|++|+||||++-.++.++
T Consensus 9 ~~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 9 KKIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp --CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3456799999999999999998888776
No 247
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.31 E-value=0.0029 Score=52.70 Aligned_cols=26 Identities=31% Similarity=0.288 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
+.++|+|+|.+|+||||++..|+..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999999875
No 248
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.31 E-value=0.0017 Score=55.97 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
+..|+|.|++|+|||++|+.|++..+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 34678999999999999999998763
No 249
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.30 E-value=0.0023 Score=52.31 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
..+|+|.|++||||||+.+.|+..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 368999999999999999999764
No 250
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.29 E-value=0.0025 Score=56.30 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
++.+|+|+|+.|+||||++..|+..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999998765
No 251
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.29 E-value=0.0019 Score=56.27 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|+.||||||+.+.|+.-+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345689999999999999999997643
No 252
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.29 E-value=0.0019 Score=55.60 Aligned_cols=27 Identities=37% Similarity=0.405 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|+.||||||+.+.|+.-+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999997644
No 253
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.29 E-value=0.0022 Score=54.20 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
...+++|.|++||||||++..|+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3458999999999999999999884
No 254
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.28 E-value=0.0022 Score=58.33 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
..+++|.|++||||||+++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5689999999999999999999987654
No 255
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.27 E-value=0.0023 Score=55.07 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
..-+++|.|+.||||||+.+.|+.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999763
No 256
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.27 E-value=0.0021 Score=55.80 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|+.||||||+.+.|+.-+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 455689999999999999999997644
No 257
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.25 E-value=0.0026 Score=55.32 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
...-+++|.|+.||||||+.+.|+.-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45568999999999999999999763
No 258
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.25 E-value=0.0029 Score=49.45 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
+..|+|.|.+|+||||+.+.|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999754
No 259
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.25 E-value=0.002 Score=55.08 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+.-+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999997644
No 260
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.25 E-value=0.0029 Score=50.26 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~ 106 (303)
...|+|.|.+|+||||+.++|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999964
No 261
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.24 E-value=0.0022 Score=55.91 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|+.||||||+.+.|+.-+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455689999999999999999997654
No 262
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.24 E-value=0.0021 Score=54.65 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
....+++|.|+.||||||+.+.|+.-+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999997654
No 263
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.24 E-value=0.003 Score=59.61 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..+.+|+|.|+.||||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 356799999999999999999999866
No 264
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.24 E-value=0.0031 Score=49.38 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
+...|+|.|.+|+||||+.+.|...
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999998753
No 265
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.24 E-value=0.0023 Score=55.49 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..+.+++|.|+.||||||+.+.|+.-+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 455689999999999999999997644
No 266
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.24 E-value=0.0021 Score=55.65 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+.-+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999997644
No 267
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.23 E-value=0.0029 Score=50.68 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
....|+|.|.+|+||||+.+.|...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 4468999999999999999999753
No 268
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.23 E-value=0.0018 Score=54.46 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+.-+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45589999999999999999996543
No 269
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.22 E-value=0.003 Score=55.49 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|++||||||+++.|+..+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999998765
No 270
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.22 E-value=0.004 Score=56.07 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=24.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.....+|+|+|++||||||+.+.|+..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4567899999999999999999998754
No 271
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.22 E-value=0.0028 Score=52.05 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
.+...|+|.|.+|+||||+.+.|...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 34578999999999999999999763
No 272
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.21 E-value=0.0024 Score=55.26 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..+-+++|.|+.||||||+.+.|+.-+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999997643
No 273
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.21 E-value=0.0034 Score=49.17 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
+...|+|.|.+|+||||+.+.|...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999999753
No 274
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.21 E-value=0.0032 Score=50.77 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
+...|+|.|.+|+||||+.+.|..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999975
No 275
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.20 E-value=0.0034 Score=56.80 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...+|+|+|+|||||||+.+.|...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998754
No 276
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.19 E-value=0.0033 Score=50.06 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
.+...|+|.|.+|+||||+.+.|...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34568999999999999999999764
No 277
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.19 E-value=0.0035 Score=57.26 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
....+|+|+|++||||||+.+.|+..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445689999999999999999998865
No 278
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.18 E-value=0.0028 Score=50.45 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
....|+|.|.+|+||||+.+.|...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999999753
No 279
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.18 E-value=0.0032 Score=51.15 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
.....|+|.|.+|+||||+.++|...
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 44568999999999999999998753
No 280
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.17 E-value=0.0028 Score=56.69 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 86 KIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg 109 (303)
.++|.|+||+||||+++.|++.++
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999864
No 281
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.17 E-value=0.003 Score=52.18 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
.....|+|.|.+|+||||+...|...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 34568999999999999999999763
No 282
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.16 E-value=0.0028 Score=56.85 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=21.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Q 022042 87 IMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 87 I~I~G~pGSGKSTla~~La~~lg 109 (303)
++|.||+|+||||+++.|++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 88999999999999999999863
No 283
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.16 E-value=0.0034 Score=58.48 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+.+|+|+|++||||||++..|+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999776
No 284
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.15 E-value=0.0018 Score=57.99 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 86 KIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg 109 (303)
-|+|.|+||+|||++|+.|++.++
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 488999999999999999999876
No 285
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.14 E-value=0.0026 Score=56.75 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
+..+++|+|+.||||||+.+.|...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4568999999999999999999864
No 286
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.13 E-value=0.0023 Score=63.99 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceeeh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~ 115 (303)
+.-|++.||||+|||.+|+.||.+++..++++
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v 542 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCEEEEC
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCceEEe
Confidence 34588999999999999999999999877764
No 287
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.12 E-value=0.0034 Score=57.01 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+|+|+|++||||||+.+.|+..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 33489999999999999999998765
No 288
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.12 E-value=0.004 Score=55.37 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCceeehHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGD 117 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d~ 117 (303)
..++|.|++|+||||+++.+++..+..+++...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 589999999999999999999988866776644
No 289
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.12 E-value=0.0026 Score=54.84 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+.-+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44589999999999999999997644
No 290
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.12 E-value=0.0028 Score=55.07 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|+.||||||+.+.|+.-+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345689999999999999999997644
No 291
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.12 E-value=0.0036 Score=49.88 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
....|+|.|.+|+||||+.+.|...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999999998753
No 292
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.12 E-value=0.0037 Score=51.26 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
...|+|.|++|+||||+.+.|...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 357999999999999999999764
No 293
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.12 E-value=0.0038 Score=58.21 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
+|.+|+|+|++|+||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999876
No 294
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.11 E-value=0.0041 Score=56.06 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGL 110 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~ 110 (303)
+..++|+|++|+||||+++.+++.++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346889999999999999999998864
No 295
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.10 E-value=0.0042 Score=51.89 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+..+|+|+|.+|+||||++.+|+..+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999875
No 296
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.10 E-value=0.0046 Score=50.10 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
.....|+|.|.+|+||||+.++|...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999999875
No 297
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.09 E-value=0.0026 Score=55.71 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|+.||||||+.+.|+.-+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 355689999999999999999997644
No 298
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.09 E-value=0.0031 Score=51.22 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
...|+|.|.+|+||||+.+.|...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999999753
No 299
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.09 E-value=0.0035 Score=52.95 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+|||||||++..++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999998887643
No 300
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.08 E-value=0.0041 Score=50.93 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=21.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
..+...|+|.|.+|+||||+.+.|...
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 345679999999999999999999753
No 301
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.08 E-value=0.0027 Score=51.45 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
.+...|+|.|.+|+||||+.+.|...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999988654
No 302
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.07 E-value=0.004 Score=48.89 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
....|+|.|.+|+||||+.+.|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3468999999999999999999763
No 303
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.07 E-value=0.0033 Score=56.43 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=20.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 022042 87 IMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 87 I~I~G~pGSGKSTla~~La~~l 108 (303)
++|.|++|+||||+++.|++.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999965
No 304
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.06 E-value=0.0038 Score=54.42 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..++|.|++||||||+.+.|+..+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998765
No 305
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.06 E-value=0.0044 Score=48.65 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~ 106 (303)
...|+|.|.+|+||||+.+.|..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999975
No 306
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.05 E-value=0.0028 Score=54.70 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+.-+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999997643
No 307
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.05 E-value=0.0035 Score=56.92 Aligned_cols=27 Identities=22% Similarity=0.117 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.||+||||||+.+.|+--+
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 345689999999999999999998643
No 308
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.05 E-value=0.0046 Score=50.14 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
+...|+|.|.+|+||||+.++|...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999888653
No 309
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.04 E-value=0.0041 Score=51.02 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
....|+|.|.+|+||||+.+.|...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999999763
No 310
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.03 E-value=0.003 Score=51.34 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..+.|+|.|.+|+||||+.+.|....
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 45789999999999999999998653
No 311
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.03 E-value=0.0045 Score=61.81 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=28.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh----------CCceeehHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY----------GLVHIAAGD 117 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l----------g~~~i~~d~ 117 (303)
.....++|.|+||+|||++|+.|++.+ +..++..+-
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 344578999999999999999999997 666665543
No 312
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.02 E-value=0.0048 Score=55.13 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..+.+|+|+|++|+||||++..|+..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999999876
No 313
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.01 E-value=0.0053 Score=52.57 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..+..++++.|.+|+||||++..|+..+
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999999765
No 314
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.01 E-value=0.0041 Score=50.41 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
++...|+|.|.+|+||||+.+.|..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHc
Confidence 4457899999999999999999975
No 315
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.00 E-value=0.0056 Score=48.28 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
.+...|+|.|.+|+||||+.+.|..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999999965
No 316
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.00 E-value=0.0036 Score=50.36 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
+...|+|.|.+|+||||+.++|..
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999975
No 317
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.99 E-value=0.005 Score=49.01 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
.+...|+|.|.+|+||||+.+.|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999999999965
No 318
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.98 E-value=0.0041 Score=56.87 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.||+||||||+.+.|+--+
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 345689999999999999999998643
No 319
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.97 E-value=0.0028 Score=57.64 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
....+|+|+|+.||||||+.+.|+..+.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4556899999999999999999988764
No 320
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.97 E-value=0.0051 Score=49.94 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=22.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
......|+|.|.+|+||||+.+.|..
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHc
Confidence 34557899999999999999999976
No 321
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.97 E-value=0.0045 Score=50.69 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
.....|+|.|.+|+||||+.+.|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 34578999999999999999999764
No 322
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.96 E-value=0.0047 Score=54.44 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
..++|.|++|+||||+++.+++.++
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhc
Confidence 3489999999999999999999863
No 323
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.96 E-value=0.0042 Score=52.66 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
..+.|+|.|.+|+||||+.+.|..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHcC
Confidence 456899999999999999999965
No 324
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.96 E-value=0.0043 Score=56.34 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.||+||||||+.+.|+--+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 345689999999999999999998643
No 325
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.94 E-value=0.0048 Score=48.86 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
....|+|.|.+|+||||+.++|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 346899999999999999999864
No 326
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.94 E-value=0.0064 Score=50.12 Aligned_cols=27 Identities=19% Similarity=0.023 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+.++++++|++||||||.+-.++.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 345799999999999999999888887
No 327
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.93 E-value=0.0049 Score=48.94 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
....|+|.|.+|+||||+.+.|...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999999764
No 328
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.93 E-value=0.0044 Score=53.07 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
...+.|+|.|.+|+||||+.+.|..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhC
Confidence 3457899999999999999999864
No 329
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.91 E-value=0.0046 Score=56.24 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|+.||||||+.+.|+--+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 345689999999999999999998643
No 330
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.89 E-value=0.0037 Score=54.31 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.-+++|.|+.||||||+.+.|+.-+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999999999999997543
No 331
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.89 E-value=0.0045 Score=49.28 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
....|+|.|.+|+||||+.+.|..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998853
No 332
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.89 E-value=0.0044 Score=56.21 Aligned_cols=27 Identities=30% Similarity=0.203 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|+.||||||+.+.|+--+
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345689999999999999999998643
No 333
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.0057 Score=49.54 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
....|+|.|.+|+||||+...|...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999764
No 334
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.89 E-value=0.0051 Score=49.28 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
....|+|.|.+|+||||+.+.|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999753
No 335
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.88 E-value=0.0048 Score=56.08 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|+.||||||+.+.|+.-+
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 456699999999999999999997643
No 336
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.88 E-value=0.0048 Score=53.74 Aligned_cols=25 Identities=8% Similarity=0.003 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.-+++|.|++||||||++..|+..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3489999999999999999998643
No 337
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.88 E-value=0.0048 Score=56.29 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|+.||||||+.+.|+--+
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345689999999999999999998643
No 338
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.86 E-value=0.007 Score=54.48 Aligned_cols=29 Identities=24% Similarity=0.333 Sum_probs=25.0
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 80 ATVEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 80 ~~~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...+..+|+|+|++|+||||+++.|+..+
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999998765
No 339
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.86 E-value=0.0041 Score=54.83 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..+.+++|.|+.||||||+.+.|+.-+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 455689999999999999999997643
No 340
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.86 E-value=0.0049 Score=51.07 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
....|+|.|.+|+||||+.+.|..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHhc
Confidence 346899999999999999999874
No 341
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.85 E-value=0.0059 Score=48.54 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
+...|+|.|.+|+||||+.++|..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHh
Confidence 456899999999999999999975
No 342
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.85 E-value=0.006 Score=50.57 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
....|+|.|++|+||||+...|....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998753
No 343
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.85 E-value=0.005 Score=50.81 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
....|+|.|.+|+||||+.++|...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4568999999999999999998763
No 344
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.83 E-value=0.0035 Score=51.28 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
+...|+|.|.+|+||||+.+.|...
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999877553
No 345
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.83 E-value=0.0052 Score=49.32 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
+...|+|.|.+|+||||+.+.|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999999753
No 346
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.83 E-value=0.0069 Score=56.17 Aligned_cols=28 Identities=21% Similarity=0.181 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
...-+|+|+|+.||||||+.+.|...++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4456899999999999999999998774
No 347
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.82 E-value=0.0058 Score=49.41 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
.+...|+|.|.+|+||||+.+.|..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc
Confidence 3457899999999999999999875
No 348
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.81 E-value=0.0054 Score=49.22 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
....|+|.|.+|+||||+.+.|...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999999753
No 349
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.80 E-value=0.0059 Score=49.50 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
...|+|.|.+|+||||+.++|...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999999763
No 350
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.80 E-value=0.0058 Score=55.29 Aligned_cols=28 Identities=14% Similarity=0.024 Sum_probs=24.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 81 ~~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
-....++.|.|++||||||++..|+..+
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456799999999999999999999876
No 351
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.80 E-value=0.0052 Score=48.77 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~ 106 (303)
...|+|.|.+|+||||+.+.|..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999974
No 352
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.80 E-value=0.0024 Score=64.28 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCceee
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg~~~i~ 114 (303)
+..++|.||||+||||+++.|+..++..++.
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 541 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC
T ss_pred CceeEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4568899999999999999999998765543
No 353
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.79 E-value=0.0072 Score=52.46 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGL 110 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~ 110 (303)
..|+|.||||+|||++|..|+..+++
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 46999999999999999999997644
No 354
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.78 E-value=0.003 Score=56.12 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
....+++|.|+.||||||+.+.|+.-+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 455799999999999999999997655
No 355
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.78 E-value=0.0051 Score=56.16 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|++||||||+.+.|+--+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 44589999999999999999998643
No 356
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.78 E-value=0.0052 Score=49.95 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
.+...|+|.|.+|+||||+.+.|...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 34578999999999999999999753
No 357
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.78 E-value=0.0059 Score=48.08 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
....|+|.|.+|+||||+.+.|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3468999999999999999999753
No 358
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.78 E-value=0.0066 Score=48.44 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
.+...|+|.|.+|+||||+.+.|...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 44578999999999999999998753
No 359
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.77 E-value=0.0071 Score=48.43 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
....|+|.|.+|+||||+.+.|...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999999753
No 360
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.77 E-value=0.0062 Score=48.98 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
....|+|.|.+|+||||+.+.|..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999975
No 361
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.76 E-value=0.006 Score=50.41 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=21.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
.+...|+|.|.+|+||||+..+|...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999764
No 362
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.75 E-value=0.0056 Score=53.78 Aligned_cols=23 Identities=22% Similarity=0.510 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022042 86 KIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l 108 (303)
.++|.|++|+||||+++.+++.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 38899999999999999999986
No 363
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.74 E-value=0.0059 Score=48.01 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
+...|+|.|.+|+||||+.+.|...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3468999999999999999999764
No 364
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.74 E-value=0.0035 Score=51.61 Aligned_cols=25 Identities=12% Similarity=0.328 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
....+|+|.|++||||||+.+.|..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3456899999999999999998853
No 365
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.73 E-value=0.0062 Score=47.80 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
...|+|.|.+|+||||+.+.|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999753
No 366
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.73 E-value=0.0065 Score=47.77 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~ 106 (303)
...|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 35799999999999999999975
No 367
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.72 E-value=0.005 Score=49.75 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~ 106 (303)
..|+|.|.+|+||||+.++|+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999965
No 368
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.72 E-value=0.0056 Score=48.10 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
....|+|.|.+|+||||+.+.|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999999975
No 369
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.72 E-value=0.0062 Score=54.39 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC--Cceeeh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYG--LVHIAA 115 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg--~~~i~~ 115 (303)
...++|.|+||+||||+|..++...| ..+++.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 34678999999999999999987643 446655
No 370
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.72 E-value=0.0065 Score=48.60 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
+...|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 446899999999999999999875
No 371
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.005 Score=57.85 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..+.+++|.|+.||||||+++.|+..+
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 456799999999999999999998754
No 372
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.71 E-value=0.0065 Score=53.42 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022042 86 KIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l 108 (303)
.++|.|++|+||||+++.+++.+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 38999999999999999999986
No 373
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.71 E-value=0.0039 Score=56.36 Aligned_cols=27 Identities=26% Similarity=0.164 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|+.||||||+.+.|+--+
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 345689999999999999999998643
No 374
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.71 E-value=0.0066 Score=47.73 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~ 106 (303)
...|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999965
No 375
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.70 E-value=0.0057 Score=49.44 Aligned_cols=26 Identities=35% Similarity=0.335 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
....|+|.|.+|+||||+.+.|...+
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhc
Confidence 34689999999999999998887655
No 376
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.70 E-value=0.0059 Score=56.07 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
...-+++|.||+||||||+.+.|+.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCChHHHHHHHHhC
Confidence 4556899999999999999999975
No 377
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.70 E-value=0.0057 Score=48.77 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
.+...|+|.|.+|+||||+.++|...
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34568999999999999999999763
No 378
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.69 E-value=0.0065 Score=52.66 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
.+.|+|.|.+|+||||+.+.|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999653
No 379
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.68 E-value=0.0088 Score=53.57 Aligned_cols=29 Identities=10% Similarity=0.078 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLV 111 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~ 111 (303)
.+..++|.|++|+||||+|+.+++.++..
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 34578999999999999999999998654
No 380
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.67 E-value=0.0073 Score=48.69 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 86 KIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg 109 (303)
+.+|+|+.||||||+.+.|.--++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 788999999999999999976654
No 381
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.67 E-value=0.0071 Score=48.94 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
....|+|.|.+|+||||+.+.|...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3468999999999999999999753
No 382
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.64 E-value=0.0057 Score=56.96 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+.+|+|+|++|+||||++..|+..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999876
No 383
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.63 E-value=0.0064 Score=60.61 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=25.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcee
Q 022042 86 KIMISGAPASGKGTQCELIKEKYGLVHI 113 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~lg~~~i 113 (303)
.++|.|+||+|||++|+.|++.++..++
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~ 517 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEE
Confidence 6899999999999999999999986544
No 384
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.63 E-value=0.0076 Score=47.44 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~ 106 (303)
..|+|.|.+|+||||+.+.|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999863
No 385
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.63 E-value=0.0085 Score=48.78 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
.....|+|.|.+|+||||+.++|...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34578999999999999999999763
No 386
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.62 E-value=0.0074 Score=48.62 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
....|+|.|.+|+||||+.++|...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999999764
No 387
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.62 E-value=0.0081 Score=57.02 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.++.+|+|+|.+|+||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999766
No 388
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.61 E-value=0.0065 Score=48.56 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
+...|+|.|.+|+||||+.+.|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 346899999999999999999974
No 389
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.60 E-value=0.0083 Score=48.56 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
....|+|.|.+|+||||+.+.|..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999964
No 390
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.59 E-value=0.0078 Score=54.58 Aligned_cols=26 Identities=23% Similarity=0.098 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-++.|.|+|||||||++..++..+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998764
No 391
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.57 E-value=0.0078 Score=47.98 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
....|+|.|.+|+||||+.+.|..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 346899999999999999999875
No 392
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.56 E-value=0.0072 Score=49.16 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~ 106 (303)
...|+|.|.+|+||||+.+.|..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999853
No 393
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.56 E-value=0.0075 Score=47.33 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIK 105 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La 105 (303)
..|+|.|.+|+||||+.++|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 579999999999999999884
No 394
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.54 E-value=0.0042 Score=55.78 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...+++|+|++||||||+.+.|+..+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998766
No 395
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.54 E-value=0.0093 Score=48.64 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
....|+|.|.+|+||||+.+.|...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999999753
No 396
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.54 E-value=0.0099 Score=52.42 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+.+|+|+|+.|+||||++..|+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56688999999999999999999876
No 397
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.52 E-value=0.0044 Score=58.80 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
.-|+|.|+||+|||++|+.|++.++
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 3688999999999999999998774
No 398
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.52 E-value=0.0062 Score=48.71 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIK 105 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La 105 (303)
.+...|+|.|.+|+||||+.+.|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 456799999999999999998885
No 399
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.51 E-value=0.0081 Score=48.85 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
+...|+|.|.+|+||||+.++|..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445899999999999999999976
No 400
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.51 E-value=0.0041 Score=56.39 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|+.||||||+.+.|+--+
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345689999999999999999998643
No 401
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.49 E-value=0.0087 Score=47.64 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
....|+|.|.+|+||||+.+.|...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3468999999999999999999753
No 402
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.49 E-value=0.0085 Score=48.65 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
.+...|+|.|.+|+||||+.+.|...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 34578999999999999999999764
No 403
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.48 E-value=0.0076 Score=48.43 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~ 106 (303)
..|+|.|.+|+||||+.+.|..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999965
No 404
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.47 E-value=0.01 Score=47.87 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
.+...|+|.|.+|+||||+.++|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567999999999999999999974
No 405
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.47 E-value=0.0097 Score=47.91 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
.....|+|.|.+|+||||+.++|...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999998643
No 406
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=95.46 E-value=0.24 Score=44.15 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhh
Q 022042 273 SVNKEDVFAQIDVALTNLLEQRK 295 (303)
Q Consensus 273 ~~s~eev~~~I~~~l~~~l~~~~ 295 (303)
|.++++.++++..+|..++....
T Consensus 304 NDdLe~A~~~L~~iI~~~~~~~h 326 (337)
T 4dey_A 304 ENQLEDACEHLADYLEAYWKATH 326 (337)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHhccC
Confidence 45799999999999999887643
No 407
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.44 E-value=0.0078 Score=48.61 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
+...|+|.|.+|+||||+.++|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4468999999999999999999753
No 408
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.43 E-value=0.0099 Score=47.75 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
.+...|+|.|.+|+||||+.+.|..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999999864
No 409
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.41 E-value=0.011 Score=46.26 Aligned_cols=22 Identities=32% Similarity=0.370 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 022042 86 KIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~ 107 (303)
.|+|.|.+|+||||+.+.|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999753
No 410
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.40 E-value=0.0092 Score=48.40 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
....|+|.|.+|+||||+.+.|..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999998854
No 411
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.39 E-value=0.01 Score=47.87 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~ 107 (303)
+.|+|.|.+|+||||+.+.|...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998654
No 412
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.34 E-value=0.0081 Score=49.17 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIK 105 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La 105 (303)
....|+|.|.+|+|||||.++|.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999885
No 413
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.33 E-value=0.013 Score=52.13 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC--ceeeh
Q 022042 85 LKIMISGAPASGKGTQCELIKEKYGL--VHIAA 115 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~lg~--~~i~~ 115 (303)
..++|.|++|+||||+++.+++..+. .+++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~ 63 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL 63 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence 48999999999999999999988743 44554
No 414
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.33 E-value=0.01 Score=52.47 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
+.+|+|.|++|+||||++..|+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999776
No 415
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.33 E-value=0.011 Score=48.06 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
.+...|+|.|.+|+||||+.+.|..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 4557899999999999999998853
No 416
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.31 E-value=0.0086 Score=55.20 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
..-++.|.|++||||||++..|+-
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Confidence 446899999999999999998863
No 417
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.31 E-value=0.0082 Score=60.75 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
....++|+|+||+||||+++.|++.+
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 34467899999999999999999987
No 418
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.29 E-value=0.011 Score=48.52 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
....|+|.|.+|+||||+...|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999975
No 419
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.28 E-value=0.011 Score=50.62 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
....|+|.|.+|+||||+...|...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999753
No 420
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.27 E-value=0.012 Score=49.72 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=19.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~ 106 (303)
.-+++|.|.||+|||++|..++.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 34899999999999999988754
No 421
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.27 E-value=0.01 Score=53.60 Aligned_cols=34 Identities=26% Similarity=0.099 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-----CCceeehH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAG 116 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l-----g~~~i~~d 116 (303)
...++.|.|+|||||||+|..++... ...+++..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34589999999999999999998654 24556543
No 422
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.26 E-value=0.011 Score=54.81 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~ 106 (303)
..+|+|.|++||||||+.+.|+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 44999999999999999999976
No 423
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.25 E-value=0.007 Score=57.62 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..+..|+|+|++||||||+.+.|+..+
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345679999999999999999998765
No 424
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.25 E-value=0.01 Score=48.57 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
.+...|+|.|.+|+||||+.++|..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4456899999999999999998853
No 425
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.25 E-value=0.011 Score=53.71 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
...+++|.|++|+||||+.+.|+..
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCEEEEECCCCccHHHHHHHHhcc
Confidence 3458999999999999999999643
No 426
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.24 E-value=0.012 Score=48.33 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
.+...|+|.|.+|+||||+..+|..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHh
Confidence 4457899999999999999999875
No 427
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.21 E-value=0.015 Score=54.17 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..+.+|+|+|+.|+||||++..|+..|
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999998765
No 428
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.18 E-value=0.017 Score=48.79 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh---CCc--eeehH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY---GLV--HIAAG 116 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l---g~~--~i~~d 116 (303)
.++|++.|++|+||||++-.++..+ |.. ++++|
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 3689999999999999988887765 543 34554
No 429
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.16 E-value=0.012 Score=51.97 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...+++|.|++|+||||+.+.|. .+
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 34689999999999999999998 54
No 430
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.16 E-value=0.011 Score=50.96 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~ 107 (303)
+.|+|.|.+||||||+.+.|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 57999999999999999999654
No 431
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.16 E-value=0.014 Score=48.06 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
.....|+|.|.+|+||||+.+.|...
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999999753
No 432
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.15 E-value=0.012 Score=48.74 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
+...|+|.|.+|+||||+.+.|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 346899999999999999999864
No 433
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.15 E-value=0.014 Score=52.55 Aligned_cols=26 Identities=12% Similarity=-0.066 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
....++.|.|+|||||||+|..|+..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45579999999999999999999886
No 434
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.14 E-value=0.012 Score=51.98 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...|+|.|++|+|||++|+.|++..
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhC
Confidence 4468899999999999999999854
No 435
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.14 E-value=0.019 Score=48.11 Aligned_cols=27 Identities=19% Similarity=0.073 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
....+.+++|++||||||.+-.++.++
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 345789999999999999998888877
No 436
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.12 E-value=0.01 Score=57.65 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
...++|.|++|+||||+++.|+..++
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 35789999999999999999999774
No 437
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.11 E-value=0.012 Score=48.22 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
....|+|.|.+|+||||+.+.|..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 346899999999999999999863
No 438
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.08 E-value=0.011 Score=54.74 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=21.7
Q ss_pred cCCCeE--EEEEcCCCCCHHHHHHHHHHH
Q 022042 81 TVEPLK--IMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 81 ~~~~~~--I~I~G~pGSGKSTla~~La~~ 107 (303)
-..+-+ ++|.|++||||||+.+.|+..
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 344556 999999999999999999653
No 439
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.08 E-value=0.015 Score=47.38 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
....|+|.|.+|+||||+.+.|..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999998864
No 440
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.07 E-value=0.014 Score=53.09 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
.++..|+|.|.+||||||+++.+.-.++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~~~ 58 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRIIHG 58 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHS
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4578999999999999999999954443
No 441
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.07 E-value=0.017 Score=57.60 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..+..++|+|+||+||||+++.|++.+
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999999987
No 442
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.07 E-value=0.016 Score=47.56 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
....|+|.|.+|+||||+...|..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999975
No 443
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.06 E-value=0.008 Score=48.13 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=10.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~ 106 (303)
...|+|.|.+|+||||+.+.|..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEECCCCC-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998864
No 444
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.03 E-value=0.016 Score=48.48 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
+...|+|.|.+|+||||+...|..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999864
No 445
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.03 E-value=0.012 Score=55.13 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=21.1
Q ss_pred hhhcccCCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 76 VLASATVEPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 76 ~~~~~~~~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
..+...+..++|+|.|.+|+|||||.++|..
T Consensus 15 ~~~~~~m~~~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 15 VPRGSHMGKPVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp --------CCEEEEECSSSSSHHHHHHHHEE
T ss_pred CCChhhcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3344445567999999999999999999964
No 446
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.02 E-value=0.017 Score=53.63 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+.+|+|+|+.||||||++..|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46688999999999999999999877
No 447
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.01 E-value=0.014 Score=53.28 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=22.2
Q ss_pred CCeEEEE--EcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMI--SGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I--~G~pGSGKSTla~~La~~l 108 (303)
.+..++| .|++|+||||+++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4456777 9999999999999998875
No 448
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.01 E-value=0.014 Score=47.88 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~ 106 (303)
...|+|.|.+|+||||+.++|..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhh
Confidence 46899999999999999999965
No 449
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.00 E-value=0.015 Score=52.74 Aligned_cols=33 Identities=24% Similarity=0.119 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-----CCceeeh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAA 115 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l-----g~~~i~~ 115 (303)
...++.|.|+||+||||+|..|+... ...+|+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 44589999999999999999998754 3456665
No 450
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.99 E-value=0.016 Score=47.33 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~ 106 (303)
...|+|.|.+|+||||+.+.|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999864
No 451
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.96 E-value=0.011 Score=47.80 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
....|+|.|.+|+||||+.++|...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999764
No 452
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.94 E-value=0.018 Score=57.48 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---C--CceeehHHH
Q 022042 86 KIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDL 118 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l---g--~~~i~~d~l 118 (303)
.++|.|+||+|||++|+.|++.+ + +..+++.++
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~ 560 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEY 560 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhc
Confidence 68999999999999999999986 2 344555443
No 453
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.93 E-value=0.016 Score=52.39 Aligned_cols=31 Identities=19% Similarity=0.055 Sum_probs=26.4
Q ss_pred cccCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 79 SATVEPLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 79 ~~~~~~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
..-.+..+++|.|+.||||||+.+.|+..+.
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445667999999999999999999998764
No 454
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.91 E-value=0.015 Score=51.81 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
....++.|.|+||+||||+|..|+...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 345689999999999999999998764
No 455
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.87 E-value=0.015 Score=51.30 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
+...|+|.|.||+|||||.+.|..
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHhC
Confidence 345799999999999999999964
No 456
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.86 E-value=0.02 Score=50.90 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAG 116 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d 116 (303)
...-|+|.|++|+||||++..|.++ |...++-|
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD 175 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADD 175 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESS
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCC
Confidence 3567999999999999999999875 77666443
No 457
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.85 E-value=0.015 Score=51.31 Aligned_cols=24 Identities=29% Similarity=0.188 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
+..+|+|.|.||+||||+.+.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHC
Confidence 345899999999999999999964
No 458
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.84 E-value=0.017 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 022042 86 KIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 86 ~I~I~G~pGSGKSTla~~La~~l 108 (303)
.++|.|++|+||||++..++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 88999999999999999998877
No 459
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.84 E-value=0.015 Score=55.63 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..-+++|.|+.||||||+.+.|+..+
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44689999999999999999997644
No 460
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.84 E-value=0.018 Score=53.73 Aligned_cols=31 Identities=6% Similarity=0.020 Sum_probs=26.6
Q ss_pred cccCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 022042 79 SATVEPLKIMISGAPASGKGTQCELIKEKYG 109 (303)
Q Consensus 79 ~~~~~~~~I~I~G~pGSGKSTla~~La~~lg 109 (303)
..-.+..+++|.|++||||||+.+.|+..+.
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4445677999999999999999999998764
No 461
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.84 E-value=0.018 Score=50.06 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
+.+.|+|.|.+|+||||+.+.|...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999754
No 462
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.84 E-value=0.013 Score=47.22 Aligned_cols=24 Identities=13% Similarity=0.272 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIK 105 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La 105 (303)
.+...|+|.|.+|+||||+.+.|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999884
No 463
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.78 E-value=0.016 Score=54.69 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l 108 (303)
-+++|.|+.||||||+.+.|+.-+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999998755
No 464
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.76 E-value=0.016 Score=51.15 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~ 106 (303)
..+++|.|++||||||+.+.|+.
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHST
T ss_pred CCeEEEECCCCCcHHHHHHHhcc
Confidence 45899999999999999999954
No 465
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.76 E-value=0.021 Score=46.44 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
...|+|.|.+|+|||||..+|...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999754
No 466
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.75 E-value=0.017 Score=51.29 Aligned_cols=26 Identities=15% Similarity=-0.018 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
....++.|.|+||+||||+|..|+..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999865
No 467
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.75 E-value=0.016 Score=55.92 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
+.+.+++|.|+.||||||+.+.|+.-+
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455789999999999999999998765
No 468
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.73 E-value=0.017 Score=49.81 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~ 106 (303)
...|+|.|.+|+||||+.+.|..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 46899999999999999999975
No 469
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.73 E-value=0.022 Score=44.73 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
+.+.+|.|+.||||||+.+.|.-.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 347889999999999999988543
No 470
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.73 E-value=0.019 Score=55.51 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 84 PLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..+++|+|+||+||||++..|...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4588899999999999999998765
No 471
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.73 E-value=0.022 Score=50.56 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|.||+||||++..++...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344689999999999999999998754
No 472
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.72 E-value=0.02 Score=49.86 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
...|+|.|.||+||||+.+.|...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999753
No 473
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.72 E-value=0.017 Score=55.24 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|+.||||||+.+.|+-.+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999998644
No 474
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.70 E-value=0.022 Score=47.18 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
....|+|.|.+|+||||+.++|...
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3468999999999999999999763
No 475
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.66 E-value=0.015 Score=56.22 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
+.+.+++|.|+.||||||+.+.|+.-+
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 456799999999999999999998765
No 476
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.60 E-value=0.017 Score=48.02 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHH-HHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCEL-IKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~-La~~l 108 (303)
....|+|.|.+|+||||+.+. +...+
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 346899999999999999998 54444
No 477
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.56 E-value=0.018 Score=50.90 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~ 106 (303)
...|+|.|++|+||||+.+.|..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999999853
No 478
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=94.53 E-value=0.016 Score=51.37 Aligned_cols=33 Identities=9% Similarity=0.154 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCceeehH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAG 116 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~lg~~~i~~d 116 (303)
...-|+|+|++|+||||+|-.|.+ .|...++-|
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD 178 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDD 178 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCC
Confidence 445699999999999999999865 577666544
No 479
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.47 E-value=0.017 Score=58.51 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l 108 (303)
..++|.|++|+|||++|+.|++.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999999987
No 480
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.44 E-value=0.027 Score=52.63 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|+||+||||++..|+...
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999988754
No 481
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.42 E-value=0.018 Score=55.15 Aligned_cols=27 Identities=26% Similarity=0.194 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
...-+++|.|+.||||||+.+.|+..+
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999997643
No 482
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.42 E-value=0.0098 Score=49.22 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=20.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
.....|+|.|.+|+||||+.+.|..
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred cCccEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999998863
No 483
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.41 E-value=0.025 Score=51.95 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
.+..|+|.|+||+||||+.+.|..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 346899999999999999999987
No 484
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.40 E-value=0.016 Score=56.23 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
+.+.+++|.|+.||||||+.+.|+.-+
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 456799999999999999999997755
No 485
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.36 E-value=0.024 Score=55.13 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34589999999999999999998644
No 486
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.35 E-value=0.028 Score=46.87 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~ 106 (303)
...|+|.|.+|+|||||..++..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998863
No 487
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.35 E-value=0.024 Score=54.29 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999998643
No 488
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.34 E-value=0.021 Score=54.47 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHH--HH
Q 022042 82 VEPLKIMISGAPASGKGTQCEL--IK 105 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~--La 105 (303)
...-+++|.|++||||||+++. ++
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~ 62 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYN 62 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
No 489
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.31 E-value=0.023 Score=51.77 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~ 107 (303)
+.|+|.|.||+||||+.+.|...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999875
No 490
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.29 E-value=0.018 Score=55.86 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
+.+.+++|.|+.||||||+.+.|+.-+
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 456799999999999999999997755
No 491
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.29 E-value=0.0089 Score=48.78 Aligned_cols=25 Identities=20% Similarity=0.330 Sum_probs=6.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
....|+|.|.+|+||||+.+.|...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEC-----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999988653
No 492
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.23 E-value=0.031 Score=46.46 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
...|+|.|.+|+||||+.+.|...
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999999753
No 493
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.21 E-value=0.026 Score=49.88 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 022042 85 LKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~ 106 (303)
-.|+|+|.||+||||+.+.|..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999965
No 494
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.19 E-value=0.0095 Score=52.87 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
...+++|.|++|+||||+.+.|..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHhcc
Confidence 356899999999999999999953
No 495
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.12 E-value=0.015 Score=48.22 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 022042 84 PLKIMISGAPASGKGTQCELIKEK 107 (303)
Q Consensus 84 ~~~I~I~G~pGSGKSTla~~La~~ 107 (303)
.+.|+|.|.+|+||||+.+.|...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999998653
No 496
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.09 E-value=0.015 Score=56.12 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
+.+.+++|.|+.||||||+.+.|+..+
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 456799999999999999999997655
No 497
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.09 E-value=0.029 Score=54.52 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l 108 (303)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998643
No 498
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.08 E-value=0.031 Score=50.85 Aligned_cols=34 Identities=24% Similarity=0.123 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-----CCceeehH
Q 022042 83 EPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAG 116 (303)
Q Consensus 83 ~~~~I~I~G~pGSGKSTla~~La~~l-----g~~~i~~d 116 (303)
.+.++.|.|+||+||||+|..|+... .+.+|+.+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 44588999999999999999988764 24566654
No 499
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.13 E-value=0.0091 Score=48.93 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 022042 82 VEPLKIMISGAPASGKGTQCELIKE 106 (303)
Q Consensus 82 ~~~~~I~I~G~pGSGKSTla~~La~ 106 (303)
.+...|+|.|.+|+||||+...|..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4557899999999999999988864
No 500
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.06 E-value=0.027 Score=54.66 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 022042 85 LKIMISGAPASGKGTQCELIKEKY 108 (303)
Q Consensus 85 ~~I~I~G~pGSGKSTla~~La~~l 108 (303)
-+++|.|+.||||||+.+.|+.-+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 579999999999999999997643
Done!